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Overview

ID MAG02051
Name LYD3_bin.4
Sample SMP0054
Taxonomy
Kingdom Bacteria
Phylum Bacteroidota
Class Bacteroidia
Order Chitinophagales
Family Chitinophagaceae
Genus JJ008
Species
Assembly information
Completeness (%) 76.86
Contamination (%) 4.15
GC content (%) 42.0
N50 (bp) 5,803
Genome size (bp) 3,157,309

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2980

Gene name Description KEGG GOs EC E-value Score Sequence
LYD3_k127_100561_0 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 356.0
LYD3_k127_100561_1 COGs COG2823 periplasmic or secreted lipoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006169 341.0
LYD3_k127_100561_2 COGs COG3467 flavin-nucleotide-binding protein K07005 - - 0.000000000002719 67.0
LYD3_k127_1007342_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1629.0
LYD3_k127_1007342_1 - - - - 0.00000000000000000000000000000000000000000007866 164.0
LYD3_k127_1007342_2 - - - - 0.00000000000005288 72.0
LYD3_k127_1007342_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000001487 56.0
LYD3_k127_101340_0 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 1.629e-199 625.0
LYD3_k127_101340_1 sterol desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 414.0
LYD3_k127_101340_2 Cytidylyltransferase K00979,K19714 - 1.1.3.48,2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 370.0
LYD3_k127_101340_3 Predicted membrane protein (DUF2306) - - - 0.0000000000000000000000000000000000000000000000000000000000000004603 226.0
LYD3_k127_101340_4 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000001802 211.0
LYD3_k127_101340_5 - - - - 0.00000000000000000000000000000000000000000008034 162.0
LYD3_k127_101340_6 Putative prokaryotic signal transducing protein - - - 0.00000000000000000000000000000000000009448 146.0
LYD3_k127_101340_7 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000001737 108.0
LYD3_k127_10514_0 PFAM TonB-dependent Receptor Plug K02014,K16089 - - 2.496e-209 672.0
LYD3_k127_10514_1 Belongs to the arginase family K01479 - 3.5.3.8 0.00000000000000000000000000000000000000005117 154.0
LYD3_k127_107003_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 580.0
LYD3_k127_107003_1 Alpha amylase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006871 263.0
LYD3_k127_1093339_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 2.945e-203 642.0
LYD3_k127_1093339_1 Peptidase family C25 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005335 620.0
LYD3_k127_1093339_2 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006502 560.0
LYD3_k127_1093339_3 Lipolytic protein - - - 0.0000000000000000001235 89.0
LYD3_k127_10991_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004848 280.0
LYD3_k127_10991_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000001902 190.0
LYD3_k127_1104688_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 538.0
LYD3_k127_1104688_1 signal transduction histidine kinase K07675 - 2.7.13.3 0.00000000000000000000000000000000000000005113 158.0
LYD3_k127_1130707_0 Domain of unknown function (DUF5117) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 607.0
LYD3_k127_113974_0 Dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 361.0
LYD3_k127_113974_1 NAD dependent epimerase dehydratase family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009842 324.0
LYD3_k127_1149706_0 aconitate hydratase K01681 - 4.2.1.3 1.038e-270 839.0
LYD3_k127_1149706_1 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840 - 5.4.2.8 3.54e-207 653.0
LYD3_k127_1149706_2 Cysteine desulfurase K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 579.0
LYD3_k127_1149706_3 Thiopurine S-methyltransferase (TPMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 306.0
LYD3_k127_1149706_4 PFAM PspC domain - - - 0.0000000000000000000000000000001203 124.0
LYD3_k127_1149706_5 - - - - 0.00000000000000008766 82.0
LYD3_k127_1149706_6 Thiopurine S-methyltransferase (TPMT) - - - 0.000004207 49.0
LYD3_k127_11536_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1549.0
LYD3_k127_11536_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 6.01e-294 904.0
LYD3_k127_11536_12 - - - - 0.00000000000000000000002225 106.0
LYD3_k127_11536_13 Bacterial capsule synthesis protein PGA_cap K01081 - 3.1.3.5 0.00000000001153 73.0
LYD3_k127_11536_2 Peptidase family M28 - - - 2.675e-208 657.0
LYD3_k127_11536_3 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 1.15e-205 647.0
LYD3_k127_11536_4 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005664 486.0
LYD3_k127_11536_5 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 464.0
LYD3_k127_11536_6 Male sterility protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007459 389.0
LYD3_k127_11536_7 FAD-dependent dehydrogenase K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 331.0
LYD3_k127_11536_8 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000007679 230.0
LYD3_k127_11536_9 Acetyltransferase (GNAT) domain K02348 - - 0.000000000000000000000000000000000000000000000000000009915 193.0
LYD3_k127_1177804_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001801 265.0
LYD3_k127_1177804_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001089 240.0
LYD3_k127_1177804_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000001521 210.0
LYD3_k127_1177804_3 Fatty acid desaturase - - - 0.0000000000000000000000000000633 121.0
LYD3_k127_1177804_4 Methyltransferase domain - - - 0.00000000000000004445 83.0
LYD3_k127_1177804_5 Fatty acid desaturase - - - 0.00000000000000007842 86.0
LYD3_k127_1177804_6 Bacterial membrane protein, YfhO - - - 0.000000000000001027 90.0
LYD3_k127_1189849_0 Mitochondrial biogenesis AIM24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000552 404.0
LYD3_k127_1189849_1 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000005609 231.0
LYD3_k127_1189849_2 - - - - 0.0000000000000000000000000000000000000000000000000000000061 207.0
LYD3_k127_1189849_3 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000001033 209.0
LYD3_k127_1199284_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.43e-225 717.0
LYD3_k127_1199284_1 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 464.0
LYD3_k127_1201252_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 443.0
LYD3_k127_1201252_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 447.0
LYD3_k127_1201252_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 367.0
LYD3_k127_1201252_3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006126 359.0
LYD3_k127_1201252_4 CBS domain - - - 0.000000000000000000000000000000000000000000000000000000001054 205.0
LYD3_k127_1201252_5 - - - - 0.00000000000000000001416 96.0
LYD3_k127_120159_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 529.0
LYD3_k127_120159_1 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 443.0
LYD3_k127_120159_2 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 301.0
LYD3_k127_120159_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000009821 162.0
LYD3_k127_120159_4 Transcriptional regulator - - - 0.000000000000000000000000001208 113.0
LYD3_k127_1203407_0 iron-sulfur cluster-binding protein K18929 - - 1.539e-231 723.0
LYD3_k127_1203407_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 433.0
LYD3_k127_1203407_2 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005577 437.0
LYD3_k127_1203407_3 drug metabolite-transporting permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 377.0
LYD3_k127_1203407_4 Protein of unknown function (DUF3109) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 323.0
LYD3_k127_1203407_5 Predicted membrane protein (DUF2306) - - - 0.000000000000000000000000000000002086 138.0
LYD3_k127_120927_0 Belongs to the UPF0176 family K07146 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 531.0
LYD3_k127_120927_1 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000715 281.0
LYD3_k127_120927_2 - - - - 0.000000000000000000000000000000000000000000000045 175.0
LYD3_k127_121137_0 COG2373 Large extracellular alpha-helical protein - - - 5.667e-218 687.0
LYD3_k127_1218997_0 Glycosyl hydrolase-like 10 - - - 2.011e-219 689.0
LYD3_k127_1218997_1 - - - - 0.000008774 49.0
LYD3_k127_1224326_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 8.66e-209 655.0
LYD3_k127_1224326_1 NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 7.325e-196 612.0
LYD3_k127_1224326_2 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 571.0
LYD3_k127_1224326_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 491.0
LYD3_k127_1224326_4 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 426.0
LYD3_k127_1224326_5 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003688 351.0
LYD3_k127_1224326_6 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002246 272.0
LYD3_k127_1224326_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000000000008074 160.0
LYD3_k127_1224326_8 Phenylacetate--CoA ligase K01912 - 6.2.1.30 0.00002852 48.0
LYD3_k127_1257354_0 Tyrosine recombinase XerC K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 477.0
LYD3_k127_1257354_2 PFAM Uncharacterised protein family (UPF0153) K06940 - - 0.000000000000000000000000001261 115.0
LYD3_k127_1257354_3 TonB dependent receptor - - - 0.000000006452 66.0
LYD3_k127_126552_0 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 447.0
LYD3_k127_126552_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 337.0
LYD3_k127_126552_2 - - - - 0.00000000000000000000000000000000000000000000000005189 185.0
LYD3_k127_126552_3 S23 ribosomal protein - - - 0.00000000000000000000000000000000000000158 150.0
LYD3_k127_126552_4 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000004974 95.0
LYD3_k127_1270118_0 Coenzyme A transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 619.0
LYD3_k127_1270118_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006647 446.0
LYD3_k127_1270118_2 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 302.0
LYD3_k127_1270118_3 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000001775 128.0
LYD3_k127_1270844_0 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 405.0
LYD3_k127_1270844_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008406 413.0
LYD3_k127_1279620_0 Carbohydrate family 9 binding domain-like - - - 1.104e-270 857.0
LYD3_k127_1279620_1 PFAM Aldehyde dehydrogenase K13877 - 1.2.1.26 4.512e-245 764.0
LYD3_k127_1279620_2 Por secretion system C-terminal sorting domain-containing protein - - - 2.74e-229 734.0
LYD3_k127_1279620_3 Belongs to the DapA family K01714,K21062 - 3.5.4.22,4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 471.0
LYD3_k127_1279620_4 PFAM Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000002057 128.0
LYD3_k127_1279620_5 Permease - - - 0.00000000000000000000000000000009662 130.0
LYD3_k127_1294970_0 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 595.0
LYD3_k127_1294970_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000000000000000000000000000000000000004274 149.0
LYD3_k127_1300412_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 317.0
LYD3_k127_1300412_1 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007568 263.0
LYD3_k127_1300412_2 HAD-hyrolase-like K07025 - - 0.000000000009721 65.0
LYD3_k127_1302359_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.087e-263 818.0
LYD3_k127_1302359_1 DNA mismatch repair protein MutT K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008647 521.0
LYD3_k127_1302359_2 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 471.0
LYD3_k127_1302359_4 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000001794 198.0
LYD3_k127_1302359_5 ribosomal protein - - - 0.000000000000000000000000000000131 127.0
LYD3_k127_1302359_6 Belongs to the ParB family K03497 - - 0.00000000000000000000000000002062 118.0
LYD3_k127_1302505_0 Permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 353.0
LYD3_k127_1302505_1 Na+/Pi-cotransporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 301.0
LYD3_k127_1311644_0 Cupin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 469.0
LYD3_k127_1311644_1 COGs COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006878 413.0
LYD3_k127_1316418_0 lacI family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 407.0
LYD3_k127_1322096_0 TonB-linked outer membrane protein, SusC RagA family - - - 7.499e-215 691.0
LYD3_k127_1322096_1 of the RND superfamily K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 394.0
LYD3_k127_132652_0 Prolyl oligopeptidase family - - - 1.115e-228 717.0
LYD3_k127_132652_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 324.0
LYD3_k127_1347870_0 nucleotide catabolic process - - - 1.765e-212 671.0
LYD3_k127_1347870_1 PLD-like domain - - - 7.231e-195 624.0
LYD3_k127_1347870_12 LGFP repeat - - - 0.00000000236 69.0
LYD3_k127_1347870_2 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007529 351.0
LYD3_k127_1347870_3 polysaccharide catabolic process K03478 - 3.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 312.0
LYD3_k127_1347870_4 DNA RNA non-specific endonuclease K01173 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001405 284.0
LYD3_k127_1347870_5 lysyltransferase activity K07027 - - 0.00000000000000000000000000000000000000000000000000007725 199.0
LYD3_k127_1347870_6 - - - - 0.0000000000000000000000000000000002701 135.0
LYD3_k127_1347870_7 PFAM SCP-like extracellular - - - 0.0000000000000000000000000005284 119.0
LYD3_k127_1347870_8 MazG-like family - - - 0.0000000000002911 72.0
LYD3_k127_1347870_9 PA14 domain - - - 0.0000000000003786 83.0
LYD3_k127_1352950_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 1.829e-226 706.0
LYD3_k127_1352950_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 546.0
LYD3_k127_1352950_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009547 327.0
LYD3_k127_136003_0 COG2373 Large extracellular alpha-helical protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001245 261.0
LYD3_k127_136003_1 Belongs to the UPF0312 family - - - 0.0000000000000000001145 95.0
LYD3_k127_136003_2 tRNA_anti-like - - - 0.00000005275 62.0
LYD3_k127_1365511_0 Peptidase, family M20 M25 M40 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004986 484.0
LYD3_k127_1365511_1 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 441.0
LYD3_k127_1365511_2 SPTR Conserved repeat domain protein - - - 0.0000000000000000000000000000000000000000000000000000000104 229.0
LYD3_k127_1365511_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000004995 178.0
LYD3_k127_1365511_4 Fibronectin type 3 domain - - - 0.0000000000000000000002056 115.0
LYD3_k127_1365511_5 - - - - 0.00000000000000000002199 109.0
LYD3_k127_1365511_6 F-box LRR-repeat protein K10270 - - 0.0002817 55.0
LYD3_k127_1369047_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 6.9e-272 848.0
LYD3_k127_1369047_1 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482 332.0
LYD3_k127_1369047_2 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004315 293.0
LYD3_k127_1369047_4 abc transporter (atp-binding protein) K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000009766 231.0
LYD3_k127_1369679_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 300.0
LYD3_k127_1369679_1 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000001828 190.0
LYD3_k127_1369679_2 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000000000000000005651 166.0
LYD3_k127_13812_0 nitrous oxide K19341 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 355.0
LYD3_k127_13812_1 ABC-type multidrug transport system ATPase component K19340 - - 0.00000000000000000000000000000000000000000000000000000001433 202.0
LYD3_k127_13812_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.00000000000000000003244 94.0
LYD3_k127_1391309_0 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 310.0
LYD3_k127_1391309_1 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000003404 250.0
LYD3_k127_1405009_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000001905 162.0
LYD3_k127_1405009_1 Transcriptional regulator - - - 0.0000000000000000000000000002946 116.0
LYD3_k127_1405009_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.00003017 46.0
LYD3_k127_1413700_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 383.0
LYD3_k127_1413700_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 317.0
LYD3_k127_1413700_2 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002595 283.0
LYD3_k127_1413700_3 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001778 252.0
LYD3_k127_1413908_0 Peptidase family C25 - - - 0.0 1339.0
LYD3_k127_1413908_1 gliding motility-associated lipoprotein GldJ - - - 0.00000000000000000000000000000000000000000000004732 172.0
LYD3_k127_1428014_0 Outer membrane protein beta-barrel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 592.0
LYD3_k127_1441844_0 PFAM Bacterial Fmu (Sun) eukaryotic nucleolar NOL1 Nop2p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 529.0
LYD3_k127_1441844_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007019 425.0
LYD3_k127_1441844_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 296.0
LYD3_k127_1441844_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001162 286.0
LYD3_k127_1441844_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007882 278.0
LYD3_k127_1441844_5 PFAM Peptidoglycan-binding lysin domain - - - 0.000000000000000000000000000000000000000000000000004081 194.0
LYD3_k127_1441844_6 - - - - 0.000000000000000000000000000000000000002423 162.0
LYD3_k127_1463188_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.0 1186.0
LYD3_k127_1463188_1 E1-E2 ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.0 1065.0
LYD3_k127_1463188_10 - - - - 0.000000000000000000000000000000000000000000000000005427 185.0
LYD3_k127_1463188_11 PFAM Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000001144 135.0
LYD3_k127_1463188_12 manually curated - - - 0.00000000000000000000000000000006835 124.0
LYD3_k127_1463188_13 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000516 96.0
LYD3_k127_1463188_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 7.341e-197 621.0
LYD3_k127_1463188_3 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007532 607.0
LYD3_k127_1463188_4 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 596.0
LYD3_k127_1463188_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 586.0
LYD3_k127_1463188_6 GMP synthase-glutamine amidotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 397.0
LYD3_k127_1463188_7 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 373.0
LYD3_k127_1463188_8 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 351.0
LYD3_k127_1463188_9 Putative MetA-pathway of phenol degradation - - - 0.00000000000000000000000000000000000000000000000000000003157 205.0
LYD3_k127_1504687_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 548.0
LYD3_k127_1504687_1 serine-type endopeptidase activity K04771 - 3.4.21.107 0.00000000000000000003524 96.0
LYD3_k127_1515739_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 2.504e-206 648.0
LYD3_k127_1515739_1 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001256 243.0
LYD3_k127_1515739_2 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000505 194.0
LYD3_k127_1515739_3 Rieske (2Fe-2S) domain K05710 - - 0.000000000000000000000000000000000000000000000000436 178.0
LYD3_k127_1515739_4 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000001837 132.0
LYD3_k127_1522885_0 glutamine synthetase K01915 - 6.3.1.2 0.0 1239.0
LYD3_k127_1522885_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1212.0
LYD3_k127_1522885_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 342.0
LYD3_k127_1522885_3 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 295.0
LYD3_k127_1522885_4 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000003576 241.0
LYD3_k127_1522885_5 Thioesterase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000003563 199.0
LYD3_k127_1522885_6 - - - - 0.00000000000000000000000000000000005743 141.0
LYD3_k127_1526018_0 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 452.0
LYD3_k127_1526018_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 427.0
LYD3_k127_1526018_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 377.0
LYD3_k127_1526018_3 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 347.0
LYD3_k127_1526018_4 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008648 291.0
LYD3_k127_1526018_5 peptidase K03427 - 2.1.1.72 0.000000000000000000000000000000000000000002842 168.0
LYD3_k127_1526018_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000000954 149.0
LYD3_k127_1526018_7 Domain of unknown function (DUF4286) - - - 0.0000000000000000000000006511 105.0
LYD3_k127_1529527_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 5.865e-293 902.0
LYD3_k127_1560077_0 DNA polymerase III K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006438 432.0
LYD3_k127_1560077_1 PFAM Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 392.0
LYD3_k127_1560077_2 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003247 346.0
LYD3_k127_1560077_3 cyclopropane-fatty-acyl-phospholipid synthase K20444 - - 0.0000000000000000000001834 99.0
LYD3_k127_158647_0 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007823 534.0
LYD3_k127_158647_1 DoxX family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 392.0
LYD3_k127_158647_2 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 330.0
LYD3_k127_158647_3 Protein of unknown function (DUF721) - - - 0.000000000000000000000000000000000000000927 149.0
LYD3_k127_1590805_0 leucine binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 361.0
LYD3_k127_1590805_1 DEAD DEAH box helicase K03724 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008636 311.0
LYD3_k127_1590805_2 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000000000000002666 101.0
LYD3_k127_1597171_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 0.0 1048.0
LYD3_k127_1597171_1 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.0 1035.0
LYD3_k127_1597171_2 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 391.0
LYD3_k127_1597171_3 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 322.0
LYD3_k127_1597171_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007474 287.0
LYD3_k127_1597171_5 - - - - 0.00000000000000000000000000000000000000000000000000002249 191.0
LYD3_k127_1597171_6 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0008326 44.0
LYD3_k127_1597936_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 8.72e-318 978.0
LYD3_k127_1597936_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 316.0
LYD3_k127_1638553_0 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 348.0
LYD3_k127_1638553_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000002725 200.0
LYD3_k127_1638553_2 Pirin C-terminal cupin domain K06911 - - 0.0000001161 53.0
LYD3_k127_16408_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1184.0
LYD3_k127_16408_1 Cystathionine beta-synthase K01697 - 4.2.1.22 4.011e-258 799.0
LYD3_k127_16408_10 PFAM S23 ribosomal protein - - - 0.0000000000000000000000000000000000000000004243 160.0
LYD3_k127_16408_11 - - - - 0.000000000000000000000000000000000000000001113 161.0
LYD3_k127_16408_12 - - - - 0.00000000000000000000000000004413 121.0
LYD3_k127_16408_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 2.281e-198 631.0
LYD3_k127_16408_3 N-acetylglucosamine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005265 454.0
LYD3_k127_16408_4 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 432.0
LYD3_k127_16408_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 305.0
LYD3_k127_16408_6 succinate dehydrogenase K00241 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 297.0
LYD3_k127_16408_7 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000305 250.0
LYD3_k127_16408_8 Succinate dehydrogenase fumarate reductase Fe-S protein subunit K00240 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000008145 226.0
LYD3_k127_16408_9 PFAM periplasmic binding protein - - - 0.00000000000000000000000000000000000000000000000004783 181.0
LYD3_k127_1644039_0 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000007273 229.0
LYD3_k127_1644039_1 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000002299 143.0
LYD3_k127_1664322_0 Peptidase M14, carboxypeptidase A - - - 9.221e-262 816.0
LYD3_k127_1664322_1 PFAM Major Facilitator Superfamily K08156 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 432.0
LYD3_k127_1664322_11 - - - - 0.00009551 44.0
LYD3_k127_1664322_2 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 340.0
LYD3_k127_1664322_3 PFAM Cna B domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 325.0
LYD3_k127_1664322_5 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000008599 122.0
LYD3_k127_1664322_6 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000001042 119.0
LYD3_k127_1664322_7 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000001069 109.0
LYD3_k127_1664322_8 Endonuclease Exonuclease Phosphatase - - - 0.0000000000000000000001143 115.0
LYD3_k127_1664322_9 - - - - 0.00000000000000003688 97.0
LYD3_k127_1678943_0 PFAM fumarylacetoacetate (FAA) hydrolase K16171 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 559.0
LYD3_k127_1678943_1 flavin reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 475.0
LYD3_k127_1678943_2 Protein of unknown function (DUF4197) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004574 293.0
LYD3_k127_1678943_3 polysaccharide deacetylase K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000003521 247.0
LYD3_k127_1678943_4 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000002048 122.0
LYD3_k127_1678943_5 chlorophyll binding - - - 0.000000000000000000000014 111.0
LYD3_k127_168496_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007248 520.0
LYD3_k127_168496_1 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006168 307.0
LYD3_k127_168496_2 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000003596 222.0
LYD3_k127_1693288_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 4.594e-222 700.0
LYD3_k127_1693288_1 serine-type endopeptidase activity K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000006302 228.0
LYD3_k127_1693288_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000001936 145.0
LYD3_k127_1693288_3 Domain of unknown function (DUF4369) - - - 0.00000000000002518 75.0
LYD3_k127_1706995_0 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 346.0
LYD3_k127_1706995_1 polyketide synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009222 267.0
LYD3_k127_1719788_0 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 293.0
LYD3_k127_1719788_1 Phage Tail Collar Domain - - - 0.0000000000000000000000000000000000000000000000000000000007629 206.0
LYD3_k127_1719788_2 Aspartyl/Asparaginyl beta-hydroxylase - - - 0.000000000000000000000000000000000000000000000000000003234 198.0
LYD3_k127_1719788_3 Phage Tail Collar Domain - - - 0.000000000000000000000000000000000000000000000000000004714 196.0
LYD3_k127_1719788_4 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000001629 194.0
LYD3_k127_1719788_5 Periplasmic binding protein K01999 - - 0.000000000000000000000000000000000000000000000000006328 195.0
LYD3_k127_1719788_6 Predicted membrane protein (DUF2061) - - - 0.00000000000000000000000000000000000000000000291 172.0
LYD3_k127_1719788_7 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.000000000001939 76.0
LYD3_k127_1719788_8 Belongs to the Nudix hydrolase family K13522 - 2.7.7.1 0.0007658 47.0
LYD3_k127_1721230_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 8.247e-211 658.0
LYD3_k127_1721230_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 2.621e-206 647.0
LYD3_k127_1721230_2 synthase small subunit K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000001402 258.0
LYD3_k127_1727570_0 Dahp synthetase i kdsa K04516 - 5.4.99.5 5.836e-196 615.0
LYD3_k127_1727570_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 513.0
LYD3_k127_1727570_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 479.0
LYD3_k127_1727570_3 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000915 113.0
LYD3_k127_1727570_4 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000003745 87.0
LYD3_k127_1741219_0 protein related to plant photosystem II stability assembly factor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006007 399.0
LYD3_k127_1741219_1 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003283 266.0
LYD3_k127_1741219_2 Redoxin - - - 0.000000000000118 73.0
LYD3_k127_1741311_0 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 1.887e-222 707.0
LYD3_k127_1741311_1 Belongs to the proline racemase family K12658 - 5.1.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000757 567.0
LYD3_k127_1741311_2 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 547.0
LYD3_k127_1741311_3 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 317.0
LYD3_k127_1741311_4 DinB family - - - 0.000000004029 64.0
LYD3_k127_1741311_5 - - - - 0.00000000493 62.0
LYD3_k127_174405_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 376.0
LYD3_k127_174405_1 Protein of unknown function (DUF2851) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 370.0
LYD3_k127_174405_10 Serine aminopeptidase, S33 - - - 0.0005997 43.0
LYD3_k127_174405_2 NADP oxidoreductase coenzyme F420-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000153 276.0
LYD3_k127_174405_3 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001007 263.0
LYD3_k127_174405_4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000000000000082 220.0
LYD3_k127_174405_5 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000001314 222.0
LYD3_k127_174405_6 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.000000000000000000000000000000000000000000000000000005709 190.0
LYD3_k127_174405_7 PFAM GDSL-like Lipase Acylhydrolase - - - 0.0000000000000000000000000000000000000000000131 166.0
LYD3_k127_174405_8 FeS assembly protein IscX - - - 0.00000000000000000000000000000000000000000008318 160.0
LYD3_k127_174405_9 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000005716 115.0
LYD3_k127_1744450_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 492.0
LYD3_k127_1744450_1 Peptidase, M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 332.0
LYD3_k127_1744450_2 Domain of unknown function (DUF4292) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001102 265.0
LYD3_k127_1744450_3 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000007178 245.0
LYD3_k127_1744450_4 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.0000000000000000000000000000000000000000000000000000000000003978 214.0
LYD3_k127_1744450_5 N-acetyl-alpha-D-glucosaminyl L-malate synthase K00754 - - 0.0000000000000000000000000000000000000000000000000000001312 197.0
LYD3_k127_1752060_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 7.963e-206 648.0
LYD3_k127_1752060_1 S53, subtilisin kexin sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 475.0
LYD3_k127_1752060_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000001167 254.0
LYD3_k127_1752060_3 - - - - 0.00000000000000000000000000000000000000000000000000000000403 209.0
LYD3_k127_1757106_0 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000001435 227.0
LYD3_k127_1757106_1 PAAR motif - - - 0.000000000003105 79.0
LYD3_k127_1758943_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 535.0
LYD3_k127_1758943_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 411.0
LYD3_k127_1758943_2 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005586 385.0
LYD3_k127_1758943_3 Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide K08641 - 3.4.13.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002934 282.0
LYD3_k127_1758943_4 Protein of unknown function (DUF952) - - - 0.00000000000000000000004695 102.0
LYD3_k127_1764322_0 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 507.0
LYD3_k127_1764322_1 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 411.0
LYD3_k127_1764322_2 TIGRFAM gliding motility-associated lipoprotein GldD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006708 256.0
LYD3_k127_1764322_3 Single-stranded DNA-binding protein K03111 - - 0.0000000000000000000000000000000000000000000000000000000000000000002705 231.0
LYD3_k127_1772942_0 TonB-dependent receptor - - - 2.26e-277 874.0
LYD3_k127_1772942_1 TonB-dependent receptor - - - 0.000000001123 62.0
LYD3_k127_177474_0 Proton-translocating NADH-quinone oxidoreductase, chain L K00341 - 1.6.5.3 5.082e-269 842.0
LYD3_k127_177474_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 554.0
LYD3_k127_177474_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000000001528 151.0
LYD3_k127_177474_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000001315 121.0
LYD3_k127_1787787_0 NAD dependent epimerase dehydratase family K01784,K02473 - 5.1.3.2,5.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 477.0
LYD3_k127_1787787_1 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005037 445.0
LYD3_k127_1787787_2 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002323 268.0
LYD3_k127_1789002_0 Peptidase family M1 domain K01256 - 3.4.11.2 1.077e-297 941.0
LYD3_k127_1789002_1 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007206 314.0
LYD3_k127_1789002_2 Protein involved in cellulose biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 309.0
LYD3_k127_1789002_3 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003723 298.0
LYD3_k127_1789002_4 Asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000005766 246.0
LYD3_k127_1792483_0 TonB-dependent receptor - - - 6.44e-246 777.0
LYD3_k127_1792483_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 393.0
LYD3_k127_1792483_2 Sugar nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000618 386.0
LYD3_k127_1792483_3 Inward rectifier potassium channel K08715 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003366 370.0
LYD3_k127_1792483_4 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006012 267.0
LYD3_k127_1792483_5 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000000000000005337 151.0
LYD3_k127_1799994_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001831 263.0
LYD3_k127_1799994_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000007039 207.0
LYD3_k127_1799994_2 PAS domain - - - 0.000000000000000000000000000000000000000000000000000001539 193.0
LYD3_k127_1822443_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 1.014e-259 805.0
LYD3_k127_1822443_1 SPFH domain / Band 7 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 488.0
LYD3_k127_1822443_2 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile K01241 - 3.2.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 426.0
LYD3_k127_1822443_3 ATP-NAD kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 413.0
LYD3_k127_1822443_4 Type I restriction enzyme R protein N terminus (HSDR_N) - - - 0.0000000000000000000000000000000000000000000000000000000002376 205.0
LYD3_k127_1822443_5 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000001516 139.0
LYD3_k127_1846259_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 383.0
LYD3_k127_1846259_1 methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 353.0
LYD3_k127_1846259_2 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001804 279.0
LYD3_k127_1846259_3 Vitamin B12 dependent methionine synthase, activation domain - - - 0.000000000000000000000000000000000000000000001692 173.0
LYD3_k127_1846259_4 phosphohydrolase - - - 0.000000002779 62.0
LYD3_k127_1846259_5 - - - - 0.00000001981 60.0
LYD3_k127_1877058_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1289.0
LYD3_k127_1877058_1 Cupin domain - - - 0.0007066 46.0
LYD3_k127_1886525_0 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 1.075e-208 668.0
LYD3_k127_189594_0 Phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007987 587.0
LYD3_k127_189594_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001003 273.0
LYD3_k127_189594_2 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.0000000000000000000000000000000001716 136.0
LYD3_k127_189594_4 hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000744 127.0
LYD3_k127_189594_5 Uncharacterized ACR, COG1993 K09137 - - 0.000316 44.0
LYD3_k127_1896332_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.0 1112.0
LYD3_k127_1896332_1 - - - - 4.631e-209 696.0
LYD3_k127_1896332_2 peptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 348.0
LYD3_k127_1898407_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281 569.0
LYD3_k127_1898407_1 Fe-S oxidoreductase K18928 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005747 404.0
LYD3_k127_1898407_2 COGs COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 315.0
LYD3_k127_1898407_3 COG2041 Sulfite oxidase K07147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002591 312.0
LYD3_k127_1898407_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000009058 246.0
LYD3_k127_1898407_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003471 247.0
LYD3_k127_1898407_6 EVE domain - - - 0.000000000000000000000000000000000000000000000000000000000000005364 218.0
LYD3_k127_1898407_7 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000001844 214.0
LYD3_k127_1917429_0 Catalyzes the conversion of dihydroorotate to orotate K00226,K17723 - 1.3.1.1,1.3.98.1 4.436e-252 780.0
LYD3_k127_1917429_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266,K17722 - 1.3.1.1,1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002296 343.0
LYD3_k127_1929407_0 COG1233 Phytoene dehydrogenase and related K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 2.246e-213 672.0
LYD3_k127_1929407_1 Squalene phytoene synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 389.0
LYD3_k127_1929407_2 TIGRFAM isopentenyl-diphosphate delta-isomerase, type 1 K01823 - 5.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000757 246.0
LYD3_k127_1929407_3 Fatty acid hydroxylase superfamily K15746 - 1.14.15.24 0.000000000000000000000000000000000000000003176 156.0
LYD3_k127_1929407_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000341 109.0
LYD3_k127_1952928_0 transcriptional regulator (AraC family) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 493.0
LYD3_k127_1952928_1 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 466.0
LYD3_k127_1952928_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002219 271.0
LYD3_k127_1952928_3 ABC transporter K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000001951 268.0
LYD3_k127_1952928_4 Cytochrome c - - - 0.00000000000000000007335 93.0
LYD3_k127_1952928_5 - - - - 0.00000002003 61.0
LYD3_k127_1952928_6 tRNA_anti-like - - - 0.000001791 54.0
LYD3_k127_1980128_0 COG2373 Large extracellular alpha-helical protein - - - 2.626e-219 706.0
LYD3_k127_1980128_1 PFAM PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005434 353.0
LYD3_k127_1980128_2 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000008427 202.0
LYD3_k127_1988691_0 Belongs to the helicase family. UvrD subfamily K03657 - 3.6.4.12 4.677e-259 807.0
LYD3_k127_199566_0 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000787 512.0
LYD3_k127_199566_1 Ion transport protein - - - 0.000000000000000000000000000000000000000000000000000000001314 208.0
LYD3_k127_202064_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1045.0
LYD3_k127_202064_1 peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000962 541.0
LYD3_k127_202064_2 Amidophosphoribosyltransferase K00764 - 2.4.2.14 0.00004733 48.0
LYD3_k127_2026526_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 1.328e-206 649.0
LYD3_k127_2026526_1 Sortilin, neurotensin receptor 3, - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001063 286.0
LYD3_k127_2026526_2 Glycosyl transferase family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002491 248.0
LYD3_k127_2026526_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000167 226.0
LYD3_k127_2026526_4 Glycosyl transferase family 1 - - - 0.00000000000000000000000000000003291 130.0
LYD3_k127_2026526_5 - - - - 0.00000000000000000000000000001259 124.0
LYD3_k127_2026526_6 - - - - 0.00000001154 66.0
LYD3_k127_2028383_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 4.77e-215 670.0
LYD3_k127_2028383_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007527 319.0
LYD3_k127_2028383_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000001047 225.0
LYD3_k127_2028383_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000003199 202.0
LYD3_k127_2028383_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.000000000000000000000000000000000000000000301 159.0
LYD3_k127_203164_0 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000004097 201.0
LYD3_k127_203164_1 Ig domain protein group 2 domain protein - - - 0.00000000000000000000000000000000000000000003134 167.0
LYD3_k127_203164_2 PFAM Aminotransferase class I and II K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.0000000000000000000000000000000000000000836 151.0
LYD3_k127_203164_3 PFAM Aminotransferase class I and II K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.0002274 44.0
LYD3_k127_203599_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 304.0
LYD3_k127_203599_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000032 184.0
LYD3_k127_203599_2 aminotransferase class I and II - - - 0.000000000000000000000000000000000000008382 148.0
LYD3_k127_2038619_0 Tetratricopeptide repeat protein - - - 4.466e-250 803.0
LYD3_k127_2038619_1 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 3.35e-202 640.0
LYD3_k127_2038619_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000000000000001055 157.0
LYD3_k127_2038619_3 peptidase M23 - - - 0.0000000000000000000000000000000003848 135.0
LYD3_k127_2048113_0 receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 501.0
LYD3_k127_2048310_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1416.0
LYD3_k127_2048310_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001262 546.0
LYD3_k127_2048310_2 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 382.0
LYD3_k127_2048310_3 AAA ATPase central domain protein - - - 0.00000000000000000000000000000000008474 140.0
LYD3_k127_2058194_0 PFAM Aminotransferase class I and II K14287 - 2.6.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 602.0
LYD3_k127_2058194_1 (SAM)-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000003383 227.0
LYD3_k127_2058194_2 PFAM EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000051 222.0
LYD3_k127_2058194_3 - - - - 0.0000001632 64.0
LYD3_k127_2073192_0 alpha-2-macroglobulin domain protein K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 348.0
LYD3_k127_2073192_1 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000000000000000000000000000000158 160.0
LYD3_k127_2073192_2 Diacylglycerol kinase catalytic domain - - - 0.000000000000000000000000000000000002917 149.0
LYD3_k127_2086729_0 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.0 1068.0
LYD3_k127_2086729_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 316.0
LYD3_k127_2086729_2 translation initiation factor activity K02487,K13582 - - 0.00000000000000000000000000000000000000000000000000000001695 213.0
LYD3_k127_2086729_4 - - - - 0.0000000004652 61.0
LYD3_k127_2102269_0 ribonuclease, Rne Rng family K08301 - - 5.811e-281 869.0
LYD3_k127_2102269_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 1.409e-246 766.0
LYD3_k127_2102269_10 Belongs to the bacterial histone-like protein family K03530 - - 0.00000000000000000000000000000000000000000000000000002406 190.0
LYD3_k127_2102269_11 - - - - 0.0000003789 51.0
LYD3_k127_2102269_2 PFAM PSP1 C-terminal conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008383 610.0
LYD3_k127_2102269_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008919 548.0
LYD3_k127_2102269_4 COG2812 DNA polymerase III, gamma tau subunits K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 509.0
LYD3_k127_2102269_5 PFAM glycoside hydrolase family 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007627 458.0
LYD3_k127_2102269_6 PFAM Peptidase, membrane zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 328.0
LYD3_k127_2102269_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 304.0
LYD3_k127_2102269_8 PFAM Phosphoribosyl transferase domain K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004379 278.0
LYD3_k127_2102269_9 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000001044 240.0
LYD3_k127_211519_0 Amidohydrolase family - - - 9.289e-288 888.0
LYD3_k127_211519_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 1.036e-265 824.0
LYD3_k127_211519_2 endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 297.0
LYD3_k127_211711_0 Subtilase family - - - 5.037e-199 650.0
LYD3_k127_211711_1 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 395.0
LYD3_k127_211711_2 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 330.0
LYD3_k127_211711_3 Dual-action HEIGH metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004585 266.0
LYD3_k127_211711_4 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000001285 250.0
LYD3_k127_212406_0 Belongs to the proline racemase family K12658 - 5.1.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 552.0
LYD3_k127_212406_1 PFAM Aldehyde dehydrogenase K13877 - 1.2.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006884 330.0
LYD3_k127_212406_2 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000001229 175.0
LYD3_k127_213535_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02472 - 1.1.1.336 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 503.0
LYD3_k127_213535_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009612 459.0
LYD3_k127_213535_10 Flavin containing amine oxidoreductase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.000002238 51.0
LYD3_k127_213535_2 ADP-glyceromanno-heptose 6-epimerase activity K01710,K01784 - 4.2.1.46,5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 400.0
LYD3_k127_213535_3 MerR family K22491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 391.0
LYD3_k127_213535_4 COG4464 Capsular polysaccharide biosynthesis protein K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000473 282.0
LYD3_k127_213535_5 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000436 250.0
LYD3_k127_213535_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004765 243.0
LYD3_k127_213535_7 Hexapeptide repeat of succinyl-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000003255 218.0
LYD3_k127_213535_8 Formyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000001054 216.0
LYD3_k127_213535_9 methyltransferase - - - 0.0000000000002277 73.0
LYD3_k127_2139545_0 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 1.211e-264 819.0
LYD3_k127_2139545_1 Chaperone of endosialidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 474.0
LYD3_k127_2139545_2 2-dehydro-3-deoxyphosphooctonate aldolase K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 417.0
LYD3_k127_2139545_3 Chaperone of endosialidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006578 431.0
LYD3_k127_2139545_4 outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002388 248.0
LYD3_k127_2146748_0 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 1.442e-207 658.0
LYD3_k127_2146748_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 524.0
LYD3_k127_2146748_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455 329.0
LYD3_k127_2146748_3 GIY-YIG catalytic domain K07461 - - 0.000000000000000000001743 96.0
LYD3_k127_2146748_5 - - - - 0.000000002416 65.0
LYD3_k127_2147406_0 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002589 526.0
LYD3_k127_2147406_1 PFAM ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003348 428.0
LYD3_k127_2147406_2 COGs COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006269 403.0
LYD3_k127_2147406_3 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 288.0
LYD3_k127_2147406_4 COGs COG1566 Multidrug resistance efflux pump K01993 - - 0.0000000000000000000000000000000000000000000000000000000000000006681 220.0
LYD3_k127_2147406_5 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000004385 201.0
LYD3_k127_215303_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 1.391e-249 784.0
LYD3_k127_2167123_0 Fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 480.0
LYD3_k127_2167123_1 PFAM Signal transduction histidine kinase, internal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 419.0
LYD3_k127_2167123_2 Aspartyl/Asparaginyl beta-hydroxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 293.0
LYD3_k127_2167123_3 fatty acid desaturase K00508 - 1.14.19.3 0.00000000000000000000000000000000000000000000000000000000000001033 229.0
LYD3_k127_2167123_4 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000005587 222.0
LYD3_k127_2167123_5 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000005082 197.0
LYD3_k127_2167123_6 ATPase involved in DNA repair - - - 0.00000003437 67.0
LYD3_k127_2167366_0 S1 P1 Nuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008652 317.0
LYD3_k127_2167366_1 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004521 259.0
LYD3_k127_2167366_10 - - - - 0.00000000000000000008989 91.0
LYD3_k127_2167366_11 Protein of unknown function (DUF2892) - - - 0.000000000000000004143 85.0
LYD3_k127_2167366_13 - - - - 0.00003355 52.0
LYD3_k127_2167366_2 redox protein regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008315 250.0
LYD3_k127_2167366_3 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001047 254.0
LYD3_k127_2167366_4 Signal transduction histidine kinase, LytS - - - 0.0000000000000000000000000000000000000000000000000000000000004488 224.0
LYD3_k127_2167366_5 PFAM Bacterial regulatory proteins, crp family K01420 - - 0.00000000000000000000000000000000000000000000000009273 184.0
LYD3_k127_2167366_6 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000005461 162.0
LYD3_k127_2167366_7 Thioredoxin K03671 - - 0.0000000000000000000000000000000000000006941 150.0
LYD3_k127_2167366_8 PFAM Rhodanese-like domain - - - 0.000000000000000000000000001173 113.0
LYD3_k127_2167366_9 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000000000000000000002186 100.0
LYD3_k127_2193114_0 Amidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006252 601.0
LYD3_k127_2193114_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 594.0
LYD3_k127_2193114_2 Releases the N-terminal proline from various substrates K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 559.0
LYD3_k127_2193114_3 PFAM Bacterial regulatory helix-turn-helix proteins, AraC family - - - 0.0000000000000000000000000000000000000000000000000000000000001502 218.0
LYD3_k127_2195275_0 Domain of unknown function (DUF5103) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233 456.0
LYD3_k127_2195275_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K08314 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 392.0
LYD3_k127_2209800_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 412.0
LYD3_k127_2209800_1 benzoyl-CoA reductase K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000003821 181.0
LYD3_k127_2209800_2 hemerythrin HHE cation binding domain - - - 0.00000000001019 72.0
LYD3_k127_2227475_0 B12 binding domain K00548 - 2.1.1.13 0.0 1388.0
LYD3_k127_2227475_1 PFAM Glycoside hydrolase 97 K01187,K21574 - 3.2.1.20,3.2.1.3 8.581e-243 758.0
LYD3_k127_2227475_2 Methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005682 561.0
LYD3_k127_2227475_3 hydrolase K01560,K07025 - 3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005011 268.0
LYD3_k127_2227475_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000002019 120.0
LYD3_k127_2227475_5 RDD family - - - 0.000000000000000000000009336 106.0
LYD3_k127_2227475_6 PQ loop repeat K15383 - - 0.0000000000000000000003924 98.0
LYD3_k127_224540_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 600.0
LYD3_k127_224540_1 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 488.0
LYD3_k127_224540_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 454.0
LYD3_k127_224540_3 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 389.0
LYD3_k127_224540_4 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 377.0
LYD3_k127_224540_5 Outer membrane protein beta-barrel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 329.0
LYD3_k127_224540_6 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000002113 173.0
LYD3_k127_224540_7 - - - - 0.000000000000000000000000005935 119.0
LYD3_k127_228750_0 Peptidase, family M20 M25 M40 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 348.0
LYD3_k127_228750_1 - - - - 0.000001098 61.0
LYD3_k127_2364209_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762,K13421 - 2.4.2.10,4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 335.0
LYD3_k127_2364209_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004778 272.0
LYD3_k127_2364209_2 Belongs to the Nudix hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002385 243.0
LYD3_k127_2364209_3 protein possibly involved in aromatic compounds catabolism K19222 - 3.1.2.28 0.000000000000000000000000000000000000000000000000000000001522 203.0
LYD3_k127_2364209_4 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000001609 159.0
LYD3_k127_2364209_5 mercury ion transmembrane transporter activity K08364 - - 0.00000000000000000000000000002664 123.0
LYD3_k127_2364209_6 Late embryogenesis abundant protein - - - 0.00005571 47.0
LYD3_k127_2373222_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 447.0
LYD3_k127_2373222_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 443.0
LYD3_k127_2373222_10 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000001897 232.0
LYD3_k127_2373222_11 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000003984 229.0
LYD3_k127_2373222_12 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001917 196.0
LYD3_k127_2373222_13 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000000000001044 196.0
LYD3_k127_2373222_14 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000001341 171.0
LYD3_k127_2373222_15 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000000000106 160.0
LYD3_k127_2373222_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000004253 157.0
LYD3_k127_2373222_17 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000009487 153.0
LYD3_k127_2373222_18 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000003042 150.0
LYD3_k127_2373222_19 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000004214 148.0
LYD3_k127_2373222_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 345.0
LYD3_k127_2373222_20 alginic acid biosynthetic process - - - 0.00000000000000000000000000007805 124.0
LYD3_k127_2373222_21 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000003729 110.0
LYD3_k127_2373222_22 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000000008476 87.0
LYD3_k127_2373222_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 341.0
LYD3_k127_2373222_4 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 334.0
LYD3_k127_2373222_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 307.0
LYD3_k127_2373222_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 301.0
LYD3_k127_2373222_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001301 252.0
LYD3_k127_2373222_8 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003769 249.0
LYD3_k127_2373222_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000001267 243.0
LYD3_k127_2381486_0 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 1.162e-201 634.0
LYD3_k127_2381486_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 559.0
LYD3_k127_2381486_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 397.0
LYD3_k127_2381486_3 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001597 244.0
LYD3_k127_2381486_4 belongs to the carbohydrate kinase PfkB family K00917,K16370 - 2.7.1.11,2.7.1.144 0.000000000000000000000000000000000000000003806 155.0
LYD3_k127_2381486_5 COGs COG3467 flavin-nucleotide-binding protein K07005 - - 0.000000000000000000000000000000000000005851 150.0
LYD3_k127_2388398_0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00261,K00262 - 1.4.1.3,1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000478 366.0
LYD3_k127_2388398_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.0000000000000000009219 85.0
LYD3_k127_2388398_3 - - - - 0.0000000000000298 79.0
LYD3_k127_2388398_4 PFAM polysaccharide biosynthesis protein K03328 - - 0.0003987 44.0
LYD3_k127_2398043_0 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 370.0
LYD3_k127_2398043_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006999 318.0
LYD3_k127_2398043_2 Metallo-peptidase family M12 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 315.0
LYD3_k127_2398043_3 - - - - 0.00000000000000000000000000000000000000000008604 165.0
LYD3_k127_2398043_4 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000403 120.0
LYD3_k127_2409305_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 536.0
LYD3_k127_2409305_1 Domain of unknown function (DUF4835) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007392 377.0
LYD3_k127_2409305_2 PFAM Coenzyme A transferase K01027,K01028,K01031,K01034 - 2.8.3.5,2.8.3.6,2.8.3.8,2.8.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 362.0
LYD3_k127_2409305_3 outer membrane assembly lipoprotein YfiO K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009783 309.0
LYD3_k127_2409305_4 RNA polymerase - - - 0.0000000000000000000000000000000000000000004396 159.0
LYD3_k127_2409305_5 chlorophyll binding K03286 - - 0.00000000000000000000000000000008342 124.0
LYD3_k127_2409305_6 Domain of unknown function (DUF4296) - - - 0.0000000000000000001272 94.0
LYD3_k127_2426931_0 Hydrolase with alpha beta fold protein K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 308.0
LYD3_k127_2426931_1 peptidase K01297 - 3.4.17.13 0.0000000000000000000000000000000002474 132.0
LYD3_k127_24439_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 1.505e-224 701.0
LYD3_k127_24439_1 PKD domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003471 272.0
LYD3_k127_24439_2 SprB repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001022 284.0
LYD3_k127_24439_3 PKD domain containing protein - - - 0.00000000000000000000000000000000003166 157.0
LYD3_k127_24439_4 PFAM chorismate binding K01665,K03342 - 2.6.1.85,4.1.3.38 0.00000000000000000000000000005136 121.0
LYD3_k127_24439_6 metallopeptidase activity - - - 0.000000000000000000009443 109.0
LYD3_k127_24439_7 IgGFc binding protein - - - 0.000002216 60.0
LYD3_k127_2471311_0 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 400.0
LYD3_k127_2471311_1 Protease prsW family - - - 0.000000000000000000000000000000000000000000000000000000001871 209.0
LYD3_k127_2471311_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000002708 168.0
LYD3_k127_2482065_0 ABC transporter K06158 - - 1.251e-229 715.0
LYD3_k127_2482065_1 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 511.0
LYD3_k127_2482065_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000007177 185.0
LYD3_k127_2504684_0 PFAM Aminotransferase class I and II K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 537.0
LYD3_k127_2504684_1 Repeat of Unknown Function (DUF347) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 325.0
LYD3_k127_255895_0 alanine dehydrogenase K00259 - 1.4.1.1 1.861e-229 714.0
LYD3_k127_255895_1 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000003528 67.0
LYD3_k127_2559829_0 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 499.0
LYD3_k127_2559829_1 DNA mismatch repair protein MutS - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001237 274.0
LYD3_k127_2559829_2 DNA mismatch repair protein MutS - - - 0.0000000000000000000000000000000000000000005297 158.0
LYD3_k127_2560131_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 589.0
LYD3_k127_2560131_1 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 566.0
LYD3_k127_2560131_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003765 533.0
LYD3_k127_2560131_3 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 395.0
LYD3_k127_2560131_4 PFAM Biopolymer transport protein ExbD TolR - - - 0.000000000000000000000000000000000000000000000000000000000000000000001091 242.0
LYD3_k127_2560131_5 PFAM Biopolymer transport protein ExbD TolR - - - 0.00000000000000000000000000000000000000000000000000000000000001965 221.0
LYD3_k127_2560131_6 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000001791 169.0
LYD3_k127_2587725_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 503.0
LYD3_k127_2587725_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004642 329.0
LYD3_k127_2587725_2 NmrA-like family - - - 0.00000000000000000000000000001147 121.0
LYD3_k127_25907_0 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 552.0
LYD3_k127_25907_1 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000845 505.0
LYD3_k127_25907_2 alcohol dehydrogenase K19714 - 1.1.3.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003596 467.0
LYD3_k127_25907_3 KR domain K14189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 373.0
LYD3_k127_25907_4 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000003059 248.0
LYD3_k127_25907_5 Protein of unknown function (DUF2480) - - - 0.0000000000000000000000000000000000000000000000000000000000000002824 226.0
LYD3_k127_260548_0 B12 binding domain K00548 - 2.1.1.13 1.278e-273 849.0
LYD3_k127_2615406_0 PFAM TonB-dependent Receptor Plug Domain - - - 5.761e-297 922.0
LYD3_k127_2635041_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.812e-215 676.0
LYD3_k127_2635041_1 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003533 245.0
LYD3_k127_2635041_2 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000003975 211.0
LYD3_k127_2635041_3 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000002003 181.0
LYD3_k127_2635041_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000003532 148.0
LYD3_k127_2638340_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 556.0
LYD3_k127_2638340_1 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 328.0
LYD3_k127_2638340_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000003046 97.0
LYD3_k127_2642839_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006479 403.0
LYD3_k127_2642839_1 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 312.0
LYD3_k127_2642839_2 Bacterial regulatory proteins, crp family - - - 0.00000000000000000000000000000000000000000000000000000001189 206.0
LYD3_k127_2642839_3 DNA-binding transcription factor activity - - - 0.000000000000000000000000000000000000000001303 160.0
LYD3_k127_2642839_4 - - - - 0.000000000000000001588 96.0
LYD3_k127_2642839_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000017 76.0
LYD3_k127_2642839_6 PFAM Bacterial Ig-like domain (group 2) - - - 0.00002112 57.0
LYD3_k127_2642839_7 Cytochrome c - - - 0.00003974 51.0
LYD3_k127_2677268_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 1.382e-205 644.0
LYD3_k127_2677268_1 PUA domain containing protein K06969 - 2.1.1.191 7.285e-205 644.0
LYD3_k127_2677268_2 protein CHP03519, membrane, Bacteroidetes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 396.0
LYD3_k127_2677268_3 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 304.0
LYD3_k127_2677268_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000002461 234.0
LYD3_k127_2677268_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000099 221.0
LYD3_k127_2677268_6 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000001147 132.0
LYD3_k127_2678562_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5e-324 1004.0
LYD3_k127_2678562_1 PFAM Biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000002202 258.0
LYD3_k127_2678562_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000000115 182.0
LYD3_k127_2678562_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000001503 179.0
LYD3_k127_2678948_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 572.0
LYD3_k127_2678948_1 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 528.0
LYD3_k127_2678948_2 COG1512 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000005171 239.0
LYD3_k127_2678948_3 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000002486 223.0
LYD3_k127_2678948_4 TPM domain - - - 0.0000000000000000000000000000000000000000000000000002241 188.0
LYD3_k127_2681115_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002295 514.0
LYD3_k127_2681115_1 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K15460 - 2.1.1.223 0.0000000000000000000000000000000000000000000000000000000000007423 219.0
LYD3_k127_2681115_2 Alanine dehydrogenase/PNT, N-terminal domain - - - 0.000000000000000000000000000000000000000000000003146 175.0
LYD3_k127_2681115_3 Alanine dehydrogenase/PNT, N-terminal domain - - - 0.000000000000000002635 85.0
LYD3_k127_2690204_0 SusD family K21572 - - 5.119e-220 692.0
LYD3_k127_2690204_1 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000003253 213.0
LYD3_k127_2691885_0 PFAM Cytochrome c assembly protein K02198 - - 1.424e-293 917.0
LYD3_k127_2691885_1 Fatty acid desaturase K00508 - 1.14.19.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 492.0
LYD3_k127_2691885_2 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 381.0
LYD3_k127_2691885_3 Domain of unknown function (DUF4294) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001014 246.0
LYD3_k127_2692996_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009034 430.0
LYD3_k127_2692996_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 307.0
LYD3_k127_2692996_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000000000000000000000000000001438 243.0
LYD3_k127_2692996_3 - - - - 0.000009605 52.0
LYD3_k127_2694772_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 543.0
LYD3_k127_2694772_1 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006111 539.0
LYD3_k127_2694772_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000383 275.0
LYD3_k127_2694772_3 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000000000000000000000000000000002887 178.0
LYD3_k127_2694772_4 - - - - 0.0000000000000000000000005315 109.0
LYD3_k127_2694772_5 Belongs to the small heat shock protein (HSP20) family - - - 0.000000000000004813 81.0
LYD3_k127_2698908_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009791 583.0
LYD3_k127_2698908_1 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 321.0
LYD3_k127_2698908_2 CAAX amino terminal protease family K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005295 251.0
LYD3_k127_2699918_0 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 423.0
LYD3_k127_2699918_1 Protein of unknown function (DUF2911) - - - 0.00000000000000000000000000000000000000000000000000000000000697 213.0
LYD3_k127_2699918_2 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000000000003865 160.0
LYD3_k127_2712989_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 494.0
LYD3_k127_2712989_1 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 366.0
LYD3_k127_2712989_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 331.0
LYD3_k127_2720663_0 Cysteine synthase K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 509.0
LYD3_k127_2720663_1 PFAM Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000007634 259.0
LYD3_k127_2720663_2 Belongs to the SOS response-associated peptidase family - - - 0.00000000000000000000000000000000000000000000000000000001287 206.0
LYD3_k127_2725479_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 538.0
LYD3_k127_2725479_1 Domain of unknown function (DUF3471) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 542.0
LYD3_k127_2725479_2 COGs COG3653 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 434.0
LYD3_k127_2725479_3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001938 235.0
LYD3_k127_2725479_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000001534 196.0
LYD3_k127_2725479_5 Pfam DinB family - - - 0.00000000000000000000000000000000000000000000000000003253 196.0
LYD3_k127_2725479_6 Transposase IS200 like K07491 - - 0.0000000000000000000000000000000000000000638 155.0
LYD3_k127_2729857_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000332 467.0
LYD3_k127_2729857_1 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000134 243.0
LYD3_k127_2729857_2 tRNA m6t6A37 methyltransferase activity K11261 - 1.2.7.12 0.000000000000000000000000000000000000000000000000000001198 196.0
LYD3_k127_2729857_3 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000007073 101.0
LYD3_k127_2736260_0 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 372.0
LYD3_k127_2736260_1 - - - - 0.000000000000000000000000000002324 130.0
LYD3_k127_2736260_3 - - - - 0.0000000000000002763 88.0
LYD3_k127_2742956_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 334.0
LYD3_k127_2742956_1 DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 286.0
LYD3_k127_2746463_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 1.576e-264 833.0
LYD3_k127_2746463_1 PFAM Formylglycine-generating sulfatase enzyme - - - 3.263e-217 682.0
LYD3_k127_2746463_2 COGs COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284 624.0
LYD3_k127_2746463_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002037 475.0
LYD3_k127_2746463_4 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 443.0
LYD3_k127_2746463_5 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000002452 248.0
LYD3_k127_2746463_6 Domain of unknown function (DUF4271) - - - 0.00000000000000000000000000000000000000000000000000000000004481 217.0
LYD3_k127_2746463_7 TIGRFAM gliding motility-associated protein GldL - - - 0.0000002637 54.0
LYD3_k127_2748160_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1192.0
LYD3_k127_2748160_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 9.385e-201 634.0
LYD3_k127_2748160_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 505.0
LYD3_k127_2748160_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000479 500.0
LYD3_k127_2748160_4 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 417.0
LYD3_k127_2748160_5 PFAM Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001198 277.0
LYD3_k127_2748160_6 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.0000000000000000000000004726 112.0
LYD3_k127_2760636_0 Gliding motility-associated protein GldM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 389.0
LYD3_k127_2760636_1 TIGRFAM gliding motility associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 332.0
LYD3_k127_2760636_2 TIGRFAM gliding motility-associated protein GldL - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009409 260.0
LYD3_k127_278233_0 SNF2 family N-terminal domain K08282 - 2.7.11.1 0.0 1800.0
LYD3_k127_278233_1 Belongs to the ComB family K05979 - 3.1.3.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 361.0
LYD3_k127_278233_2 receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006711 249.0
LYD3_k127_278233_3 Cell division protein - - - 0.000000000000000000000000000000000000000000000000000000000002209 212.0
LYD3_k127_278233_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000009536 62.0
LYD3_k127_278233_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00002496 49.0
LYD3_k127_278463_0 - - - - 0.0000000000000000000000000000000000000000000000000001709 189.0
LYD3_k127_278463_2 Membrane - - - 0.0000000000000000000000000000000000000000000001249 179.0
LYD3_k127_278463_4 Pfam NmrA-like family - - - 0.000002675 49.0
LYD3_k127_278463_5 Outer membrane protein beta-barrel domain K11934 - - 0.00002238 53.0
LYD3_k127_2789297_0 Radical SAM K11784 - 1.21.98.1 1.645e-217 677.0
LYD3_k127_2789297_1 Peptidase M16 K07263 - - 1.638e-204 643.0
LYD3_k127_2789297_2 Aspartyl protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 460.0
LYD3_k127_2789297_3 Peptidase M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000779 284.0
LYD3_k127_2789297_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000177 253.0
LYD3_k127_2789297_5 - - - - 0.000000000000000000004166 98.0
LYD3_k127_2789297_6 Domain of unknown function (DUF3817) - - - 0.00000000000000001063 86.0
LYD3_k127_2789297_7 Cytochrome c - - - 0.000000006668 57.0
LYD3_k127_2818381_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.897e-249 774.0
LYD3_k127_2837113_0 photosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 357.0
LYD3_k127_2837113_1 - - - - 0.0000000000000000000000000000000000000000000000000000001553 213.0
LYD3_k127_2837113_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000001656 186.0
LYD3_k127_2837113_3 endonuclease containing a URI domain K07461 - - 0.0000000000009104 69.0
LYD3_k127_2837113_4 endonuclease containing a URI domain K07461 - - 0.0000017 50.0
LYD3_k127_28381_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 2.524e-287 893.0
LYD3_k127_28381_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 4.877e-266 822.0
LYD3_k127_28381_2 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 2.011e-212 664.0
LYD3_k127_28381_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 509.0
LYD3_k127_28381_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 291.0
LYD3_k127_28381_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000001872 248.0
LYD3_k127_28381_6 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000464 194.0
LYD3_k127_28381_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000000000000000000000000002755 170.0
LYD3_k127_28381_8 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000004288 156.0
LYD3_k127_288996_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 375.0
LYD3_k127_288996_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000001354 177.0
LYD3_k127_2906961_0 elongation factor G domain IV K02355 - - 0.0 1267.0
LYD3_k127_2906961_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 1.165e-298 929.0
LYD3_k127_2906961_2 C-terminal four TMM region of protein-O-mannosyltransferase K00728,K06113,K12685 - 2.4.1.109,3.2.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000001357 278.0
LYD3_k127_2906961_3 - - - - 0.00000000000000000000000000000000000000000000000000000000002298 209.0
LYD3_k127_2906961_4 CYTH domain - - - 0.000000000000000000000000000000000000000000000000003071 187.0
LYD3_k127_2906961_5 PFAM Peptidase family M48 - - - 0.000000000000000000000000000000001123 130.0
LYD3_k127_2906961_7 Leukemia inhibitory factor K05058 GO:0000902,GO:0001959,GO:0003674,GO:0004888,GO:0004896,GO:0004897,GO:0004923,GO:0005102,GO:0005126,GO:0005127,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0005887,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007275,GO:0007399,GO:0008150,GO:0008284,GO:0009653,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010656,GO:0010660,GO:0010941,GO:0014070,GO:0016020,GO:0016021,GO:0016043,GO:0019221,GO:0019838,GO:0019955,GO:0022008,GO:0023051,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031099,GO:0031100,GO:0031175,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034097,GO:0038023,GO:0038165,GO:0042127,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043235,GO:0044425,GO:0044459,GO:0044464,GO:0046982,GO:0046983,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048861,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0060548,GO:0060759,GO:0065007,GO:0070120,GO:0070887,GO:0071310,GO:0071345,GO:0071840,GO:0071944,GO:0120036,GO:0120039 - 0.0005128 53.0
LYD3_k127_2934627_0 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002642 233.0
LYD3_k127_2934627_1 COGs COG1914 Mn2 and Fe2 transporter of the NRAMP family - - - 0.00000000000000000000000000000000000000000000647 166.0
LYD3_k127_2966819_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004719 289.0
LYD3_k127_2966819_1 Phosphoadenosine phosphosulfate reductase K00390,K00957 - 1.8.4.10,1.8.4.8,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000001136 274.0
LYD3_k127_2966819_2 Catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides K01465,K01466 - 3.5.2.3,3.5.2.5 0.0000000000000000000000000000000000000000000000003858 193.0
LYD3_k127_2972207_0 Two component regulator propeller domain protein - - - 7.311e-255 806.0
LYD3_k127_2972207_1 of the RND superfamily K07003 - - 1.589e-210 666.0
LYD3_k127_297519_0 PFAM Glycoside hydrolase, family 77 K00705 - 2.4.1.25 1.909e-316 983.0
LYD3_k127_297519_1 Peptidase family M13 K07386 - - 7.468e-251 792.0
LYD3_k127_297519_2 Mandelate racemase muconate lactonizing enzyme K01776,K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20,5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 572.0
LYD3_k127_297519_3 Belongs to the UbiD family K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000001622 189.0
LYD3_k127_2977113_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 1.338e-231 721.0
LYD3_k127_2977113_1 Belongs to the DEAD box helicase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 609.0
LYD3_k127_2977113_2 N-acetylmuramoyl-L-alanine amidase K01447,K11066 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 334.0
LYD3_k127_2977113_3 N-acetylmuramoyl-L-alanine amidase K01447,K11066 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001341 282.0
LYD3_k127_2977113_4 WG containing repeat - - - 0.000000000000000000000000000000000000000003812 163.0
LYD3_k127_2977113_5 Smr domain - - - 0.0000000000000000000000000003636 115.0
LYD3_k127_2977113_6 Putative beta-lactamase-inhibitor-like, PepSY-like - - - 0.0001991 51.0
LYD3_k127_2978427_0 hemolysin activation secretion protein - - - 8.953e-211 683.0
LYD3_k127_2978427_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 528.0
LYD3_k127_2978427_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008122 431.0
LYD3_k127_2978427_3 Aldehyde dehydrogenase family K00140,K22187 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000001148 125.0
LYD3_k127_2978427_4 - - - - 0.000000000000000000007351 92.0
LYD3_k127_2992939_0 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 494.0
LYD3_k127_2992939_1 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002253 495.0
LYD3_k127_2992939_10 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.000000000000000000000000000000000000008606 165.0
LYD3_k127_2992939_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004163 486.0
LYD3_k127_2992939_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 459.0
LYD3_k127_2992939_4 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 384.0
LYD3_k127_2992939_5 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000007195 256.0
LYD3_k127_2992939_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059,K00216 - 1.1.1.100,1.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000007243 250.0
LYD3_k127_2992939_7 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000352 191.0
LYD3_k127_2992939_8 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000006353 199.0
LYD3_k127_2992939_9 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000001034 176.0
LYD3_k127_3000222_0 AMP-dependent synthetase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006865 452.0
LYD3_k127_3000222_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 365.0
LYD3_k127_3014091_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 300.0
LYD3_k127_3014091_1 Acetyltransferase (GNAT) domain K03828 - - 0.000000000000000000000000000000000000000000000000000000000000000007016 228.0
LYD3_k127_3017960_0 choline dehydrogenase activity - - - 1.119e-319 984.0
LYD3_k127_3017960_1 Gluconate 2-dehydrogenase subunit 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 287.0
LYD3_k127_3017960_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004455 256.0
LYD3_k127_3017960_3 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.000000000000000000000000000000000000000000000000000000000008248 218.0
LYD3_k127_3017960_4 - - - - 0.00000000000000000000000003999 123.0
LYD3_k127_3017960_5 Protein of unknown function, DUF255 - - - 0.0000000000000000000001236 111.0
LYD3_k127_3017960_6 calcium- and calmodulin-responsive adenylate cyclase activity K11904 - - 0.0000000000428 75.0
LYD3_k127_3018867_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1627.0
LYD3_k127_3018867_1 Protein of unknown function (DUF998) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003863 299.0
LYD3_k127_3018867_2 Redoxin - - - 0.00000000000000000000000000000000000000000000000001156 186.0
LYD3_k127_3018867_3 protein related to plant photosystem II stability assembly factor - - - 0.000000000000000000000006605 102.0
LYD3_k127_3018966_0 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 538.0
LYD3_k127_3018966_1 Acyl-protein synthetase, LuxE - - - 0.0000000000000000004943 88.0
LYD3_k127_3027962_0 Domain of unknown function (DUF5118) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 495.0
LYD3_k127_3027962_1 decarboxylase K01585 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 310.0
LYD3_k127_3027962_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000000000000006023 188.0
LYD3_k127_3027962_3 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000231 103.0
LYD3_k127_3040952_0 Organic solvent tolerance protein OstA - - - 3.872e-298 940.0
LYD3_k127_3040952_1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 376.0
LYD3_k127_3040952_2 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 337.0
LYD3_k127_3040952_3 Purine-nucleoside phosphorylase K03784 - 2.4.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006279 331.0
LYD3_k127_3040952_4 Ami_3 K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002773 283.0
LYD3_k127_3040952_5 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000001618 199.0
LYD3_k127_3040952_6 GIY-YIG catalytic domain K07461 - - 0.000000000000000000000000000000009565 130.0
LYD3_k127_3040952_7 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0000000000004701 70.0
LYD3_k127_3056518_0 DNA mismatch repair protein MutS - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 415.0
LYD3_k127_3056518_1 Fungalysin/Thermolysin Propeptide Motif K01400 - 3.4.24.28 0.00000000000000000000000001624 127.0
LYD3_k127_3075198_0 Fe-S oxidoreductase - - - 9.702e-226 705.0
LYD3_k127_3075198_1 Proton-conducting membrane transporter K12141 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 610.0
LYD3_k127_3075198_2 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01835 - 5.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008452 541.0
LYD3_k127_3075198_3 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007823 460.0
LYD3_k127_3075198_4 Predicted periplasmic lipoprotein (DUF2279) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007599 392.0
LYD3_k127_3075198_5 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 383.0
LYD3_k127_3075198_6 Hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000106 152.0
LYD3_k127_3075198_7 NADH dehydrogenase - - - 0.000000003542 58.0
LYD3_k127_3097865_0 dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 338.0
LYD3_k127_3097865_1 Domain of unknown function (DUF3472) - - - 0.0000000000000000000000000000000000000000000000002348 189.0
LYD3_k127_3097865_2 fatty acid desaturase K00507 - 1.14.19.1 0.000005658 49.0
LYD3_k127_3128103_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 421.0
LYD3_k127_3128103_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000002347 115.0
LYD3_k127_3128103_2 - - - - 0.000000000000000000000007832 113.0
LYD3_k127_3128522_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 3.087e-195 613.0
LYD3_k127_3128522_1 Psort location Cytoplasmic, score - - - 0.000000000000000000000000229 112.0
LYD3_k127_3196410_0 chelatase, subunit chli K07391 - - 8.048e-282 871.0
LYD3_k127_3196410_1 ABC transporter K06147 - - 4.548e-281 874.0
LYD3_k127_3196410_2 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004748 543.0
LYD3_k127_3196410_3 Glycosyltransferase family 25 (LPS biosynthesis protein) K07270 - - 0.0000000000000000000000000000000000000000000002324 177.0
LYD3_k127_3208740_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 1.7e-287 897.0
LYD3_k127_3208740_1 Belongs to the BshC family K22136 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 592.0
LYD3_k127_3208740_2 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 484.0
LYD3_k127_3208740_3 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 400.0
LYD3_k127_3208740_4 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 0.000000000001315 69.0
LYD3_k127_322104_0 Amidophosphoribosyltransferase K00764 - 2.4.2.14 1.44e-309 958.0
LYD3_k127_322104_1 Phosphoglycerate mutase family K08296 - - 0.00000000000000000000000000000000000000000000000000000006704 199.0
LYD3_k127_322104_2 EamA-like transporter family - - - 0.000000000000001522 79.0
LYD3_k127_32321_0 Belongs to the aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 1.809e-304 939.0
LYD3_k127_32321_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 581.0
LYD3_k127_32321_2 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 303.0
LYD3_k127_32321_3 uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000002182 184.0
LYD3_k127_32321_4 - - - - 0.0000000000000000002211 94.0
LYD3_k127_3252598_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0 1092.0
LYD3_k127_3252598_1 Esterase lipase - - - 0.000000000000000000000000000000000003309 141.0
LYD3_k127_3252598_2 COG4464 Capsular polysaccharide biosynthesis protein K01104 - 3.1.3.48 0.0000000009741 60.0
LYD3_k127_3263061_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 6.098e-314 966.0
LYD3_k127_3263061_1 COG1228 Imidazolonepropionase and related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 583.0
LYD3_k127_3263061_2 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 451.0
LYD3_k127_3263061_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 392.0
LYD3_k127_3263061_4 Methyltransferase domain - - - 0.0000000000000000000000000000004152 131.0
LYD3_k127_3263061_5 - - - - 0.0005784 51.0
LYD3_k127_3266823_0 homogentisate 12-dioxygenase K00451 - 1.13.11.5 7.163e-236 732.0
LYD3_k127_3266823_1 PFAM Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 408.0
LYD3_k127_3266823_2 Phosphoesterase K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009827 269.0
LYD3_k127_3266823_3 aminotransferase, class I K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000004175 257.0
LYD3_k127_3266823_4 PFAM Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000005009 222.0
LYD3_k127_3266823_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000001832 107.0
LYD3_k127_3305316_0 amino acid K03294 - - 8.143e-266 834.0
LYD3_k127_3305316_1 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005946 457.0
LYD3_k127_3315153_0 COGs COG0488 ATPase components of ABC transporter with duplicated ATPase domains - - - 5.725e-294 906.0
LYD3_k127_3315153_1 PKD domain containing protein - - - 0.0000000000000002777 80.0
LYD3_k127_3318069_0 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 1.217e-230 719.0
LYD3_k127_3318069_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 589.0
LYD3_k127_3318069_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 564.0
LYD3_k127_3318069_3 coproporphyrinogen III oxidase K00228 - 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 515.0
LYD3_k127_3318069_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009129 359.0
LYD3_k127_3318069_5 iron-regulated protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 294.0
LYD3_k127_3318069_6 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000000000000000000000001978 199.0
LYD3_k127_3318069_7 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000003617 204.0
LYD3_k127_3318069_8 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000002844 81.0
LYD3_k127_3351277_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 4.675e-310 959.0
LYD3_k127_3351277_1 COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA K06169 - - 0.000000000000000000000000000000000000002718 147.0
LYD3_k127_3351277_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000001193 134.0
LYD3_k127_3354053_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 9.157e-320 992.0
LYD3_k127_3354053_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005129 558.0
LYD3_k127_3354053_2 Lamin Tail Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 550.0
LYD3_k127_3354053_3 PFAM pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 522.0
LYD3_k127_3354053_4 TIGRFAM TIGR02453 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 296.0
LYD3_k127_3354053_5 Belongs to the glycosyl hydrolase 13 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007953 290.0
LYD3_k127_3354053_6 NUMOD4 motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 284.0
LYD3_k127_3354053_7 T5orf172 domain K07461 - - 0.00000000000000000000000000003103 119.0
LYD3_k127_3354053_8 - - - - 0.0004547 51.0
LYD3_k127_335797_0 Domain of unknown function (DUF4369) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 359.0
LYD3_k127_335797_1 Starch-binding associating with outer membrane - - - 0.000000000000000000000000000000000000000000001745 168.0
LYD3_k127_3374029_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 562.0
LYD3_k127_3374029_1 phosphoesterase, PA-phosphatase related - - - 0.000000000000000000000000000000000000000000000000000000000003555 216.0
LYD3_k127_3374029_2 DHHW protein - - - 0.00000000000000000000000000007992 119.0
LYD3_k127_3374029_3 heme binding K19304 - - 0.000007137 53.0
LYD3_k127_3385196_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 445.0
LYD3_k127_3385196_1 SPTR Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000004362 235.0
LYD3_k127_3390111_0 HAD-hyrolase-like K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007458 345.0
LYD3_k127_3390111_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 293.0
LYD3_k127_3390111_2 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000002905 201.0
LYD3_k127_3391200_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 306.0
LYD3_k127_3391200_1 - - - - 0.00000000000000000000000000000000000000000000000000000005329 198.0
LYD3_k127_3391200_2 Outer membrane protein beta-barrel family - - - 0.0000000000000000000000000000000000000000000007399 169.0
LYD3_k127_3391200_3 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000000000000006775 166.0
LYD3_k127_3391200_4 seryl-tRNA synthetase K01875 - 6.1.1.11 0.00000000000000000000000000000008357 127.0
LYD3_k127_3391353_0 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 603.0
LYD3_k127_3391353_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000001362 89.0
LYD3_k127_3391353_2 - - - - 0.000000000002846 72.0
LYD3_k127_3391353_4 Heat shock protein - - - 0.0000000002904 67.0
LYD3_k127_3393927_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008454 550.0
LYD3_k127_3393927_1 PFAM Starch synthase, catalytic domain K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 472.0
LYD3_k127_3393927_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 310.0
LYD3_k127_3393927_3 Domain of unknown function (DUF4270) - - - 0.0000000000000000000000000000000000000000000000000000000000000001803 239.0
LYD3_k127_3393927_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000009362 55.0
LYD3_k127_3400700_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 2.76e-198 621.0
LYD3_k127_3400700_1 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 469.0
LYD3_k127_3400700_10 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000000000005605 154.0
LYD3_k127_3400700_11 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000008756 78.0
LYD3_k127_3400700_2 Metal-dependent hydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 431.0
LYD3_k127_3400700_3 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 365.0
LYD3_k127_3400700_4 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007084 289.0
LYD3_k127_3400700_5 PFAM Uncharacterised protein family UPF0029, Impact, N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 284.0
LYD3_k127_3400700_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001752 271.0
LYD3_k127_3400700_7 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000001003 252.0
LYD3_k127_3400700_8 Putative FMN-binding domain K07734 - - 0.0000000000000000000000000000000000000000000000000000000000000048 222.0
LYD3_k127_3400700_9 Alpha beta hydrolase fold K01066,K14731 - 3.1.1.83 0.0000000000000000000000000000000000000000000000000000000000008326 222.0
LYD3_k127_3404409_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0 1175.0
LYD3_k127_3404409_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 4.83e-299 922.0
LYD3_k127_3404409_2 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 3.52e-199 627.0
LYD3_k127_3404409_3 Beta-lactamase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 431.0
LYD3_k127_3404409_4 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 388.0
LYD3_k127_3404409_5 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000527 247.0
LYD3_k127_3404409_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000000000000003099 169.0
LYD3_k127_3404409_7 Protein of unknown function (DUF1573) - - - 0.00000000000000000000000000000000000001122 150.0
LYD3_k127_3404409_8 Preprotein translocase subunit YajC K03210 - - 0.00000000000000000000000000000000000007642 145.0
LYD3_k127_3404409_9 Fibronectin type III domain protein - - - 0.0000000008054 63.0
LYD3_k127_3420053_0 PFAM Polysulphide reductase, NrfD K00185 - - 5.361e-274 846.0
LYD3_k127_3420053_1 Quinol cytochrome c oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 458.0
LYD3_k127_3420053_2 Quinol cytochrome c oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 314.0
LYD3_k127_3420053_3 cytochrome C - - - 0.00000000000000000000000000000000000000000000000004625 186.0
LYD3_k127_3420053_4 Oxidoreductase K00184 - - 0.00000000000000000000000000000000004008 136.0
LYD3_k127_3421957_0 glucose-1-phosphate adenylyltransferase K00975 - 2.7.7.27 4.5e-211 662.0
LYD3_k127_3421957_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 466.0
LYD3_k127_342238_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1388.0
LYD3_k127_3452199_0 Peptidase family M49 K01277 - 3.4.14.4 3.376e-311 966.0
LYD3_k127_3452199_1 Penicillin amidase K07116 - 3.5.1.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000058 344.0
LYD3_k127_3452199_2 WG containing repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004864 259.0
LYD3_k127_3452199_3 - - - - 0.0003197 48.0
LYD3_k127_3464865_0 TonB-dependent Receptor Plug K21573 - - 0.0 1054.0
LYD3_k127_3464865_1 RagB SusD domain protein K21572 - - 8.654e-213 673.0
LYD3_k127_3464865_2 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000008145 261.0
LYD3_k127_3464865_3 SusE outer membrane protein K21571 - - 0.00000000000000000000000000000000000000000000000000000000000000006618 235.0
LYD3_k127_3464865_4 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 0.00000000000000000000003259 101.0
LYD3_k127_3471193_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1441.0
LYD3_k127_3471193_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0 1115.0
LYD3_k127_3471193_10 amine dehydrogenase activity - - - 0.000000001506 70.0
LYD3_k127_3471193_12 Collagen triple helix repeat - - - 0.000000003503 69.0
LYD3_k127_3471193_13 helix_turn_helix, Lux Regulon K07696 - - 0.0003889 48.0
LYD3_k127_3471193_2 exo-alpha-(2->6)-sialidase activity - - - 1.037e-194 621.0
LYD3_k127_3471193_3 Peptidase, M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 565.0
LYD3_k127_3471193_4 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) K07094 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000637 407.0
LYD3_k127_3471193_5 Two component transcriptional regulator, LytTR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 402.0
LYD3_k127_3471193_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 363.0
LYD3_k127_3471193_7 C-terminal domain of CHU protein family K20276 - - 0.000000000000000000000000000000000000000000000003348 187.0
LYD3_k127_3471193_8 Tetratricopeptide repeat - - - 0.0000000000000429 86.0
LYD3_k127_3471193_9 - - - - 0.0000000000004633 82.0
LYD3_k127_3484177_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 537.0
LYD3_k127_3484177_1 Belongs to the arginase family K01476,K01480 - 3.5.3.1,3.5.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007787 531.0
LYD3_k127_3484177_2 dTDP-4-dehydrorhamnose reductase K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 328.0
LYD3_k127_3484177_3 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000001894 192.0
LYD3_k127_3484177_4 - - - - 0.00000001629 64.0
LYD3_k127_3492540_0 Carbohydrate family 9 binding domain-like - - - 5.955e-228 724.0
LYD3_k127_3492540_1 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001486 253.0
LYD3_k127_3495915_0 PFAM aldo keto reductase K19265 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000543 403.0
LYD3_k127_3495915_1 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005649 342.0
LYD3_k127_3512357_0 COGs COG0058 Glucan phosphorylase K00688,K00691 - 2.4.1.1,2.4.1.8 5.175e-311 957.0
LYD3_k127_3512357_1 H( )-stimulated, divalent metal cation uptake system K03322 - - 3.338e-259 812.0
LYD3_k127_3512357_2 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 548.0
LYD3_k127_3512357_3 Iron dependent repressor, metal binding and dimerisation domain K03709 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397 299.0
LYD3_k127_3512357_5 cyclic nucleotide binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000005422 240.0
LYD3_k127_3512357_6 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000001305 71.0
LYD3_k127_3515684_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 5.595e-233 723.0
LYD3_k127_3515684_1 Transporter K14445 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 534.0
LYD3_k127_3515684_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 488.0
LYD3_k127_3515684_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002264 467.0
LYD3_k127_3515684_4 Acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006757 374.0
LYD3_k127_3515684_5 Uroporphyrin-iii c tetrapyrrole (Corrin porphyrin) methyltransferase K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009541 301.0
LYD3_k127_3515684_6 Etoposide-induced protein 2.4 (EI24) K06203 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 287.0
LYD3_k127_3515684_7 Type IX secretion system membrane protein PorP/SprF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001716 279.0
LYD3_k127_3515684_8 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000001909 267.0
LYD3_k127_3515684_9 - - - - 0.00000000000001304 79.0
LYD3_k127_3536449_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 3.56e-239 745.0
LYD3_k127_3536449_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0000000000000000000000000000000001035 135.0
LYD3_k127_3543960_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 445.0
LYD3_k127_3543960_1 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 379.0
LYD3_k127_3543960_2 PFAM Glycoside hydrolase 97 K01187,K21574 - 3.2.1.20,3.2.1.3 0.000000000000000000000000001568 115.0
LYD3_k127_3543960_3 Domain of unknown function (DUF4286) - - - 0.000000000000000006742 84.0
LYD3_k127_3548263_0 Bacterial regulatory proteins, deoR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000191 281.0
LYD3_k127_3548263_1 COG1055 Na H antiporter NhaD and related arsenite - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007463 279.0
LYD3_k127_355136_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005588 585.0
LYD3_k127_355136_1 Oxidoreductase FAD-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 320.0
LYD3_k127_355136_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 325.0
LYD3_k127_355136_3 YtxH-like protein - - - 0.0004005 46.0
LYD3_k127_3552472_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0 1356.0
LYD3_k127_3552472_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 449.0
LYD3_k127_3553296_0 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000678 426.0
LYD3_k127_3553296_1 Helix-turn-helix XRE-family like proteins K07729 - - 0.000000000002633 70.0
LYD3_k127_3553296_2 COG1520 FOG WD40-like repeat - - - 0.00000000001919 75.0
LYD3_k127_3553296_3 SNARE associated Golgi protein K03975 - - 0.00000000002726 66.0
LYD3_k127_3553296_4 - - - - 0.00002373 52.0
LYD3_k127_3597828_0 Belongs to the UbiD family K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 578.0
LYD3_k127_3597828_1 ATP-grasp in the biosynthetic pathway with Ter operon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 299.0
LYD3_k127_3605230_0 Motility related/secretion protein - - - 0.0 2759.0
LYD3_k127_3605230_1 PKD domain containing protein - - - 6.948e-228 734.0
LYD3_k127_3605230_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 568.0
LYD3_k127_3605230_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 336.0
LYD3_k127_3605230_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000006477 245.0
LYD3_k127_3605230_6 metallopeptidase activity - - - 0.0000000000000000001785 97.0
LYD3_k127_3605230_7 PFAM alpha beta hydrolase fold - - - 0.00000000002853 66.0
LYD3_k127_3605230_8 Galactose oxidase, central domain - - - 0.00000002161 66.0
LYD3_k127_3610495_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004464 588.0
LYD3_k127_3610495_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007913 290.0
LYD3_k127_36220_0 Participates in initiation and elongation during chromosome replication - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006142 403.0
LYD3_k127_36220_1 - - - - 0.000000000000000000000000000000000001949 150.0
LYD3_k127_36220_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.000000000000000000000000001096 128.0
LYD3_k127_36220_3 Belongs to the peptidase S8 family - - - 0.00000000000000000000006049 107.0
LYD3_k127_36220_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000002151 64.0
LYD3_k127_3633420_0 Protein of unknown function (DUF1800) - - - 3.148e-198 632.0
LYD3_k127_3633420_1 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000008797 203.0
LYD3_k127_3633420_2 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 0.00000000001377 64.0
LYD3_k127_3654975_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 9.884e-305 944.0
LYD3_k127_3654975_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005962 379.0
LYD3_k127_3654975_2 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000002712 243.0
LYD3_k127_3654975_3 fibronectin type III domain protein K21571 - - 0.0000000000000000000000000000004865 125.0
LYD3_k127_3654975_4 Hep Hag repeat protein - - - 0.000000000000000000000001003 104.0
LYD3_k127_3656085_0 Oxidoreductase K00184 - - 0.0 1399.0
LYD3_k127_3656085_1 PFAM Cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005953 426.0
LYD3_k127_3659140_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 295.0
LYD3_k127_3659140_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000001619 186.0
LYD3_k127_3659140_2 - K09004 - - 0.000000000000000000000000003475 116.0
LYD3_k127_3661393_0 COGs COG0767 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 393.0
LYD3_k127_3661393_1 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 376.0
LYD3_k127_3661393_2 belongs to the carbohydrate kinase PfkB family K00917,K16370 - 2.7.1.11,2.7.1.144 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 351.0
LYD3_k127_3661393_3 COGs COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.000000000000000000000000000000000002187 139.0
LYD3_k127_3663199_0 Outer membrane protein beta-barrel family - - - 3.223e-271 857.0
LYD3_k127_3663199_1 Mur ligase family, catalytic domain - - - 1.996e-204 645.0
LYD3_k127_3663199_10 DoxX family - - - 0.0000000000000000000000000000000000000006547 153.0
LYD3_k127_3663199_11 membrane transporter protein K07090 - - 0.00000000000000000000000000000002614 130.0
LYD3_k127_3663199_12 Uncharacterized ACR, COG1993 K09137 - - 0.0000000000000000000000006699 106.0
LYD3_k127_3663199_14 - - - - 0.000000007245 63.0
LYD3_k127_3663199_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 437.0
LYD3_k127_3663199_3 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006491 284.0
LYD3_k127_3663199_4 PFAM NlpC P60 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006267 268.0
LYD3_k127_3663199_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001005 256.0
LYD3_k127_3663199_6 Domain of unknown function (DUF1905) - - - 0.00000000000000000000000000000000000000000000000000000000001674 210.0
LYD3_k127_3663199_7 deaminase K01487 - 3.5.4.3 0.00000000000000000000000000000000000000000000000000000000003615 209.0
LYD3_k127_3663199_8 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000001103 197.0
LYD3_k127_3663199_9 PFAM Low affinity iron permease - - - 0.0000000000000000000000000000000000000000000000000008187 188.0
LYD3_k127_36729_0 Involved in the tonB-independent uptake of proteins - - - 2.881e-262 837.0
LYD3_k127_3673540_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004419 423.0
LYD3_k127_3673540_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000005406 214.0
LYD3_k127_368741_0 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 535.0
LYD3_k127_368741_1 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 422.0
LYD3_k127_368741_2 - - - - 0.0000000000000000000000000000000000000007227 152.0
LYD3_k127_368741_3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.0000000000000000000000000000000009691 130.0
LYD3_k127_368741_4 - - - - 0.0000000000000000000007972 98.0
LYD3_k127_3705198_0 Amino acid permease K03294 - - 3.33e-218 684.0
LYD3_k127_3705198_1 ligase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 408.0
LYD3_k127_3705198_2 PFAM LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001009 275.0
LYD3_k127_3705198_3 Alpha/beta hydrolase of unknown function (DUF1057) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001906 254.0
LYD3_k127_3705198_4 DinB family - - - 0.000000000000000000000000000000000000000000000000005542 187.0
LYD3_k127_3705198_5 PFAM LysE type translocator - - - 0.000000000000000000000000000000000000000000002327 171.0
LYD3_k127_3705198_6 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000003119 158.0
LYD3_k127_3705198_7 - catabolite gene activator and regulatory subunit of cAMP-dependent protein K01420 - - 0.000000000000000005563 83.0
LYD3_k127_3708304_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 530.0
LYD3_k127_3708304_1 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 447.0
LYD3_k127_3708304_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 436.0
LYD3_k127_3708304_3 acr, cog1678 K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 291.0
LYD3_k127_3708304_4 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004364 254.0
LYD3_k127_3708304_5 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000005523 225.0
LYD3_k127_3708304_6 ATP synthase K02114 - - 0.00000000000000000000000000000000332 130.0
LYD3_k127_3708304_7 - - - - 0.00000000000000000000000000000001643 129.0
LYD3_k127_3718200_0 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000996 248.0
LYD3_k127_3718200_1 BlaR1 peptidase M56 - - - 0.000000000000000000000000000000000000000000000000000000000000001105 239.0
LYD3_k127_3718200_2 Transcriptional repressor, CopY family - - - 0.000000000000000000000000000000000000000000000000000029 190.0
LYD3_k127_3725494_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004524 469.0
LYD3_k127_3735451_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 3.059e-283 887.0
LYD3_k127_3735451_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000002493 166.0
LYD3_k127_3735451_2 Belongs to the UPF0754 family - - - 0.000000000000000000000000000000000005087 140.0
LYD3_k127_3752188_0 Pfam SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006878 533.0
LYD3_k127_3752188_1 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003844 465.0
LYD3_k127_3752188_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001286 242.0
LYD3_k127_3752188_3 Crp-like helix-turn-helix domain K10914 - - 0.00000000000000000000000000000000000000000000369 172.0
LYD3_k127_3771725_0 COG1228 Imidazolonepropionase and related K01468 - 3.5.2.7 2.816e-204 641.0
LYD3_k127_3771725_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 474.0
LYD3_k127_3771725_2 bifunctional deaminase-reductase domain protein K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000008389 229.0
LYD3_k127_3771725_3 - - - - 0.0007426 51.0
LYD3_k127_3801314_0 Oxidoreductase FAD-binding domain K02613 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 454.0
LYD3_k127_3801314_1 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 440.0
LYD3_k127_3801314_2 Transcriptional regulator, TetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000001057 231.0
LYD3_k127_3801314_3 PFAM pfkB family carbohydrate kinase - - - 0.0000000000003424 70.0
LYD3_k127_3801314_4 - - - - 0.00009075 51.0
LYD3_k127_381889_0 Caspase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 327.0
LYD3_k127_381889_1 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c - - - 0.000000000002872 78.0
LYD3_k127_3857538_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000001573 252.0
LYD3_k127_3857538_1 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008495 250.0
LYD3_k127_3857538_2 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000000000000000002597 215.0
LYD3_k127_3857538_3 TIGRFAM Gliding motility-associated ABC transporter permease protein GldF K01992 - - 0.0000000000000000006906 89.0
LYD3_k127_3861822_0 von Willebrand factor, type A K07114 - - 6.56e-244 762.0
LYD3_k127_3861822_1 Saccharopine dehydrogenase K00290,K00293 - 1.5.1.10,1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 572.0
LYD3_k127_3861822_2 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 359.0
LYD3_k127_3886117_0 Involved in the tonB-independent uptake of proteins - - - 7.124e-198 651.0
LYD3_k127_388617_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1317.0
LYD3_k127_388617_1 translation release factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 421.0
LYD3_k127_388617_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 389.0
LYD3_k127_388617_3 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003223 392.0
LYD3_k127_388617_4 - - - - 0.00000000000000000000000000000000000000000000000000000008794 198.0
LYD3_k127_389183_0 - - - - 0.00000000000000006401 85.0
LYD3_k127_389183_1 Pkd domain containing protein - - - 0.000000000001457 78.0
LYD3_k127_389183_2 Belongs to the ompA family - - - 0.0000000000378 73.0
LYD3_k127_3903229_0 PFAM peptidase T2 asparaginase 2 K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 486.0
LYD3_k127_3903229_1 NADPH-dependent FMN reductase - - - 0.00000000000000003522 83.0
LYD3_k127_3903229_2 Participates in the control of copper homeostasis K06201 - - 0.0000000002117 61.0
LYD3_k127_3908189_0 Beta-lactamase class C and other penicillin binding - - - 1.476e-204 648.0
LYD3_k127_3908189_1 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000002723 100.0
LYD3_k127_3908189_2 PFAM Di-glucose binding within endoplasmic reticulum - - - 0.0000000000000004855 89.0
LYD3_k127_3908189_3 Metallo-peptidase family M12B Reprolysin-like - - - 0.0001224 53.0
LYD3_k127_3910193_0 Fibronectin type III domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 471.0
LYD3_k127_3911029_0 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 557.0
LYD3_k127_3911029_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 531.0
LYD3_k127_3911029_2 Domain of unknown function (DUF4249) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 351.0
LYD3_k127_3911029_3 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K00796,K00950,K01633,K13940 - 1.13.11.81,2.5.1.15,2.7.6.3,4.1.2.25,5.1.99.8 0.00000000000000000000000000000000000299 142.0
LYD3_k127_3911029_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.000000000000000000000000000001951 122.0
LYD3_k127_3911029_5 OsmC-like protein - - - 0.00000000001826 65.0
LYD3_k127_3924353_0 Penicillin amidase - - - 0.0 1089.0
LYD3_k127_3924353_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 295.0
LYD3_k127_3924353_2 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000001 195.0
LYD3_k127_3924353_3 Protein of unknown function (DUF418) K07148 - - 0.0000000000000000000000000000000000004257 150.0
LYD3_k127_3924353_5 - - - - 0.000000000000000000000000000001943 130.0
LYD3_k127_39313_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 412.0
LYD3_k127_39313_1 Transcriptional regulatory protein, C terminal - - - 0.0000000000004978 69.0
LYD3_k127_3935352_0 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004376 469.0
LYD3_k127_3935352_1 COGs COG3653 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 319.0
LYD3_k127_3935352_2 Gnat family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003914 236.0
LYD3_k127_3941039_0 ubiE/COQ5 methyltransferase family K15256 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003051 310.0
LYD3_k127_3941039_1 PFAM Major Facilitator Superfamily K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006684 276.0
LYD3_k127_3941039_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000002159 213.0
LYD3_k127_3941039_3 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000001803 188.0
LYD3_k127_3941039_4 ArsC family K00537 - 1.20.4.1 0.0000000000000000000000000151 111.0
LYD3_k127_3941039_5 ArsC family K00537 - 1.20.4.1 0.0000000000008812 69.0
LYD3_k127_3942_0 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005993 385.0
LYD3_k127_3942_1 - - - - 0.000000000000000000000000000000000000000000000007419 181.0
LYD3_k127_3942_2 Cupin domain - - - 0.000703 42.0
LYD3_k127_394373_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 466.0
LYD3_k127_394373_1 Peptidase, M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003183 332.0
LYD3_k127_3948793_0 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007641 425.0
LYD3_k127_3948793_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000002587 184.0
LYD3_k127_3948793_2 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000001683 139.0
LYD3_k127_3954660_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 490.0
LYD3_k127_3954660_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006312 332.0
LYD3_k127_3954660_2 photosystem II stabilization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005897 281.0
LYD3_k127_3954660_3 Psort location OuterMembrane, score - - - 0.00000000000000000000000000005805 121.0
LYD3_k127_3954660_4 Belongs to the ompA family - - - 0.00000000000000000002657 95.0
LYD3_k127_3957244_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 1.015e-249 776.0
LYD3_k127_3957244_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 601.0
LYD3_k127_3957244_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 403.0
LYD3_k127_3957244_3 Cell division protein K03589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001423 275.0
LYD3_k127_396219_0 COG2366 Protein related to penicillin acylase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 389.0
LYD3_k127_396219_1 - - - - 0.000000000000000000000000000000698 124.0
LYD3_k127_396219_2 Carboxypeptidase regulatory-like domain - - - 0.0003561 48.0
LYD3_k127_39838_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 1.684e-197 621.0
LYD3_k127_39838_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005253 244.0
LYD3_k127_3984_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007155 385.0
LYD3_k127_3984_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 375.0
LYD3_k127_3984_2 GldH lipoprotein - GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0017144,GO:0040011,GO:0042737,GO:0043170,GO:0044237,GO:0044248,GO:0046348,GO:0048870,GO:0051179,GO:0051674,GO:0071704,GO:0071976,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000341 94.0
LYD3_k127_398886_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005991 577.0
LYD3_k127_398886_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 368.0
LYD3_k127_398886_10 23S rRNA-intervening sequence protein - - - 0.00000000000000000000009645 101.0
LYD3_k127_398886_11 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000001628 93.0
LYD3_k127_398886_2 Phenylacetic acid catabolic protein K02611 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007723 346.0
LYD3_k127_398886_3 Hexapeptide repeat of succinyl-transferase K02617,K08279 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 313.0
LYD3_k127_398886_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006906 290.0
LYD3_k127_398886_5 Pfam:DUF59 K02612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000136 248.0
LYD3_k127_398886_6 Phenylacetic acid degradation B K02610 - - 0.000000000000000000000000000000000000000000000000000000003936 200.0
LYD3_k127_398886_7 phenylacetic acid degradation protein K02614 - - 0.0000000000000000000000000000000000000000000000000004587 188.0
LYD3_k127_398886_8 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.00000000000000000000000000000000000000000000001157 172.0
LYD3_k127_398886_9 - - - - 0.0000000000000000000000000000000009149 133.0
LYD3_k127_401396_0 Putative porin - - - 2.4e-245 775.0
LYD3_k127_401396_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 500.0
LYD3_k127_401396_10 - - - - 0.00000001654 61.0
LYD3_k127_401396_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 409.0
LYD3_k127_401396_3 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 382.0
LYD3_k127_401396_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 339.0
LYD3_k127_401396_5 Protein of unknown function (DUF3347) - - - 0.00000000000000000000000000000000000000000000000000000000000007675 219.0
LYD3_k127_401396_6 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000008097 174.0
LYD3_k127_401396_7 Heavy-metal-associated domain K08364 - - 0.00000000000000000000000000000004708 129.0
LYD3_k127_401396_8 - - - - 0.00000000000000000000001881 104.0
LYD3_k127_401396_9 Heavy-metal-associated domain K08364 - - 0.00000000000000000000002165 107.0
LYD3_k127_4017221_0 Glucosamine-6-phosphate K02564 - 3.5.99.6 5e-324 1000.0
LYD3_k127_4017221_1 Glycosyl hydrolase family 20, domain 2 K12373 - 3.2.1.52 1.69e-253 804.0
LYD3_k127_4017221_2 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 310.0
LYD3_k127_4018851_0 Aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 443.0
LYD3_k127_4018851_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 467.0
LYD3_k127_4018851_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 364.0
LYD3_k127_4018851_3 Collagen triple helix repeat (20 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 315.0
LYD3_k127_4018851_4 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000001292 266.0
LYD3_k127_4018851_5 COGs COG2185 Methylmalonyl-CoA mutase C-terminal domain subunit (cobalamin-binding) K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000002392 239.0
LYD3_k127_4018851_6 Two component transcriptional regulator, LytTR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000005041 224.0
LYD3_k127_4018851_7 NlpC/P60 family - - - 0.000000000000000000000003115 104.0
LYD3_k127_4018851_8 Hep Hag repeat protein - - - 0.000000000005934 79.0
LYD3_k127_4018851_9 - - - - 0.0000004364 58.0
LYD3_k127_405101_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008283 585.0
LYD3_k127_405101_1 outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 294.0
LYD3_k127_405101_2 Amino acid permease K03294 - - 0.0000000000001756 72.0
LYD3_k127_4070741_0 Sortilin, neurotensin receptor 3, - - - 0.0 1513.0
LYD3_k127_4070741_1 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004376 431.0
LYD3_k127_4070741_2 fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000002747 198.0
LYD3_k127_4074388_0 Belongs to the helicase family. UvrD subfamily K03657 - 3.6.4.12 1.134e-262 818.0
LYD3_k127_4074388_1 Bacterial Ig-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008976 496.0
LYD3_k127_4074388_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003702 263.0
LYD3_k127_4084873_0 Oligoendopeptidase F K08602 - - 8.138e-278 865.0
LYD3_k127_4084873_1 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 302.0
LYD3_k127_4084873_2 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000138 268.0
LYD3_k127_4084873_3 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000001521 209.0
LYD3_k127_4084873_4 - - - - 0.000000000000000000000000000000000000000000000000000000002372 206.0
LYD3_k127_4084873_6 Glyoxalase-like domain K06996 - - 0.000000000005273 68.0
LYD3_k127_4085492_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 400.0
LYD3_k127_4085492_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000009605 193.0
LYD3_k127_4099052_0 acyl-CoA dehydrogenase - - - 5.335e-215 672.0
LYD3_k127_4099052_1 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002328 276.0
LYD3_k127_4099052_2 PFAM Cytochrome c assembly protein K02198 - - 0.000000000000000000000000000000000000000000000000000000000000001238 221.0
LYD3_k127_4099052_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000287 132.0
LYD3_k127_4106650_0 - - - - 0.000008073 58.0
LYD3_k127_4116018_0 Psort location OuterMembrane, score - - - 5.267e-228 724.0
LYD3_k127_4116018_1 Carboxypeptidase regulatory-like domain - - - 6.777e-208 677.0
LYD3_k127_4116018_2 photosystem II stabilization - - - 0.00000000000000000000000000000000006364 137.0
LYD3_k127_4141426_0 CHASE2 domain - - - 0.00000000000000000000000000000000000001764 159.0
LYD3_k127_4141426_1 - - - - 0.00000000000000000000000006597 121.0
LYD3_k127_4141426_2 Caspase domain - - - 0.0000000000000000079 87.0
LYD3_k127_4141426_3 Caspase domain - - - 0.0000439 46.0
LYD3_k127_41526_0 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 290.0
LYD3_k127_41526_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000004723 237.0
LYD3_k127_4158439_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000549 512.0
LYD3_k127_4158439_1 AhpC/TSA family - - - 0.0000000000000000000000000000000008978 136.0
LYD3_k127_4158439_2 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000003096 131.0
LYD3_k127_4172198_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 473.0
LYD3_k127_4172198_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000001104 109.0
LYD3_k127_4172198_2 Telomere recombination K07566 - 2.7.7.87 0.00000000000000000000009891 98.0
LYD3_k127_418002_0 TonB-linked outer membrane protein, SusC RagA family - - - 8.474e-274 872.0
LYD3_k127_418002_1 PFAM RagB SusD domain protein K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 498.0
LYD3_k127_41813_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 488.0
LYD3_k127_41813_1 nitrite reductase [NAD(P)H] activity K00158,K03809 - 1.2.3.3,1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 450.0
LYD3_k127_41813_2 Domain of unknown function (DUF4395) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 308.0
LYD3_k127_41813_3 light absorption K07255,K21700 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007377 268.0
LYD3_k127_41813_4 Belongs to the MtfA family K09933 - - 0.0000000000000000000000000000000000000000000000000000000000000000007422 236.0
LYD3_k127_41813_5 PFAM Hemolysin-type calcium-binding K01406 - 3.4.24.40 0.00000000000000000000000000000000000000000000000000000000000003222 231.0
LYD3_k127_41813_6 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000001435 219.0
LYD3_k127_41813_7 Stage II sporulation protein E (SpoIIE) - - - 0.00000000000000000000001998 102.0
LYD3_k127_41813_8 - - - - 0.00000000000000000002071 104.0
LYD3_k127_41813_9 phosphoserine phosphatase activity - - - 0.00000000000000001311 83.0
LYD3_k127_4185106_0 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 604.0
LYD3_k127_4185106_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 582.0
LYD3_k127_4205692_0 PFAM sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 506.0
LYD3_k127_4205692_1 Uncharacterized protein conserved in bacteria (DUF2135) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 315.0
LYD3_k127_4222628_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007405 450.0
LYD3_k127_4222628_1 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 407.0
LYD3_k127_4222628_2 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005493 267.0
LYD3_k127_4222628_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.000000000000000000000000000000000000000927 149.0
LYD3_k127_4240981_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 364.0
LYD3_k127_4240981_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 363.0
LYD3_k127_4240981_2 Tetratricopeptide repeat - - - 0.00000000000000000000004002 108.0
LYD3_k127_4240981_3 Collagen triple helix repeat - - - 0.0000000004601 74.0
LYD3_k127_4240981_4 - - - - 0.0000001984 65.0
LYD3_k127_4248416_0 Peptidase family M1 domain - - - 6.754e-293 908.0
LYD3_k127_4248416_1 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 8.441e-273 847.0
LYD3_k127_4248416_10 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 289.0
LYD3_k127_4248416_11 secreted Zn-dependent protease - - - 0.00000000000000000000000000000000000007592 148.0
LYD3_k127_4248416_12 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000003283 135.0
LYD3_k127_4248416_13 deoxynucleoside kinase - - - 0.00000000000000000001483 91.0
LYD3_k127_4248416_2 Belongs to the peptidase M24B family K01262 - 3.4.11.9 1.975e-240 747.0
LYD3_k127_4248416_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 8.043e-206 645.0
LYD3_k127_4248416_4 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 523.0
LYD3_k127_4248416_5 Permease, YjgP YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007401 482.0
LYD3_k127_4248416_6 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 463.0
LYD3_k127_4248416_7 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 358.0
LYD3_k127_4248416_8 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 301.0
LYD3_k127_4248416_9 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 290.0
LYD3_k127_4253613_0 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 359.0
LYD3_k127_4253613_1 RF-1 domain K15034 - - 0.0000000000000000000000000000000000004049 143.0
LYD3_k127_4253613_3 Polysaccharide biosynthesis protein - - - 0.00006949 48.0
LYD3_k127_4263168_0 peptidase M42 - - - 6.762e-197 618.0
LYD3_k127_4263168_1 Acyl-protein synthetase, LuxE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 416.0
LYD3_k127_4263168_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000169 271.0
LYD3_k127_4272080_0 Peptidase M50 - - - 0.000000000000000000000000000000000000000000000000001053 196.0
LYD3_k127_4272080_1 Thioesterase-like superfamily K07107 - - 0.000000003939 58.0
LYD3_k127_4273607_0 COGs COG1975 Xanthine and CO dehydrogenase maturation factor XdhC CoxF family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 364.0
LYD3_k127_4273607_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000894 266.0
LYD3_k127_427883_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1092.0
LYD3_k127_428735_0 PFAM Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 381.0
LYD3_k127_428735_1 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009798 327.0
LYD3_k127_428735_2 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003 249.0
LYD3_k127_428735_3 - - - - 0.00000000000000000000000000001734 118.0
LYD3_k127_4287818_0 ABC transporter K06147,K11085 - - 3.238e-268 837.0
LYD3_k127_4287818_1 acyl-CoA dehydrogenase - - - 5.094e-205 643.0
LYD3_k127_4287818_2 of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 394.0
LYD3_k127_4287818_3 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 306.0
LYD3_k127_4287818_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000000000000000000002995 192.0
LYD3_k127_4287818_5 Methyltransferase domain - - - 0.00000000000000000000000000001873 119.0
LYD3_k127_4289902_0 Sigma-54 interaction domain K03405 - 6.6.1.1 9.771e-260 807.0
LYD3_k127_4289902_1 - - - - 0.0000000000000000000007121 98.0
LYD3_k127_4292470_0 DEAD-like helicases superfamily - - - 0.0 1320.0
LYD3_k127_4292470_1 Outer membrane protein protective antigen OMA87 - - - 5.047e-224 719.0
LYD3_k127_4292470_2 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 608.0
LYD3_k127_4292470_3 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008483 526.0
LYD3_k127_4292470_4 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005888 395.0
LYD3_k127_4292470_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 333.0
LYD3_k127_4292470_6 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.000000000000000000000000000000000000000000000000000000000000000000001176 244.0
LYD3_k127_4292470_7 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000000002822 169.0
LYD3_k127_4292470_8 Domain of unknown function (DUF5103) - - - 0.000000000000000000000000001974 119.0
LYD3_k127_4295199_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005545 457.0
LYD3_k127_4295199_1 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 334.0
LYD3_k127_4295199_2 PFAM Glyoxalase Bleomycin resistance protein Dioxygenase superfamily K07104 - 1.13.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001577 264.0
LYD3_k127_4295199_3 COG0720 6-pyruvoyl-tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000001279 190.0
LYD3_k127_4295199_4 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.0000000000000000000000000000000000000000000004251 168.0
LYD3_k127_4296230_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 593.0
LYD3_k127_4296230_1 Diacylglycerol kinase - - - 0.000000000000000000000000000000000000000000000000000000000000003797 222.0
LYD3_k127_4314519_0 PFAM Pregnancy-associated plasma protein-A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 296.0
LYD3_k127_4314519_1 Transposase - - - 0.000000000000000000000000000002036 132.0
LYD3_k127_4314519_2 Ppx GppA phosphatase - - - 0.000003014 53.0
LYD3_k127_4322125_0 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001014 254.0
LYD3_k127_4322125_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000125 185.0
LYD3_k127_4322125_2 Pkd domain containing protein - - - 0.0000000000000005712 83.0
LYD3_k127_4322125_3 COG1520 FOG WD40-like repeat - - - 0.0000006639 59.0
LYD3_k127_433291_0 penicillin-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003878 430.0
LYD3_k127_433291_1 PFAM N-acetylglucosaminyl phosphatidylinositol deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000007772 233.0
LYD3_k127_433291_2 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000001311 212.0
LYD3_k127_433291_3 Psort location CytoplasmicMembrane, score K09153 - - 0.0000000001566 66.0
LYD3_k127_4346483_0 Permease, YjgP YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 515.0
LYD3_k127_4346483_1 - - - - 0.000000000000000000000000000000000000000000085 166.0
LYD3_k127_4346483_2 PFAM FecR protein K01179,K03933 - 3.2.1.4 0.000000000000000007878 98.0
LYD3_k127_4352001_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 5.922e-232 722.0
LYD3_k127_4352001_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 528.0
LYD3_k127_4352001_2 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 355.0
LYD3_k127_4352001_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000006841 224.0
LYD3_k127_4352001_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000659 224.0
LYD3_k127_4352001_5 YcxB-like protein - - - 0.00000000000000000000000000000000000000000000000000000002982 200.0
LYD3_k127_4352001_6 PhoD-like phosphatase K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000009239 175.0
LYD3_k127_4352001_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000000001305 142.0
LYD3_k127_4352001_8 - - - - 0.00000007819 61.0
LYD3_k127_4352001_9 - - - - 0.000001603 57.0
LYD3_k127_4353449_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 538.0
LYD3_k127_4353449_1 Domain of unknown function (DU1801) - - - 0.000000000000003141 78.0
LYD3_k127_438277_0 Uncharacterised protein family (UPF0182) K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0 1450.0
LYD3_k127_438277_1 PFAM X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 2.981e-258 802.0
LYD3_k127_438277_2 UPF0182 protein K09118 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.00003865 49.0
LYD3_k127_4392302_0 Belongs to the glycosyl hydrolase 43 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 595.0
LYD3_k127_4392302_1 DoxX - - - 0.0000000000000000000000000000000000000000000003014 170.0
LYD3_k127_4396171_0 Aminotransferase class-III K07250 - 2.6.1.19,2.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 571.0
LYD3_k127_4396171_1 PFAM Aldehyde dehydrogenase K00128,K00135 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 450.0
LYD3_k127_4396171_2 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000001352 61.0
LYD3_k127_4419833_0 PFAM MazG nucleotide pyrophosphohydrolase K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 366.0
LYD3_k127_4419833_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001366 288.0
LYD3_k127_4419833_2 Protein of unknown function (DUF3667) - - - 0.00000000000000000000000000000239 125.0
LYD3_k127_4422662_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 470.0
LYD3_k127_4422662_1 Rhodanese Homology Domain K06917 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 399.0
LYD3_k127_4422662_2 Amidinotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000131 287.0
LYD3_k127_4422662_4 - - - - 0.0002837 50.0
LYD3_k127_4437784_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001362 263.0
LYD3_k127_4437784_1 PFAM Major Facilitator Superfamily K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003678 249.0
LYD3_k127_4437784_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000002267 136.0
LYD3_k127_4437784_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000003927 115.0
LYD3_k127_4449510_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 443.0
LYD3_k127_4449510_1 Protein of unknown function (DUF3810) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 372.0
LYD3_k127_4449510_10 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000000001943 178.0
LYD3_k127_4449510_11 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000868 159.0
LYD3_k127_4449510_12 PFAM Excinuclease ABC, C subunit K07461 - - 0.000000000000000000000000000000004639 130.0
LYD3_k127_4449510_13 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000002547 111.0
LYD3_k127_4449510_14 Endonuclease I - - - 0.000000000000000000000321 108.0
LYD3_k127_4449510_15 COGs COG1975 Xanthine and CO dehydrogenase maturation factor XdhC CoxF family K07402 - - 0.000000000000008676 75.0
LYD3_k127_4449510_2 Deoxycytidine triphosphate deaminase K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006654 344.0
LYD3_k127_4449510_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009491 310.0
LYD3_k127_4449510_4 acr, cog1399 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003965 266.0
LYD3_k127_4449510_5 Belongs to the P-Pant transferase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008242 246.0
LYD3_k127_4449510_6 IPT/TIG domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008461 237.0
LYD3_k127_4449510_7 IPT/TIG domain - - - 0.000000000000000000000000000000000000000000000000000000002215 213.0
LYD3_k127_4449510_8 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000003157 205.0
LYD3_k127_4449510_9 COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) K05770 - - 0.0000000000000000000000000000000000000000000000000000001317 198.0
LYD3_k127_4451764_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 391.0
LYD3_k127_4451764_1 Polyphosphate nucleotide phosphotransferase, PPK2 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 387.0
LYD3_k127_4451764_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000002331 216.0
LYD3_k127_4451764_3 TIGRFAM Peroxiredoxin, osmotically inducible protein C, subgroup K04063 - - 0.00000000000000000000000000000000000000000000000002436 182.0
LYD3_k127_4451764_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000005507 128.0
LYD3_k127_4451764_5 Outer membrane protein beta-barrel domain - - - 0.0000000000001503 79.0
LYD3_k127_4453046_0 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 454.0
LYD3_k127_4453046_1 usher protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001149 258.0
LYD3_k127_4453046_2 Modulates RecA activity K03565 - - 0.00000000000000000000000000000000000000000000000006862 183.0
LYD3_k127_4453046_3 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000002179 143.0
LYD3_k127_4453046_4 ATPase involved in DNA repair - - - 0.00000000000000003677 93.0
LYD3_k127_4453046_5 - - - - 0.0000177 56.0
LYD3_k127_4461588_0 PFAM PKD domain - - - 5.408e-269 862.0
LYD3_k127_4461588_1 protein CHP03519, membrane, Bacteroidetes - - - 0.000000000000000000000007601 102.0
LYD3_k127_4461692_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 544.0
LYD3_k127_4461692_1 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002676 534.0
LYD3_k127_4461692_2 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000001512 207.0
LYD3_k127_4461692_3 - - - - 0.000000001245 67.0
LYD3_k127_4463873_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006253 451.0
LYD3_k127_4463873_1 PFAM Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005883 443.0
LYD3_k127_4463873_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000102 274.0
LYD3_k127_4477774_0 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005786 424.0
LYD3_k127_4477774_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 316.0
LYD3_k127_4477774_2 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 GO:0003674,GO:0003824,GO:0004139,GO:0005975,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 4.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006328 316.0
LYD3_k127_4477774_3 PFAM Sporulation related domain - - - 0.00000000000000000000000000284 116.0
LYD3_k127_4481388_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007328 520.0
LYD3_k127_4481388_1 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004491 280.0
LYD3_k127_4481388_2 S1 P1 Nuclease - - - 0.000000000000000000000002427 103.0
LYD3_k127_4483524_0 chelatase, subunit chli K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004306 511.0
LYD3_k127_4483524_1 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 393.0
LYD3_k127_448548_0 PFAM Chalcone and stilbene synthases, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 476.0
LYD3_k127_448548_1 PFAM FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008265 423.0
LYD3_k127_448548_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 329.0
LYD3_k127_448548_3 PFAM UbiA prenyltransferase family K02548 - 2.5.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 303.0
LYD3_k127_448548_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009382 261.0
LYD3_k127_4498113_0 heat shock protein 70 K04043,K04044 - - 6.635e-292 906.0
LYD3_k127_4498113_1 Peptidase family C25 - - - 3.244e-259 820.0
LYD3_k127_4498113_3 Transglutaminase-like superfamily - - - 0.00000000000005462 83.0
LYD3_k127_4498113_4 PFAM Bacterial membrane protein YfhO - - - 0.0000001256 64.0
LYD3_k127_4515283_0 - - - - 0.000000000003836 68.0
LYD3_k127_4515283_2 - - - - 0.000002187 55.0
LYD3_k127_4531961_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.248e-289 897.0
LYD3_k127_4531961_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 1.319e-221 695.0
LYD3_k127_4531961_2 Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003539 354.0
LYD3_k127_4531961_3 YhhN family - - - 0.0000000000000000000000000000000000000000000001326 176.0
LYD3_k127_4537981_0 PFAM HhH-GPD superfamily base excision DNA repair protein K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000003496 255.0
LYD3_k127_4537981_1 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001798 252.0
LYD3_k127_4537981_2 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000001098 156.0
LYD3_k127_4543848_0 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 535.0
LYD3_k127_4543848_1 acyl-CoA reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008802 451.0
LYD3_k127_4543848_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 438.0
LYD3_k127_4543848_3 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000001273 219.0
LYD3_k127_4543848_4 PASTA domain containing protein K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.000000000000000000000000000003482 120.0
LYD3_k127_4543848_5 PASTA domain containing protein K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.00000000000659 67.0
LYD3_k127_4543848_6 Glycogen debranching enzyme, glucanotransferase domain - - - 0.00003934 46.0
LYD3_k127_4544311_0 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001954 274.0
LYD3_k127_4544311_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.00000000000000000000000007166 107.0
LYD3_k127_4544311_2 Protein of unknown function (DUF3098) - - - 0.000000000000000000002475 95.0
LYD3_k127_4548003_0 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008767 287.0
LYD3_k127_4548003_1 acid phosphatase activity K03651 - 3.1.4.53 0.0000000000000000000000000000000000000000000006023 175.0
LYD3_k127_4548003_2 Psort location CytoplasmicMembrane, score 9.82 - - - 0.00000000000000000002585 92.0
LYD3_k127_4559679_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1227.0
LYD3_k127_4559679_1 Oxidoreductase FAD-binding domain K00523,K05784 - 1.17.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 317.0
LYD3_k127_4559679_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.000000006787 58.0
LYD3_k127_4561653_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.0 1152.0
LYD3_k127_4561653_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 484.0
LYD3_k127_4563569_0 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000004618 221.0
LYD3_k127_4569257_0 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 571.0
LYD3_k127_4569257_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 561.0
LYD3_k127_4569257_2 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 512.0
LYD3_k127_4569257_3 AsmA-like C-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 347.0
LYD3_k127_4569257_4 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001356 279.0
LYD3_k127_4575238_0 CHAT domain - - - 8.298e-259 827.0
LYD3_k127_4575238_1 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 492.0
LYD3_k127_4575238_2 PFAM AhpC TSA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 347.0
LYD3_k127_4575238_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000001296 113.0
LYD3_k127_4575238_4 - - - - 0.00000000004885 70.0
LYD3_k127_4588848_0 Ion channel K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 382.0
LYD3_k127_4588848_1 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K03773 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000766 198.0
LYD3_k127_4588848_2 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000003641 179.0
LYD3_k127_4588848_3 - - - - 0.0000000000000000000000000000004021 139.0
LYD3_k127_4588848_4 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000005092 111.0
LYD3_k127_4588848_5 DNA polymerase III subunit epsilon K02342 - 2.7.7.7 0.00000000000000000001369 95.0
LYD3_k127_4593089_0 Beta-eliminating lyase - - - 2.746e-240 748.0
LYD3_k127_4593089_1 Tryptophanase K01667 - 4.1.99.1 2.865e-196 617.0
LYD3_k127_4608947_0 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001353 243.0
LYD3_k127_4608947_1 DNA polymerase K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000001007 220.0
LYD3_k127_4608947_2 Histidine triad domain protein K02503 - - 0.000000000000000000000000000000000000000000000000000009534 193.0
LYD3_k127_4619585_0 membrane protein (DUF2154) - - - 0.000000000000000000000000000000000000000000000000000000000001536 219.0
LYD3_k127_4619585_1 Domain of unknown function (DUF4288) - - - 0.00000000000000000000000000000000000000216 150.0
LYD3_k127_4619585_2 Histidine kinase - - - 0.0000000000000000001677 93.0
LYD3_k127_4619585_3 Tetratricopeptide repeat - - - 0.00000000005041 63.0
LYD3_k127_462092_0 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007773 553.0
LYD3_k127_462092_1 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006961 269.0
LYD3_k127_462092_2 peptidase activity - - - 0.0000000000000000000000000000000000336 136.0
LYD3_k127_462092_3 - - - - 0.00001629 48.0
LYD3_k127_4624745_0 Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 471.0
LYD3_k127_4624745_1 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 342.0
LYD3_k127_4624745_2 Glycosyl transferase, family 4 - - - 0.000000000000000000000000000000000000001377 150.0
LYD3_k127_4624745_3 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.00000000000827 66.0
LYD3_k127_4625168_0 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 8.253e-301 938.0
LYD3_k127_4625168_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 5.809e-224 700.0
LYD3_k127_4625168_2 - - - - 0.000000001974 59.0
LYD3_k127_4643396_0 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 4.464e-241 754.0
LYD3_k127_4643396_1 - - - - 0.000000001287 59.0
LYD3_k127_4644290_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 3.751e-233 724.0
LYD3_k127_4644290_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 539.0
LYD3_k127_4644290_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 388.0
LYD3_k127_4644290_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 344.0
LYD3_k127_4644290_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004868 285.0
LYD3_k127_4644290_5 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 286.0
LYD3_k127_4644290_6 Helix-hairpin-helix motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002737 278.0
LYD3_k127_4644290_7 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005961 269.0
LYD3_k127_4644290_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000000000002249 191.0
LYD3_k127_4644290_9 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000001257 87.0
LYD3_k127_4655454_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775,K01929 - 5.1.1.1,6.3.2.10 6.167e-296 929.0
LYD3_k127_4655454_1 Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 475.0
LYD3_k127_4655454_2 transport system involved in gliding motility, auxiliary component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 479.0
LYD3_k127_4655454_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 300.0
LYD3_k127_4655454_4 TIGRFAM Gliding motility-associated ABC transporter permease protein GldF K01992 - - 0.0000000000000000000000000000000000000000000000006233 177.0
LYD3_k127_465806_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 8.978e-219 687.0
LYD3_k127_465806_1 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104 - 3.1.3.48 0.0000000000000000000000000000000000000127 150.0
LYD3_k127_4667590_1 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004551 490.0
LYD3_k127_4667590_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007563 350.0
LYD3_k127_4698672_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 3.655e-231 718.0
LYD3_k127_4698672_1 Orotidine 5''-phosphate decarboxylase K01591 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 381.0
LYD3_k127_4698672_2 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000005375 209.0
LYD3_k127_4698672_3 small membrane protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000007448 117.0
LYD3_k127_4698672_4 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.00000386 51.0
LYD3_k127_47022_0 Erythromycin esterase K06880 - - 4.605e-260 804.0
LYD3_k127_47022_1 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005569 277.0
LYD3_k127_47022_2 Domain of unknown function (DUF892) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003171 256.0
LYD3_k127_47022_3 COGs COG3467 flavin-nucleotide-binding protein K07005 - - 0.0000000000000000000000000000000000000000000000000000000000000000003806 230.0
LYD3_k127_4709788_0 Outer membrane protein beta-barrel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 547.0
LYD3_k127_4709788_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 380.0
LYD3_k127_4709870_0 RNA polymerase, sigma-54 factor K03092 - - 2.266e-234 735.0
LYD3_k127_4709870_1 Belongs to the DegT DnrJ EryC1 family K19715 - 2.6.1.109 9.228e-206 645.0
LYD3_k127_4709870_2 PFAM Uncharacterised BCR, COG1649 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 592.0
LYD3_k127_4709870_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000005278 187.0
LYD3_k127_4709870_4 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000004538 161.0
LYD3_k127_4709870_5 Ketosteroid isomerase-related protein - - - 0.000000000000000000000001268 106.0
LYD3_k127_4709870_6 Outer membrane protein beta-barrel domain - - - 0.000000005593 66.0
LYD3_k127_471199_0 PFAM Cytochrome C oxidase subunit II, periplasmic domain K00376 - 1.7.2.4 0.0 1163.0
LYD3_k127_471199_1 PFAM Periplasmic copper-binding protein (NosD) K07218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 570.0
LYD3_k127_471199_2 lipoprotein involved in nitrous oxide reduction K19342 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 445.0
LYD3_k127_471199_3 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000004858 230.0
LYD3_k127_471199_4 ABC-type multidrug transport system ATPase component K19340 - - 0.00000000000000000000000000000000000000000000000000004605 190.0
LYD3_k127_471199_5 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.000000000000000000000000000000000000000000000000005905 186.0
LYD3_k127_4720226_0 ABC transporter K15738 - - 1.42e-300 932.0
LYD3_k127_4720226_1 PFAM Major Facilitator Superfamily - - - 9.417e-194 611.0
LYD3_k127_4720226_10 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000002662 139.0
LYD3_k127_4720226_2 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 542.0
LYD3_k127_4720226_3 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002919 515.0
LYD3_k127_4720226_4 Glycosyl transferase, family 9 K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 472.0
LYD3_k127_4720226_5 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 419.0
LYD3_k127_4720226_6 SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 380.0
LYD3_k127_4720226_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001931 264.0
LYD3_k127_4720226_8 Protein of unknown function, DUF481 - - - 0.00000000000000000000000000000000000000000000000000000000000000002464 232.0
LYD3_k127_4720226_9 Ketosteroid isomerase-related protein - - - 0.00000000000000000000000000000000000000000000000000000002486 203.0
LYD3_k127_4723812_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.014e-272 845.0
LYD3_k127_4723812_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 354.0
LYD3_k127_4738099_0 phosphoesterase RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 414.0
LYD3_k127_4738099_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 287.0
LYD3_k127_4738099_2 PFAM FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03767 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000008135 195.0
LYD3_k127_4744054_0 TIGRFAM YihY family protein (not ribonuclease BN) K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005387 410.0
LYD3_k127_4744054_1 Peptidase, M48 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 360.0
LYD3_k127_4744054_3 - - - - 0.000000000000001371 77.0
LYD3_k127_4744054_4 CsbD-like - - - 0.0000000000009318 70.0
LYD3_k127_4748146_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 2.466e-315 976.0
LYD3_k127_4748146_1 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009612 459.0
LYD3_k127_4748146_2 MatE - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 314.0
LYD3_k127_4748146_3 RNA methyltransferase, RsmD K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007254 275.0
LYD3_k127_4774260_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 456.0
LYD3_k127_4774260_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000004018 260.0
LYD3_k127_4774260_2 Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000003257 210.0
LYD3_k127_478544_0 Protein of unknown function (DUF3667) - - - 0.000000000000000000000000000000000000000000000000000000000000001016 227.0
LYD3_k127_478544_1 6-O-methylguanine DNA methyltransferase, DNA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000008401 203.0
LYD3_k127_478544_2 self proteolysis - - - 0.0000000000000000000000000000000000000000000006276 178.0
LYD3_k127_478837_0 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000874 265.0
LYD3_k127_478837_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000002309 217.0
LYD3_k127_478837_2 protein conserved in bacteria - - - 0.00000000000000000000000000007331 121.0
LYD3_k127_4789212_0 ABC-type Na efflux pump, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 493.0
LYD3_k127_4789212_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007627 458.0
LYD3_k127_4789212_2 FAD-dependent dehydrogenase K07137 - - 0.00000000000000000000000000000000000000000000000000003149 189.0
LYD3_k127_4789231_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 589.0
LYD3_k127_4789231_1 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 401.0
LYD3_k127_4789231_2 Peptidase family S41 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002814 253.0
LYD3_k127_4791392_0 Heat shock 70 kDa protein K04043 - - 0.0 1104.0
LYD3_k127_4791392_1 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 9.094e-276 859.0
LYD3_k127_4791392_10 - - - - 0.0000000000000000000000015 106.0
LYD3_k127_4791392_11 peptidyl-tyrosine sulfation - - - 0.0001951 44.0
LYD3_k127_4791392_2 Domain of unknown function (DUF4403) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 527.0
LYD3_k127_4791392_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004097 253.0
LYD3_k127_4791392_4 GtrA-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001372 225.0
LYD3_k127_4791392_5 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000002837 207.0
LYD3_k127_4791392_6 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000008936 188.0
LYD3_k127_4791392_7 - - - - 0.000000000000000000000000000000001835 136.0
LYD3_k127_4791392_8 - - - - 0.0000000000000000000000000000005745 126.0
LYD3_k127_4791392_9 energy transducer activity K03832 - - 0.000000000000000000000000002339 120.0
LYD3_k127_4792523_0 peptidase K01278,K18574 - 3.4.14.12,3.4.14.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 389.0
LYD3_k127_4792523_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 314.0
LYD3_k127_4795803_0 PFAM Zinc carboxypeptidase - - - 9.639e-221 700.0
LYD3_k127_4795803_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 338.0
LYD3_k127_4801165_0 PFAM peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.0 1810.0
LYD3_k127_4801165_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1136.0
LYD3_k127_4801165_2 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009348 591.0
LYD3_k127_4801165_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 340.0
LYD3_k127_4801165_4 - - - - 0.0000000000000000000000000013 113.0
LYD3_k127_4808801_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 7.262e-305 938.0
LYD3_k127_4808801_1 ABC transporter K18890 - - 1.731e-267 834.0
LYD3_k127_4808801_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008595 406.0
LYD3_k127_4808801_3 Beta-lactamase superfamily domain K06136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 367.0
LYD3_k127_4808801_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001292 246.0
LYD3_k127_4808801_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000000000000000003172 198.0
LYD3_k127_4808801_7 metallopeptidase activity K01448,K07315,K21470 - 3.1.3.3,3.5.1.28 0.00000000000000000000000000000000004432 148.0
LYD3_k127_4808801_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000006187 100.0
LYD3_k127_480919_0 COGs COG4995 conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002025 278.0
LYD3_k127_480919_1 AMP binding - - - 0.000000000000003695 76.0
LYD3_k127_481557_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 9.81e-201 648.0
LYD3_k127_481557_1 PFAM Aminotransferase class I and II K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 374.0
LYD3_k127_481557_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001209 280.0
LYD3_k127_481557_3 SprB repeat - - - 0.00000000000000000000000000000000000000000167 172.0
LYD3_k127_481557_4 domain, Protein - - - 0.00000000000000000000000000000000004882 141.0
LYD3_k127_4824860_0 PHP domain protein - - - 0.00000000000000000000000000000000000000000000000000002841 206.0
LYD3_k127_4824860_1 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000001355 180.0
LYD3_k127_4824860_2 endonuclease I - - - 0.000000000000000000002816 102.0
LYD3_k127_4826505_0 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 613.0
LYD3_k127_4826505_1 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009234 325.0
LYD3_k127_4826505_2 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K00826,K02619 - 2.6.1.42,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000004462 261.0
LYD3_k127_4826505_3 - - - - 0.000000000000000000000000000000000000003458 166.0
LYD3_k127_4833559_0 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.0 1079.0
LYD3_k127_4833559_1 Chaperone of endosialidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 374.0
LYD3_k127_4833559_2 Transglutaminase-like superfamily - - - 0.0001267 49.0
LYD3_k127_4836299_0 PFAM sulfatase - - - 6.764e-263 826.0
LYD3_k127_4836299_1 PFAM sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 554.0
LYD3_k127_4836299_2 Thiopurine S-methyltransferase (TPMT) - - - 0.00000000000000000000000000000000000000000000000000000000000000000004512 235.0
LYD3_k127_4836299_3 Phosphoesterase PA-phosphatase related K19302 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000001532 208.0
LYD3_k127_4839097_0 Belongs to the heme-copper respiratory oxidase family K15862 - 1.9.3.1 0.0 1225.0
LYD3_k127_4839097_1 glycosyl transferase, family 2 K22278 - 3.5.1.104 0.0 1191.0
LYD3_k127_4839097_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.0 1043.0
LYD3_k127_4839097_3 cytochrome c oxidase - - - 2.984e-209 659.0
LYD3_k127_4839097_4 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008256 393.0
LYD3_k127_4839097_5 PFAM Cytochrome c, class I K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 301.0
LYD3_k127_4839097_6 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.00000000000000000000000000000000000000000000000000000000003035 213.0
LYD3_k127_4839097_7 FixH - - - 0.0000000000000000000000000000000002515 137.0
LYD3_k127_4839097_8 Cytochrome c - - - 0.000000000003312 67.0
LYD3_k127_4839097_9 TIGRFAM cytochrome oxidase maturation protein, cbb3-type - - - 0.000000000004557 69.0
LYD3_k127_4841175_0 amidohydrolase - - - 4.377e-251 789.0
LYD3_k127_4841175_1 ribosomal protein - - - 0.000000000000000000000000000000000003531 141.0
LYD3_k127_4845088_0 Beta-eliminating lyase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 491.0
LYD3_k127_4845088_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 353.0
LYD3_k127_4845088_2 Protein of unknown function (DUF3078) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 291.0
LYD3_k127_4845088_3 CoA binding domain K06929 - - 0.000000000000000000000000000000000000000000000000000000000000000001505 229.0
LYD3_k127_4855427_0 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009608 280.0
LYD3_k127_4855427_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000009651 52.0
LYD3_k127_4858405_0 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 316.0
LYD3_k127_4858405_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000002666 166.0
LYD3_k127_4858405_2 NmrA-like family - - - 0.0000000000000000000000000000003698 127.0
LYD3_k127_4868922_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1361.0
LYD3_k127_4868922_1 COG0308 Aminopeptidase N - - - 1.17e-321 995.0
LYD3_k127_4868922_2 P-loop ATPase protein family - - - 1.155e-239 748.0
LYD3_k127_4868922_3 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008398 356.0
LYD3_k127_4868922_4 3-hydroxyacyl-CoA dehydrogenase K00074,K17735 - 1.1.1.108,1.1.1.157 0.000000000000000000000000000000000000000000000000000001899 198.0
LYD3_k127_4868922_5 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000000000001951 185.0
LYD3_k127_4868922_6 PFAM Peptidase M22, glycoprotease K14742 - - 0.000000000000000000000000000000001092 133.0
LYD3_k127_4868922_7 - - - - 0.00000000000000000000003903 102.0
LYD3_k127_4870043_0 DNA helicase K03657 - 3.6.4.12 0.0 1257.0
LYD3_k127_4870043_1 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866 424.0
LYD3_k127_4870043_2 PFAM Glycosyl hydrolases family 25 K07273 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 321.0
LYD3_k127_4870043_3 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000002849 208.0
LYD3_k127_4870043_4 MerC mercury resistance protein - - - 0.00000000000000000000000000000000000000000000000000000001375 200.0
LYD3_k127_4870043_5 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000000000000000001492 188.0
LYD3_k127_4875879_0 Belongs to the glycosyl hydrolase 13 family - - - 1.338e-276 871.0
LYD3_k127_4875879_1 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000002705 138.0
LYD3_k127_4877210_0 Photosynthesis system II assembly factor YCF48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 311.0
LYD3_k127_4877210_1 FAD-binding domain - - - 0.00000000000000000003827 91.0
LYD3_k127_4891929_0 COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit K02621 - - 0.0 1364.0
LYD3_k127_4891929_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 509.0
LYD3_k127_4891929_2 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000000002068 235.0
LYD3_k127_4891929_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000002638 243.0
LYD3_k127_489438_0 PFAM 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005681 501.0
LYD3_k127_489438_1 Belongs to the glycosyl hydrolase 13 family K01200 - 3.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 492.0
LYD3_k127_489438_2 Aminopeptidase K01372 - 3.4.22.40 0.0000000000000000000000000000000000000000000000000000000000000000000002506 252.0
LYD3_k127_489438_4 - - - - 0.000000000000000001413 90.0
LYD3_k127_489438_5 - - - - 0.000003318 52.0
LYD3_k127_4897892_0 PFAM Multi antimicrobial extrusion protein MatE K03327 - - 0.000000000000000000000000000000000000002144 151.0
LYD3_k127_4909579_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 510.0
LYD3_k127_4909579_1 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000002197 236.0
LYD3_k127_4909579_2 PFAM MazG nucleotide pyrophosphohydrolase - - - 0.00000000000000000000000000000000000000000000001171 175.0
LYD3_k127_4911387_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 597.0
LYD3_k127_4911387_1 PFAM Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 349.0
LYD3_k127_4911387_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 342.0
LYD3_k127_4911387_3 amidohydrolase K20810 - 3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 335.0
LYD3_k127_4911387_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000005027 206.0
LYD3_k127_4911387_5 - - - - 0.00000000000000000000000000000000000000000000000002359 186.0
LYD3_k127_4911387_6 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000000001485 133.0
LYD3_k127_4911387_7 Two component regulator propeller domain protein - - - 0.00000000000002827 73.0
LYD3_k127_4922731_0 OstA-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000085 255.0
LYD3_k127_4922731_1 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0000000000000000000000000000000000000000000000000000000000000000002922 237.0
LYD3_k127_4938829_0 Sortilin, neurotensin receptor 3, - - - 0.0 1035.0
LYD3_k127_4938829_1 - - - - 0.00000000000000000000000000000000000000000000000000000000006358 212.0
LYD3_k127_4943693_0 Belongs to the peptidase S51 family K13282 - 3.4.15.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006674 426.0
LYD3_k127_4943693_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000002937 188.0
LYD3_k127_4944459_0 Peptidase family M28 - - - 5.624e-233 732.0
LYD3_k127_4944459_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 373.0
LYD3_k127_4944459_10 SnoaL-like polyketide cyclase - - - 0.0001189 52.0
LYD3_k127_4944459_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000003689 241.0
LYD3_k127_4944459_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000004581 231.0
LYD3_k127_4944459_5 PFAM Peptidase C14, caspase catalytic - - - 0.000000000000000000000000000000000000000005573 171.0
LYD3_k127_4944459_6 cytochrome - - - 0.000000000000000000003708 96.0
LYD3_k127_4944459_7 protein kinase activity - - - 0.000000000000003107 87.0
LYD3_k127_4944459_8 long-chain fatty acid transporting porin activity - - - 0.00000000004536 63.0
LYD3_k127_4944459_9 23S rRNA-intervening sequence protein - - - 0.000000000666 63.0
LYD3_k127_4960398_0 Papain family cysteine protease - - - 1.413e-220 695.0
LYD3_k127_4960398_1 Protein of unknown function, DUF255 - - - 0.0000000000000000000000000000000000000000000000000000000005392 205.0
LYD3_k127_4960398_2 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000000000000000000000001285 179.0
LYD3_k127_4961637_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009683 533.0
LYD3_k127_4961637_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 301.0
LYD3_k127_4961637_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001742 280.0
LYD3_k127_4963191_0 Protein of unknown function (DUF1501) - - - 1.559e-214 670.0
LYD3_k127_4963191_1 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 614.0
LYD3_k127_4963191_2 seryl-tRNA synthetase K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 604.0
LYD3_k127_4963191_3 OPT oligopeptide transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000145 201.0
LYD3_k127_4963191_4 Cytochrome c - - - 0.0008371 48.0
LYD3_k127_4968046_0 PFAM NAD dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007414 573.0
LYD3_k127_4968046_1 Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 559.0
LYD3_k127_4968046_2 phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 419.0
LYD3_k127_4968046_3 phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004132 383.0
LYD3_k127_4968046_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 341.0
LYD3_k127_4968046_5 COGs COG1392 Phosphate transport regulator (distant homolog of PhoU) K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 313.0
LYD3_k127_4968046_6 - - - - 0.0000000000000000000000000002094 121.0
LYD3_k127_4981333_0 COG2366 Protein related to penicillin acylase K01434 - 3.5.1.11 6.05e-252 788.0
LYD3_k127_4981333_1 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004457 253.0
LYD3_k127_4982445_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 416.0
LYD3_k127_4982445_1 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000006764 223.0
LYD3_k127_4982445_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000001805 136.0
LYD3_k127_4982445_3 outer membrane efflux protein - - - 0.0000000000000000000000000341 109.0
LYD3_k127_4989211_0 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000002075 261.0
LYD3_k127_4989211_1 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 0.0000000000000000000000000000000000000001072 156.0
LYD3_k127_4989211_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000000000000000000000001196 124.0
LYD3_k127_4989211_3 Cytochrome C oxidase, cbb3-type, subunit III K02305 - - 0.0000000000000000000002788 100.0
LYD3_k127_5011258_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 475.0
LYD3_k127_5011258_1 metallophosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 457.0
LYD3_k127_5012562_0 PFAM Methyltransferase type 12 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 365.0
LYD3_k127_5012562_1 Glutamine cyclotransferase K00683 - 2.3.2.5 0.00000000000000000000000000000000000000000000000000000009067 197.0
LYD3_k127_5012562_2 receptor - - - 0.000000000000000000000000000000000000000001318 158.0
LYD3_k127_501541_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.849e-244 758.0
LYD3_k127_501541_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004325 360.0
LYD3_k127_501541_2 NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 295.0
LYD3_k127_501541_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 288.0
LYD3_k127_501541_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000002093 206.0
LYD3_k127_501541_5 Domain of unknown function (DUF4440) - - - 0.0000000000000000001984 94.0
LYD3_k127_501541_6 PFAM Tetratricopeptide - - - 0.00000000001578 70.0
LYD3_k127_5018503_0 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 590.0
LYD3_k127_5018503_1 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003408 544.0
LYD3_k127_5018503_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 469.0
LYD3_k127_5018503_3 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 353.0
LYD3_k127_5018503_4 EthD domain - - - 0.00000000000000000000000000000000000716 138.0
LYD3_k127_5031446_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1176.0
LYD3_k127_5031446_1 SMART Phosphatidic acid phosphatase type 2 haloperoxidase K19302 - 3.6.1.27 0.00000000000000000000000000000000004817 144.0
LYD3_k127_5040358_0 Alanine dehydrogenase/PNT, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 578.0
LYD3_k127_5040358_1 - - - - 0.0000000000000000000000000000001057 134.0
LYD3_k127_5040358_2 COG0457 FOG TPR repeat - - - 0.000000000000000001552 93.0
LYD3_k127_5046518_0 PFAM KWG Leptospira - - - 0.00000000000000000000000000000000000000000000000000009927 203.0
LYD3_k127_5051934_0 PFAM PKD domain - - - 0.0 1293.0
LYD3_k127_5051934_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000001059 146.0
LYD3_k127_5056759_0 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 4.564e-236 745.0
LYD3_k127_5056759_1 Transport of potassium into the cell K03549 - - 4.665e-215 674.0
LYD3_k127_5056759_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 491.0
LYD3_k127_5056759_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 357.0
LYD3_k127_5056759_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003377 273.0
LYD3_k127_5056759_5 protein-disulfide reductase activity K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000002839 162.0
LYD3_k127_5057388_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 599.0
LYD3_k127_5057388_1 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001213 271.0
LYD3_k127_5057388_2 - - - - 0.00000000000000000000000000000000000000000000000000000000003132 217.0
LYD3_k127_5063855_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 420.0
LYD3_k127_5063855_1 Peptidase, M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001963 336.0
LYD3_k127_5071634_0 fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005821 568.0
LYD3_k127_5071634_1 Gliding motility protein, GldB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009382 261.0
LYD3_k127_5071634_2 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000002057 150.0
LYD3_k127_5071634_3 - - - - 0.000000000000000000000005111 106.0
LYD3_k127_5079001_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 3.199e-213 668.0
LYD3_k127_5079001_1 hydrolase, family 3 - - - 0.00000000000000000000003473 100.0
LYD3_k127_5079611_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 - 3.6.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001058 278.0
LYD3_k127_5079611_2 - - - - 0.0000000000000000000000118 115.0
LYD3_k127_5082053_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1244.0
LYD3_k127_509822_0 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 596.0
LYD3_k127_509822_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 537.0
LYD3_k127_509822_2 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 496.0
LYD3_k127_509822_3 - - - - 0.000000000000000000000000000000000000000002381 158.0
LYD3_k127_5112037_0 ABC transporter transmembrane region K06147,K11085 - - 5.741e-256 801.0
LYD3_k127_5112037_1 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 385.0
LYD3_k127_5112037_2 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006899 371.0
LYD3_k127_5112037_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008675 267.0
LYD3_k127_5112037_4 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000003159 239.0
LYD3_k127_5112037_5 - - - - 0.000000000000000007766 90.0
LYD3_k127_5122067_0 Histidine kinase - - - 0.0 1088.0
LYD3_k127_5122067_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 3.196e-220 708.0
LYD3_k127_5122067_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004629 522.0
LYD3_k127_5122067_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 492.0
LYD3_k127_5122067_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 424.0
LYD3_k127_5122067_5 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005834 383.0
LYD3_k127_5122067_6 COG0642 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 390.0
LYD3_k127_5122067_7 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000000003057 198.0
LYD3_k127_5122067_8 phosphate ion binding - - - 0.000000000000000000007847 97.0
LYD3_k127_5124144_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 1.684e-246 777.0
LYD3_k127_5124144_1 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000974 519.0
LYD3_k127_5124144_2 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 472.0
LYD3_k127_5124144_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 329.0
LYD3_k127_5142396_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 489.0
LYD3_k127_5142396_1 SIS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 394.0
LYD3_k127_5142396_2 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005056 365.0
LYD3_k127_5142396_3 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 355.0
LYD3_k127_5145979_0 Heat shock protein Hsp90 K04079 - - 3.583e-306 948.0
LYD3_k127_5145979_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 361.0
LYD3_k127_5145979_2 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000657 81.0
LYD3_k127_5145979_3 alginic acid biosynthetic process - - - 0.0000006412 57.0
LYD3_k127_5156822_0 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 1.692e-307 951.0
LYD3_k127_5164277_0 Belongs to the formate--tetrahydrofolate ligase family K01938 GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 1.515e-264 824.0
LYD3_k127_5164277_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 462.0
LYD3_k127_5164277_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 296.0
LYD3_k127_5164277_3 - - - - 0.00000000000000000000000000000000000002246 147.0
LYD3_k127_5164277_4 - - - - 0.00000000000000000000000000000000006297 138.0
LYD3_k127_5164277_5 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000007616 141.0
LYD3_k127_5167771_0 Peptidase family M1 domain - - - 0.0 1188.0
LYD3_k127_5167771_1 Band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 369.0
LYD3_k127_5167771_2 HupE / UreJ protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008236 271.0
LYD3_k127_5167771_3 - - - - 0.000000000000000000000000000000000000000000000257 173.0
LYD3_k127_5167771_4 esterase - - - 0.000000000000000000000000000001087 124.0
LYD3_k127_5167771_5 Putative esterase - - - 0.000000000000000000000002871 102.0
LYD3_k127_5167771_6 - - - - 0.000000000000002905 77.0
LYD3_k127_5167997_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203 582.0
LYD3_k127_5167997_1 PFAM metallophosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005422 359.0
LYD3_k127_5167997_10 PEP-CTERM system TPR-repeat lipoprotein - - - 0.000003151 58.0
LYD3_k127_5167997_2 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 304.0
LYD3_k127_5167997_3 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004716 273.0
LYD3_k127_5167997_4 GCN5 family acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000009467 224.0
LYD3_k127_5167997_5 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.000000000000000000000000000000000000000000000000000009308 194.0
LYD3_k127_5167997_6 Cold shock protein domain - - - 0.0000000000000000000000000000000000000000000000000001869 189.0
LYD3_k127_5167997_7 - - - - 0.000000000000000000000000000000000001439 141.0
LYD3_k127_5167997_8 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.000000000000000000000000000003063 120.0
LYD3_k127_5167997_9 PFAM Peptidase C14, caspase catalytic - - - 0.0000000001748 73.0
LYD3_k127_5173179_0 Esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000574 480.0
LYD3_k127_5173179_1 Diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 338.0
LYD3_k127_5178399_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.0 1048.0
LYD3_k127_5178399_1 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000006184 212.0
LYD3_k127_5178399_2 - - - - 0.000000000000000000000000000006577 123.0
LYD3_k127_5185080_0 PFAM Cytochrome c assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 325.0
LYD3_k127_5185080_1 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 311.0
LYD3_k127_5185080_2 PFAM Cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 310.0
LYD3_k127_5185080_3 - - - - 0.0000000000000163 84.0
LYD3_k127_5185080_4 - - - - 0.000001183 53.0
LYD3_k127_5186442_0 Peptidase S46 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002013 291.0
LYD3_k127_5186442_1 acetyl-CoA hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003468 247.0
LYD3_k127_5192218_0 PFAM Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000000001816 200.0
LYD3_k127_5192218_1 Colicin V production protein K03558 - - 0.0000000000000000000000000000000000000000000000004817 180.0
LYD3_k127_5192218_2 PFAM Peptidase C14, caspase catalytic - - - 0.00000000000000000000000000000000000000000001594 171.0
LYD3_k127_5212698_0 nucleotide catabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000634 340.0
LYD3_k127_5212698_1 lysyltransferase activity K07027 - - 0.0000000000000000000000000000000000008589 148.0
LYD3_k127_5226863_0 Gaf domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008521 561.0
LYD3_k127_5226863_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976 - - 0.00000000000000000000000000000000000000000000000000000000002227 216.0
LYD3_k127_5226863_2 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000008223 168.0
LYD3_k127_5226863_3 - - - - 0.0000008413 57.0
LYD3_k127_5230911_0 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 383.0
LYD3_k127_5230911_1 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000247 275.0
LYD3_k127_5230911_2 cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000001558 229.0
LYD3_k127_5230911_3 Prokaryotic Cytochrome C oxidase subunit IV - - - 0.00000000000000000000000000000000000000000000000002556 184.0
LYD3_k127_5230911_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000001504 136.0
LYD3_k127_5231324_0 Belongs to the arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002174 540.0
LYD3_k127_5231324_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 441.0
LYD3_k127_5231324_3 fatty acid desaturase K00508 - 1.14.19.3 0.0000000001623 62.0
LYD3_k127_5246232_0 DEAD DEAH box helicase K03724 - - 3.84e-310 961.0
LYD3_k127_5246232_1 PFAM Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001063 236.0
LYD3_k127_5246232_2 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000000001878 141.0
LYD3_k127_5258879_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.572e-259 809.0
LYD3_k127_5258879_1 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000009189 230.0
LYD3_k127_5267296_0 receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 516.0
LYD3_k127_5267296_1 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000002399 240.0
LYD3_k127_5272537_0 HI0933 family K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 592.0
LYD3_k127_5272537_1 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 477.0
LYD3_k127_5272537_2 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 438.0
LYD3_k127_5272537_3 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000003635 50.0
LYD3_k127_5272537_4 PFAM Phospholipid glycerol acyltransferase - - - 0.00001409 51.0
LYD3_k127_5291563_0 Belongs to the PdxA family K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006853 548.0
LYD3_k127_5291563_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 383.0
LYD3_k127_5291563_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 304.0
LYD3_k127_5291563_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000002009 236.0
LYD3_k127_5291563_4 alginic acid biosynthetic process - - - 0.0009159 48.0
LYD3_k127_5300604_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008136 559.0
LYD3_k127_5300604_1 deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007493 401.0
LYD3_k127_5300604_2 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 369.0
LYD3_k127_5300604_3 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005268 299.0
LYD3_k127_5300604_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000002099 134.0
LYD3_k127_5300604_5 secreted Zn-dependent protease - - - 0.000000000000000000008964 94.0
LYD3_k127_5300604_6 energy transducer activity K03832 - - 0.000001247 56.0
LYD3_k127_5300604_7 Bile acid sodium symporter - - - 0.000729 44.0
LYD3_k127_5310255_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K00615 - 2.2.1.1 0.0 1175.0
LYD3_k127_5310255_1 Phenazine biosynthesis-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 361.0
LYD3_k127_5310255_2 Protein of unknown function (DUF1573) - - - 0.00000000000000000000000000000000000000000001055 168.0
LYD3_k127_5310255_3 Protein of unknown function (DUF1573) - - - 0.0000000000000000000000000000001126 129.0
LYD3_k127_5310255_4 DinB family - - - 0.000000000000000000000000000001104 127.0
LYD3_k127_5310255_5 Dodecin K09165 - - 0.000000000000000000000003418 104.0
LYD3_k127_5334116_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 8.051e-201 643.0
LYD3_k127_5334116_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 557.0
LYD3_k127_5334116_2 - - - - 0.0000000000000000000000000001049 118.0
LYD3_k127_5334116_3 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000003684 117.0
LYD3_k127_5334116_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.00000000000000547 75.0
LYD3_k127_5334573_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1167.0
LYD3_k127_5334573_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 609.0
LYD3_k127_5335759_0 TonB-dependent receptor - - - 1.011e-264 842.0
LYD3_k127_5335759_1 Endonuclease exonuclease phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 406.0
LYD3_k127_5335759_2 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000001698 130.0
LYD3_k127_5335759_3 PHP domain protein - - - 0.0000000000007238 78.0
LYD3_k127_534050_0 PFAM polysaccharide biosynthesis protein K03328 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 335.0
LYD3_k127_534050_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000000000000000962 183.0
LYD3_k127_534050_2 domain, Protein - - - 0.00000000002176 75.0
LYD3_k127_5366086_0 PFAM sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 499.0
LYD3_k127_5366086_1 Two component regulator propeller - - - 0.000000001595 63.0
LYD3_k127_5366266_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.0 1517.0
LYD3_k127_5366266_1 PFAM Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008104 417.0
LYD3_k127_5366266_2 Cold-shock protein K03704 - - 0.0000000000000000577 82.0
LYD3_k127_5366642_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0 1015.0
LYD3_k127_5366642_1 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 518.0
LYD3_k127_5366642_2 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000001771 266.0
LYD3_k127_5366642_3 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000003144 153.0
LYD3_k127_5366642_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA - - - 0.000000000000000000000000000000000000002372 151.0
LYD3_k127_5366642_5 FeoA K04758 - - 0.000000000000000000000000001179 113.0
LYD3_k127_5366677_0 Nucleoside K03289,K11537 - - 2.535e-204 644.0
LYD3_k127_5366677_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 427.0
LYD3_k127_5366677_2 FG-GAP repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000506 253.0
LYD3_k127_5366677_3 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000000000000000005436 211.0
LYD3_k127_5366677_4 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.00000000000000000000153 96.0
LYD3_k127_5366677_5 Belongs to the thioredoxin family K03671 - - 0.000369 46.0
LYD3_k127_5366677_6 Head domain of trimeric autotransporter adhesin K21449 - - 0.0009817 51.0
LYD3_k127_5367919_0 PFAM GH3 auxin-responsive promoter - - - 1.663e-286 886.0
LYD3_k127_5367919_1 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000002514 171.0
LYD3_k127_5367919_2 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000004156 158.0
LYD3_k127_5383018_0 decarboxylase K01585 - 4.1.1.19 4.865e-213 662.0
LYD3_k127_5383178_0 polysaccharide deacetylase K01179 - 3.2.1.4 1.876e-287 897.0
LYD3_k127_5383178_1 PFAM Cys Met metabolism K01739,K01758,K01760 - 2.5.1.48,4.4.1.1,4.4.1.8 1.626e-203 638.0
LYD3_k127_5383178_2 Fatty acid hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005168 380.0
LYD3_k127_5383178_3 Protein of unknown function (DUF2400) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304 369.0
LYD3_k127_5383178_4 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 349.0
LYD3_k127_5383178_5 - - - - 0.00000000000001405 77.0
LYD3_k127_5383178_6 - - - - 0.0000000000002491 70.0
LYD3_k127_5386461_0 Multidrug transporter MatE K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004564 497.0
LYD3_k127_5386461_1 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 384.0
LYD3_k127_5386461_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000075 84.0
LYD3_k127_5389471_0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 411.0
LYD3_k127_5389471_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 343.0
LYD3_k127_5389471_2 Phosphoglycerate mutase family - - - 0.00000000000000000000000000003375 123.0
LYD3_k127_5389690_0 Peptidase C1-like family K01372 - 3.4.22.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 293.0
LYD3_k127_5389690_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000006032 139.0
LYD3_k127_5389690_2 L,D-transpeptidase catalytic domain - - - 0.000000000000000039 81.0
LYD3_k127_5396984_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 5.58e-280 863.0
LYD3_k127_5396984_1 Glycosyl hydrolases family 35 K12308 - 3.2.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004406 535.0
LYD3_k127_5396984_2 Metalloenzyme superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 522.0
LYD3_k127_5396984_3 PFAM coagulation factor 5 8 type K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009422 421.0
LYD3_k127_5396984_4 Glycosyl hydrolases family 35 K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007903 387.0
LYD3_k127_5396984_5 Glucose / Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001693 263.0
LYD3_k127_5396984_6 C-terminal domain of CHU protein family - - - 0.0000000000000000000000009009 121.0
LYD3_k127_5396984_7 Hep Hag repeat protein K01179,K19233,K21449 - 3.2.1.4 0.000000000001012 82.0
LYD3_k127_5397234_0 PFAM PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 321.0
LYD3_k127_5397234_1 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002271 278.0
LYD3_k127_5397234_2 Succinate dehydrogenase fumarate reductase Fe-S protein subunit K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000004116 161.0
LYD3_k127_5410592_0 PFAM SPFH domain Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004677 328.0
LYD3_k127_5410592_1 transcription regulator containing HTH domain K18831 - - 0.0000000000000000000000000000000000000000007983 159.0
LYD3_k127_5410592_2 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system K19166 - - 0.00000000000000000000000009526 110.0
LYD3_k127_5410592_3 May nick specific sequences that contain T G mispairs resulting from m5C-deamination K07458 - - 0.000001063 55.0
LYD3_k127_5410592_4 ORF6N domain - - - 0.0001032 45.0
LYD3_k127_543473_0 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000000000000001064 141.0
LYD3_k127_543473_1 PFAM Rhodanese-like domain - - - 0.0000000000000000818 81.0
LYD3_k127_543473_2 COG1108 ABC-type Mn2 Zn2 transport systems, permease components K09816 - - 0.0000000006554 65.0
LYD3_k127_5436333_0 serine-type peptidase activity K08676 - - 0.0 1325.0
LYD3_k127_5436333_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.798e-239 744.0
LYD3_k127_5436333_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 535.0
LYD3_k127_5436333_3 - - - - 0.00000000000000000002197 98.0
LYD3_k127_5436333_4 - - - - 0.00000000002955 69.0
LYD3_k127_5444574_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.0 1212.0
LYD3_k127_5444574_1 mannose-1-phosphate guanylyltransferase K00971 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 549.0
LYD3_k127_5444574_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 458.0
LYD3_k127_5444574_3 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 373.0
LYD3_k127_5444574_4 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000175 179.0
LYD3_k127_5444574_5 YjbR - - - 0.000000000000000000000000000000000000000000001505 167.0
LYD3_k127_5463063_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 487.0
LYD3_k127_5463063_1 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 380.0
LYD3_k127_5463063_2 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001526 279.0
LYD3_k127_5472804_0 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 3.156e-206 656.0
LYD3_k127_5472804_1 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007689 525.0
LYD3_k127_5472804_2 - - - - 0.00000000000000000000000000000000000009633 151.0
LYD3_k127_5473087_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 0.0 1014.0
LYD3_k127_5476688_0 Domain of unknown function (DUF4382) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002847 278.0
LYD3_k127_5476688_1 PFAM Uncharacterised BCR, COG1649 - - - 0.0000000000000000000005496 103.0
LYD3_k127_5476688_2 Peptidase family M28 - - - 0.000000000000001451 79.0
LYD3_k127_5482030_0 SMART Integrin alpha beta-propellor repeat protein - - - 3.328e-309 993.0
LYD3_k127_5482030_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000002789 186.0
LYD3_k127_5483721_0 Formiminotransferase domain, N-terminal subdomain K00603,K13990 - 2.1.2.5,4.3.1.4 4.786e-262 816.0
LYD3_k127_5483721_1 Belongs to the arginase family K01479,K12255 - 3.5.3.7,3.5.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003809 520.0
LYD3_k127_5483721_2 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 363.0
LYD3_k127_5483721_3 PFAM sulfatase - - - 0.000000000000000000000000000000000000000000000000000114 189.0
LYD3_k127_5486440_0 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000964 293.0
LYD3_k127_5486440_1 Acetyltransferase, gnat family K03829 - - 0.000000000000000000000000000000000000000000000000000000000000004375 219.0
LYD3_k127_5486440_2 - - - - 0.000000000000000901 84.0
LYD3_k127_5497484_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 0.0 1236.0
LYD3_k127_5497484_1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 - - 1.784e-194 616.0
LYD3_k127_5497484_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 399.0
LYD3_k127_5509664_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 560.0
LYD3_k127_5509664_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009087 413.0
LYD3_k127_5521140_0 TamB, inner membrane protein subunit of TAM complex - - - 9.621e-198 636.0
LYD3_k127_5521140_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 535.0
LYD3_k127_5521140_2 Protein of unknown function (DUF1572) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001236 269.0
LYD3_k127_5521140_3 Outer membrane protein beta-barrel domain - - - 0.0000001106 62.0
LYD3_k127_5522190_0 Outer membrane protein beta-barrel family - - - 0.0 1078.0
LYD3_k127_5522190_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 460.0
LYD3_k127_5522190_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007092 287.0
LYD3_k127_5522190_3 Protein of unknown function (Porph_ging) - - - 0.000000000000000000000000000000000000000000000000009276 188.0
LYD3_k127_5523941_0 L,D-transpeptidase catalytic domain K21470 - - 6.491e-194 617.0
LYD3_k127_5523941_1 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007491 298.0
LYD3_k127_5523941_2 - - - - 0.000000000000000000000000000000000000003451 151.0
LYD3_k127_5523941_4 - - - - 0.00000000000000002933 82.0
LYD3_k127_5524905_0 gliding motility-associated lipoprotein GldJ - - - 1.2e-201 636.0
LYD3_k127_5524905_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008213 420.0
LYD3_k127_5555684_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 382.0
LYD3_k127_5555684_1 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 331.0
LYD3_k127_5555684_2 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639,K00652 - 2.3.1.29,2.3.1.47 0.00000000000000000000000000292 115.0
LYD3_k127_5557850_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 1.849e-213 667.0
LYD3_k127_5557850_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005083 477.0
LYD3_k127_5557850_2 Integral membrane protein TerC family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009405 340.0
LYD3_k127_5557850_3 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00002042 46.0
LYD3_k127_5564307_0 Lycopene cyclase protein K06443 - 5.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005741 357.0
LYD3_k127_5564307_1 Fatty acid hydroxylase superfamily K15746 - 1.14.15.24 0.00000000000000000000000000000000000000000000000000000000000000002244 226.0
LYD3_k127_5564669_0 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0 1108.0
LYD3_k127_5564669_1 Mandelate racemase muconate lactonizing enzyme K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 510.0
LYD3_k127_5564669_2 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 383.0
LYD3_k127_5564669_3 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008279 267.0
LYD3_k127_5564669_4 Glyco_18 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001132 271.0
LYD3_k127_5564669_5 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000001183 156.0
LYD3_k127_5564669_6 Pkd domain containing protein - - - 0.00000000000000000005082 100.0
LYD3_k127_5564669_7 - - - - 0.0000000000003489 76.0
LYD3_k127_5568939_0 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005659 546.0
LYD3_k127_5568939_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 408.0
LYD3_k127_5568939_2 PFAM alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 296.0
LYD3_k127_5568939_3 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000004231 201.0
LYD3_k127_5568939_4 O-Antigen ligase - - - 0.00000000000000000000000000000000000000000000000003161 184.0
LYD3_k127_5572077_0 pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 428.0
LYD3_k127_5572077_1 Belongs to the sulfur carrier protein TusA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002289 238.0
LYD3_k127_5572077_2 part of a sulfur-relay system K11179,K17218 - 1.8.5.4 0.00000000000000000000000000000000000000001752 154.0
LYD3_k127_5580187_0 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 4.892e-265 826.0
LYD3_k127_5580187_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 459.0
LYD3_k127_5580187_2 OmpA MotB domain protein K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000142 273.0
LYD3_k127_5580187_3 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000001672 215.0
LYD3_k127_5580187_4 OmpA MotB domain protein K03286 - - 0.00000000000000000000000000000000000000000000006277 178.0
LYD3_k127_5587017_0 Polysaccharide biosynthesis protein - - - 2.862e-213 673.0
LYD3_k127_5596141_0 Belongs to the glycosyl hydrolase 18 family K01183 - 3.2.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 473.0
LYD3_k127_5596141_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00262 - 1.4.1.4 0.00000000000000000000000000000000000000000000000006782 180.0
LYD3_k127_5596141_2 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01576,K01652 - 2.2.1.6,4.1.1.7 0.0000000000000000000000000001519 116.0
LYD3_k127_5596301_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 4.086e-249 774.0
LYD3_k127_5596301_1 peptidase K01278,K18574 - 3.4.14.12,3.4.14.5 7.728e-202 642.0
LYD3_k127_5596301_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000002643 190.0
LYD3_k127_5598151_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 567.0
LYD3_k127_5598151_1 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 411.0
LYD3_k127_5598151_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000001313 123.0
LYD3_k127_5618197_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 6.958e-248 771.0
LYD3_k127_5618197_1 Acts as a magnesium transporter K06213 - - 6.803e-222 695.0
LYD3_k127_5618197_2 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain K07117 - - 0.00000000000000000000000000000000000000000000000000000000002705 207.0
LYD3_k127_5618197_3 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000543 164.0
LYD3_k127_5618197_4 CHRD domain - - - 0.0000000000000000000000001931 113.0
LYD3_k127_5633248_0 Protein of unknown function (DUF2452) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 331.0
LYD3_k127_5633248_1 PKD domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001716 279.0
LYD3_k127_5633248_2 He_PIG associated, NEW1 domain of bacterial glycohydrolase - - - 0.00000000000000000000000000000000000000000000000000003145 196.0
LYD3_k127_5633248_3 Protein of unknown function, DUF255 - - - 0.00000000000000000000000000000000000000000000000009402 183.0
LYD3_k127_5638605_0 PFAM Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 431.0
LYD3_k127_5638605_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002282 269.0
LYD3_k127_5638605_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000003442 194.0
LYD3_k127_5638605_3 cell redox homeostasis K03671 - - 0.0000000000000000000000000000000002191 140.0
LYD3_k127_5652_0 Radical SAM - - - 1.083e-205 643.0
LYD3_k127_5652_1 COGs COG0389 Nucleotidyltransferase DNA polymerase involved in DNA repair K03502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009825 569.0
LYD3_k127_5652_10 META domain - - - 0.0000000000007903 74.0
LYD3_k127_5652_2 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006363 544.0
LYD3_k127_5652_3 Protein of unknown function (DUF5131) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009955 391.0
LYD3_k127_5652_4 2'-5' RNA ligase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009706 265.0
LYD3_k127_5652_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000366 245.0
LYD3_k127_5652_6 PFAM Transcription antitermination protein, NusG, N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000001416 216.0
LYD3_k127_5652_7 Belongs to the peptidase S24 family K03503 - - 0.00000000000000000000000000000000000000000000000000000002967 199.0
LYD3_k127_5652_8 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000001486 171.0
LYD3_k127_5652_9 Vault protein inter-alpha-trypsin domain - - - 0.0000000000000000003791 93.0
LYD3_k127_5653353_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1120.0
LYD3_k127_5653353_1 COGs COG0659 Sulfate permease and related transporter (MFS superfamily) K03321 - - 9.932e-216 681.0
LYD3_k127_5653353_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 458.0
LYD3_k127_5653353_3 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002545 386.0
LYD3_k127_5653353_4 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004553 373.0
LYD3_k127_5653353_5 GPR1/FUN34/yaaH family K07034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 316.0
LYD3_k127_5653353_6 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 321.0
LYD3_k127_5653353_8 - - - - 0.0000001914 53.0
LYD3_k127_5677549_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000001786 221.0
LYD3_k127_5677549_1 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000303 164.0
LYD3_k127_5677549_2 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000357 162.0
LYD3_k127_5677549_3 PFAM FAD dependent oxidoreductase - - - 0.000000000002485 68.0
LYD3_k127_568160_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 4.911e-229 728.0
LYD3_k127_568160_1 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 346.0
LYD3_k127_568160_10 - - - - 0.0000000002906 65.0
LYD3_k127_568160_2 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002244 240.0
LYD3_k127_568160_3 Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000009285 220.0
LYD3_k127_568160_4 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000000000002354 194.0
LYD3_k127_568160_5 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000641 151.0
LYD3_k127_568160_6 SWIB/MDM2 domain K03169 - 5.99.1.2 0.0000000000000000000000000000000004242 134.0
LYD3_k127_568160_7 YjbR - - - 0.0000000000000000000000000001628 118.0
LYD3_k127_568160_8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.00000000000000000000001911 102.0
LYD3_k127_568160_9 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.0000000001276 67.0
LYD3_k127_5700809_0 ABC transporter K18889 - - 2.866e-253 798.0
LYD3_k127_5700809_1 SMART PUR-alpha beta gamma DNA RNA-binding - - - 0.0000000000000000000000000000000000000000000000000000005321 196.0
LYD3_k127_5700809_3 Kelch motif - - - 0.000000000000000009654 98.0
LYD3_k127_5700809_4 Zinc metalloprotease (Elastase) - - - 0.00000000000000427 90.0
LYD3_k127_5700809_6 SprB repeat - - - 0.00000432 60.0
LYD3_k127_5700809_7 CoA binding domain K06929 - - 0.00001275 47.0
LYD3_k127_5728642_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 428.0
LYD3_k127_5728642_1 Two component transcriptional regulator, LytTR family K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000001529 229.0
LYD3_k127_5728642_2 exo-alpha-(2->6)-sialidase activity K01387 - 3.4.24.3 0.00000000000000000000000001194 126.0
LYD3_k127_5728642_3 Belongs to the glycosyl hydrolase 8 (cellulase D) family - - - 0.00000001023 68.0
LYD3_k127_5730169_0 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 579.0
LYD3_k127_5730169_1 PFAM Alanine dehydrogenase PNT K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 520.0
LYD3_k127_5730169_2 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 482.0
LYD3_k127_5730169_3 Acyl-transferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007526 388.0
LYD3_k127_5730169_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003904 308.0
LYD3_k127_5730169_5 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007459 271.0
LYD3_k127_5730169_6 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000000000000005983 214.0
LYD3_k127_5730169_7 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000001273 172.0
LYD3_k127_5731062_0 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 555.0
LYD3_k127_5731062_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 405.0
LYD3_k127_5731062_2 Nlp p60 protein K13694,K13695 - 3.4.17.13 0.00000000000000000000000000000000000000000000000003195 188.0
LYD3_k127_5731062_3 peptidase M1 - - - 0.0000000000000000000000000000000000000000000007102 169.0
LYD3_k127_5751374_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.0 1329.0
LYD3_k127_5777053_0 TonB-dependent receptor K02014 - - 1.983e-305 955.0
LYD3_k127_5777053_1 Isocitrate isopropylmalate dehydrogenase K00031,K00052 - 1.1.1.42,1.1.1.85 2.485e-278 859.0
LYD3_k127_5777053_10 protein affecting Mg2 Co2 transport K06195 - - 0.000000007438 57.0
LYD3_k127_5777053_2 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 7.367e-268 830.0
LYD3_k127_5777053_3 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 415.0
LYD3_k127_5777053_4 Periplasmic binding protein K02016 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 407.0
LYD3_k127_5777053_5 Haem-binding domain - - - 0.00000000000000000000000000000000000000000000000000000001007 202.0
LYD3_k127_5777053_6 Translation initiation factor SUI1 K03113 - - 0.000000000000000000000000000000000000000000000007222 173.0
LYD3_k127_5777053_7 Domain of unknown function (DUF4783) - - - 0.0000000000000000000000000000000001778 136.0
LYD3_k127_5777053_8 Divergent 4Fe-4S mono-cluster - - - 0.00000000000000000000000000001654 119.0
LYD3_k127_5777053_9 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000007121 98.0
LYD3_k127_5789224_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 2.666e-279 865.0
LYD3_k127_5789224_1 Molecular chaperone DnaK - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001018 263.0
LYD3_k127_5796463_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 602.0
LYD3_k127_5796463_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 406.0
LYD3_k127_5796463_2 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 329.0
LYD3_k127_5796463_3 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002252 276.0
LYD3_k127_5796463_4 pfam nudix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002252 276.0
LYD3_k127_5796463_5 PFAM Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000001291 237.0
LYD3_k127_5799372_0 Belongs to the thiolase family K00626,K07823 - 2.3.1.174,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003592 595.0
LYD3_k127_5799372_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 560.0
LYD3_k127_5799372_11 ATP-independent chaperone mediated protein folding - - - 0.00000000000000000003622 99.0
LYD3_k127_5799372_12 - - - - 0.0000008887 57.0
LYD3_k127_5799372_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003459 436.0
LYD3_k127_5799372_3 AhpC TSA family K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005054 376.0
LYD3_k127_5799372_4 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008746 353.0
LYD3_k127_5799372_5 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 327.0
LYD3_k127_5799372_6 Pseudouridine synthase K06179,K06180 - 5.4.99.23,5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006549 320.0
LYD3_k127_5799372_7 Low molecular weight phosphotyrosine protein phosphatase K01104 - 3.1.3.48 0.00000000000000000000000000000000000000000000000000000000000000000003745 236.0
LYD3_k127_5799372_8 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000002372 174.0
LYD3_k127_5799372_9 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000000000000000000000003057 134.0
LYD3_k127_5803827_0 Major Facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009759 478.0
LYD3_k127_5803827_1 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 429.0
LYD3_k127_5803827_2 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000000000000000000001881 180.0
LYD3_k127_5804842_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 7.982e-281 871.0
LYD3_k127_5804842_1 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 411.0
LYD3_k127_5804842_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000002079 133.0
LYD3_k127_5804842_3 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000005648 120.0
LYD3_k127_5820118_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 388.0
LYD3_k127_5820118_1 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 344.0
LYD3_k127_5820118_2 Peptidase family M20/M25/M40 K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 340.0
LYD3_k127_5820118_3 PFAM Peptidase family M20 M25 M40 K01436 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003542 252.0
LYD3_k127_5846831_0 PFAM GumN - - - 0.0 1056.0
LYD3_k127_5846831_1 Belongs to the ABC transporter superfamily K02031,K02032 - - 2.038e-248 778.0
LYD3_k127_5846831_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 4.791e-213 663.0
LYD3_k127_5846831_4 Protein of unknown function (DUF3570) - - - 0.0000000000000000000000003922 104.0
LYD3_k127_5869918_0 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 587.0
LYD3_k127_5869918_1 Belongs to the MurCDEF family K03802 - 6.3.2.29,6.3.2.30 0.000000003048 65.0
LYD3_k127_5879496_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 4.762e-228 718.0
LYD3_k127_5879496_1 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 411.0
LYD3_k127_5879496_2 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 362.0
LYD3_k127_5880829_0 Belongs to the aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 1.051e-218 688.0
LYD3_k127_5880829_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 559.0
LYD3_k127_5880829_2 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009081 526.0
LYD3_k127_5880829_3 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 364.0
LYD3_k127_5880829_4 Endoribonuclease L-PSP K15067 - 3.5.99.5 0.00000000000000000000000000000000000000000000000000006064 190.0
LYD3_k127_5880829_5 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.000000000000000000000000000000000000000003029 156.0
LYD3_k127_5880829_6 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.00000006579 54.0
LYD3_k127_5889562_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1114.0
LYD3_k127_5894435_0 hemolysin activation secretion protein - - - 7.131e-308 963.0
LYD3_k127_5894435_1 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 327.0
LYD3_k127_5901_0 Lipopolysaccharide-assembly - - - 0.0000000000000000000000000000000000000000000000000007867 189.0
LYD3_k127_5901_1 - - - - 0.00000000000000000000000000000000000000000000000004151 188.0
LYD3_k127_5901_2 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000000006991 119.0
LYD3_k127_5901_3 ATPase (AAA - - - 0.000000000000000000000001421 104.0
LYD3_k127_5907977_0 Domain of unknown function (DUF5117) - - - 1.2e-321 1000.0
LYD3_k127_5907977_1 PFAM peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.000000009765 68.0
LYD3_k127_597300_0 Protein of unknown function (DUF3570) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009597 518.0
LYD3_k127_597300_1 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005628 466.0
LYD3_k127_597300_2 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000001617 200.0
LYD3_k127_597300_3 Domain of unknown function (DUF4266) - - - 0.00000000000000000000005661 99.0
LYD3_k127_597300_4 Thioredoxin-like - - - 0.00005972 45.0
LYD3_k127_6005349_0 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 492.0
LYD3_k127_6005349_1 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 343.0
LYD3_k127_6026410_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 5.168e-287 887.0
LYD3_k127_6026410_1 Protein of unknown function (DUF1579) - - - 0.000000000000000000000000000000000000000000000000000000000000000001703 234.0
LYD3_k127_6026410_2 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000001016 207.0
LYD3_k127_6026410_3 COG2346, Truncated hemoglobins K06886 - - 0.00000000000000000000000000000000000000000001591 164.0
LYD3_k127_6026410_4 Glyoxalase-like domain K06996 - - 0.00000000000000000000000007692 109.0
LYD3_k127_6026410_5 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000001682 77.0
LYD3_k127_6027159_0 alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 364.0
LYD3_k127_6027159_1 PFAM Transglycosylase SLT domain K08307 - - 0.00000000000000000000000000000000000000000000000000000000000002321 225.0
LYD3_k127_6027159_2 Protocatechuate 3,4-dioxygenase beta subunit N terminal K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000002556 210.0
LYD3_k127_6027159_3 protocatechuate 3,4-dioxygenase activity K00449 - 1.13.11.3 0.0000000000000001068 89.0
LYD3_k127_6048921_0 TonB-dependent Receptor Plug Domain K02014 - - 6.183e-273 857.0
LYD3_k127_6048921_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 1.171e-231 722.0
LYD3_k127_6048921_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 442.0
LYD3_k127_6048921_3 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000000000000000000000000009272 177.0
LYD3_k127_6048921_4 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000000000000000000000000000000000002476 177.0
LYD3_k127_6048921_5 Rhodanese Homology Domain - - - 0.00000000000000639 75.0
LYD3_k127_6048997_0 PFAM PspC domain K03973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 593.0
LYD3_k127_6048997_1 Protein of unknown function (DUF3089) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 313.0
LYD3_k127_6048997_2 Universal stress protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001291 253.0
LYD3_k127_6048997_3 Transcriptional regulator K10947 - - 0.000000000000000000000000000000000000000000000000000000000005845 209.0
LYD3_k127_6048997_4 Pfam Biopolymer transport protein ExbD TolR - - - 0.000000000000000000000000000000000000167 147.0
LYD3_k127_6053384_0 domain, Protein - - - 2.98e-225 705.0
LYD3_k127_6053384_1 TonB-dependent receptor - - - 1.556e-205 649.0
LYD3_k127_6053384_2 MORN repeat variant - - - 0.0002588 50.0
LYD3_k127_6054830_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.0 1040.0
LYD3_k127_6054830_1 PFAM Polysulphide reductase, NrfD K00185 - - 3.77e-245 759.0
LYD3_k127_6054830_2 Quinol cytochrome c oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004759 544.0
LYD3_k127_6054830_3 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003963 487.0
LYD3_k127_6054830_4 Quinol cytochrome c oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003405 326.0
LYD3_k127_6054830_5 cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000009067 239.0
LYD3_k127_6054830_6 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0003365 45.0
LYD3_k127_6057594_0 Belongs to the GPI family K01810 - 5.3.1.9 9.06e-285 883.0
LYD3_k127_6057594_1 Threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007678 411.0
LYD3_k127_6062137_0 GTP-binding protein TypA K06207 - - 0.0 1054.0
LYD3_k127_6062137_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006635 414.0
LYD3_k127_6062137_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001984 275.0
LYD3_k127_6062137_3 pathogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002753 264.0
LYD3_k127_6062137_4 - - - - 0.00000000000000000000000000000003966 140.0
LYD3_k127_6062137_5 Chaperone of endosialidase - - - 0.000000000000000001305 90.0
LYD3_k127_6062137_6 COGs COG3279 Response regulator of the LytR AlgR family K02477 - - 0.00000000000001046 77.0
LYD3_k127_6070556_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01535 - 3.6.3.6 1.407e-217 694.0
LYD3_k127_6070556_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.000000000000000000000000000000001451 129.0
LYD3_k127_6070556_2 Domain of unknown function (DU1801) - - - 0.000000000000004764 81.0
LYD3_k127_6074151_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 422.0
LYD3_k127_6074151_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000003088 94.0
LYD3_k127_6076667_0 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007387 447.0
LYD3_k127_6076667_1 Domain of unknown function (DUF4136) - - - 0.000000000000000000000000000000000000000000000000000000000000000000003921 239.0
LYD3_k127_6076667_2 Protein of unknown function (DUF998) - - - 0.000000000000000000000000000000000000000000000000000000603 195.0
LYD3_k127_6076667_3 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000401 153.0
LYD3_k127_6078647_0 TIGRFAM dihydroorotase, multifunctional complex type K01464 - 3.5.2.2 2.524e-269 834.0
LYD3_k127_6078647_1 Aldehyde dehydrogenase family K00140,K22187 - 1.2.1.18,1.2.1.27 4.069e-267 828.0
LYD3_k127_6078647_10 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000447 222.0
LYD3_k127_6078647_11 PFAM AhpC TSA family - - - 0.000000000000000000000000000000000000000007174 158.0
LYD3_k127_6078647_2 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 4.225e-249 777.0
LYD3_k127_6078647_3 Aminotransferase class-III K15372 - 2.6.1.55 8.349e-244 758.0
LYD3_k127_6078647_4 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431,K12251 - 3.5.1.53,3.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 572.0
LYD3_k127_6078647_5 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266,K17722 - 1.3.1.1,1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 457.0
LYD3_k127_6078647_6 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 385.0
LYD3_k127_6078647_7 ribonuclease BN K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 310.0
LYD3_k127_6078647_8 Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA K00556 - 2.1.1.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 297.0
LYD3_k127_6078647_9 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001589 269.0
LYD3_k127_6080_0 Sortilin, neurotensin receptor 3, - - - 0.0 1453.0
LYD3_k127_6080_1 Acetyltransferase, gnat family K03829 - - 0.00000000000000000000000000000000000000001285 154.0
LYD3_k127_6091396_0 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 540.0
LYD3_k127_6091396_1 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 501.0
LYD3_k127_6091396_10 DinB superfamily - - - 0.0000000000000000000000000000000000000009576 153.0
LYD3_k127_6091396_11 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K16079,K21572 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000001877 140.0
LYD3_k127_6091396_12 23S rRNA-intervening sequence protein - - - 0.0000000000000000000001116 102.0
LYD3_k127_6091396_13 DNA polymerase X family - - - 0.0000009454 51.0
LYD3_k127_6091396_2 Mg2 transporter protein, CorA family protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 486.0
LYD3_k127_6091396_3 Bacterial membrane protein YfhO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 477.0
LYD3_k127_6091396_4 phosphorylase K00757 - 2.4.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 469.0
LYD3_k127_6091396_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 388.0
LYD3_k127_6091396_6 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006132 361.0
LYD3_k127_6091396_7 response to stress - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 347.0
LYD3_k127_6091396_8 pfam nudix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001353 243.0
LYD3_k127_6091396_9 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000001526 182.0
LYD3_k127_6104706_0 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000001197 173.0
LYD3_k127_6104706_1 TPR repeat - - - 0.00000000000000000000000000000000000000001317 177.0
LYD3_k127_6104706_2 CHASE2 domain - - - 0.0000000000000000000000000000001311 129.0
LYD3_k127_6104706_3 CHASE2 domain - - - 0.0000000000000000001144 99.0
LYD3_k127_6104706_4 - - - - 0.000005406 57.0
LYD3_k127_6109887_0 2-methylthioadenine synthetase K18707 - 2.8.4.5 7.071e-226 705.0
LYD3_k127_6109887_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 9.242e-221 691.0
LYD3_k127_6109887_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004133 314.0
LYD3_k127_6109887_3 Domain of unknown function (DUF4258) - - - 0.000000000000000000000000000123 120.0
LYD3_k127_6113817_0 COGs COG2185 Methylmalonyl-CoA mutase C-terminal domain subunit (cobalamin-binding) K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000005637 235.0
LYD3_k127_6113817_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000002987 169.0
LYD3_k127_6113817_2 Glyoxalase-like domain K07032 - - 0.000000000000000000000000000000000000000000007733 166.0
LYD3_k127_6113817_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000001958 98.0
LYD3_k127_6132757_0 Alpha-acetolactate decarboxylase K01575 - 4.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000008306 259.0
LYD3_k127_6132757_1 Domain of unknown function (DUF4421) - - - 0.0000000000000000000000000000000000000000000000000004364 197.0
LYD3_k127_6132757_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000396 179.0
LYD3_k127_6132757_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 0.0000000000000000001746 99.0
LYD3_k127_6147557_0 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 514.0
LYD3_k127_6147557_1 Outer membrane cobalamin receptor protein K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 457.0
LYD3_k127_6147557_2 PFAM MarC family integral membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009365 247.0
LYD3_k127_6147557_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976,K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000001347 239.0
LYD3_k127_6147557_4 cyclic nucleotide binding - - - 0.00000000000000000000000000000000000000000000000000000006113 201.0
LYD3_k127_6147557_5 Cupin domain - - - 0.0000000000000000004688 92.0
LYD3_k127_6147653_0 - - - - 0.00000000000000000000000000000000000000004333 160.0
LYD3_k127_6148798_0 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 1.029e-218 682.0
LYD3_k127_6148798_1 (GNAT) family K22441 - 2.3.1.57 0.000000000000000000000000000000000000000000000001371 179.0
LYD3_k127_6148798_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000002499 176.0
LYD3_k127_6148798_3 - - - - 0.000000000000000000000000000000000000004397 150.0
LYD3_k127_6148798_4 extracellular matrix structural constituent - - - 0.00000000000000000000000000000000005534 147.0
LYD3_k127_6148798_5 - - - - 0.00000000000000000000001041 108.0
LYD3_k127_6148798_6 phospholipase C K21302 GO:0003674,GO:0003824,GO:0003993,GO:0004438,GO:0004805,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0006139,GO:0006629,GO:0006644,GO:0006650,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006742,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009109,GO:0009117,GO:0009166,GO:0009987,GO:0016310,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019203,GO:0019362,GO:0019364,GO:0019438,GO:0019439,GO:0019637,GO:0030258,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0046434,GO:0046483,GO:0046486,GO:0046488,GO:0046496,GO:0046700,GO:0046834,GO:0046854,GO:0050189,GO:0050192,GO:0051186,GO:0051187,GO:0052744,GO:0052866,GO:0055086,GO:0071704,GO:0071944,GO:0072524,GO:0072526,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.3.64 0.0000003075 52.0
LYD3_k127_615000_0 PKD domain containing protein - - - 1.592e-231 734.0
LYD3_k127_615000_1 Protein of unknown function (DUF1211) - GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005267,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015318,GO:0015672,GO:0016043,GO:0022607,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0043933,GO:0044085,GO:0046873,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055085,GO:0065003,GO:0071804,GO:0071805,GO:0071840,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000001504 119.0
LYD3_k127_615000_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000001515 61.0
LYD3_k127_6154625_0 Dehydrogenase K00102,K00104 - 1.1.2.4,1.1.3.15 9.739e-218 683.0
LYD3_k127_6154625_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 554.0
LYD3_k127_6154625_2 TonB-dependent receptor K02014,K16087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 414.0
LYD3_k127_6154625_3 COG1705 Muramidase (flagellum-specific) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 355.0
LYD3_k127_6154625_4 O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009488 274.0
LYD3_k127_6154625_5 Cytokinin riboside 5'-monophosphate phosphoribohydrolase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000001657 234.0
LYD3_k127_6154625_6 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000009081 206.0
LYD3_k127_6154625_8 C-terminal domain of CHU protein family - - - 0.0000000000005237 68.0
LYD3_k127_6160467_0 hemolysin activation secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 520.0
LYD3_k127_6160467_1 membrane - - - 0.000000000000000000000000000000000000000000000001013 176.0
LYD3_k127_6160467_2 Winged helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000001962 174.0
LYD3_k127_6160467_3 - - - - 0.000000000000000000000000001618 112.0
LYD3_k127_6160467_4 ubiquinone biosynthetic process - - - 0.000000000004093 72.0
LYD3_k127_6163859_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.722e-260 805.0
LYD3_k127_6163859_1 PFAM Tetratricopeptide repeat - - - 1.24e-203 640.0
LYD3_k127_6163859_2 PFAM (2R)-phospho-3-sulfolactate synthase ComA K08097 - 4.4.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004875 463.0
LYD3_k127_6163859_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 323.0
LYD3_k127_6163859_4 PFAM Shikimate dehydrogenase substrate binding K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 312.0
LYD3_k127_6163859_5 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000000000000000008097 208.0
LYD3_k127_6164227_0 COGs COG0491 Zn-dependent hydrolase including glyoxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 560.0
LYD3_k127_6164227_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 323.0
LYD3_k127_6164227_2 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000000002991 166.0
LYD3_k127_6164227_3 Carbohydrate family 9 binding domain-like - - - 0.000000001611 63.0
LYD3_k127_6165463_0 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005773 503.0
LYD3_k127_6165463_1 COGs COG1914 Mn2 and Fe2 transporter of the NRAMP family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003876 490.0
LYD3_k127_6165463_2 PFAM Allophanate hydrolase subunit 2 K06350 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 324.0
LYD3_k127_6165463_3 Belongs to the UPF0271 (lamB) family K07160 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 299.0
LYD3_k127_6165463_4 PFAM Allophanate hydrolase subunit 1 K06351 - - 0.00000000000000000000000000000000000000000000000000000000000000001087 233.0
LYD3_k127_6165602_0 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 443.0
LYD3_k127_6165602_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000001726 86.0
LYD3_k127_61798_0 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008412 339.0
LYD3_k127_61798_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002592 279.0
LYD3_k127_61798_2 endonuclease containing a URI domain K07461 - - 0.00000000000000000000000000001725 120.0
LYD3_k127_6179890_0 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 413.0
LYD3_k127_6179890_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000492 93.0
LYD3_k127_6179890_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000001284 72.0
LYD3_k127_61947_0 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 485.0
LYD3_k127_61947_1 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 287.0
LYD3_k127_61947_2 Pyridoxamine 5'-phosphate oxidase like - - - 0.00000000000000000000000000000002707 133.0
LYD3_k127_6196269_0 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 349.0
LYD3_k127_6196269_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 343.0
LYD3_k127_6196269_2 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01835 - 5.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000105 235.0
LYD3_k127_6196269_3 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000004912 226.0
LYD3_k127_6196269_4 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000004945 180.0
LYD3_k127_6196269_5 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000000000000000000001985 169.0
LYD3_k127_6196785_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 514.0
LYD3_k127_6196785_1 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 495.0
LYD3_k127_6196785_2 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 418.0
LYD3_k127_6196785_3 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001132 274.0
LYD3_k127_6196785_4 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000000000000000000000000001455 244.0
LYD3_k127_6196785_5 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.00000000000000000000000000000000000000000000000000000000000000000003856 232.0
LYD3_k127_6196785_6 Type IV pilus biogenesis stability protein PilW - - - 0.000000000000000000000000000000000000000001067 158.0
LYD3_k127_6199483_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 1.713e-211 669.0
LYD3_k127_6199483_1 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 515.0
LYD3_k127_6199483_2 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002147 519.0
LYD3_k127_6199483_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 434.0
LYD3_k127_6199483_4 endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 407.0
LYD3_k127_6199483_5 ABC transporter K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 359.0
LYD3_k127_6199483_6 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004947 301.0
LYD3_k127_6199483_7 Rhomboid family K09650 - 3.4.21.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000962 258.0
LYD3_k127_6211112_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 2.381e-230 718.0
LYD3_k127_6211112_1 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 389.0
LYD3_k127_6211112_2 Domain of unknown function (DUF4290) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 340.0
LYD3_k127_6211112_3 TIGRFAM Gliding motility-associated protein, GldC - - - 0.000000000000000000000000000000000000000002698 157.0
LYD3_k127_6211112_4 PFAM Yqey-like protein K09117 - - 0.00005644 45.0
LYD3_k127_6211526_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0 1308.0
LYD3_k127_6211526_1 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 427.0
LYD3_k127_6211526_2 esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 319.0
LYD3_k127_6211526_4 Collagen triple helix repeat - - - 0.0000003527 63.0
LYD3_k127_6211526_5 Hep Hag repeat protein - - - 0.000001888 60.0
LYD3_k127_6211526_6 surface antigen - - - 0.000001888 60.0
LYD3_k127_6211526_7 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM - - - 0.0008684 44.0
LYD3_k127_6214293_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.0 1408.0
LYD3_k127_6214293_1 40-residue YVTN family beta-propeller repeat - - - 0.0 1188.0
LYD3_k127_6214293_2 TIGRFAM ComEC Rec2-related protein K02238 - - 2.884e-197 636.0
LYD3_k127_6214293_3 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 366.0
LYD3_k127_6214293_4 DinB family - - - 0.0000000000000000000000552 106.0
LYD3_k127_6225209_0 COGs COG1033 exporter of the RND superfamily protein K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009575 474.0
LYD3_k127_6225209_1 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 370.0
LYD3_k127_6225209_10 Cytochrome c - - - 0.0000000000000000724 85.0
LYD3_k127_6225209_11 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000002818 69.0
LYD3_k127_6225209_12 YceI-like domain - - - 0.000000001038 70.0
LYD3_k127_6225209_13 Protein of unknown function (DUF1549) - - - 0.000007388 58.0
LYD3_k127_6225209_14 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00007838 54.0
LYD3_k127_6225209_2 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 366.0
LYD3_k127_6225209_3 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 323.0
LYD3_k127_6225209_4 Asparaginase, N-terminal K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003334 278.0
LYD3_k127_6225209_5 Penicillin amidase K07116 - 3.5.1.97 0.00000000000000000000000000000000000000000000000000000000000000000000000046 249.0
LYD3_k127_6225209_6 Peptidase family U32 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001521 256.0
LYD3_k127_6225209_7 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000853 243.0
LYD3_k127_6225209_8 Penicillin amidase K07116 - 3.5.1.97 0.0000000000000000000000000000000000000000000000000000000000000008819 225.0
LYD3_k127_6225209_9 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K07804 - - 0.0000000000000000000000000000003796 134.0
LYD3_k127_6237406_0 membrane protein involved in D-alanine export - - - 3.074e-195 622.0
LYD3_k127_6237406_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009434 296.0
LYD3_k127_6237406_2 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006413 287.0
LYD3_k127_6237406_3 Domain of unknown function (4846) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000333 248.0
LYD3_k127_6237406_4 PFAM Phosphoesterase, HXTX - - - 0.00000000000000000000000000000000005153 140.0
LYD3_k127_6237406_5 Las17-binding protein actin regulator - - - 0.00000000000000000000000000003269 117.0
LYD3_k127_6242996_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000000007702 194.0
LYD3_k127_6242996_1 GxxExxY protein - - - 0.0000000000000000001297 89.0
LYD3_k127_6242996_2 PD-(D/E)XK nuclease superfamily - - - 0.00000000007276 64.0
LYD3_k127_6272483_0 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 7.21e-225 700.0
LYD3_k127_6272483_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008109 310.0
LYD3_k127_6272483_2 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003367 255.0
LYD3_k127_6272483_4 L,D-transpeptidase catalytic domain - - - 0.000000000000000000008414 95.0
LYD3_k127_6272483_5 - - - - 0.0000000000000000007611 94.0
LYD3_k127_6282073_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1154.0
LYD3_k127_6287065_0 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 433.0
LYD3_k127_6287065_1 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 355.0
LYD3_k127_6287065_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002124 246.0
LYD3_k127_6287065_3 SnoaL-like domain - - - 0.0000000000000000000000000000000000000000000000000002298 190.0
LYD3_k127_6294258_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 6.842e-294 906.0
LYD3_k127_6294258_1 - - - - 0.0000000000000000000000000000000001106 134.0
LYD3_k127_6294258_2 Methyltransferase domain - - - 0.00000000000000000000000000000003387 128.0
LYD3_k127_6294258_3 Methyltransferase domain - - - 0.000000000000000000001935 94.0
LYD3_k127_6294258_4 phosphohydrolase K06885 - - 0.000000000000000008231 84.0
LYD3_k127_6310285_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 454.0
LYD3_k127_6310285_1 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000801 353.0
LYD3_k127_6310285_2 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 286.0
LYD3_k127_6310285_3 cytochrome complex assembly K02198,K02200,K04016,K04017,K04018 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0098552,GO:0098567,GO:1901564 - 0.0000000000000000000000000000000000000000006843 169.0
LYD3_k127_6320098_0 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 336.0
LYD3_k127_6320098_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 286.0
LYD3_k127_6320098_2 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 0.0000000000001187 70.0
LYD3_k127_632423_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008331 610.0
LYD3_k127_632423_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000002836 227.0
LYD3_k127_632423_2 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000002063 194.0
LYD3_k127_6324991_0 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003134 249.0
LYD3_k127_6324991_1 COGs COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000005495 150.0
LYD3_k127_6329031_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007672 589.0
LYD3_k127_6329031_1 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 301.0
LYD3_k127_6329031_2 transmembrane transporter activity K08166,K08170 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000001501 203.0
LYD3_k127_6329031_3 ligase activity - - - 0.000000000000000000000000000000000000000000002823 172.0
LYD3_k127_6329031_4 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000003395 153.0
LYD3_k127_6349682_0 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 585.0
LYD3_k127_6349682_1 - - - - 0.000000000000000000000000000000000000000000002596 171.0
LYD3_k127_6362938_0 DHHW protein - - - 0.0000000000000000000000000000000000000000000000000000000000000851 219.0
LYD3_k127_6362938_1 DHHW protein - - - 0.000000000000000000000000000000000000000000000004021 183.0
LYD3_k127_6370585_0 acetyl-CoA hydrolase - - - 3.062e-218 683.0
LYD3_k127_6370585_1 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003687 442.0
LYD3_k127_6370585_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000007506 227.0
LYD3_k127_6385705_0 COG2373 Large extracellular alpha-helical protein - - - 5.14e-303 947.0
LYD3_k127_6399682_0 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 1.582e-202 638.0
LYD3_k127_6399682_1 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003342 453.0
LYD3_k127_6399682_10 - - - - 0.0000000000000001112 89.0
LYD3_k127_6399682_11 cellulase activity K01127 - 3.1.4.50 0.0000000001227 72.0
LYD3_k127_6399682_13 - - - - 0.00000002205 65.0
LYD3_k127_6399682_2 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 410.0
LYD3_k127_6399682_3 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 374.0
LYD3_k127_6399682_4 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 366.0
LYD3_k127_6399682_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 362.0
LYD3_k127_6399682_6 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005744 362.0
LYD3_k127_6399682_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000000000000007877 250.0
LYD3_k127_6399682_8 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000001379 230.0
LYD3_k127_6399682_9 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family K02503 - - 0.0000000000000000000000000000000000000000000000000000000008072 204.0
LYD3_k127_6402711_0 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 1.275e-216 679.0
LYD3_k127_6402711_1 Belongs to the ATCase OTCase family K09065,K13043 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.11,2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000853 546.0
LYD3_k127_6402711_2 PFAM Peptidase family M20 M25 M40 K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 540.0
LYD3_k127_6402711_3 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 400.0
LYD3_k127_6402711_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 327.0
LYD3_k127_6402711_5 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005134 274.0
LYD3_k127_6402711_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000287 205.0
LYD3_k127_6402711_7 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000002642 140.0
LYD3_k127_6417011_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 582.0
LYD3_k127_6417011_1 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000000000000000001068 183.0
LYD3_k127_6426259_0 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 430.0
LYD3_k127_6426259_1 peptidase S1 and S6 chymotrypsin Hap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003638 396.0
LYD3_k127_6426259_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005922 346.0
LYD3_k127_6426259_3 1-aminocyclopropane-1-carboxylate deaminase K01505 - 3.5.99.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002807 286.0
LYD3_k127_6426259_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000006688 252.0
LYD3_k127_6426259_5 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000005682 216.0
LYD3_k127_6445831_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 556.0
LYD3_k127_6445831_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 522.0
LYD3_k127_6445831_2 phosphohydrolase K06885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008052 436.0
LYD3_k127_6445831_3 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002499 369.0
LYD3_k127_6451449_0 Belongs to the HpcH HpaI aldolase family - - - 4.51e-226 707.0
LYD3_k127_6451449_1 Amidohydrolase family K01466 - 3.5.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 482.0
LYD3_k127_6451449_2 Allantoicase repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 439.0
LYD3_k127_6451449_3 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003974 279.0
LYD3_k127_6451449_4 TIGRFAM OHCU decarboxylase K16840 - 4.1.1.97 0.00000000000000000000000000000000000000000000000000000001052 202.0
LYD3_k127_6451449_5 Transthyretin K07127 - 3.5.2.17 0.0000000000000000000000000000000000000006992 151.0
LYD3_k127_6470544_0 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 383.0
LYD3_k127_6470544_1 Protein of unknown function (DUF983) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001578 232.0
LYD3_k127_6470544_2 Excinuclease ABC subunit C K07461 - - 0.000000000000000001465 89.0
LYD3_k127_6470544_3 TIGRFAM hydrolase, TatD family K03424 - - 0.0000000008884 59.0
LYD3_k127_6470544_4 - - - - 0.000000002194 59.0
LYD3_k127_6471629_0 arsenical-resistance protein K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006138 586.0
LYD3_k127_6471629_1 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 411.0
LYD3_k127_6500035_0 Flavin-binding monooxygenase-like K11816 - 1.14.13.168 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 417.0
LYD3_k127_6500035_1 Hydrolase, alpha beta domain protein - - - 0.000000000000000000000007006 103.0
LYD3_k127_6500035_2 YceI-like domain - - - 0.0000000000000000000164 106.0
LYD3_k127_6500035_3 - - - - 0.00000000000000000002718 99.0
LYD3_k127_6500035_4 Domain of unknown function (DUF4476) - - - 0.000008507 58.0
LYD3_k127_6501470_0 Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 458.0
LYD3_k127_6501470_1 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 358.0
LYD3_k127_6501470_2 GSCFA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 353.0
LYD3_k127_6501470_3 PFAM Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000008357 211.0
LYD3_k127_6504684_0 aconitate hydratase K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 388.0
LYD3_k127_6504684_1 Membrane - - - 0.00000000000000000000000000000001793 131.0
LYD3_k127_6504684_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000001158 116.0
LYD3_k127_650807_0 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 293.0
LYD3_k127_650807_1 TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000001258 236.0
LYD3_k127_650807_2 Fasciclin domain - - - 0.00000000000000000000000000000001412 130.0
LYD3_k127_650807_3 RNA recognition motif - - - 0.0000000000000000000000000132 112.0
LYD3_k127_650807_4 Flavin-binding monooxygenase-like K11816 - 1.14.13.168 0.000000000002993 67.0
LYD3_k127_6515887_0 May be involved in recombinational repair of damaged DNA K03631 - - 4.829e-223 706.0
LYD3_k127_6515887_1 Zinc ribbon domain K07164 - - 0.000000000000000000000000000000000000000000000000000000000009117 209.0
LYD3_k127_6515887_3 - - - - 0.000002079 55.0
LYD3_k127_6535406_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005875 366.0
LYD3_k127_6535406_1 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000004826 213.0
LYD3_k127_6535406_2 PFAM NAD dependent epimerase dehydratase family K07071 - - 0.0000000000000000000000000000000000000003095 154.0
LYD3_k127_6542563_0 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 348.0
LYD3_k127_6542563_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 293.0
LYD3_k127_6542563_2 Nucleotidyl transferase K15669 - 2.7.7.71 0.000000000000000000000000000000000000009999 147.0
LYD3_k127_6547703_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 573.0
LYD3_k127_6547703_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 492.0
LYD3_k127_6547703_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000939 471.0
LYD3_k127_6547703_3 Nitronate monooxygenase K02371 - 1.3.1.9 0.00000000000000000000000000000000000000000001344 162.0
LYD3_k127_6547703_4 Domain of unknown function (DUF4293) - - - 0.00000000000000000000007819 102.0
LYD3_k127_6560855_0 Endoribonuclease that initiates mRNA decay K18682 - - 2.239e-275 853.0
LYD3_k127_6560855_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.461e-203 644.0
LYD3_k127_6560855_2 PFAM Transglycosylase SLT domain K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 332.0
LYD3_k127_6560855_3 PFAM chorismate binding K01665,K03342 - 2.6.1.85,4.1.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 282.0
LYD3_k127_6560855_4 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001641 197.0
LYD3_k127_6560855_5 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000000000000000000000002802 128.0
LYD3_k127_6560855_6 ketosteroid isomerase - - - 0.000000000000000000000000007069 117.0
LYD3_k127_6560855_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000002377 97.0
LYD3_k127_6563545_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K17686 - 3.6.3.54 5.711e-294 917.0
LYD3_k127_6563545_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 2.489e-269 843.0
LYD3_k127_6563545_2 Bacterial protein of unknown function (DUF853) K06915 - - 1.313e-257 801.0
LYD3_k127_6563545_3 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.00000000000000000000000000000000000000001265 156.0
LYD3_k127_6563545_4 - - - - 0.0002938 48.0
LYD3_k127_657084_0 TonB-dependent receptor plug domain - - - 8.446e-285 905.0
LYD3_k127_657084_1 Serine dehydratase K01752 - 4.3.1.17 7.446e-228 714.0
LYD3_k127_657084_2 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006926 520.0
LYD3_k127_657084_3 PFAM 3-carboxy-cis,cis-muconate lactonizing enzyme K07404 - 3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 353.0
LYD3_k127_657084_4 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 308.0
LYD3_k127_657084_5 Peptidyl-prolyl cis-trans K03772 - 5.2.1.8 0.0000000000000000129 83.0
LYD3_k127_657084_6 COGs COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1 K03772 - 5.2.1.8 0.00002074 47.0
LYD3_k127_6593553_0 TamB, inner membrane protein subunit of TAM complex - - - 4.351e-288 910.0
LYD3_k127_6593553_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007745 513.0
LYD3_k127_6599065_0 PFAM glucose-methanol-choline oxidoreductase - - - 4.576e-317 975.0
LYD3_k127_6599065_1 Oxidoreductase - - - 7.071e-269 832.0
LYD3_k127_6599065_2 (twin-arginine translocation) pathway signal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009914 269.0
LYD3_k127_6599065_3 Hydroxypyruvate isomerase K01816 - 5.3.1.22 0.000000000211 61.0
LYD3_k127_6610565_0 potassium channel beta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005153 543.0
LYD3_k127_6610565_1 KR domain K13775 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 411.0
LYD3_k127_6610565_2 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 405.0
LYD3_k127_6610565_3 Peptidase S16 lon domain protein K01338,K07157 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004849 295.0
LYD3_k127_6610565_4 involved in cell wall biogenesis K12984 - - 0.0000000000000000000000000000000000000000000000000000000008576 210.0
LYD3_k127_6610565_5 Lipopolysaccharide-assembly, LptC-related - - - 0.0000000000000000000000000000000000000000000000000000003344 200.0
LYD3_k127_6610565_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000003665 184.0
LYD3_k127_6610565_7 O-antigen ligase like membrane protein K02847 - - 0.00000000000614 72.0
LYD3_k127_6610934_0 Belongs to the arginase family K01479 - 3.5.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 561.0
LYD3_k127_6622984_0 GH3 auxin-responsive promoter - - - 1.031e-260 811.0
LYD3_k127_6625500_0 hydrolase, family 3 - - - 1.451e-247 779.0
LYD3_k127_6628660_0 TIGRFAM ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01537 - 3.6.3.8 0.0 1219.0
LYD3_k127_6628660_1 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 428.0
LYD3_k127_6628660_2 MazG nucleotide pyrophosphohydrolase domain - - - 0.000000000000000004762 87.0
LYD3_k127_6628660_3 - - - - 0.00000002883 59.0
LYD3_k127_6630399_0 LmbE family - - - 2.597e-292 918.0
LYD3_k127_6630399_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 2.688e-232 732.0
LYD3_k127_6630399_2 von Willebrand factor, type A K07114 - - 1.84e-224 712.0
LYD3_k127_6630399_3 Large extracellular alpha-helical protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006023 419.0
LYD3_k127_6630399_4 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008721 368.0
LYD3_k127_6630399_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003141 267.0
LYD3_k127_6630399_6 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000000000000000000000001702 137.0
LYD3_k127_6630399_7 transport - - - 0.0000000000000000000000000001978 120.0
LYD3_k127_6630399_8 PFAM Zinc carboxypeptidase - - - 0.000000000000000000000001003 104.0
LYD3_k127_6630769_0 membrane protein involved in aromatic hydrocarbon degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 299.0
LYD3_k127_6630769_1 - - - - 0.000000000000000000002459 102.0
LYD3_k127_6634067_0 Deoxyhypusine synthase K00809 - 2.5.1.46 3.705e-202 632.0
LYD3_k127_6634067_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 393.0
LYD3_k127_6634067_2 Transporter associated domain K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009112 354.0
LYD3_k127_6634067_3 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 331.0
LYD3_k127_6634067_4 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008352 312.0
LYD3_k127_6634067_5 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000000000000003228 231.0
LYD3_k127_6634067_6 Pkd domain containing protein - - - 0.000000000000000000000003373 120.0
LYD3_k127_6634067_7 - - - - 0.00000000003963 70.0
LYD3_k127_6634067_8 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 0.00000004533 55.0
LYD3_k127_6634067_9 metallopeptidase activity - - - 0.0000001281 65.0
LYD3_k127_6634658_0 TIGRFAM formate dehydrogenase, alpha subunit, archaeal-type K00123,K18332 - 1.12.1.3,1.17.1.9 0.0 1416.0
LYD3_k127_6634658_1 TIGRFAM formate dehydrogenase, alpha subunit, archaeal-type K00123,K18332 - 1.12.1.3,1.17.1.9 0.000003635 50.0
LYD3_k127_6639906_0 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003148 360.0
LYD3_k127_6639906_1 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000216 123.0
LYD3_k127_6639906_2 Transglutaminase-like superfamily - - - 0.00000000000005456 74.0
LYD3_k127_6643179_0 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 3.518e-201 629.0
LYD3_k127_6643219_0 Hydroxymethylglutaryl-CoA lyase K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 402.0
LYD3_k127_6643219_1 GSCFA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003323 389.0
LYD3_k127_6643219_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218,K03437 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008982 365.0
LYD3_k127_6643219_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 280.0
LYD3_k127_6643219_4 - - - - 0.0000000006695 65.0
LYD3_k127_6652583_0 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 491.0
LYD3_k127_6652583_1 Sigma-70 region 2 - - - 0.00000000000000000000000000000000000000000000000000003811 195.0
LYD3_k127_6652583_3 HSCB C-terminal oligomerisation domain K04082 - - 0.00000000000000000000000000000000000000000000000158 178.0
LYD3_k127_6652583_4 AntiSigma factor - - - 0.000000000000003721 81.0
LYD3_k127_666753_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1249.0
LYD3_k127_666753_1 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 401.0
LYD3_k127_666753_2 methyltransferase - - - 0.00000000000000000000000000000000000000000002477 170.0
LYD3_k127_666753_3 COG2755 Lysophospholipase L1 and related - - - 0.00000000000000000000000000000000008341 136.0
LYD3_k127_666753_4 Oxidoreductase - - - 0.00000000000000000000000000001856 117.0
LYD3_k127_66799_0 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K13482 - 1.17.1.4 5.809e-319 987.0
LYD3_k127_66799_1 PFAM 2Fe-2S -binding K13481 - 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 572.0
LYD3_k127_66799_2 alcohol dehydrogenase K13979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 532.0
LYD3_k127_66799_3 - - - - 0.00000000000000000000000000000000000002239 158.0
LYD3_k127_66799_4 PFAM Pregnancy-associated plasma protein-A - - - 0.00000000000000000000000007184 123.0
LYD3_k127_66799_5 NTPase K06928 - 3.6.1.15 0.00000000000000000000003277 105.0
LYD3_k127_66799_6 COG3209 Rhs family protein - - - 0.0000008869 61.0
LYD3_k127_670008_0 Cation efflux family K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 388.0
LYD3_k127_670008_1 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 338.0
LYD3_k127_670008_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000001692 207.0
LYD3_k127_670008_3 COGs COG1914 Mn2 and Fe2 transporter of the NRAMP family - - - 0.000000000001163 68.0
LYD3_k127_670860_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.966e-243 759.0
LYD3_k127_670860_1 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 1.18e-233 734.0
LYD3_k127_670860_2 PFAM Major Facilitator Superfamily - - - 6.306e-204 641.0
LYD3_k127_670860_3 AP endonuclease - - - 1.977e-195 614.0
LYD3_k127_670860_4 Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 586.0
LYD3_k127_670860_5 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 542.0
LYD3_k127_670860_6 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 301.0
LYD3_k127_670860_7 Cytochrome c, class I K08738 - - 0.000000000000000000000000000000000000000000004313 166.0
LYD3_k127_670860_8 Protein of unknown function (DUF1761) - - - 0.000000000000000007379 89.0
LYD3_k127_673747_0 apolipoprotein N-acyltransferase K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 444.0
LYD3_k127_673747_1 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000001531 218.0
LYD3_k127_67798_0 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
LYD3_k127_67798_1 Raf kinase inhibitor-like protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002135 252.0
LYD3_k127_67798_2 Na+/Pi-cotransporter K03324 - - 0.0000000000000000000000000000000000000000000000000000001702 202.0
LYD3_k127_67798_3 - - - - 0.000008454 53.0
LYD3_k127_678853_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 1.172e-288 900.0
LYD3_k127_678853_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 478.0
LYD3_k127_678853_2 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003908 341.0
LYD3_k127_678853_3 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000008144 167.0
LYD3_k127_678853_4 Protein of unknown function (DUF2795) - - - 0.00000000000000000000000000000000000000001585 153.0
LYD3_k127_679078_0 amino acid K03294 - - 8.046e-204 645.0
LYD3_k127_679078_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 566.0
LYD3_k127_679078_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009802 412.0
LYD3_k127_679078_3 Outer membrane chaperone Skp K06142 - - 0.0000000000000000000000000000007321 128.0
LYD3_k127_679933_0 GH3 auxin-responsive promoter - - - 1.379e-262 815.0
LYD3_k127_679933_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 448.0
LYD3_k127_679933_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007919 270.0
LYD3_k127_679933_3 Lysine exporter protein (Lyse ygga) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001842 253.0
LYD3_k127_687056_0 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 536.0
LYD3_k127_687056_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003319 286.0
LYD3_k127_687056_2 outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000003117 168.0
LYD3_k127_687272_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 572.0
LYD3_k127_687272_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 446.0
LYD3_k127_687272_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 321.0
LYD3_k127_687272_3 PFAM Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 285.0
LYD3_k127_687272_4 PFAM Chaperonin Cpn10 - - - 0.00000000000000000000000000000000000000000000000000000000002268 208.0
LYD3_k127_687272_5 - - - - 0.0000000000000000000006281 102.0
LYD3_k127_688107_0 Belongs to the GarS family - - - 2.664e-199 635.0
LYD3_k127_688107_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003253 500.0
LYD3_k127_688107_2 response regulator, receiver K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000586 357.0
LYD3_k127_688107_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 319.0
LYD3_k127_688107_4 uracil phosphoribosyltransferase K00761 - 2.4.2.9 0.0001393 44.0
LYD3_k127_688477_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 435.0
LYD3_k127_688477_2 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000005617 77.0
LYD3_k127_688477_3 transcriptional regulator - - - 0.000000000005376 66.0
LYD3_k127_690079_0 Esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000512 446.0
LYD3_k127_690079_1 protein required for cytochrome oxidase assembly K02259 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 379.0
LYD3_k127_690079_2 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005236 370.0
LYD3_k127_690079_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 316.0
LYD3_k127_690079_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003112 277.0
LYD3_k127_691388_0 Carboxypeptidase regulatory-like domain - - - 0.0 1085.0
LYD3_k127_693769_0 alpha-2-macroglobulin domain protein K06894 - - 0.0 2371.0
LYD3_k127_693769_1 Penicillin-binding Protein K05367 - 2.4.1.129 0.0 1165.0
LYD3_k127_693769_2 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 1.643e-263 820.0
LYD3_k127_693769_3 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 604.0
LYD3_k127_693769_4 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000000000000000005738 151.0
LYD3_k127_693803_0 Protein of unknown function (DUF2723) - - - 0.0 1114.0
LYD3_k127_693803_1 von Willebrand factor, type A - - - 5.996e-216 673.0
LYD3_k127_693803_2 PD-(D/E)XK nuclease superfamily - - - 0.000000005574 58.0
LYD3_k127_700444_0 PFAM Scaffold protein Nfu NifU N terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 358.0
LYD3_k127_700444_1 Phospholipid methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003673 272.0
LYD3_k127_700444_2 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K13566 - 3.5.1.3 0.00000000000000000000000000000000000000000007391 163.0
LYD3_k127_70544_0 PhoD-like phosphatase K01113 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 342.0
LYD3_k127_70544_1 Collagen triple helix repeat (20 copies) - - - 0.0000000000000000001388 97.0
LYD3_k127_70544_2 Molecular chaperone DnaK - - - 0.0000000000006381 68.0
LYD3_k127_70544_3 Outer membrane protein beta-barrel domain - - - 0.0000004233 61.0
LYD3_k127_711791_0 NAD(P)H-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 431.0
LYD3_k127_711791_1 - - - - 0.00000000000000000000000002217 115.0
LYD3_k127_711791_2 Glycosyl transferase, family 2 - - - 0.00000000000000000000002371 107.0
LYD3_k127_716171_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 530.0
LYD3_k127_716171_1 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 366.0
LYD3_k127_716171_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 293.0
LYD3_k127_716171_3 - - - - 0.00000000000000000000000000000000000000000000000000000009513 201.0
LYD3_k127_716171_4 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000000000000000002646 180.0
LYD3_k127_716171_5 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000000000000000000000000000005978 178.0
LYD3_k127_716171_6 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.000000000000000000000341 110.0
LYD3_k127_716171_7 Tricorn protease C1 domain - - - 0.0000004342 53.0
LYD3_k127_717741_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - - - 4.167e-288 891.0
LYD3_k127_717741_1 TIGRFAM mannose-6-phosphate isomerase, class I K01809 - 5.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 455.0
LYD3_k127_717741_2 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 341.0
LYD3_k127_717741_3 Chaperone of endosialidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005394 296.0
LYD3_k127_717741_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000004669 231.0
LYD3_k127_717741_5 - - - - 0.0000000000000000000000000000001129 130.0
LYD3_k127_717741_6 Belongs to the UPF0102 family K07460 - - 0.000000000000000000004576 94.0
LYD3_k127_717741_7 Protein of unknown function (DUF1328) - - - 0.0000000000000000403 82.0
LYD3_k127_723209_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 7.039e-232 737.0
LYD3_k127_723209_1 Cell shape determining protein MreB Mrl K03569 - - 2.119e-209 652.0
LYD3_k127_723209_2 Belongs to the SEDS family K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 599.0
LYD3_k127_723209_3 Metallo-beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008898 363.0
LYD3_k127_723209_4 shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008218 273.0
LYD3_k127_723209_5 rod shape-determining protein MreD - - - 0.000000000000000000000000000000000000000000000000000000000000001089 222.0
LYD3_k127_723209_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000008583 175.0
LYD3_k127_723209_7 - - - - 0.0000000000000000000000000002366 124.0
LYD3_k127_723209_8 MFS_1 like family - - - 0.000000000000000000000002375 103.0
LYD3_k127_723209_9 - - - - 0.00002396 52.0
LYD3_k127_733251_0 TonB dependent receptor - - - 5.05e-204 640.0
LYD3_k127_733251_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006411 398.0
LYD3_k127_733251_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000001381 134.0
LYD3_k127_739046_0 OPT oligopeptide transporter protein - - - 2.23e-294 915.0
LYD3_k127_739046_1 POT family K03305 - - 8.333e-235 741.0
LYD3_k127_739046_2 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 582.0
LYD3_k127_739046_3 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 472.0
LYD3_k127_739046_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 439.0
LYD3_k127_739046_5 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 330.0
LYD3_k127_739046_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000634 209.0
LYD3_k127_739046_7 Cell shape determining protein MreB Mrl K03569 - - 0.00000000000002828 72.0
LYD3_k127_762574_0 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000002945 191.0
LYD3_k127_762574_1 OmpA family - - - 0.00000000000000000000000000000000000000000006792 171.0
LYD3_k127_762574_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000001768 157.0
LYD3_k127_762946_0 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000387 274.0
LYD3_k127_762946_1 S1 P1 Nuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002049 248.0
LYD3_k127_762946_2 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000002813 213.0
LYD3_k127_762946_3 PFAM Outer membrane efflux protein - - - 0.00000000000000000000326 96.0
LYD3_k127_773276_0 Sortilin, neurotensin receptor 3, - - - 0.0 1178.0
LYD3_k127_773276_1 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.0 1068.0
LYD3_k127_773276_2 Belongs to the peptidase M16 family K07263 - - 2.086e-291 922.0
LYD3_k127_773276_3 COG1024 Enoyl-CoA hydratase carnithine racemase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 353.0
LYD3_k127_773276_4 methionine sulfoxide reductase K07305,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001908 280.0
LYD3_k127_773276_5 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001271 258.0
LYD3_k127_773276_6 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.00000000000000000000000000000000000000000000000000000000000004127 227.0
LYD3_k127_773276_7 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000004222 106.0
LYD3_k127_773276_8 Protein of unknown function (DUF1569) - - - 0.000000000000000000002553 99.0
LYD3_k127_773631_0 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 2.766e-236 737.0
LYD3_k127_773631_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009062 601.0
LYD3_k127_773631_10 - - - - 0.0000272 47.0
LYD3_k127_773631_2 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 393.0
LYD3_k127_773631_3 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005186 355.0
LYD3_k127_773631_4 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 288.0
LYD3_k127_773631_5 YceI-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002736 280.0
LYD3_k127_773631_6 Domain of unknown function (DUF4136) - - - 0.000000000000000000000000000000000000000000000002012 179.0
LYD3_k127_773631_7 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000001424 145.0
LYD3_k127_773631_8 Protein conserved in bacteria K09935 - - 0.000000000000000000000000000016 126.0
LYD3_k127_773631_9 Domain of unknown function (DUF4442) - - - 0.00000000000003598 73.0
LYD3_k127_781154_0 Fibronectin type III-like domain K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005426 605.0
LYD3_k127_781154_1 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005128 481.0
LYD3_k127_781154_10 surface antigen - - - 0.00000000000009192 74.0
LYD3_k127_781154_11 Major paralogous domain - - - 0.000000000889 63.0
LYD3_k127_781154_2 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 428.0
LYD3_k127_781154_3 Multicopper oxidase K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 361.0
LYD3_k127_781154_4 Domain of unknown function (DUF1858) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 299.0
LYD3_k127_781154_5 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001076 274.0
LYD3_k127_781154_6 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000006771 221.0
LYD3_k127_781154_7 Pfam:DUF59 - - - 0.00000000000000000000000000000000000000003346 154.0
LYD3_k127_781154_8 hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000003554 143.0
LYD3_k127_781154_9 - - - - 0.0000000000000000002179 93.0
LYD3_k127_787344_0 Aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 5.811e-239 746.0
LYD3_k127_787344_1 amidohydrolase - - - 1.986e-204 647.0
LYD3_k127_787344_2 DeoC/LacD family aldolase K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 462.0
LYD3_k127_787344_3 Belongs to the aldehyde dehydrogenase family K22187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 391.0
LYD3_k127_787344_4 Sporulation related domain - - - 0.000000000000000000000000000000000000000005153 159.0
LYD3_k127_787344_5 amidohydrolase - - - 0.000000000000000000000003595 103.0
LYD3_k127_787735_0 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02622 - - 0.0 1067.0
LYD3_k127_787735_1 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006224 403.0
LYD3_k127_787735_2 Domain of unknown function (DUF4260) - - - 0.0000000000000000000000000000000000000000002736 161.0
LYD3_k127_787735_3 - - - - 0.000000000000000000000000000000000000001069 156.0
LYD3_k127_787735_4 DsrE/DsrF-like family - - - 0.00000003783 62.0
LYD3_k127_787886_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 0.0 1107.0
LYD3_k127_787886_1 fatty acid desaturase K00507 - 1.14.19.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003113 323.0
LYD3_k127_787886_2 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000001925 252.0
LYD3_k127_787886_3 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000003166 170.0
LYD3_k127_787886_4 Domain of unknown function (DUF4476) - - - 0.000000000114 71.0
LYD3_k127_788713_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 7.825e-213 668.0
LYD3_k127_788713_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 3.759e-197 621.0
LYD3_k127_788713_2 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000002079 230.0
LYD3_k127_788713_3 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000003882 129.0
LYD3_k127_792933_0 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 380.0
LYD3_k127_792933_1 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 321.0
LYD3_k127_792933_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000009326 216.0
LYD3_k127_792933_3 Clp protease adaptor protein ClpS K06891 - - 0.0000000000000000000000000000000000000001284 152.0
LYD3_k127_792933_4 glyoxalase - - - 0.00000000000000000004941 90.0
LYD3_k127_792933_5 DNA-3-methyladenine glycosylase K01246 - 3.2.2.20 0.0000000000000000005004 89.0
LYD3_k127_794630_0 Catalase K03781 - 1.11.1.6 1.537e-264 820.0
LYD3_k127_794630_1 Saccharopine dehydrogenase NADP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007519 432.0
LYD3_k127_794630_2 COGs COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 329.0
LYD3_k127_794630_3 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005732 274.0
LYD3_k127_794630_4 Protein of Unknown function (DUF2784) - - - 0.0000000000000000000000000000000000000000000000000000000007728 205.0
LYD3_k127_794630_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000000000000002131 196.0
LYD3_k127_794630_6 Calx-beta domain - - - 0.000000000000000000000000000000001647 141.0
LYD3_k127_806219_0 metallophosphoesterase - - - 1.321e-277 879.0
LYD3_k127_806219_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 342.0
LYD3_k127_806219_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006199 323.0
LYD3_k127_806219_3 SdiA-regulated - - - 0.0000000000000000000000000000000000000000000000000001265 206.0
LYD3_k127_806219_4 Acid phosphatase homologues K19302 - 3.6.1.27 0.0000000000000000000000000000000000002458 149.0
LYD3_k127_806219_5 SdiA-regulated - - - 0.000000000000000000000000000007185 136.0
LYD3_k127_812386_0 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002792 431.0
LYD3_k127_812386_1 Thymidylate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 351.0
LYD3_k127_812386_2 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001906 233.0
LYD3_k127_812386_3 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000000009174 179.0
LYD3_k127_812386_5 Transmembrane secretion effector - - - 0.0001414 46.0
LYD3_k127_812386_6 Wd-40 repeat - - - 0.0008371 48.0
LYD3_k127_820056_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1099.0
LYD3_k127_820056_1 Belongs to the glycosyl hydrolase 13 family K21575 GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016787,GO:0016798,GO:0031216,GO:0044464,GO:0071944 3.2.1.135 1.989e-281 878.0
LYD3_k127_820056_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 3.807e-256 794.0
LYD3_k127_820056_3 Major Facilitator K16211 - - 1.783e-218 684.0
LYD3_k127_820056_4 glucose-1-phosphate adenylyltransferase K00975 - 2.7.7.27 3.328e-213 669.0
LYD3_k127_820056_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000000001966 238.0
LYD3_k127_820056_6 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000001638 139.0
LYD3_k127_820056_8 TIGRFAM glucose galactose transporter K02429 - - 0.0002543 44.0
LYD3_k127_825381_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 424.0
LYD3_k127_825381_1 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 402.0
LYD3_k127_825381_2 COGs COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductase beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 286.0
LYD3_k127_825381_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000002479 192.0
LYD3_k127_825381_4 PFAM Photosynthetic reaction centre cytochrome C subunit K13992 - - 0.00000000000000000000000002018 115.0
LYD3_k127_827599_0 PFAM type I phosphodiesterase nucleotide pyrophosphatase - - - 2.206e-219 692.0
LYD3_k127_827599_1 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000884 483.0
LYD3_k127_827599_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000005826 238.0
LYD3_k127_827599_3 PFAM DsrE DsrF-like family K09004 - - 0.000000000000000000000000000000000000000388 153.0
LYD3_k127_827599_4 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000001204 151.0
LYD3_k127_827599_5 Acyl-coA-binding protein - - - 0.0000000000000000000000000000007313 123.0
LYD3_k127_827599_6 DinB superfamily - - - 0.00000000000000000000000000001943 124.0
LYD3_k127_827599_7 - - - - 0.000000000000000000000000005583 115.0
LYD3_k127_827599_8 Cytochrome c - - - 0.00000000005491 68.0
LYD3_k127_827599_9 Pkd domain containing protein - - - 0.00004849 48.0
LYD3_k127_839604_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 312.0
LYD3_k127_842301_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.538e-254 795.0
LYD3_k127_842301_1 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 382.0
LYD3_k127_842301_2 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 308.0
LYD3_k127_842301_3 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000003583 238.0
LYD3_k127_844893_0 GAF domain-containing protein K08968 - 1.8.4.14 0.00000000000000000000000000000000000000000000000000000000000000000000005011 243.0
LYD3_k127_844893_1 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.00000000000000000000000000032 115.0
LYD3_k127_844893_2 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.000002438 49.0
LYD3_k127_844893_3 PFAM SMP-30 Gluconolaconase - - - 0.0004651 51.0
LYD3_k127_845679_0 Methylase involved in ubiquinone menaquinone biosynthesis K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 418.0
LYD3_k127_845679_1 Dolichyl-phosphate-mannose-protein mannosyltransferase K07264 - 2.4.2.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 322.0
LYD3_k127_845679_2 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K01104,K03325,K03741,K03892,K18701 - 1.20.4.1,2.8.4.2,3.1.3.48 0.000000000000000000000000000000000000000000000000000007593 192.0
LYD3_k127_845679_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000002192 173.0
LYD3_k127_845679_4 Methyltransferase - - - 0.000000000000000004437 84.0
LYD3_k127_853463_0 Belongs to the ompA family - - - 4.49e-232 732.0
LYD3_k127_853463_1 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 284.0
LYD3_k127_862781_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 6.442e-232 728.0
LYD3_k127_862781_1 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002105 441.0
LYD3_k127_863135_0 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 524.0
LYD3_k127_863135_1 histidine kinase dimerisation and phosphoacceptor region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 521.0
LYD3_k127_863135_2 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009895 376.0
LYD3_k127_863135_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 284.0
LYD3_k127_863135_4 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007689 266.0
LYD3_k127_863135_5 Peptidyl-prolyl cis-trans isomerase K01802,K03774,K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000004826 247.0
LYD3_k127_863135_6 AzlC protein - - - 0.000000000000000000000000000000000000000000000000641 179.0
LYD3_k127_863135_7 Tetratricopeptide repeat - - - 0.0004568 49.0
LYD3_k127_866246_0 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 528.0
LYD3_k127_866246_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 428.0
LYD3_k127_866246_2 Belongs to the peptidase S51 family K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 424.0
LYD3_k127_866246_3 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004039 264.0
LYD3_k127_866246_4 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000001347 213.0
LYD3_k127_866246_5 Thioesterase-like superfamily K07107 - - 0.00000000000000000008763 90.0
LYD3_k127_869582_0 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 511.0
LYD3_k127_869582_1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 461.0
LYD3_k127_869582_2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 288.0
LYD3_k127_869582_3 SET domain - - - 0.000000000000000000000000000000000000000000000004324 179.0
LYD3_k127_869582_4 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000927 143.0
LYD3_k127_869582_5 C-terminal domain of CHU protein family - - - 0.0000000001079 63.0
LYD3_k127_869582_6 C-terminal domain of CHU protein family - - - 0.000001658 60.0
LYD3_k127_873329_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 421.0
LYD3_k127_873329_1 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 355.0
LYD3_k127_873329_2 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008103 342.0
LYD3_k127_873329_3 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000335 331.0
LYD3_k127_873329_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 333.0
LYD3_k127_875412_0 GTP cyclohydrolase 1 K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 374.0
LYD3_k127_875412_1 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006536 268.0
LYD3_k127_875412_2 FAD-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001298 224.0
LYD3_k127_875412_3 LysM domain - - - 0.0000000000000000000000000000000000000000000000000005095 192.0
LYD3_k127_875412_4 Adenylate guanylate cyclase K01768 - 4.6.1.1 0.0004026 45.0
LYD3_k127_87627_0 TIGRFAM Nicotinamide mononucleotide transporter PnuC K03811 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 306.0
LYD3_k127_87627_1 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004841 284.0
LYD3_k127_87627_2 ATPase kinase involved in NAD metabolism - - - 0.00000000000000000000000000000000000000000000000000000000000000008239 224.0
LYD3_k127_87627_3 peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000002964 210.0
LYD3_k127_879399_0 Penicillin binding protein transpeptidase domain K17838 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006715 410.0
LYD3_k127_879399_1 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 346.0
LYD3_k127_879399_2 belongs to the thioredoxin family - - - 0.0000000000000000000000000000000001161 141.0
LYD3_k127_89250_0 membrane protein required for spore maturation in B.subtilis K06373 - - 1.282e-201 637.0
LYD3_k127_89250_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 2.523e-197 621.0
LYD3_k127_89250_2 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 491.0
LYD3_k127_904682_0 PQQ enzyme repeat - - - 2.288e-263 824.0
LYD3_k127_904682_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 8.804e-205 655.0
LYD3_k127_904682_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008058 510.0
LYD3_k127_904682_3 calcium- and calmodulin-responsive adenylate cyclase activity K01406 - 3.4.24.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006857 438.0
LYD3_k127_904682_4 Ribonuclease H-like K09776 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003114 298.0
LYD3_k127_904682_5 Belongs to the GbsR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002858 264.0
LYD3_k127_904682_6 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000002722 169.0
LYD3_k127_904682_7 - - - - 0.00000000000001091 85.0
LYD3_k127_913748_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 546.0
LYD3_k127_913748_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000003419 222.0
LYD3_k127_913748_2 PFAM TonB-dependent Receptor Plug K02014,K16089 - - 0.000000000000000000000473 96.0
LYD3_k127_925241_0 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000004906 256.0
LYD3_k127_925241_1 TPR repeat - - - 0.000000000000000000000000000000472 141.0
LYD3_k127_925241_2 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000001272 107.0
LYD3_k127_92553_0 Oxidoreductase - - - 1.23e-265 822.0
LYD3_k127_92553_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 545.0
LYD3_k127_92553_2 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000001324 230.0
LYD3_k127_92553_3 cytidine and deoxycytidylate deaminase K01489 - 3.5.4.5 0.00000000000000000000000000000000000000000000000000000000000007189 216.0
LYD3_k127_92553_4 tRNA-binding protein K06878 - - 0.00000000000000000000000000000000000000000001295 164.0
LYD3_k127_933779_0 Participates in initiation and elongation during chromosome replication - - - 0.000000000000000000000000000000000000000000000000000000000000000658 241.0
LYD3_k127_933779_1 Y_Y_Y domain - - - 0.0000000000000000000000000000000000000000000000000000000000000008454 246.0
LYD3_k127_93491_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005358 541.0
LYD3_k127_93491_1 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000003902 196.0
LYD3_k127_935344_0 Nucleotidyl transferase K15669 - 2.7.7.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 477.0
LYD3_k127_935344_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000000000000002899 236.0
LYD3_k127_94279_0 Glycosyl transferases group 1 - - - 1.468e-233 737.0
LYD3_k127_94279_1 beta-1,4-mannooligosaccharide phosphorylase K20885,K21065 - 2.4.1.339,2.4.1.340,3.2.1.197 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003837 515.0
LYD3_k127_95729_0 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 516.0
LYD3_k127_95729_1 glycosyl transferase family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 477.0
LYD3_k127_95729_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003772 266.0
LYD3_k127_95729_3 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003194 285.0
LYD3_k127_95729_4 IPT/TIG domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002271 243.0
LYD3_k127_95729_5 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000003104 197.0
LYD3_k127_95729_7 metallopeptidase activity K01179,K03768,K08738 - 3.2.1.4,5.2.1.8 0.000000000000007428 85.0
LYD3_k127_95729_8 - - - - 0.000003982 53.0
LYD3_k127_958763_0 malic enzyme K00027,K00029 - 1.1.1.38,1.1.1.40 0.0 1223.0
LYD3_k127_958763_1 Alpha-2-macroglobulin family - - - 0.0 1143.0
LYD3_k127_958763_10 Domain of unknown function (DUF4476) - - - 0.0000000004063 69.0
LYD3_k127_958763_2 amidohydrolase - - - 3.416e-196 616.0
LYD3_k127_958763_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 511.0
LYD3_k127_958763_4 ABC transporter K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 417.0
LYD3_k127_958763_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 415.0
LYD3_k127_958763_6 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 366.0
LYD3_k127_958763_7 Belongs to the UPF0403 family - - - 0.000000000000000000000000000000000000000000000000000000000000001666 220.0
LYD3_k127_958763_8 - - - - 0.0000000000000000000000000000000000000000000002212 172.0
LYD3_k127_958763_9 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000000001008 166.0
LYD3_k127_970945_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 579.0
LYD3_k127_970945_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000003511 187.0
LYD3_k127_970945_2 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00177,K00187 - 1.2.7.3,1.2.7.7 0.00000000000000000000000000000000000000000000001119 174.0
LYD3_k127_970945_3 - - - - 0.000000000000000000000000000000000000000001736 159.0
LYD3_k127_970945_4 Protein of unknown function (DUF1569) - - - 0.0000000000000000000000000000000000000006624 152.0
LYD3_k127_971850_0 PFAM Peptidase M16 inactive domain K07263 - - 0.0 1029.0
LYD3_k127_997194_0 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 492.0
LYD3_k127_997194_1 TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000242 225.0