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Overview

ID MAG02052
Name LYD3_bin.5
Sample SMP0054
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Casimicrobiaceae
Genus CAIWHR01
Species
Assembly information
Completeness (%) 67.42
Contamination (%) 3.2
GC content (%) 68.0
N50 (bp) 5,561
Genome size (bp) 2,768,317

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2865

Gene name Description KEGG GOs EC E-value Score Sequence
LYD3_k127_1003930_0 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 1.092e-206 651.0
LYD3_k127_1003930_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 310.0
LYD3_k127_1003930_2 CoA-binding protein K06929 - - 0.00000000000000000000000000000000000000000000000000000000000253 216.0
LYD3_k127_1003930_3 Beta/Gamma crystallin - - - 0.00000000000000000000000000000000000000000000002531 183.0
LYD3_k127_1003930_4 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.0000000000000000000000000000000000000000000005663 174.0
LYD3_k127_1003930_5 Alpha beta hydrolase - - - 0.0000000000000000547 85.0
LYD3_k127_1007514_0 CoA binding domain - - - 1.314e-300 936.0
LYD3_k127_1007514_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 5.289e-198 626.0
LYD3_k127_1007514_2 phosphoserine phosphatase K02203 - 2.7.1.39,3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 341.0
LYD3_k127_1007514_3 Bacterial PH domain - - - 0.00000000000000000000000000000000000000000000000000000000001334 211.0
LYD3_k127_1007514_4 Thioesterase - - - 0.000000000000000000000000000000000000000000000000000000000585 204.0
LYD3_k127_1007514_5 - - - - 0.0000000000000000000000000000000000000000000000000000003153 210.0
LYD3_k127_1007514_6 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000004304 175.0
LYD3_k127_1007514_7 transcriptional regulator - - - 0.0000000000000000000000000000000000000006177 153.0
LYD3_k127_1007723_0 PFAM glycosyl transferase family 39 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007665 475.0
LYD3_k127_1007723_1 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000003306 158.0
LYD3_k127_1007723_2 FR47-like protein - - - 0.000000000000000000000000000000000006692 143.0
LYD3_k127_1007723_3 Small multidrug resistance - - - 0.000000000000000000000000000000004621 135.0
LYD3_k127_1008476_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000726 615.0
LYD3_k127_1008476_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001852 228.0
LYD3_k127_1008476_2 transporter K07238 - - 0.0000000000000000000000000000000000000000000000055 184.0
LYD3_k127_1016494_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003328 421.0
LYD3_k127_1016494_1 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000001088 190.0
LYD3_k127_1016494_2 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.0000000000000000000000000000000000000009777 154.0
LYD3_k127_1016494_3 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000356 100.0
LYD3_k127_104221_0 Dynamin family - - - 6.381e-204 653.0
LYD3_k127_104221_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 2.478e-200 630.0
LYD3_k127_104221_10 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 317.0
LYD3_k127_104221_11 GHMP kinases N terminal domain K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007813 282.0
LYD3_k127_104221_12 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000004776 245.0
LYD3_k127_104221_13 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000002686 230.0
LYD3_k127_104221_14 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000001297 203.0
LYD3_k127_104221_15 Conserved hypothetical protein 95 - - - 0.000000000000000000000000000000000000000000000001708 181.0
LYD3_k127_104221_16 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000004899 154.0
LYD3_k127_104221_17 Outer membrane lipoprotein LolB - - - 0.000000000000000000000000000005462 127.0
LYD3_k127_104221_18 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000004375 82.0
LYD3_k127_104221_2 Protein conserved in bacteria K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007102 609.0
LYD3_k127_104221_3 Putative oxidoreductase C terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 564.0
LYD3_k127_104221_4 Transport of potassium into the cell K03549 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 538.0
LYD3_k127_104221_5 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005414 498.0
LYD3_k127_104221_6 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 451.0
LYD3_k127_104221_7 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 389.0
LYD3_k127_104221_8 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 376.0
LYD3_k127_104221_9 SMART Tetratricopeptide domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 370.0
LYD3_k127_1056611_0 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 300.0
LYD3_k127_1056611_1 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000004641 260.0
LYD3_k127_1056611_2 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000009449 199.0
LYD3_k127_1056611_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000004602 200.0
LYD3_k127_1056611_4 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000001158 59.0
LYD3_k127_1099201_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 504.0
LYD3_k127_1099201_1 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576 - 0.00000000000000000000000000000000000000000000000000567 185.0
LYD3_k127_1099201_2 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000607 160.0
LYD3_k127_1099201_3 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.000000000000000000000000000000005123 136.0
LYD3_k127_1099201_4 CutA1 divalent ion tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.0000000000000000000000000000001581 134.0
LYD3_k127_1099201_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000001336 79.0
LYD3_k127_1099201_6 Protein affecting phage T7 exclusion by the F plasmid K07113 - - 0.000579 49.0
LYD3_k127_1110279_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 596.0
LYD3_k127_1110279_1 protein kinase activity - - - 0.000000001354 68.0
LYD3_k127_1112492_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 499.0
LYD3_k127_1112492_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 332.0
LYD3_k127_1112492_2 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 294.0
LYD3_k127_1112492_3 Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000008485 213.0
LYD3_k127_1112492_4 Haemolysin-III related K11068 - - 0.0000001915 60.0
LYD3_k127_1112492_5 Sterol-binding protein K03690 - - 0.0002017 51.0
LYD3_k127_1112531_0 Malic enzyme K00029 - 1.1.1.40 1.062e-300 934.0
LYD3_k127_1112531_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000004541 254.0
LYD3_k127_1112531_2 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000006958 171.0
LYD3_k127_1112531_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.0000000000000000000000000000000000002542 142.0
LYD3_k127_1142423_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009297 464.0
LYD3_k127_1142423_1 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000734 356.0
LYD3_k127_1142423_2 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.0000000000000000000000000000000000000000000000000000000434 201.0
LYD3_k127_1142423_3 ribosomal subunit interface protein K05808 - - 0.000000000000000000000000000000000000007303 149.0
LYD3_k127_1164205_0 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 589.0
LYD3_k127_1164205_1 PFAM alpha beta hydrolase K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 364.0
LYD3_k127_1164205_2 CYTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002602 261.0
LYD3_k127_1164205_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000002385 64.0
LYD3_k127_1179198_0 Circularly permuted ATP-grasp type 2 - - - 1.686e-228 718.0
LYD3_k127_1179198_1 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 354.0
LYD3_k127_1179198_2 Proteasome subunit K07395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000301 236.0
LYD3_k127_1184608_0 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002236 340.0
LYD3_k127_1184608_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000004167 161.0
LYD3_k127_1184608_2 TPM domain - - - 0.0000000000000000000000000000000001299 142.0
LYD3_k127_1204176_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 7.922e-242 763.0
LYD3_k127_123184_0 KR domain K10780 - 1.3.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 304.0
LYD3_k127_123184_1 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009918 291.0
LYD3_k127_123184_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000005065 216.0
LYD3_k127_123184_3 Phosphopantetheine attachment site - - - 0.0000000000000000000000000000000000001092 153.0
LYD3_k127_123184_4 Isoprenylcysteine carboxyl methyltransferase - - - 0.000000003143 67.0
LYD3_k127_123184_5 amino acid adenylation domain protein K04780 - - 0.0007818 52.0
LYD3_k127_123184_6 Alpha beta hydrolase - - - 0.0009311 51.0
LYD3_k127_1242566_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.132e-251 778.0
LYD3_k127_1242566_1 Tripartite tricarboxylate transporter TctA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 605.0
LYD3_k127_1242566_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 323.0
LYD3_k127_1242566_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 294.0
LYD3_k127_1242566_4 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 288.0
LYD3_k127_1242566_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000009534 193.0
LYD3_k127_1242566_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000001883 175.0
LYD3_k127_1242566_7 preprotein translocase K03075 - - 0.00000000000000000000000000162 116.0
LYD3_k127_1248054_0 alcohol dehydrogenase K19745 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 422.0
LYD3_k127_1248054_1 protoporphyrinogen oxidase activity K00231,K14266 - 1.14.19.9,1.3.3.15,1.3.3.4 0.0000000003843 64.0
LYD3_k127_1248054_2 COG0500 SAM-dependent methyltransferases - - - 0.000000009923 59.0
LYD3_k127_127524_0 ABC transporter transmembrane region K06147 - - 9.888e-257 802.0
LYD3_k127_127524_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 417.0
LYD3_k127_127524_2 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001827 267.0
LYD3_k127_1305224_0 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 462.0
LYD3_k127_1305224_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001806 289.0
LYD3_k127_1305224_2 AcrB/AcrD/AcrF family K03296 - - 0.00000000000000000000000000000000000000000007272 175.0
LYD3_k127_1305224_3 Branched-chain amino acid transport system / permease component - - - 0.00000000000000000003989 93.0
LYD3_k127_132965_0 abc transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 501.0
LYD3_k127_132965_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 454.0
LYD3_k127_132965_2 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 317.0
LYD3_k127_132965_3 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001835 270.0
LYD3_k127_132965_4 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006188 269.0
LYD3_k127_132965_5 Hemerythrin HHE cation binding - - - 0.00000000000000000000000000000000000000000000000001373 188.0
LYD3_k127_132965_6 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.000000000000000000000007671 100.0
LYD3_k127_132965_7 Protein of unknown function (DUF1223) - - - 0.00000000000000000001913 95.0
LYD3_k127_132965_8 Transglycosylase associated protein - - - 0.000000000000001894 85.0
LYD3_k127_133234_0 PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A K01908 - 6.2.1.17 6.618e-204 640.0
LYD3_k127_133234_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 539.0
LYD3_k127_133234_2 L-asparaginase II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 357.0
LYD3_k127_133234_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 315.0
LYD3_k127_133234_4 Sigma E regulatory protein, MucB RseB K03598 - - 0.00000000000000000000000000000000000000000000000000000000000000000003129 244.0
LYD3_k127_133234_5 Anti sigma-E protein RseA, N-terminal domain K03597 - - 0.000000000000000000000664 101.0
LYD3_k127_133234_6 PFAM glutaredoxin 2 - - - 0.00000000000002208 81.0
LYD3_k127_133234_7 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009268,GO:0009409,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042802,GO:0043021,GO:0043023,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0050896,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000004487 65.0
LYD3_k127_13377_0 ornithine cyclodeaminase mu-crystallin K01750,K19244 - 1.4.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 522.0
LYD3_k127_13377_1 Histidine ammonia-lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005556 513.0
LYD3_k127_13377_10 HutD K09975 - - 0.0000000000000000000000000000000006282 140.0
LYD3_k127_13377_11 Putative prokaryotic signal transducing protein - - - 0.0000000000000001825 88.0
LYD3_k127_13377_2 deiminase K05603 - 3.5.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005461 470.0
LYD3_k127_13377_3 glycine betaine K05845 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 419.0
LYD3_k127_13377_4 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
LYD3_k127_13377_5 ABC transporter K05847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 334.0
LYD3_k127_13377_6 Binding-protein-dependent transport system inner membrane component K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000366 274.0
LYD3_k127_13377_7 ABC-type proline glycine betaine transport K05845,K05846 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001294 263.0
LYD3_k127_13377_8 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000001522 235.0
LYD3_k127_13377_9 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000005454 171.0
LYD3_k127_1343662_0 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 492.0
LYD3_k127_1343662_1 lipoprotein releasing system, transmembrane protein, LolC E family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 469.0
LYD3_k127_1343662_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 380.0
LYD3_k127_1343662_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 331.0
LYD3_k127_1343662_4 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 322.0
LYD3_k127_1343662_5 Glucuronate isomerase K01812 GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0019585,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0042839,GO:0042840,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0071704,GO:0072329,GO:1901575 5.3.1.12 0.000000000000000000000000000000000000000000000000000000000000002984 218.0
LYD3_k127_1343662_6 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.00000000000000000000000000000000000000000000000000002456 192.0
LYD3_k127_1343662_7 Aminotransferase - - - 0.0000000000000000000000000002368 117.0
LYD3_k127_1343662_8 Excalibur calcium-binding domain - - - 0.0002588 50.0
LYD3_k127_1347342_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.228e-250 796.0
LYD3_k127_1347342_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 469.0
LYD3_k127_1347342_2 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 406.0
LYD3_k127_1347342_3 NADPH-dependent FMN reductase K19784 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006091 253.0
LYD3_k127_1347342_4 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000000000000000000000003901 130.0
LYD3_k127_1347342_5 Heavy metal transport detoxification protein K07213 - - 0.00000000000009275 83.0
LYD3_k127_1347342_6 - - - - 0.0006003 48.0
LYD3_k127_136372_0 Aminotransferase K01845 - 5.4.3.8 1.962e-194 617.0
LYD3_k127_136372_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 432.0
LYD3_k127_136372_10 Rubredoxin - - - 0.000000000000000000000000002041 113.0
LYD3_k127_136372_11 Glycosyl transferases group 1 - - - 0.0000000000000000006428 99.0
LYD3_k127_136372_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 401.0
LYD3_k127_136372_3 General secretion pathway protein K02454 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 409.0
LYD3_k127_136372_4 Glycosyl transferase family 41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 407.0
LYD3_k127_136372_5 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000397 269.0
LYD3_k127_136372_6 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759 - 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000000008523 229.0
LYD3_k127_136372_7 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000000000000000000152 203.0
LYD3_k127_136372_8 SURF1 family - - - 0.000000000000000000000000000000000000000000000000000004394 199.0
LYD3_k127_136372_9 signal sequence binding - - - 0.0000000000000000000000000000000000006974 149.0
LYD3_k127_1363781_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00647,K09458 - 2.3.1.179,2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005314 457.0
LYD3_k127_1363781_1 Aspartyl/Asparaginyl beta-hydroxylase K00476,K12979 - 1.14.11.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 392.0
LYD3_k127_1363781_2 Beta-ketoacyl synthase, C-terminal domain K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 367.0
LYD3_k127_1363781_3 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004011 276.0
LYD3_k127_1363781_4 lipid A biosynthesis K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000000009263 256.0
LYD3_k127_1363781_5 FabA-like domain - - - 0.0000000000000000000000000000526 129.0
LYD3_k127_1363781_6 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085,GO:0071702 - 0.000000000000000000000000002573 112.0
LYD3_k127_1364278_0 HD domain - - - 4.487e-232 742.0
LYD3_k127_1364278_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 3.514e-203 644.0
LYD3_k127_1364278_2 PFAM AMP-dependent synthetase and ligase - - - 5.311e-199 634.0
LYD3_k127_1364278_3 Amidohydrolase family K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003609 567.0
LYD3_k127_1364278_4 Polyhydroxyalkanoate synthesis repressor PhaR - - - 0.00000000000001256 75.0
LYD3_k127_1366322_0 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K16846 - 4.4.1.24 8.422e-216 674.0
LYD3_k127_1366322_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 391.0
LYD3_k127_1366322_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 310.0
LYD3_k127_1366322_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000001198 267.0
LYD3_k127_1366322_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000003044 231.0
LYD3_k127_1366322_5 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000000001743 190.0
LYD3_k127_1366322_6 SAF K16845 - 4.4.1.24 0.0000000000000000000000000000000000114 147.0
LYD3_k127_136941_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 3.091e-198 629.0
LYD3_k127_136941_1 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003229 275.0
LYD3_k127_136941_2 Rod shape-determining protein MreB K03569 - - 0.000000000000000000000000000000000000000000000000000000002014 200.0
LYD3_k127_136941_3 shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000004449 149.0
LYD3_k127_1375547_0 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008634 403.0
LYD3_k127_1375547_1 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.0000000000000000000000000000000000000000000000000000000000000000008844 237.0
LYD3_k127_1375547_2 PFAM UspA domain protein K07090 - - 0.000000000000000000000000000000000000000000000000003397 186.0
LYD3_k127_1375547_3 - - - - 0.0000000000000000000000000000000009809 134.0
LYD3_k127_1375547_4 - - - - 0.000000000000001139 81.0
LYD3_k127_1382349_0 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007878 511.0
LYD3_k127_1382349_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 456.0
LYD3_k127_1382349_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 402.0
LYD3_k127_1388149_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 370.0
LYD3_k127_1388149_1 poly(R)-hydroxyalkanoic acid synthase K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000429 261.0
LYD3_k127_1388149_2 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000002318 181.0
LYD3_k127_1388149_3 transcriptional - - - 0.00000000000000000000000000000000003648 142.0
LYD3_k127_1388149_4 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 0.00000000000000005537 81.0
LYD3_k127_1407521_0 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004249 570.0
LYD3_k127_1407521_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 542.0
LYD3_k127_1421602_0 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 1.238e-216 681.0
LYD3_k127_1421602_1 sulfite reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000001319 234.0
LYD3_k127_1421602_2 DsrE/DsrF-like family K07235 - - 0.000000000000000000000000000000000000000000000000000000000000001072 219.0
LYD3_k127_1421602_3 DsrE/DsrF-like family K07236 - - 0.000000000000000000000000000000000000000000000000008606 197.0
LYD3_k127_1423932_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 3.252e-283 890.0
LYD3_k127_1423932_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 562.0
LYD3_k127_1423932_2 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 366.0
LYD3_k127_1423932_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 348.0
LYD3_k127_1423932_4 Cytochrome c K17223 - - 0.00000000000000000000000000000000000000000000000000000000000001592 238.0
LYD3_k127_1423932_5 Sulfur oxidation protein SoxY K17226 - - 0.000000000000000000000000000000000000000000000000003018 186.0
LYD3_k127_1423932_6 Glycosyltransferase like family - - - 0.000000000000000000000000000000000000000000000005591 195.0
LYD3_k127_1423932_7 oxidation protein K17227 - - 0.000000000000000000000000000000000000000000009719 166.0
LYD3_k127_1423932_8 PFAM peptidase - - - 0.0000003449 61.0
LYD3_k127_1425114_0 Putative amidoligase enzyme (DUF2126) - - - 0.0 1124.0
LYD3_k127_1425114_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 605.0
LYD3_k127_1425114_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.00000004283 54.0
LYD3_k127_1425731_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007425 466.0
LYD3_k127_1425731_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 445.0
LYD3_k127_1425731_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006608 233.0
LYD3_k127_1425731_3 Bacterial extracellular solute-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000000000004998 231.0
LYD3_k127_1450387_0 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003612 400.0
LYD3_k127_1450387_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 355.0
LYD3_k127_1450387_2 Protein of unknown function (DUF423) - - - 0.000000000000000000000000000000003705 131.0
LYD3_k127_147798_0 Fumarate lyase K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 574.0
LYD3_k127_147798_1 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 303.0
LYD3_k127_1479217_0 Immune inhibitor A peptidase M6 K09607 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008095 527.0
LYD3_k127_1479217_1 Belongs to the peptidase M16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002978 511.0
LYD3_k127_1479217_10 Glutathione peroxidase K00432 - 1.11.1.9 0.00000000000000000000000000000000000000000000000000000000000000001741 231.0
LYD3_k127_1479217_11 Protein of unknown function (DUF3833) - - - 0.0000000000000000000000000000000000000000000000000000000000000001963 244.0
LYD3_k127_1479217_12 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.0000000000000000000000000000000000005461 145.0
LYD3_k127_1479217_13 - - - - 0.0000000000000000000000004006 112.0
LYD3_k127_1479217_14 Peptidase M6, immune inhibitor A K09607 - - 0.00000000000000000000001797 100.0
LYD3_k127_1479217_15 GTP cyclohydrolase K01495 - 3.5.4.16 0.0000000000000000002621 89.0
LYD3_k127_1479217_16 - - - - 0.000000000000000001698 89.0
LYD3_k127_1479217_17 Chalcone isomerase-like - - - 0.000000000000004629 87.0
LYD3_k127_1479217_18 Uncharacterized conserved protein (DUF2075) - - - 0.000000457 61.0
LYD3_k127_1479217_2 Flavin containing amine oxidoreductase K06954 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004626 507.0
LYD3_k127_1479217_3 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 434.0
LYD3_k127_1479217_4 DEAD DEAH box helicase K03724 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 377.0
LYD3_k127_1479217_5 MFS/sugar transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 368.0
LYD3_k127_1479217_6 Phage integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 332.0
LYD3_k127_1479217_7 B12 binding domain K22491 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 316.0
LYD3_k127_1479217_8 Protein of unknown function (DUF1365) K09701 - - 0.00000000000000000000000000000000000000000000000000000000000000000001405 259.0
LYD3_k127_1479217_9 Immune inhibitor A peptidase M6 K09607 - - 0.00000000000000000000000000000000000000000000000000000000000000000006395 236.0
LYD3_k127_1483570_0 Sodium/hydrogen exchanger family K03455,K11745,K11747 - - 4.06e-220 696.0
LYD3_k127_1483570_1 NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009454 348.0
LYD3_k127_1483570_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001854 276.0
LYD3_k127_1483570_3 NADPH-quinone reductase (modulator of drug activity B) K00355,K11746,K11748 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000002426 203.0
LYD3_k127_1483759_0 ATP ADP translocase K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 449.0
LYD3_k127_1483759_1 Predicted integral membrane protein (DUF2189) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 291.0
LYD3_k127_1483759_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000001121 237.0
LYD3_k127_1483759_3 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000376 160.0
LYD3_k127_1486247_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 6.631e-255 803.0
LYD3_k127_1486247_1 Solute carrier family 35 - - - 0.000000000000000000000000000000000000005279 153.0
LYD3_k127_1486949_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008183 271.0
LYD3_k127_1486949_1 Glycosyl hydrolase 38 domain protein K01191 - 3.2.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000005658 256.0
LYD3_k127_1495312_0 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009502 610.0
LYD3_k127_1495312_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 380.0
LYD3_k127_1495312_2 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 349.0
LYD3_k127_1495312_3 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 335.0
LYD3_k127_1495312_4 Protein of unknown function, DUF480 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 288.0
LYD3_k127_1495312_5 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000007551 205.0
LYD3_k127_1495312_6 SMART cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000000000000000003518 195.0
LYD3_k127_1495312_7 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000004303 117.0
LYD3_k127_1495312_8 - - - - 0.000000000004248 75.0
LYD3_k127_1495312_9 - - - - 0.000004811 54.0
LYD3_k127_1496789_0 4Fe-4S dicluster domain - - - 0.0 1052.0
LYD3_k127_1502546_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 3.267e-247 773.0
LYD3_k127_1502546_1 Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 565.0
LYD3_k127_1502546_2 enoyl-CoA hydratase K15513 - 4.1.2.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 370.0
LYD3_k127_1502546_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K15546 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 364.0
LYD3_k127_1502546_4 Domain of unknown function (DUF4863) - - - 0.00000000000000000000000000000000000000000000000000000000000891 211.0
LYD3_k127_1502546_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000007793 97.0
LYD3_k127_1503475_0 ERAP1-like C-terminal domain K01256 - 3.4.11.2 2.322e-296 934.0
LYD3_k127_1503475_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 1.987e-236 743.0
LYD3_k127_1503475_10 Domain of unknown function (DUF1330) - - - 0.0000000000000000000000000000004394 134.0
LYD3_k127_1503475_11 - - - - 0.00000000000009308 76.0
LYD3_k127_1503475_2 PFAM peptidase S10 serine carboxypeptidase - - - 3.141e-217 684.0
LYD3_k127_1503475_3 Homoserine dehydrogenase, NAD binding domain-containing protein - - - 2.512e-211 666.0
LYD3_k127_1503475_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 8.331e-202 636.0
LYD3_k127_1503475_5 Sodium/calcium exchanger protein K07300 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 482.0
LYD3_k127_1503475_6 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 316.0
LYD3_k127_1503475_7 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 283.0
LYD3_k127_1503475_8 Disulphide bond corrector protein DsbC K04084,K08344 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000791 271.0
LYD3_k127_1503475_9 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K20866 - 3.1.3.10 0.000000000000000000000000000000000000000001674 165.0
LYD3_k127_150422_0 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003894 339.0
LYD3_k127_150422_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 312.0
LYD3_k127_150422_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001103 263.0
LYD3_k127_150422_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001361 248.0
LYD3_k127_150422_4 integral membrane protein K02221 - - 0.00000000000000000000000000000000000000002264 169.0
LYD3_k127_150422_5 DUF167 K09131 - - 0.00000000000000000000000002594 110.0
LYD3_k127_1514776_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.303e-229 719.0
LYD3_k127_1514776_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 451.0
LYD3_k127_1514776_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 447.0
LYD3_k127_1514776_3 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 342.0
LYD3_k127_1514776_4 colicin v production K03558 - - 0.00000000000000000000000000002463 126.0
LYD3_k127_1514776_5 Sporulation related domain K03749 - - 0.00000000000009072 82.0
LYD3_k127_1514776_6 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 0.0000000000009922 68.0
LYD3_k127_1523586_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 9.344e-287 893.0
LYD3_k127_1523586_1 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.000000000000000000000000000000000007249 140.0
LYD3_k127_1523586_2 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00001756 47.0
LYD3_k127_152650_0 tRNA wobble cytosine modification - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 458.0
LYD3_k127_152650_1 SPFH domain-Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 286.0
LYD3_k127_152650_2 Short-chain dehydrogenase reductase (SDR) - - - 0.000000000000005022 80.0
LYD3_k127_1542205_0 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 578.0
LYD3_k127_1542205_1 Predicted membrane protein (DUF2127) - - - 0.000000000000000000000000000000000000000000000000003094 190.0
LYD3_k127_1542205_2 cytochrome c5 - - - 0.000000000000000000000000001407 118.0
LYD3_k127_1556985_0 Phosphoketolase K01621 - 4.1.2.22,4.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006234 403.0
LYD3_k127_1556985_1 Steryl acetyl hydrolase K14731 - 3.1.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002452 276.0
LYD3_k127_1556985_2 - - - - 0.0000000000000000000000000000000000001729 148.0
LYD3_k127_1559569_0 Protein of unknown function (DUF1015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 515.0
LYD3_k127_1559569_1 glutamate-cysteine ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 469.0
LYD3_k127_1560276_0 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 327.0
LYD3_k127_1560276_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001479 277.0
LYD3_k127_1560276_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000002813 150.0
LYD3_k127_1565678_0 Uncharacterised protein family (UPF0227) K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 330.0
LYD3_k127_1565678_1 3-demethylubiquinone-9 3-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003912 261.0
LYD3_k127_1565678_2 Hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000001102 235.0
LYD3_k127_1565678_3 Protein of unknown function (DUF3182) - - - 0.000000000000000000000000000000000000000000000000006931 192.0
LYD3_k127_1565678_4 Protein of unknown function (DUF3182) - - - 0.00000000000000000000000000000000000000000000000001724 188.0
LYD3_k127_1565678_5 Trypsin-like peptidase domain - - - 0.0000000000000003374 79.0
LYD3_k127_1565678_6 - - - - 0.0000005113 57.0
LYD3_k127_1565678_7 response to toxic substance K16347,K16348 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0001427 48.0
LYD3_k127_1567737_0 Domain of unknown function (DUF3394) - - - 1.491e-257 813.0
LYD3_k127_1567737_1 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 548.0
LYD3_k127_1567737_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005687 473.0
LYD3_k127_1567737_3 TRAP transporter solute receptor TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 434.0
LYD3_k127_1567737_4 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006931 296.0
LYD3_k127_1567737_5 Nudix N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001404 253.0
LYD3_k127_1575955_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001878 419.0
LYD3_k127_1575955_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.000000000000000000000000000000000000000000007368 165.0
LYD3_k127_1575955_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K16264 - - 0.000001919 51.0
LYD3_k127_1603163_0 Adenylosuccinate lyase C-terminal K01756 - 4.3.2.2 1.102e-197 631.0
LYD3_k127_1603163_1 Psort location CytoplasmicMembrane, score 10.00 K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001614 250.0
LYD3_k127_1603163_2 acetate--CoA ligase ACS, chloroplastic glyoxysomal-like K01895 - 6.2.1.1 0.00000000000000000000000000000005782 125.0
LYD3_k127_1603163_3 - - - - 0.0000000000503 70.0
LYD3_k127_1604362_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 304.0
LYD3_k127_1604362_1 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000006066 116.0
LYD3_k127_1612131_0 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 347.0
LYD3_k127_1612131_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 347.0
LYD3_k127_161333_0 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006625 469.0
LYD3_k127_161333_1 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000139 154.0
LYD3_k127_161333_2 PFAM ABC transporter K05847 - - 0.000000000000000000000000000001627 124.0
LYD3_k127_1616196_0 transferase activity, transferring acyl groups K14658,K17840,K18815 - 2.3.1.59,2.3.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 627.0
LYD3_k127_1616196_1 Cation efflux family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 465.0
LYD3_k127_1616196_2 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002802 240.0
LYD3_k127_1616196_3 NAD dependent epimerase/dehydratase family - - - 0.000000000000000000000000000000000000002825 156.0
LYD3_k127_1624809_0 Protein of unknown function (DUF2867) - - - 4.024e-202 642.0
LYD3_k127_1624809_1 Belongs to the DapA family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005896 413.0
LYD3_k127_1624809_2 Neutral zinc metallopeptidase K07054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 327.0
LYD3_k127_1624809_3 Beta/gamma crystallins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003849 299.0
LYD3_k127_1624809_4 NmrA-like family K19267 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000001115 264.0
LYD3_k127_1624809_5 - - - - 0.000000000000000000000000000000000000000007349 160.0
LYD3_k127_1624809_6 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000001474 126.0
LYD3_k127_1624809_7 Membrane - - - 0.00000000000000000000001209 111.0
LYD3_k127_1624809_8 Protein of unknown function (DUF3616) - - - 0.0000000000008661 71.0
LYD3_k127_1634347_0 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 303.0
LYD3_k127_1634347_1 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000001015 216.0
LYD3_k127_1634347_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000003887 146.0
LYD3_k127_165180_0 Protein of unknown function - - - 4.822e-203 666.0
LYD3_k127_165180_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 496.0
LYD3_k127_165180_2 FtsK SpoIIIE K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007331 380.0
LYD3_k127_165180_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 377.0
LYD3_k127_165180_4 Smr domain - - - 0.000000000000000000000000000000000000000000001379 174.0
LYD3_k127_1655430_0 acetylesterase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 381.0
LYD3_k127_1655430_1 PFAM ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003453 275.0
LYD3_k127_1655430_2 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004991 278.0
LYD3_k127_1655430_3 TIGRFAM Methylglyoxal synthase K01734 - 4.2.3.3 0.00000000000000000000000000000000000000000000000000000000003381 215.0
LYD3_k127_1655430_4 N-acetyltransferase - - - 0.0000000000000000000000000000000000005208 153.0
LYD3_k127_1655430_5 Protein of unknown function (DUF1631) - - - 0.0000000000000000000000000000005741 142.0
LYD3_k127_1655430_6 Aldo keto reductase - - - 0.0000000000000000000000000007403 113.0
LYD3_k127_1655430_7 PFAM acyl-CoA dehydrogenase domain protein K09456 - - 0.0001123 48.0
LYD3_k127_1677975_0 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 592.0
LYD3_k127_1677975_1 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003589 286.0
LYD3_k127_1677975_2 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000004976 240.0
LYD3_k127_1677975_3 LysE type translocator - - - 0.00000000000000000000000000004621 118.0
LYD3_k127_1677975_4 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 0.00000000000000000000000001519 117.0
LYD3_k127_169040_0 Binding-protein-dependent transport system inner membrane component K02025,K10237 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007153 488.0
LYD3_k127_169040_1 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 478.0
LYD3_k127_169040_2 Ammonium Transporter Family K03320,K06580 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008477 256.0
LYD3_k127_169040_3 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000000004151 173.0
LYD3_k127_1702805_0 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 411.0
LYD3_k127_1702805_1 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.00000000000000000000000000000000000000000001447 179.0
LYD3_k127_1743632_0 Isocitrate lyase K01637 - 4.1.3.1 6.564e-237 739.0
LYD3_k127_1743632_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 4.585e-194 636.0
LYD3_k127_1743632_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 624.0
LYD3_k127_1743632_3 RNA-metabolising metallo-beta-lactamase K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 534.0
LYD3_k127_1743632_4 Sulfide dehydrogenase K05301,K17218 - 1.8.2.1,1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003856 390.0
LYD3_k127_1743632_5 Cytochrome c, class I - - - 0.0000000000000000000000000000005294 125.0
LYD3_k127_1743632_6 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000001487 114.0
LYD3_k127_1743632_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000001395 113.0
LYD3_k127_1744385_0 peptidase m48, ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 441.0
LYD3_k127_1744385_1 Histidine kinase K20975 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 323.0
LYD3_k127_1744385_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000002541 225.0
LYD3_k127_1744385_3 FCD - - - 0.0000000000000000000000000000000000000000000000000000004459 203.0
LYD3_k127_1744385_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000004795 177.0
LYD3_k127_1761100_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 2.698e-195 624.0
LYD3_k127_1761100_1 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005673 415.0
LYD3_k127_1761100_2 Protein of unknown function (DUF541) - - - 0.0000000000000000000000000000000000003489 149.0
LYD3_k127_1761100_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000002924 69.0
LYD3_k127_1761100_4 DNA-binding transcription factor activity - - - 0.0000418 49.0
LYD3_k127_1762266_0 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001248 264.0
LYD3_k127_1762266_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000003703 227.0
LYD3_k127_1762266_2 Ferritin, Dps family protein K03594 - 1.16.3.1 0.000000000000272 78.0
LYD3_k127_177091_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 8.384e-200 638.0
LYD3_k127_17986_0 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 428.0
LYD3_k127_17986_1 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000006181 205.0
LYD3_k127_17986_2 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000009695 158.0
LYD3_k127_17986_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000002955 158.0
LYD3_k127_181222_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 604.0
LYD3_k127_181222_1 Periplasmic or secreted lipoprotein K04065 - - 0.000000000000000000000000001034 114.0
LYD3_k127_1824681_0 ABC-type sugar transport system periplasmic component K02027,K05813 - - 4.872e-200 629.0
LYD3_k127_1824681_1 COG3839 ABC-type sugar transport systems, ATPase components K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 417.0
LYD3_k127_1824681_2 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000177 242.0
LYD3_k127_1828167_0 DNA replication, recombination, and repair K07478 - - 8.596e-200 630.0
LYD3_k127_1828167_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 601.0
LYD3_k127_1828167_2 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006774 318.0
LYD3_k127_1828167_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000000000000000000000000000000000000000000003402 226.0
LYD3_k127_1828167_4 cell division protein K03466 - - 0.000000006571 56.0
LYD3_k127_1838237_0 4-hydroxyphenylacetate K00483,K14534 - 1.14.14.9,4.2.1.120,5.3.3.3 2.703e-225 711.0
LYD3_k127_1838237_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 599.0
LYD3_k127_1838237_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 354.0
LYD3_k127_1838237_3 - - - - 0.00000000000000000000000000000000000000000000000000001276 197.0
LYD3_k127_1838237_4 COG1335 Amidases related to nicotinamidase - - - 0.000000000000000000000000000000000000659 146.0
LYD3_k127_1859095_0 Thiamine pyrophosphate enzyme, central domain K04103 - 4.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 415.0
LYD3_k127_1859095_1 Ion transport 2 domain protein - - - 0.000000000000000003647 94.0
LYD3_k127_1864237_0 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000534 458.0
LYD3_k127_1864237_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 379.0
LYD3_k127_1864237_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000006658 216.0
LYD3_k127_1864237_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000009446 85.0
LYD3_k127_186695_0 His Kinase A (phosphoacceptor) domain K02482 - 2.7.13.3 0.0 1029.0
LYD3_k127_186695_1 ABC-type nitrate sulfonate bicarbonate transport K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 518.0
LYD3_k127_186695_10 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000009519 115.0
LYD3_k127_186695_11 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000004137 109.0
LYD3_k127_186695_12 N-acetyltransferase - - - 0.0000000000000000000000001535 115.0
LYD3_k127_186695_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 370.0
LYD3_k127_186695_3 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 374.0
LYD3_k127_186695_4 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 366.0
LYD3_k127_186695_5 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000000000005173 209.0
LYD3_k127_186695_6 Protein conserved in bacteria K09984 - - 0.0000000000000000000000000000000000000000000000000007056 184.0
LYD3_k127_186695_7 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000002453 199.0
LYD3_k127_186695_8 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000873 145.0
LYD3_k127_186695_9 - - - - 0.000000000000000000000000000000003292 139.0
LYD3_k127_18750_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 471.0
LYD3_k127_18750_1 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 399.0
LYD3_k127_18750_2 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 370.0
LYD3_k127_18750_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 350.0
LYD3_k127_18750_4 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006452 334.0
LYD3_k127_18750_5 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001575 275.0
LYD3_k127_18750_6 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001739 257.0
LYD3_k127_18750_7 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000314 229.0
LYD3_k127_1879281_0 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 366.0
LYD3_k127_1879281_1 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000364 300.0
LYD3_k127_1879281_2 - - - - 0.0000000000000000000000000000000000000000000001008 175.0
LYD3_k127_1910180_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000437 350.0
LYD3_k127_1910180_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000178 259.0
LYD3_k127_1910180_2 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000000000008552 226.0
LYD3_k127_1910180_3 dna polymerase iii K02341 - 2.7.7.7 0.00000000000000000002665 98.0
LYD3_k127_1910180_4 Prokaryotic N-terminal methylation motif - - - 0.0005464 46.0
LYD3_k127_19537_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005013 539.0
LYD3_k127_19537_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 490.0
LYD3_k127_19537_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008437 466.0
LYD3_k127_19537_3 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0000000000000000000000001544 106.0
LYD3_k127_19748_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 2.378e-268 834.0
LYD3_k127_19748_1 Tetratricopeptide repeat K02200 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000185 291.0
LYD3_k127_19748_2 Periplasmic protein thiol disulfide oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007293 252.0
LYD3_k127_19748_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003526 254.0
LYD3_k127_19748_4 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000256 171.0
LYD3_k127_1986374_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 2.879e-207 651.0
LYD3_k127_2008187_0 Major Facilitator Superfamily K03446 - - 1.444e-216 684.0
LYD3_k127_2008187_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 484.0
LYD3_k127_2008187_2 secretion protein HlyD family K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 455.0
LYD3_k127_2008187_3 COG1538 Outer membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 449.0
LYD3_k127_2008187_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000011 275.0
LYD3_k127_2008187_5 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000002241 178.0
LYD3_k127_2008187_6 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000008654 145.0
LYD3_k127_2008187_7 - - - - 0.000000000000003308 80.0
LYD3_k127_2012426_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 1.159e-204 653.0
LYD3_k127_2012426_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 306.0
LYD3_k127_2012426_2 PFAM 20S proteasome, A and B subunits K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000001407 256.0
LYD3_k127_2012426_3 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000001557 241.0
LYD3_k127_2012426_4 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.0000000000000000000000000000000000000000000000001096 179.0
LYD3_k127_2012426_5 transcriptional regulator K07734 - - 0.000000000000000000000000000000000000000000002086 183.0
LYD3_k127_2012426_6 B12 binding domain K22491 - - 0.000000000000000000000000000000000000000000459 170.0
LYD3_k127_2012426_7 Belongs to the HSP15 family K04762 - - 0.00000000000000000000000172 111.0
LYD3_k127_2015706_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 539.0
LYD3_k127_2015706_1 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000007976 48.0
LYD3_k127_2023523_0 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005846 486.0
LYD3_k127_2023523_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006786 362.0
LYD3_k127_2023523_2 epimerase dehydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 314.0
LYD3_k127_2023523_3 glycosylase K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000005713 188.0
LYD3_k127_2023523_4 HemY domain protein K02498 - - 0.00000000001504 66.0
LYD3_k127_2025277_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 613.0
LYD3_k127_2025277_1 surface antigen variable number repeat protein K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 574.0
LYD3_k127_2025277_2 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 393.0
LYD3_k127_2025277_3 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000005166 135.0
LYD3_k127_2025277_4 membrane - - - 0.000000000000000000000003662 107.0
LYD3_k127_2025277_5 Cupin 2, conserved barrel - - - 0.00000000000001905 74.0
LYD3_k127_2025753_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 1.145e-199 628.0
LYD3_k127_2025753_1 branched-chain amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007293 567.0
LYD3_k127_2025753_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 556.0
LYD3_k127_2025753_3 Beta/gamma crystallins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 321.0
LYD3_k127_2025753_4 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000001949 204.0
LYD3_k127_2025753_5 Ion transport protein - - - 0.00000000000000000000000000000000000000000004878 174.0
LYD3_k127_2025753_6 Bacterioferritin (cytochrome b1) K03594 - 1.16.3.1 0.0000000000000001806 87.0
LYD3_k127_2025753_7 - - - - 0.0000000000000147 80.0
LYD3_k127_2028933_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 577.0
LYD3_k127_2028933_1 benzoyl-CoA reductase K04113 - 1.3.7.8 0.000000000000000000000000000000000002707 140.0
LYD3_k127_2028933_2 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000008333 139.0
LYD3_k127_2029396_0 Aminotransferase K14261 - - 2.095e-211 662.0
LYD3_k127_2029396_1 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 403.0
LYD3_k127_2029396_2 DegT/DnrJ/EryC1/StrS aminotransferase family K14260 - 2.6.1.2,2.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 395.0
LYD3_k127_2029396_3 ABC-type multidrug transport system ATPase component K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 327.0
LYD3_k127_2029396_4 ABC-2 type transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 317.0
LYD3_k127_2029396_5 Protein of unknown function (DUF498/DUF598) - - - 0.00000000000000000000000000001045 121.0
LYD3_k127_2031924_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 6.269e-285 894.0
LYD3_k127_2031924_1 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 531.0
LYD3_k127_2031924_2 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 326.0
LYD3_k127_2031924_3 PFAM conserved K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 285.0
LYD3_k127_2031924_4 Protein of unknown function (DUF2782) - - - 0.0000000000000000000001279 101.0
LYD3_k127_2031924_5 - - - - 0.00000000000004008 85.0
LYD3_k127_2040560_0 Transport of potassium into the cell K03549 - - 1.505e-252 794.0
LYD3_k127_2040560_1 Domain of unknown function (DUF4118) K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 586.0
LYD3_k127_2040560_2 CAAX prenyl protease N-terminal, five membrane helices K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 471.0
LYD3_k127_2040560_3 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004831 335.0
LYD3_k127_2040560_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000006264 270.0
LYD3_k127_2040560_5 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000001822 119.0
LYD3_k127_2040560_6 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.0000000000000000000000000004263 123.0
LYD3_k127_2040560_7 Cytochrome c - - - 0.0000000000000000000008993 100.0
LYD3_k127_2045082_0 COG0436 Aspartate tyrosine aromatic aminotransferase K14287 - 2.6.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 408.0
LYD3_k127_2045082_1 dienelactone hydrolase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000009281 263.0
LYD3_k127_2045082_2 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000009494 256.0
LYD3_k127_2045082_3 ABC transporter K15738 - - 0.000000237 53.0
LYD3_k127_2045912_0 Aldo/keto reductase family K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008284 428.0
LYD3_k127_2045912_1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 378.0
LYD3_k127_2045912_2 Xylose isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006813 347.0
LYD3_k127_2045912_3 Aldehyde dehydrogenase family K04072,K13922 - 1.1.1.1,1.2.1.10,1.2.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
LYD3_k127_2045912_4 helix_turn_helix isocitrate lyase regulation K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000000007449 245.0
LYD3_k127_2045912_5 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000000000001624 218.0
LYD3_k127_2045912_6 PFAM 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000003356 87.0
LYD3_k127_2047225_0 fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 538.0
LYD3_k127_2047225_1 Fumarylacetoacetate (FAA) hydrolase family - - - 0.0000000000000000000000000000000000000000000000002372 182.0
LYD3_k127_2056406_0 Protein of unknown function (DUF1329) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 573.0
LYD3_k127_2056406_1 Protein of unknown function (DUF1302) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 548.0
LYD3_k127_2056406_2 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004827 334.0
LYD3_k127_2056406_3 Transcriptional regulator K04033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006926 292.0
LYD3_k127_2056406_4 exporters of the RND superfamily K07003 - - 0.00000000000000000000000000000000000000000000000000000239 196.0
LYD3_k127_2056406_5 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.0000000000000000000137 93.0
LYD3_k127_2057236_0 Respiratory nitrate reductase alpha N-terminal K00370 - 1.7.5.1 2.679e-195 610.0
LYD3_k127_2057236_1 nitrite transmembrane transporter activity K02575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008194 521.0
LYD3_k127_2065451_0 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 605.0
LYD3_k127_2065451_1 Major facilitator superfamily K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 540.0
LYD3_k127_2065451_2 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001687 260.0
LYD3_k127_2065451_3 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.000000000009721 65.0
LYD3_k127_2069392_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 601.0
LYD3_k127_2069392_1 - - - - 0.000000000000000000299 95.0
LYD3_k127_2069392_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.0000000000000000009435 88.0
LYD3_k127_2069392_3 Domain of unknown function (DUF1840) - - - 0.000000000000000004677 87.0
LYD3_k127_2080193_0 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005999 475.0
LYD3_k127_2080193_1 dksA traR - - - 0.000000000000000001609 95.0
LYD3_k127_2080193_2 Hsp20/alpha crystallin family - - - 0.00000000000002194 83.0
LYD3_k127_2081814_0 Aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 5.007e-208 652.0
LYD3_k127_2081814_1 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000004836 207.0
LYD3_k127_2082064_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 1.5e-204 642.0
LYD3_k127_2082064_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000002292 206.0
LYD3_k127_2082064_2 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00000000000000000000000000000000000000000000000000002798 196.0
LYD3_k127_2082064_3 Cell wall formation K01921 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008716,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.4 0.000000000000000001054 86.0
LYD3_k127_2097337_0 Aminotransferase class I and II K11358 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 486.0
LYD3_k127_2097337_1 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 457.0
LYD3_k127_2104897_0 Natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003829 451.0
LYD3_k127_2105195_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 336.0
LYD3_k127_2105195_1 maleate cis-trans isomerase K01799 - 5.2.1.1 0.0000000000000000000000000000001328 135.0
LYD3_k127_2105195_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000693 120.0
LYD3_k127_2108357_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 399.0
LYD3_k127_2108357_1 protein histidine kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 308.0
LYD3_k127_2108357_2 PFAM Oxidoreductase FAD NAD(P)-binding - - - 0.00000000000000000003323 93.0
LYD3_k127_2123722_0 elongation factor G K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004245 365.0
LYD3_k127_2123722_1 Histidine Phosphotransfer domain K02487,K06596 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002246 287.0
LYD3_k127_2131498_0 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003592 321.0
LYD3_k127_2131498_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004565 275.0
LYD3_k127_2131498_2 TIGRFAM TonB family protein K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005748 265.0
LYD3_k127_2131498_3 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000006357 164.0
LYD3_k127_2131498_4 ribonuclease II K01147 - 3.1.13.1 0.0000000000001108 72.0
LYD3_k127_2131863_0 Required for chromosome condensation and partitioning K03529 - - 7.313e-291 939.0
LYD3_k127_2131863_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 1.704e-265 833.0
LYD3_k127_2131863_10 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007354 439.0
LYD3_k127_2131863_11 Belongs to the ABC transporter superfamily K12372 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 442.0
LYD3_k127_2131863_12 N-terminal TM domain of oligopeptide transport permease C K02034,K12370 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 422.0
LYD3_k127_2131863_13 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 409.0
LYD3_k127_2131863_14 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006861 398.0
LYD3_k127_2131863_15 Transcriptional regulator, LysR family K04761 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009532 355.0
LYD3_k127_2131863_16 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004902 285.0
LYD3_k127_2131863_17 MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000000000000000000000000000000004922 209.0
LYD3_k127_2131863_18 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.000000000000000000000000000000000000000000006758 180.0
LYD3_k127_2131863_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K12368 - - 8.227e-256 803.0
LYD3_k127_2131863_3 PFAM extracellular solute-binding protein, family 5 K02035 - - 8.084e-248 775.0
LYD3_k127_2131863_4 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 538.0
LYD3_k127_2131863_5 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 503.0
LYD3_k127_2131863_6 Oligopeptide/dipeptide transporter, C-terminal region K02031,K12371 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 499.0
LYD3_k127_2131863_7 Binding-protein-dependent transport system inner membrane component K12369 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 482.0
LYD3_k127_2131863_8 ABC-type dipeptide oligopeptide nickel transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 473.0
LYD3_k127_2131863_9 Belongs to the ABC transporter superfamily K02032,K12372 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 452.0
LYD3_k127_2138314_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 1474.0
LYD3_k127_2151877_0 Helicase K03722 - 3.6.4.12 1.339e-244 771.0
LYD3_k127_2151877_1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 570.0
LYD3_k127_2151877_10 ZIP Zinc transporter K16267 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003547 265.0
LYD3_k127_2151877_11 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000008949 250.0
LYD3_k127_2151877_12 p-type atpase - - - 0.00000000000000000000000000000000000000000000000000000000000000004455 231.0
LYD3_k127_2151877_13 - - - - 0.000000000000000000004861 103.0
LYD3_k127_2151877_14 fibroblast growth factor binding - - - 0.0000000009729 72.0
LYD3_k127_2151877_2 regulation of DNA-templated transcription, elongation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008232 466.0
LYD3_k127_2151877_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 427.0
LYD3_k127_2151877_4 PFAM ATP-binding region ATPase domain protein K07645 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007933 432.0
LYD3_k127_2151877_5 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 407.0
LYD3_k127_2151877_6 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 377.0
LYD3_k127_2151877_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 312.0
LYD3_k127_2151877_8 MOSC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009142 309.0
LYD3_k127_2151877_9 PFAM response regulator receiver K02483,K07666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009138 297.0
LYD3_k127_2155736_0 glutamine synthetase K01915 - 6.3.1.2 4.67e-258 801.0
LYD3_k127_2155736_1 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 380.0
LYD3_k127_2155736_2 PFAM Carbamoyl-phosphate synthase L chain ATP-binding K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 344.0
LYD3_k127_2155736_3 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003967 314.0
LYD3_k127_2155736_4 Sigma-54 interaction domain K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 289.0
LYD3_k127_2155736_5 TIGRFAM MJ0042 family finger-like protein - - - 0.0000000000000000000000000000000000000003715 160.0
LYD3_k127_2155736_6 - - - - 0.0000000000000003168 86.0
LYD3_k127_2160901_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003846 482.0
LYD3_k127_2160901_1 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000000000000000000165 190.0
LYD3_k127_2160901_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.00000000000000000000000000001502 119.0
LYD3_k127_2160901_3 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000001581 94.0
LYD3_k127_2165684_0 FAD linked oxidases, C-terminal domain - - - 0.0 1319.0
LYD3_k127_2165684_1 formate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 308.0
LYD3_k127_2165684_2 denitrification pathway - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001148 273.0
LYD3_k127_2165684_3 - - - - 0.0000000000000000000000000000000000000000000365 171.0
LYD3_k127_2165684_4 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000002773 85.0
LYD3_k127_217016_0 COG0524 Sugar kinases, ribokinase family K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000838 407.0
LYD3_k127_217016_1 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 332.0
LYD3_k127_217016_2 response regulator K08083 - - 0.0000000000000000000000000000000000000000837 154.0
LYD3_k127_217016_3 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656,K03657 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044786,GO:0044787,GO:0046483,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.000000000000000000000246 102.0
LYD3_k127_2173056_0 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 396.0
LYD3_k127_2173056_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 303.0
LYD3_k127_2173056_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.0000000000000000000000000000000000000000000000006358 181.0
LYD3_k127_2173056_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000001063 173.0
LYD3_k127_2173056_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000000001045 150.0
LYD3_k127_2173056_5 ATP synthase I chain K02116 - - 0.0000005461 53.0
LYD3_k127_2176006_0 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 572.0
LYD3_k127_2176006_1 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 468.0
LYD3_k127_2176006_2 Multicopper oxidase K20219 - 1.10.3.4 0.000000000000000000000000000000000000000000000000000003432 202.0
LYD3_k127_2176006_3 KR domain - - - 0.00000000000000000000000585 106.0
LYD3_k127_2176006_4 radical SAM domain protein - - - 0.00000001634 57.0
LYD3_k127_2185647_0 Glycolate oxidase subunit GlcD K00104 - 1.1.3.15 5.104e-223 700.0
LYD3_k127_2185647_1 FAD linked oxidases, C-terminal domain K00102 - 1.1.2.4 7.099e-195 618.0
LYD3_k127_2185647_2 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 472.0
LYD3_k127_2185647_3 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000002208 228.0
LYD3_k127_2185647_4 FAD binding domain K11472 - - 0.00000000000000000000000005325 111.0
LYD3_k127_2185647_5 Trap dicarboxylate transporter, dctm subunit - - - 0.00000000000006467 72.0
LYD3_k127_2189069_0 Cytochrome b(N-terminal)/b6/petB - - - 7.535e-239 756.0
LYD3_k127_2189069_1 - - - - 0.00000000000000000000000000000001175 135.0
LYD3_k127_2200472_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006468 490.0
LYD3_k127_2200472_1 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 317.0
LYD3_k127_2200472_2 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004308 269.0
LYD3_k127_2200472_3 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000003141 246.0
LYD3_k127_2200472_4 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000001308 214.0
LYD3_k127_2200472_5 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000005473 96.0
LYD3_k127_2206978_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 1.413e-296 937.0
LYD3_k127_2206978_1 Branched-chain amino acid transport system / permease component K01997,K01998 - - 3.973e-211 672.0
LYD3_k127_2206978_2 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008736 576.0
LYD3_k127_2206978_3 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS - - - 0.000000000000000000000000000000000000000000000000000000001743 209.0
LYD3_k127_2214869_0 ABC transporter K02056 - 3.6.3.17 1.201e-208 659.0
LYD3_k127_2214869_1 XdhC Rossmann domain K07402 - - 0.00000000000000000000000000005784 119.0
LYD3_k127_2216514_0 ATPases associated with a variety of cellular activities K06147 - - 9.629e-213 669.0
LYD3_k127_2216514_1 Cache domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 530.0
LYD3_k127_2216514_2 Belongs to the class I fructose-bisphosphate aldolase family K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 449.0
LYD3_k127_2216514_3 Trypsin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 350.0
LYD3_k127_2216514_4 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004647 261.0
LYD3_k127_2216514_5 PFAM SH3, type 3 - - - 0.0000000000000000000000000007333 126.0
LYD3_k127_2216514_6 TIGRFAM TIGR00268 family protein K06864 - - 0.000000000000000000000000004236 116.0
LYD3_k127_2217521_0 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 380.0
LYD3_k127_2217521_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002156 279.0
LYD3_k127_2220711_0 protein involved in outer membrane biogenesis K07290 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 327.0
LYD3_k127_224756_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 2.134e-220 699.0
LYD3_k127_2258333_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 493.0
LYD3_k127_2258333_1 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009117,GO:0009150,GO:0009259,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019442,GO:0019637,GO:0019693,GO:0019752,GO:0020037,GO:0022607,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043603,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051186,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 387.0
LYD3_k127_2258333_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002465 293.0
LYD3_k127_2258333_3 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008794 296.0
LYD3_k127_2258333_4 abc transporter atp-binding protein K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000199 296.0
LYD3_k127_2258333_5 sodium ABC transporter, permease K09696 - - 0.000000000000000000000000000000000000000000000000000000000000000804 237.0
LYD3_k127_2260990_0 sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 508.0
LYD3_k127_2260990_1 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 512.0
LYD3_k127_2260990_2 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008365 320.0
LYD3_k127_2260990_3 ABC transporter, substrate-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000002803 213.0
LYD3_k127_2261833_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000008798 192.0
LYD3_k127_2261833_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.000000000000000000000000000000000000000000000000001173 184.0
LYD3_k127_2261833_3 - - - - 0.000000000005811 68.0
LYD3_k127_2261833_4 NADH flavin oxidoreductase NADH oxidase - - - 0.000000000009296 70.0
LYD3_k127_2261833_5 NADH:flavin oxidoreductase / NADH oxidase family K00354 - 1.6.99.1 0.0000001368 61.0
LYD3_k127_2264670_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 529.0
LYD3_k127_2264670_1 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 351.0
LYD3_k127_2264670_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000000001627 243.0
LYD3_k127_2264670_3 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly K13643 - - 0.000000000000000000000000000000000000000000000000000000000009318 213.0
LYD3_k127_2264670_4 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000001242 152.0
LYD3_k127_2264670_5 - - - - 0.0000000000000000203 88.0
LYD3_k127_2301198_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 536.0
LYD3_k127_2301198_1 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 504.0
LYD3_k127_2301198_2 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 464.0
LYD3_k127_2301198_3 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 366.0
LYD3_k127_2301198_4 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000001755 205.0
LYD3_k127_2301198_5 - - - - 0.000000000000001154 83.0
LYD3_k127_231583_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 573.0
LYD3_k127_231583_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000001406 265.0
LYD3_k127_231583_2 - - - - 0.00000000000000000000000000000000000000000000000000000953 202.0
LYD3_k127_231583_3 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000005568 187.0
LYD3_k127_231583_4 - - - - 0.000000000000000000000000004178 128.0
LYD3_k127_231583_5 - - - - 0.0000000000003157 78.0
LYD3_k127_2319088_0 Cytochrome c554 and c-prime - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007743 617.0
LYD3_k127_2319088_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 315.0
LYD3_k127_2342655_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 482.0
LYD3_k127_2342655_1 PFAM LrgB family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000192 275.0
LYD3_k127_2342655_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005849 282.0
LYD3_k127_2342655_3 Cytochrome B561 K12262 - - 0.00000000000000000000000000000000000000000000000000000004656 201.0
LYD3_k127_2342655_4 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000001198 192.0
LYD3_k127_2342655_5 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000009983 155.0
LYD3_k127_2342655_6 PFAM LrgA K06518 - - 0.000000000000000000000000000005092 127.0
LYD3_k127_2342655_7 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.264 0.0000000000000002073 80.0
LYD3_k127_2358322_0 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 598.0
LYD3_k127_2358322_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002567 554.0
LYD3_k127_2358322_2 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000254 203.0
LYD3_k127_2358322_3 GntR family - - - 0.000000000000000001254 91.0
LYD3_k127_2359133_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 1027.0
LYD3_k127_2361589_0 Belongs to the ABC transporter superfamily K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000983 518.0
LYD3_k127_2361589_1 Belongs to the IlvD Edd family K13875 - 4.2.1.25 0.000000000000000000003737 94.0
LYD3_k127_2361589_2 dehydratase K01685,K01708,K16846 - 4.2.1.42,4.2.1.7,4.4.1.24 0.000000000001156 67.0
LYD3_k127_23622_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.768e-296 928.0
LYD3_k127_23622_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.172e-203 649.0
LYD3_k127_23622_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 7.563e-194 610.0
LYD3_k127_23622_3 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 537.0
LYD3_k127_23622_4 catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 289.0
LYD3_k127_23622_5 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.00000000000000000000000000001904 125.0
LYD3_k127_23622_6 FR47-like protein - - - 0.000000000000000006397 93.0
LYD3_k127_2367430_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K18005 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 9.568e-218 685.0
LYD3_k127_237281_0 M61 glycyl aminopeptidase - - - 1.311e-220 707.0
LYD3_k127_237281_1 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000007817 197.0
LYD3_k127_237281_2 Helix-turn-helix - - - 0.00000000000000000000000000000000006494 140.0
LYD3_k127_237281_3 Phospholipid-binding protein K06910 - - 0.000000000000000000000000001764 111.0
LYD3_k127_2432573_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 1.16e-244 762.0
LYD3_k127_2432573_1 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000000000000000003473 117.0
LYD3_k127_248000_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 2.431e-227 720.0
LYD3_k127_2484515_0 Dihydrodipicolinate synthetase family K01714,K13876 - 4.2.1.43,4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 478.0
LYD3_k127_2484515_1 Protein of unknown function (DUF2868) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006367 245.0
LYD3_k127_2484515_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000003064 200.0
LYD3_k127_252321_0 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 388.0
LYD3_k127_252321_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000887 368.0
LYD3_k127_252321_2 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000006889 184.0
LYD3_k127_264956_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 319.0
LYD3_k127_264956_1 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000003154 152.0
LYD3_k127_264956_2 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000004349 130.0
LYD3_k127_264956_3 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0003912 43.0
LYD3_k127_2678478_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 6.154e-241 758.0
LYD3_k127_2678478_1 Belongs to the aldehyde dehydrogenase family K00128,K00154 - 1.2.1.3,1.2.1.68 3.389e-212 670.0
LYD3_k127_2678478_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000000000000002168 175.0
LYD3_k127_2678478_11 Glycine-zipper domain - - - 0.0000000000000000000000000000000000000002181 156.0
LYD3_k127_2678478_12 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000000005092 139.0
LYD3_k127_2678478_13 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.000000000000000000000000000001013 131.0
LYD3_k127_2678478_14 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000004591 89.0
LYD3_k127_2678478_15 Belongs to the hyi family K22131 - 5.3.1.35 0.00000000000000005448 80.0
LYD3_k127_2678478_16 - - - - 0.00000000000005075 81.0
LYD3_k127_2678478_17 - - - - 0.0003166 44.0
LYD3_k127_2678478_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 2.695e-205 650.0
LYD3_k127_2678478_3 glycosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 557.0
LYD3_k127_2678478_4 Radical SAM superfamily K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 556.0
LYD3_k127_2678478_5 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006083 381.0
LYD3_k127_2678478_6 Permease, YjgP YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 346.0
LYD3_k127_2678478_7 Permease, YjgP YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009912 308.0
LYD3_k127_2678478_8 PFAM alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002777 292.0
LYD3_k127_2678478_9 Nucleoside-diphosphate-sugar epimerases - - - 0.0000000000000000000000000000000000000000000000000002079 200.0
LYD3_k127_269233_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 525.0
LYD3_k127_269233_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005698 398.0
LYD3_k127_269233_2 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 334.0
LYD3_k127_2692773_0 cobalamin biosynthetic process K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 325.0
LYD3_k127_2692773_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000568 265.0
LYD3_k127_2699269_0 Belongs to the ABC transporter superfamily K02031,K02032,K13892 - - 8.958e-280 874.0
LYD3_k127_2699269_1 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 530.0
LYD3_k127_2699269_2 ABC-type dipeptide transport system, periplasmic K02035,K13889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 423.0
LYD3_k127_2699269_3 protein synthesis factor, GTP-binding K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000002707 237.0
LYD3_k127_2700729_0 PFAM RES domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005959 264.0
LYD3_k127_2700729_1 COG1132 ABC-type multidrug transport system, ATPase and permease components K18893 - - 0.00000000000000000000000000000000000000000000000000005047 190.0
LYD3_k127_2700729_2 Protein of unknown function (DUF2384) - - - 0.000000000000000000000000000000000000000000000002312 177.0
LYD3_k127_2700729_3 AI-2E family transporter - - - 0.000000000000000000000000000000000000001649 161.0
LYD3_k127_2700729_4 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000001956 147.0
LYD3_k127_2702409_0 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009891 488.0
LYD3_k127_2702409_1 PFAM 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 381.0
LYD3_k127_2702409_2 ABC transporter K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 336.0
LYD3_k127_2702409_3 amino acid ABC transporter K02029,K10009 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 287.0
LYD3_k127_2702409_4 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000964 294.0
LYD3_k127_2702409_5 Thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000006614 233.0
LYD3_k127_2710816_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.402e-215 707.0
LYD3_k127_2710816_1 Glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 543.0
LYD3_k127_2710816_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009012 400.0
LYD3_k127_2710816_3 CBS domain protein K06189 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319 310.0
LYD3_k127_2710816_4 TIGRFAM histidinol-phosphate phosphatase family protein K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000001128 267.0
LYD3_k127_2710816_5 Acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000005563 247.0
LYD3_k127_2710816_6 Protein of unknown function DUF45 K07043 - - 0.0000000004554 70.0
LYD3_k127_2718891_0 Outer membrane protein transport protein, Ompp1 FadL TodX K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 598.0
LYD3_k127_2718891_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 532.0
LYD3_k127_2718891_10 Protein of unknown function (DUF3301) - - - 0.0000000000000000000001867 100.0
LYD3_k127_2718891_11 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.0000000000001523 74.0
LYD3_k127_2718891_12 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000001561 79.0
LYD3_k127_2718891_13 - - - - 0.0000000002007 70.0
LYD3_k127_2718891_14 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs - - - 0.000000001158 59.0
LYD3_k127_2718891_15 Protein involved in meta-pathway of phenol degradation - - - 0.00007327 51.0
LYD3_k127_2718891_16 K COG2207 AraC-type DNA-binding domain-containing proteins - - - 0.0001945 46.0
LYD3_k127_2718891_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002491 526.0
LYD3_k127_2718891_3 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 351.0
LYD3_k127_2718891_4 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001704 291.0
LYD3_k127_2718891_5 Adenylate guanylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000002554 182.0
LYD3_k127_2718891_6 DsrE/DsrF-like family - - - 0.00000000000000000000000000000000000000006116 164.0
LYD3_k127_2718891_7 Psort location Extracellular, score K07126 - - 0.000000000000000000000000000000000006464 144.0
LYD3_k127_2718891_8 protein import - - - 0.000000000000000000000000000108 130.0
LYD3_k127_2718891_9 Beta/Gamma crystallin - - - 0.0000000000000000000000000002526 126.0
LYD3_k127_2721124_0 DNA polymerase Ligase (LigD) K01971 - 6.5.1.1 9.037e-247 789.0
LYD3_k127_2721124_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005867 312.0
LYD3_k127_2721124_2 - - - - 0.00000000000009661 76.0
LYD3_k127_2721476_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 5.769e-291 903.0
LYD3_k127_2721476_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II - - - 5.342e-214 677.0
LYD3_k127_2721476_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000002683 255.0
LYD3_k127_2721476_3 PFAM integrase family protein - - - 0.00000000000000000000000000000000005008 136.0
LYD3_k127_2721476_4 protein N-acetylglucosaminyltransferase activity - - - 0.000000000000000000000000000000004542 136.0
LYD3_k127_2721476_5 Bacterial extracellular solute-binding protein - - - 0.000000000000000000001491 108.0
LYD3_k127_2729691_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 4.108e-315 974.0
LYD3_k127_2729691_1 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005588 558.0
LYD3_k127_2729691_2 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 346.0
LYD3_k127_2729691_3 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 326.0
LYD3_k127_2729691_4 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003177 319.0
LYD3_k127_2729691_5 pfkB family carbohydrate kinase K00852,K18478 - 2.7.1.15,2.7.1.184 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 293.0
LYD3_k127_2729691_6 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000002655 266.0
LYD3_k127_2729691_7 rRNA small subunit methyltransferase G K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000000000000000006059 220.0
LYD3_k127_2729691_8 ThiS family K03636 - - 0.000000000000000273 85.0
LYD3_k127_2729691_9 ATP synthase I chain K02116 - - 0.00002221 51.0
LYD3_k127_2730098_0 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000004081 248.0
LYD3_k127_2730098_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000007659 145.0
LYD3_k127_2730098_2 Amidohydrolase family - - - 0.000000003018 58.0
LYD3_k127_2730579_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1720.0
LYD3_k127_2730579_1 PFAM Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 490.0
LYD3_k127_2730579_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 377.0
LYD3_k127_2730579_3 Protein of unknown function (DUF2892) - - - 0.0000000000000000000000000001256 124.0
LYD3_k127_2737283_0 Peptidase U32 K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 496.0
LYD3_k127_2737283_1 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 375.0
LYD3_k127_2737283_2 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000006416 241.0
LYD3_k127_2737283_3 SCP-2 sterol transfer family - - - 0.00000000000000000000003512 106.0
LYD3_k127_2737283_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000006478 101.0
LYD3_k127_2738032_0 Disulphide bond corrector protein DsbC K04084,K08344 - 1.8.1.8 6.42e-204 648.0
LYD3_k127_2738032_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 291.0
LYD3_k127_2738032_2 Uncharacterized protein family UPF0016 - - - 0.0000000000000000000000000000000000000000000000000000000000000003733 226.0
LYD3_k127_2741903_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 456.0
LYD3_k127_2741903_1 recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 359.0
LYD3_k127_2741903_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000004414 226.0
LYD3_k127_2741903_3 PFAM Methylated-DNA- protein -cysteine S-methyltransferase, DNA binding K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000001335 165.0
LYD3_k127_2741903_4 Aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000000267 126.0
LYD3_k127_2741903_5 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000003099 79.0
LYD3_k127_274804_0 denitrification pathway K15876 GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005446 272.0
LYD3_k127_274804_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000002578 141.0
LYD3_k127_2752497_0 TIGRFAM malate synthase A K01638 - 2.3.3.9 4.681e-235 734.0
LYD3_k127_2752497_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 GO:0000287,GO:0003674,GO:0003824,GO:0003852,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0019752,GO:0030145,GO:0030955,GO:0031420,GO:0040007,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046872,GO:0046912,GO:0046914,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.3.13 1.03e-227 718.0
LYD3_k127_2752497_10 GtrA-like protein - - - 0.00000000000000000003115 98.0
LYD3_k127_2752497_2 choline dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 475.0
LYD3_k127_2752497_3 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005948 452.0
LYD3_k127_2752497_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 427.0
LYD3_k127_2752497_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000979 331.0
LYD3_k127_2752497_6 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 329.0
LYD3_k127_2752497_7 epimerase K10714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 316.0
LYD3_k127_2752497_8 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 298.0
LYD3_k127_2752497_9 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000000000000000000000000003239 213.0
LYD3_k127_276149_0 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 409.0
LYD3_k127_276149_1 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004059 376.0
LYD3_k127_276149_2 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852 - 2.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000001265 261.0
LYD3_k127_276149_3 SpoU rRNA Methylase family K03437 - - 0.0000000000000007663 79.0
LYD3_k127_2768770_0 D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 3.603e-275 865.0
LYD3_k127_2768770_1 PFAM Glycoside hydrolase 15-related - - - 2.527e-261 819.0
LYD3_k127_2768770_2 Belongs to the glutaminase family K01425 - 3.5.1.2 8.537e-246 773.0
LYD3_k127_2768770_3 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000002744 152.0
LYD3_k127_2770851_0 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 462.0
LYD3_k127_2770851_1 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 413.0
LYD3_k127_2770851_2 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007162 287.0
LYD3_k127_2770851_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000121 265.0
LYD3_k127_2770851_4 PFAM thioesterase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000007927 226.0
LYD3_k127_2770851_5 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.00000000000000000000000000000000002696 135.0
LYD3_k127_2770851_6 GYD domain - - - 0.000000000000000000000000002263 114.0
LYD3_k127_2775168_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1244.0
LYD3_k127_2775168_1 Phenylacetic acid degradation protein PaaY K02617,K08279 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.0000000000000000000000000000000000000000000000000000000006766 205.0
LYD3_k127_2776378_0 Von Willebrand factor A K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 539.0
LYD3_k127_2776378_1 ATPase (AAA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 492.0
LYD3_k127_2776378_2 Belongs to the glycosyl hydrolase 31 family K01811 GO:0003674,GO:0003824,GO:0004553,GO:0005488,GO:0005515,GO:0016787,GO:0016798,GO:0042802,GO:0080176 3.2.1.177 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 479.0
LYD3_k127_2776378_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005402 290.0
LYD3_k127_2776378_4 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000005276 232.0
LYD3_k127_2776378_5 AzlC protein - - - 0.00000000000000000000000000000000000000000000000001297 189.0
LYD3_k127_2776378_6 Transcriptional regulator K07722 - - 0.0000000000000000000000000000000000000000000000000848 183.0
LYD3_k127_2776378_7 Branched-chain amino acid transport protein (AzlD) - - - 0.000000000000000358 90.0
LYD3_k127_2778968_0 Enoyl-CoA hydratase/isomerase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 357.0
LYD3_k127_2778968_1 Protein of unknown function (DUF2721) - - - 0.0000000000000000000000000001155 123.0
LYD3_k127_2778968_2 Histone methylation protein DOT1 - - - 0.000005702 51.0
LYD3_k127_2778968_3 - - - - 0.000008183 49.0
LYD3_k127_2782503_0 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 464.0
LYD3_k127_2782503_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002155 271.0
LYD3_k127_2782503_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000001446 127.0
LYD3_k127_2782503_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000319 120.0
LYD3_k127_2782503_4 Lipopolysaccharide assembly protein A domain K08992 - - 0.000001017 58.0
LYD3_k127_2788504_0 serine protease K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 488.0
LYD3_k127_2788504_1 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001798 252.0
LYD3_k127_2788504_2 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000001223 133.0
LYD3_k127_2791529_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.871e-200 630.0
LYD3_k127_2791529_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 563.0
LYD3_k127_2791529_2 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000006597 158.0
LYD3_k127_2801654_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 9.094e-229 715.0
LYD3_k127_2801654_1 Cys/Met metabolism PLP-dependent enzyme K01760 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 377.0
LYD3_k127_2801654_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000003734 218.0
LYD3_k127_2801654_3 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000009521 170.0
LYD3_k127_2801654_4 Shikimate kinase K00851 - 2.7.1.12 0.0000000000000000000000000000000000000000001489 177.0
LYD3_k127_2801654_5 - - - - 0.0000000000003793 78.0
LYD3_k127_2804643_2 - - - - 0.000000000000000000000000000000000000000000000001217 178.0
LYD3_k127_2806923_0 N-terminal domain of (some) glycogen debranching enzymes - - - 2.305e-269 848.0
LYD3_k127_2806923_1 PFAM glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 500.0
LYD3_k127_2806923_2 PFAM PRC-barrel domain protein - - - 0.00000000000000000000000000000000000000002905 154.0
LYD3_k127_2806923_3 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000762 140.0
LYD3_k127_2808786_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 361.0
LYD3_k127_2808786_1 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000000007205 181.0
LYD3_k127_2808786_2 NlpC/P60 family K13695,K19303 - - 0.00000000000000000000000000000000000000000000001859 177.0
LYD3_k127_2808786_3 PilZ domain K02676 - - 0.0000000000000000000000000000000000000000001329 162.0
LYD3_k127_2808786_4 Ankyrin repeat K06867 - - 0.0000000000000000000000000000000000000001084 161.0
LYD3_k127_2808786_5 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000137 88.0
LYD3_k127_2808786_6 Belongs to the UPF0125 (RnfH) family K09801 - - 0.0000000000007855 78.0
LYD3_k127_2808786_7 DNA polymerase III, delta K02341 - 2.7.7.7 0.00000005864 59.0
LYD3_k127_2829313_0 Branched-chain amino acid transport system / permease component K11961 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 449.0
LYD3_k127_2829313_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005548 429.0
LYD3_k127_2829313_2 Urea ABC transporter ATP-binding protein K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 400.0
LYD3_k127_2829313_3 ABC transporter, ATP-binding protein K11963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 349.0
LYD3_k127_2833670_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 2.787e-270 837.0
LYD3_k127_2833670_1 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003511 284.0
LYD3_k127_2833670_2 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001007 247.0
LYD3_k127_2833670_3 Belongs to the GcvT family K06980 - - 0.0000000000000000000000000000000000000000000000000000000000000000004806 239.0
LYD3_k127_2833670_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000000000000000000000001535 213.0
LYD3_k127_2833670_5 Endoribonuclease L-PSP K04782 - 4.2.99.21 0.00000000000000000000000000000000000000000003814 177.0
LYD3_k127_2833670_6 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000004272 156.0
LYD3_k127_2836726_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 460.0
LYD3_k127_2836726_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 430.0
LYD3_k127_2836726_10 Bacterial periplasmic substrate-binding proteins K02030,K10001 - - 0.0000000000000000000001754 107.0
LYD3_k127_2836726_11 - - - - 0.00000000000000005529 86.0
LYD3_k127_2836726_12 OmpA-like transmembrane domain - - - 0.000003636 59.0
LYD3_k127_2836726_2 PFAM PfkB domain protein K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000349 342.0
LYD3_k127_2836726_3 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.00000000000000000000000000000000000000000000000000000000000000000000004915 254.0
LYD3_k127_2836726_4 Aldolase K01631 - 4.1.2.21 0.000000000000000000000000000000000000000000000000000000000000000000004429 240.0
LYD3_k127_2836726_5 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000000000000000008102 234.0
LYD3_k127_2836726_6 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000001693 180.0
LYD3_k127_2836726_7 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000000000000000000005728 156.0
LYD3_k127_2836726_8 Uncharacterized ACR, COG1993 - - - 0.00000000000000000000000000000004697 130.0
LYD3_k127_2836726_9 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000000000000001998 102.0
LYD3_k127_2848071_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 408.0
LYD3_k127_2848071_1 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001173 311.0
LYD3_k127_2848071_2 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000009736 209.0
LYD3_k127_2848071_3 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000002287 203.0
LYD3_k127_2848071_4 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 0.00000000000000000001436 92.0
LYD3_k127_2875887_0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 3.826e-228 714.0
LYD3_k127_2875887_1 sulfite reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 451.0
LYD3_k127_2875887_2 Sulfurtransferase TusA - - - 0.000000000000000000000000000000000000000000000002059 179.0
LYD3_k127_2875887_3 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000003057 160.0
LYD3_k127_2875887_4 Cas6 Crispr - - - 0.0000000000000000000000000000002026 131.0
LYD3_k127_2875887_5 - - - - 0.000000000000000002652 89.0
LYD3_k127_2883143_0 Glycosyltransferase family 20 K00697 - 2.4.1.15,2.4.1.347 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 300.0
LYD3_k127_2883143_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000001326 89.0
LYD3_k127_2883143_2 PFAM response regulator receiver - - - 0.0000000000000002294 84.0
LYD3_k127_288513_0 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000007003 223.0
LYD3_k127_288513_1 YceI-like domain - - - 0.000000000000000000000000000000000000000000000354 186.0
LYD3_k127_288513_2 Transcription factor zinc-finger - - - 0.000000000000000000000000000001723 129.0
LYD3_k127_288513_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000002309 72.0
LYD3_k127_2885552_0 Rieske (2fe-2S) K00479 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001715 259.0
LYD3_k127_2885552_1 Oxidoreductase NAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000002799 213.0
LYD3_k127_2885552_2 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000004098 103.0
LYD3_k127_2885552_3 Iron-containing redox enzyme K06137 - 1.3.3.11 0.00000009906 58.0
LYD3_k127_2885552_4 rhamnose metabolic process - - - 0.00001094 49.0
LYD3_k127_290629_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 512.0
LYD3_k127_290629_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 472.0
LYD3_k127_290629_10 - - - - 0.0000000005667 62.0
LYD3_k127_290629_11 - - - - 0.000002066 54.0
LYD3_k127_290629_2 NUDIX domain K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 377.0
LYD3_k127_290629_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 299.0
LYD3_k127_290629_4 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000003305 266.0
LYD3_k127_290629_5 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000383 187.0
LYD3_k127_290629_6 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000007847 195.0
LYD3_k127_290629_7 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000000000000000001805 182.0
LYD3_k127_290629_8 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000001285 145.0
LYD3_k127_290629_9 Tetratricopeptide repeat - - - 0.0000000000000000000004061 97.0
LYD3_k127_2915092_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 1.718e-207 661.0
LYD3_k127_2915092_1 PFAM Spermine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 295.0
LYD3_k127_2915092_2 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000001758 201.0
LYD3_k127_2915092_3 - - - - 0.0000000000000000000009247 96.0
LYD3_k127_2918849_0 PFAM PHP C-terminal K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000000001776 234.0
LYD3_k127_2918849_1 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000002302 239.0
LYD3_k127_2918849_2 Metal-dependent phosphoesterase K07053,K20859 - 3.1.3.97,3.1.4.57 0.000000000000002215 82.0
LYD3_k127_2928733_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 562.0
LYD3_k127_2928733_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 515.0
LYD3_k127_2928733_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005307 304.0
LYD3_k127_2928733_3 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000007617 235.0
LYD3_k127_2928733_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000006607 51.0
LYD3_k127_2939935_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1564.0
LYD3_k127_2939935_1 Nitrate reductase delta subunit - - - 0.0000000000000000000000000000000000000000000000000821 184.0
LYD3_k127_2939935_2 4Fe-4S ferredoxin, iron-sulfur binding K00124 - - 0.0000000006061 59.0
LYD3_k127_2941834_0 Histidine kinase-like ATPases - - - 3.477e-266 861.0
LYD3_k127_2941834_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 1.798e-257 799.0
LYD3_k127_2941834_2 Oxidoreductase NAD-binding domain K15511 - 1.14.13.208 9.996e-200 628.0
LYD3_k127_2941834_3 Thioredoxin-like K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 401.0
LYD3_k127_2941834_4 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000003706 151.0
LYD3_k127_2941834_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000004849 121.0
LYD3_k127_2941834_6 Invasion gene expression up-regulator, SirB - - - 0.00000000000000000000000000005242 120.0
LYD3_k127_2942867_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 449.0
LYD3_k127_2942867_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000001666 116.0
LYD3_k127_2949685_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 4.294e-205 647.0
LYD3_k127_2949685_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004818 442.0
LYD3_k127_2949685_2 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000001778 228.0
LYD3_k127_2949685_3 Glycosyltransferase like family 2 K20444 - - 0.00000001036 64.0
LYD3_k127_295002_0 ATP-dependent helicase hrpA K03578 - 3.6.4.13 8.526e-310 976.0
LYD3_k127_295002_1 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 604.0
LYD3_k127_2950559_0 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000003633 267.0
LYD3_k127_2950559_1 TraB family K09973 - - 0.000000000000000000000000000000000000000000002627 177.0
LYD3_k127_2950559_2 Amidohydrolase - - - 0.00000000000000000001156 104.0
LYD3_k127_2999699_0 RNB K01147 - 3.1.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009894 597.0
LYD3_k127_3011900_0 ABC transporter C-terminal domain K15738 - - 8.742e-249 782.0
LYD3_k127_3011900_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005854 371.0
LYD3_k127_3011900_2 Predicted methyltransferase regulatory domain - - - 0.0000000000002827 76.0
LYD3_k127_3014966_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 370.0
LYD3_k127_3014966_1 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000002203 214.0
LYD3_k127_3014966_2 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000000000000008321 152.0
LYD3_k127_3019973_0 PFAM extracellular solute-binding protein family 3 K02030,K09969,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000005555 249.0
LYD3_k127_3019973_1 ABC-type amino acid transport signal transduction systems periplasmic component domain K10001 GO:0003333,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0008150,GO:0015711,GO:0015740,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016595,GO:0016597,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0034220,GO:0036094,GO:0042221,GO:0042493,GO:0042597,GO:0043167,GO:0043168,GO:0043177,GO:0044464,GO:0046942,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0070335,GO:0070778,GO:0071702,GO:0071705,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000001848 225.0
LYD3_k127_3019973_2 Las17-binding protein actin regulator - - - 0.000000000000000000000000000000000000000000000000005005 190.0
LYD3_k127_3019973_3 Permease MlaE K02066 - - 0.0000000000000000000000000000000001493 147.0
LYD3_k127_3019973_4 - - - - 0.000000000000000000002735 102.0
LYD3_k127_3019973_5 Outer membrane lipoprotein K06077 - - 0.00000000000000001273 83.0
LYD3_k127_3019973_6 Glycine zipper 2TM domain - - - 0.00000002552 64.0
LYD3_k127_30320_0 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 370.0
LYD3_k127_30320_1 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 366.0
LYD3_k127_3040978_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004253 570.0
LYD3_k127_3040978_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007617 273.0
LYD3_k127_3040978_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000003278 233.0
LYD3_k127_3040978_3 Preprotein translocase, YajC subunit K03210 - - 0.00000000000000000000000000000000001034 141.0
LYD3_k127_3058425_0 Cysteine-rich domain - - - 8.394e-277 859.0
LYD3_k127_3058425_1 Nitrate reductase gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009268 346.0
LYD3_k127_3058425_2 DsrC like protein K11179 - - 0.000000000000000000000000000000000000000000000000000000047 197.0
LYD3_k127_3058425_3 NADPH-dependent glutamate synthase beta - - - 0.0000000000000000000008595 108.0
LYD3_k127_3105872_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 545.0
LYD3_k127_3105872_1 MotA TolQ ExbB proton channel family K03561,K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006323 282.0
LYD3_k127_3105872_2 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000001514 159.0
LYD3_k127_3105872_3 Tol-Pal system-associated acyl-CoA thioesterase K07107 - - 0.0000000000000000000000000000000007627 136.0
LYD3_k127_3105872_4 Cell division and transport-associated protein TolA K03646 - - 0.0000000000000000000000000005963 124.0
LYD3_k127_3105872_5 - - - - 0.0000006516 62.0
LYD3_k127_312969_0 AFG1-like ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 428.0
LYD3_k127_312969_1 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009962 386.0
LYD3_k127_313292_0 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 492.0
LYD3_k127_313292_1 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 300.0
LYD3_k127_313292_2 ABC transporter substrate-binding protein K02035,K13889 - - 0.0000000000000000000000000000000000000000000229 164.0
LYD3_k127_3148823_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050896,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 404.0
LYD3_k127_3148823_1 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009476 273.0
LYD3_k127_3148823_2 Mj0042 family finger-like - - - 0.00000000000000000003749 104.0
LYD3_k127_3154471_0 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 463.0
LYD3_k127_3154471_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000004273 241.0
LYD3_k127_3154471_2 membrane - - - 0.000000000000000000000000000000000000000000000000000219 194.0
LYD3_k127_3154471_3 Bile acid sodium symporter K03453 - - 0.00000000000000004481 92.0
LYD3_k127_3154471_4 - - - - 0.00000000001793 67.0
LYD3_k127_3159794_0 hydrolase activity, acting on ester bonds - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 345.0
LYD3_k127_3159794_1 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009686 298.0
LYD3_k127_3159794_2 COG3245 Cytochrome c5 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000946 248.0
LYD3_k127_3159794_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000003646 139.0
LYD3_k127_3159794_4 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.00000006915 55.0
LYD3_k127_3160740_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000002138 186.0
LYD3_k127_31640_0 lactate racemase activity K22373 - 5.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 492.0
LYD3_k127_31640_1 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000000000000003885 216.0
LYD3_k127_31640_2 OsmC-like protein K07397 - - 0.000000000000000000000000000000000000000000001679 171.0
LYD3_k127_31640_3 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000002383 133.0
LYD3_k127_31640_4 Domain of unknown function (DUF4440) - - - 0.0000000000000000005146 86.0
LYD3_k127_31640_5 - - - - 0.000000000007168 70.0
LYD3_k127_3193009_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 4.632e-281 877.0
LYD3_k127_3193009_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000487 482.0
LYD3_k127_3193009_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009728 497.0
LYD3_k127_3193009_3 Cold-shock DNA-binding domain protein K03704 - - 0.000000000000000000000000000000005419 128.0
LYD3_k127_3193009_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000001307 123.0
LYD3_k127_3193009_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00007062 45.0
LYD3_k127_320279_0 Protein of unknown function (DUF3141) - - - 5e-324 1011.0
LYD3_k127_320279_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 533.0
LYD3_k127_320279_2 phosphate K00625 - 2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 502.0
LYD3_k127_320279_3 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 372.0
LYD3_k127_320279_4 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000006191 261.0
LYD3_k127_320279_5 Protein of unknown function (DUF3302) - - - 0.000000000000000000000000000000000002259 148.0
LYD3_k127_3214913_0 Bacterial extracellular solute-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 547.0
LYD3_k127_3214913_1 Aldo/keto reductase family K00064 - 1.1.1.122 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 352.0
LYD3_k127_3214913_2 metal-dependent hydrolase of the TIM-barrel fold K07046 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000948 325.0
LYD3_k127_3214913_3 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000003086 238.0
LYD3_k127_3214913_4 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.000000000000000000000000000000000007241 138.0
LYD3_k127_3214913_5 COG1175 ABC-type sugar transport systems permease components K02025 - - 0.000000003847 60.0
LYD3_k127_3221454_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 480.0
LYD3_k127_3221454_1 PFAM RIO-like kinase K07178 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000006884 216.0
LYD3_k127_3221454_2 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000001611 219.0
LYD3_k127_3221454_3 Von Willebrand factor type A K07114 - - 0.00000000000004175 73.0
LYD3_k127_3221454_4 Protein of unknown function (DUF2934) - - - 0.0006535 49.0
LYD3_k127_3225849_0 PrkA AAA domain K07180 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 463.0
LYD3_k127_3225849_1 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001621 264.0
LYD3_k127_325370_0 ABC transporter substrate-binding protein K02035,K13889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 448.0
LYD3_k127_325370_1 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000007391 250.0
LYD3_k127_325899_0 mitochondrial gene expression - - - 1.215e-245 794.0
LYD3_k127_325899_1 ATPase involved in DNA repair K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006317 433.0
LYD3_k127_3318252_0 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 404.0
LYD3_k127_3318252_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 377.0
LYD3_k127_3318252_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 366.0
LYD3_k127_3318252_3 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000000000000000000000007997 243.0
LYD3_k127_3318252_4 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000005268 210.0
LYD3_k127_3318252_5 FAD dependent oxidoreductase - - - 0.0000000002945 62.0
LYD3_k127_3339368_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 344.0
LYD3_k127_3339368_1 LUD domain K00782 - - 0.000000000000000003924 89.0
LYD3_k127_3347820_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.0 1513.0
LYD3_k127_3347820_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 7.754e-216 679.0
LYD3_k127_3347820_10 PAS domain - - - 0.000000000000000000000001666 108.0
LYD3_k127_3347820_11 PFAM zinc finger, DksA TraR C4-type - - - 0.00000000000000005435 86.0
LYD3_k127_3347820_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008092 445.0
LYD3_k127_3347820_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009391 401.0
LYD3_k127_3347820_4 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 368.0
LYD3_k127_3347820_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006269 320.0
LYD3_k127_3347820_6 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 299.0
LYD3_k127_3347820_7 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000006561 217.0
LYD3_k127_3347820_8 Serine aminopeptidase, S33 K06889 - - 0.000000000000000000000000000000000000000000000000000006914 199.0
LYD3_k127_3347820_9 Beta/gamma crystallins - - - 0.00000000000000000000000000000000000000000001407 177.0
LYD3_k127_3359136_0 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 380.0
LYD3_k127_3359136_1 dksA traR - - - 0.00000000000000000000000004588 117.0
LYD3_k127_3359136_2 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000001268 103.0
LYD3_k127_3359136_3 iron ion homeostasis - - - 0.0001101 52.0
LYD3_k127_3361256_0 C4-dicarboxylate ABC transporter K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 490.0
LYD3_k127_3361256_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006277 332.0
LYD3_k127_3361256_2 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 302.0
LYD3_k127_3361256_3 Tripartite ATP-independent periplasmic transporter, DctM component K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006812 272.0
LYD3_k127_3361256_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000001777 163.0
LYD3_k127_3362032_0 DNA topoisomerase III K03169 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 390.0
LYD3_k127_3362032_1 DNA recombination-mediator protein A K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 350.0
LYD3_k127_3362032_2 Lysin motif - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001686 269.0
LYD3_k127_3363407_0 Belongs to the mannose-6-phosphate isomerase type 2 family K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 499.0
LYD3_k127_3363407_1 lipocalin K03098 - - 0.0000000000000000000000000000000000000000000000000004306 191.0
LYD3_k127_3372777_0 MMPL family K07003 - - 1.317e-203 642.0
LYD3_k127_3372777_1 Quinohemoprotein amine dehydrogenase, alpha subunit domain II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 430.0
LYD3_k127_3372777_2 Photosynthesis system II assembly factor YCF48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003008 267.0
LYD3_k127_3372777_3 Tellurite resistance protein TerB - - - 0.000000000000000000000000006042 115.0
LYD3_k127_3379060_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 4.037e-217 687.0
LYD3_k127_3379060_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 481.0
LYD3_k127_3379060_2 Rod shape-determining protein MreB K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 406.0
LYD3_k127_3379060_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000002351 122.0
LYD3_k127_3381017_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07789 - - 0.0 1503.0
LYD3_k127_3381017_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009662 472.0
LYD3_k127_3381017_2 Protein of unknown function (DUF1615) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 411.0
LYD3_k127_3381017_3 Peroxiredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003105 264.0
LYD3_k127_3381017_4 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000003056 207.0
LYD3_k127_3381017_5 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788 - - 0.0000000000000000000000000000000000000000005236 159.0
LYD3_k127_3381017_6 YCII-related domain K09780 - - 0.0000000002147 66.0
LYD3_k127_3385413_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 2.734e-277 859.0
LYD3_k127_3385413_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 586.0
LYD3_k127_3385413_2 branched-chain amino acid K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 496.0
LYD3_k127_3385413_3 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 398.0
LYD3_k127_3385413_4 Two component regulator three Y domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 408.0
LYD3_k127_3385413_5 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000007681 185.0
LYD3_k127_3385413_6 MobA-Related Protein K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000002533 180.0
LYD3_k127_3388489_0 Major facilitator superfamily K07552,K18552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 336.0
LYD3_k127_3388489_1 EamA-like transporter family K15270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000904 255.0
LYD3_k127_3388489_2 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0000000000000000000000007301 104.0
LYD3_k127_3394660_0 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005167 606.0
LYD3_k127_3394660_1 Belongs to the binding-protein-dependent transport system permease family K11961 - - 0.00000000000000000000000000000000000000000000000000000245 193.0
LYD3_k127_3403686_0 Esterase PHB depolymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008418 492.0
LYD3_k127_3403686_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007716 412.0
LYD3_k127_3403686_2 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 374.0
LYD3_k127_3403686_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004042 294.0
LYD3_k127_3403686_4 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000005097 204.0
LYD3_k127_3403686_5 transcriptional regulators containing the CopG Arc MetJ DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000003873 193.0
LYD3_k127_3403686_6 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000008694 122.0
LYD3_k127_3403686_7 Uncharacterized conserved protein (DUF2249) - - - 0.000000000000000000008191 94.0
LYD3_k127_3407043_0 Ribonuclease E/G family K08301 - - 4.409e-228 725.0
LYD3_k127_3407043_1 Integral membrane protein TerC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004109 321.0
LYD3_k127_3407043_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000003121 224.0
LYD3_k127_3407043_3 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000002182 206.0
LYD3_k127_3407043_4 Bacterial protein of unknown function (DUF924) - - - 0.0000000000000000000000000000000000000000000000000000004739 198.0
LYD3_k127_3407043_5 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000003522 204.0
LYD3_k127_3407043_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000003015 176.0
LYD3_k127_3407043_7 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000000004604 149.0
LYD3_k127_3407700_0 PFAM pyruvate ferredoxin flavodoxin oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 469.0
LYD3_k127_3407700_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K18356 - 1.2.1.58 0.0000000000000000000000000000000000000000001005 162.0
LYD3_k127_3412398_0 glutamate synthase alpha subunit domain protein K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 5.888e-257 802.0
LYD3_k127_3414057_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006804 485.0
LYD3_k127_3414057_1 Protein of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000000007711 233.0
LYD3_k127_3414948_0 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 5.867e-253 795.0
LYD3_k127_3414948_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 508.0
LYD3_k127_3414948_10 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006494 254.0
LYD3_k127_3414948_11 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008533 253.0
LYD3_k127_3414948_12 HD domain K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000002592 226.0
LYD3_k127_3414948_13 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000001788 189.0
LYD3_k127_3414948_14 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000002089 192.0
LYD3_k127_3414948_15 Domain of unknown function (DUF4824) - - - 0.000000000000000000000000000000000001636 153.0
LYD3_k127_3414948_16 HicA toxin of bacterial toxin-antitoxin, - - - 0.0000000000000000000000000007314 127.0
LYD3_k127_3414948_17 - - - - 0.000000000000000003153 91.0
LYD3_k127_3414948_2 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 492.0
LYD3_k127_3414948_3 Dehydrogenase E1 component K00161,K21416 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 461.0
LYD3_k127_3414948_4 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 445.0
LYD3_k127_3414948_5 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007751 421.0
LYD3_k127_3414948_6 Predicted membrane protein (DUF2157) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 394.0
LYD3_k127_3414948_7 Pirin C-terminal cupin domain K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 398.0
LYD3_k127_3414948_8 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009745 383.0
LYD3_k127_3414948_9 Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity K01118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000148 270.0
LYD3_k127_3418020_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 8.39e-220 687.0
LYD3_k127_3418020_1 Belongs to the peptidase S1C family K04691,K04772 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 430.0
LYD3_k127_3418020_10 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.0000000000000000976 79.0
LYD3_k127_3418020_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007859 309.0
LYD3_k127_3418020_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 310.0
LYD3_k127_3418020_4 Nucleotide transport and metabolism Carbohydrate transport and metabolism General function prediction only K02503 - - 0.0000000000000000000000000000000000000000000000005909 177.0
LYD3_k127_3418020_5 Cytochrome C1 K00413 - - 0.000000000000000000000000000000000000000000000005194 176.0
LYD3_k127_3418020_6 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000000000000000000000003381 145.0
LYD3_k127_3418020_7 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000000002931 119.0
LYD3_k127_3418020_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000005854 107.0
LYD3_k127_3418020_9 - - - - 0.0000000000000000000008007 102.0
LYD3_k127_3418929_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 444.0
LYD3_k127_3418929_1 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006141 319.0
LYD3_k127_3418929_2 chorismate mutase K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.00000000000000000000000005773 107.0
LYD3_k127_3423423_0 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007939 372.0
LYD3_k127_3423423_1 inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 301.0
LYD3_k127_3423423_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003274 284.0
LYD3_k127_3423423_3 Glutathione S-transferase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000003179 236.0
LYD3_k127_3423423_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000008225 220.0
LYD3_k127_3423423_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.000000000003676 71.0
LYD3_k127_3433612_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 450.0
LYD3_k127_3433612_1 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 337.0
LYD3_k127_3433612_2 Thioesterase superfamily protein K10806 - - 0.000000000000000000000000000000000000000000000009304 177.0
LYD3_k127_3433612_3 OmpA family K03286 - - 0.00001482 58.0
LYD3_k127_3449372_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001733 243.0
LYD3_k127_3449372_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000009426 242.0
LYD3_k127_3449372_2 - - - - 0.000000000000000000000000000000000000000000001134 187.0
LYD3_k127_3449372_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000004169 60.0
LYD3_k127_3452822_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 3.158e-301 931.0
LYD3_k127_3452822_1 Sodium:sulfate symporter transmembrane region K11106,K14445 - - 2.704e-218 694.0
LYD3_k127_3452822_2 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 547.0
LYD3_k127_3452822_3 membrane K15977 - - 0.0000000000000000000000000000000000000000000000002766 180.0
LYD3_k127_3452822_4 Prokaryotic cytochrome b561 K12262 - - 0.000000000000000000000000000000000003093 146.0
LYD3_k127_3452822_5 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000547 128.0
LYD3_k127_3453656_0 Protein of unknown function (DUF3616) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001444 254.0
LYD3_k127_3453656_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000006784 86.0
LYD3_k127_3453656_2 Putative peptidoglycan binding domain - - - 0.0000000000000001502 85.0
LYD3_k127_3458718_0 GMC oxidoreductase - - - 6.835e-203 646.0
LYD3_k127_3458718_1 esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000003601 99.0
LYD3_k127_3458718_2 Twin-arginine translocation pathway signal protein - - - 0.0000000007552 59.0
LYD3_k127_3459877_0 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 394.0
LYD3_k127_3459877_1 Transcriptional regulatory protein, C terminal K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 310.0
LYD3_k127_3459877_2 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000006021 214.0
LYD3_k127_3459877_3 Iron-containing alcohol dehydrogenase - - - 0.00003934 46.0
LYD3_k127_3466336_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004409 442.0
LYD3_k127_3466336_1 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 300.0
LYD3_k127_3467203_0 PFAM Protein kinase K11912,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009209 514.0
LYD3_k127_3467203_1 Alpha-amylase domain K01187 - 3.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 495.0
LYD3_k127_3467203_2 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006857 313.0
LYD3_k127_3467203_3 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007636 290.0
LYD3_k127_3467203_4 PFAM Conserved TM helix repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003346 248.0
LYD3_k127_3467203_5 - - - - 0.00000000000000000000000000000000000007917 149.0
LYD3_k127_3467203_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000001137 145.0
LYD3_k127_3467203_7 Lysin motif - - - 0.000000000000000000000000000000004073 145.0
LYD3_k127_3467203_8 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.00000000000000000005235 92.0
LYD3_k127_3467294_0 alpha amylase catalytic K05343 - 3.2.1.1,5.4.99.16 5.176e-310 956.0
LYD3_k127_3467294_1 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 2.522e-296 922.0
LYD3_k127_3467294_2 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 469.0
LYD3_k127_3470281_0 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008293 479.0
LYD3_k127_3470281_1 Formyl transferase, C-terminal domain K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 366.0
LYD3_k127_3470281_2 protein homotetramerization - - - 0.0000000000000000000000006574 119.0
LYD3_k127_3470281_3 Glycosyltransferase like family 2 K10012 - 2.4.2.53 0.0000000000006524 72.0
LYD3_k127_3473646_0 glycolate oxidase subunit GlcD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 293.0
LYD3_k127_3473646_1 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000000000002548 205.0
LYD3_k127_3473646_2 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000003844 214.0
LYD3_k127_3473646_3 - - - - 0.00000000001174 71.0
LYD3_k127_3481577_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 482.0
LYD3_k127_3481577_1 Natural resistance-associated macrophage protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 358.0
LYD3_k127_3481577_2 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000000000000000000000000111 224.0
LYD3_k127_3482004_0 TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 514.0
LYD3_k127_3482004_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008741 293.0
LYD3_k127_3482004_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000003683 228.0
LYD3_k127_3482331_0 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007855 364.0
LYD3_k127_3482331_1 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000000001048 246.0
LYD3_k127_3482331_2 Glycosyl transferase, family 4 K13007 - - 0.000000000000000000000000000000000000000000000000000000000000009926 229.0
LYD3_k127_3482331_3 Gram-negative porin - - - 0.00000000000000000000000000000000000000000006617 176.0
LYD3_k127_3482331_4 CoA-binding domain - - - 0.0000000000000000000000000000000000003081 154.0
LYD3_k127_3487871_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 504.0
LYD3_k127_3487871_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 339.0
LYD3_k127_3487871_10 FR47-like protein - - - 0.0000000000000000000000000000002953 138.0
LYD3_k127_3487871_11 Transcriptional regulator - - - 0.000000000000000000000000000002069 128.0
LYD3_k127_3487871_2 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004622 319.0
LYD3_k127_3487871_3 fumarylacetoacetate hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000603 274.0
LYD3_k127_3487871_4 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000002919 249.0
LYD3_k127_3487871_5 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000003081 202.0
LYD3_k127_3487871_6 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000003911 169.0
LYD3_k127_3487871_7 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000001293 171.0
LYD3_k127_3487871_8 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000004901 170.0
LYD3_k127_3487871_9 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000002605 153.0
LYD3_k127_3489084_0 DNA polymerase III K02342 - 2.7.7.7 4.733e-229 730.0
LYD3_k127_3489084_1 Extracellular ligand-binding receptor K01999 - - 3.184e-195 617.0
LYD3_k127_3489084_2 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007759 464.0
LYD3_k127_3489084_3 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 377.0
LYD3_k127_3489084_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 353.0
LYD3_k127_3489084_5 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 312.0
LYD3_k127_3489084_6 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008956 241.0
LYD3_k127_3489084_7 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000001833 179.0
LYD3_k127_3514697_0 Tripartite tricarboxylate transporter TctA family K07793 - - 1.13e-217 689.0
LYD3_k127_3514697_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 572.0
LYD3_k127_3514697_2 enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002433 421.0
LYD3_k127_3514697_3 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006563 254.0
LYD3_k127_3514697_4 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000009166 179.0
LYD3_k127_3520663_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 441.0
LYD3_k127_3520663_1 LysM domain K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 420.0
LYD3_k127_3520663_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 302.0
LYD3_k127_3520663_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001773 263.0
LYD3_k127_3520663_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000006729 239.0
LYD3_k127_3520663_5 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000001361 167.0
LYD3_k127_3520663_6 Tetratricopeptide repeat - - - 0.000000000000000000000000000000004035 132.0
LYD3_k127_3520663_7 Belongs to the ompA family K03286 - - 0.000000000000000000000000006484 111.0
LYD3_k127_3520663_8 - - - - 0.0000000000000005178 87.0
LYD3_k127_3525395_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 492.0
LYD3_k127_3525395_1 2 iron, 2 sulfur cluster binding K00266,K00528,K02823 - 1.18.1.2,1.19.1.1,1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 466.0
LYD3_k127_3525395_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004461 416.0
LYD3_k127_3525395_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 309.0
LYD3_k127_3525395_4 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000009062 123.0
LYD3_k127_3543523_0 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 527.0
LYD3_k127_3543523_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000004791 224.0
LYD3_k127_3543523_2 BON domain - - - 0.000000000000001405 83.0
LYD3_k127_3544466_0 NADPH-dependent glutamate synthase beta - - - 6.43e-200 645.0
LYD3_k127_3544466_1 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 613.0
LYD3_k127_3544466_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K18356 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 539.0
LYD3_k127_3544466_3 2-oxoacid acceptor oxidoreductase, gamma subunit, pyruvate 2-ketoisovalerate K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000003734 257.0
LYD3_k127_3547_0 Predicted membrane protein (DUF2339) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 350.0
LYD3_k127_3547_1 Transporter, major facilitator family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 299.0
LYD3_k127_3555777_0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K02438 - 3.2.1.196 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 504.0
LYD3_k127_3555777_1 pyruvate phosphate dikinase K01006,K01007 - 2.7.9.1,2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 380.0
LYD3_k127_356564_0 Transcriptional regulator K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 459.0
LYD3_k127_356564_1 PFAM AMP-dependent synthetase and ligase K18661 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002443 269.0
LYD3_k127_356564_2 Aminoacyl-tRNA editing domain K19055 - - 0.00000000000000000000000000000000000000000000000000000000001897 211.0
LYD3_k127_356564_3 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000000000000000000000000005067 203.0
LYD3_k127_356564_4 Metallo-beta-lactamase superfamily - - - 0.0000000001218 66.0
LYD3_k127_3580584_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 486.0
LYD3_k127_3580584_1 Protein of unknown function (DUF3750) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001539 260.0
LYD3_k127_3580584_2 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00124,K18005 - 1.12.1.2 0.00000000263 64.0
LYD3_k127_3588949_0 Methylmalonyl-CoA mutase large subunit K01847 - 5.4.99.2 5.484e-293 906.0
LYD3_k127_3588949_1 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 563.0
LYD3_k127_3588949_2 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 410.0
LYD3_k127_3590271_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.494e-229 725.0
LYD3_k127_3590271_1 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 7.744e-217 680.0
LYD3_k127_3590271_10 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 348.0
LYD3_k127_3590271_11 Aldolase/RraA K02553,K10218 - 4.1.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 299.0
LYD3_k127_3590271_12 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 306.0
LYD3_k127_3590271_13 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003748 288.0
LYD3_k127_3590271_14 Dehydrogenase K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000524 284.0
LYD3_k127_3590271_15 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000002443 188.0
LYD3_k127_3590271_16 B12 binding domain K01849 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0036094,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564 5.4.99.2 0.00000000000000000000000000000000000000000000000003984 181.0
LYD3_k127_3590271_2 Metallopeptidase family M24 - - - 3.181e-208 654.0
LYD3_k127_3590271_3 PrpF protein K16514 - 5.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007316 452.0
LYD3_k127_3590271_4 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 408.0
LYD3_k127_3590271_5 Dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 410.0
LYD3_k127_3590271_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000758 404.0
LYD3_k127_3590271_7 GlcNAc-PI de-N-acetylase K16515 - 4.2.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 384.0
LYD3_k127_3590271_8 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 388.0
LYD3_k127_3590271_9 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 371.0
LYD3_k127_3590908_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 484.0
LYD3_k127_3590908_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000000001985 250.0
LYD3_k127_3590908_2 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000000000000000000000000000000000000002108 177.0
LYD3_k127_3590908_3 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000000000002156 111.0
LYD3_k127_3598581_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 587.0
LYD3_k127_3598581_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 484.0
LYD3_k127_3598581_2 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000006744 124.0
LYD3_k127_3598581_3 homoserine dehydrogenase - - - 0.000001464 51.0
LYD3_k127_3618567_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009666 541.0
LYD3_k127_3618567_1 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 482.0
LYD3_k127_3618567_10 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000003428 130.0
LYD3_k127_3618567_11 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000002578 123.0
LYD3_k127_3618567_12 MerR HTH family regulatory protein K18997 - - 0.00000000000000156 81.0
LYD3_k127_3618567_2 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 450.0
LYD3_k127_3618567_3 DnaJ C terminal domain K05516 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 342.0
LYD3_k127_3618567_4 peptidase S1 and S6, chymotrypsin Hap - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 338.0
LYD3_k127_3618567_5 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 306.0
LYD3_k127_3618567_6 Regulator K01420 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003024 270.0
LYD3_k127_3618567_7 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000007627 229.0
LYD3_k127_3618567_8 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000001387 172.0
LYD3_k127_3618567_9 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000002534 159.0
LYD3_k127_3618888_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 378.0
LYD3_k127_3618888_1 Cysteine-rich domain K18928 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 356.0
LYD3_k127_3618888_2 LUD domain K18929 - - 0.0000000000000000000000000000000000000000000000000000000002656 208.0
LYD3_k127_362458_0 Phospholipase, patatin family K07001 - - 4.791e-245 766.0
LYD3_k127_362458_1 RND efflux system, outer membrane lipoprotein, NodT - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 479.0
LYD3_k127_362458_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008496 451.0
LYD3_k127_362458_3 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 439.0
LYD3_k127_362458_4 Belongs to the heme-copper respiratory oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007996 254.0
LYD3_k127_362458_5 protein conserved in bacteria - - - 0.00009637 49.0
LYD3_k127_362458_6 LTXXQ motif family protein - - - 0.0004875 51.0
LYD3_k127_3628923_0 pfam abc K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 439.0
LYD3_k127_3628923_1 radical SAM K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 369.0
LYD3_k127_3628923_2 glycosyl transferase family 2 K20444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 337.0
LYD3_k127_3628923_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 299.0
LYD3_k127_3628923_4 ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000194 211.0
LYD3_k127_3628923_5 PFAM Acyltransferase - - - 0.000000000000000000000000000000000000000000000000003224 196.0
LYD3_k127_3628923_6 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000001229 193.0
LYD3_k127_3628923_7 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000004756 154.0
LYD3_k127_364463_0 methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 407.0
LYD3_k127_364463_1 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000000000000000000000000000000000000000004644 212.0
LYD3_k127_364463_2 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000001252 177.0
LYD3_k127_364463_3 Cytochrome c - - - 0.000000000000000000001903 99.0
LYD3_k127_364463_4 Magnesium transport protein CorA - - - 0.000000000000000000002805 94.0
LYD3_k127_3650677_0 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 464.0
LYD3_k127_3650677_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 385.0
LYD3_k127_3650677_2 Psort location CytoplasmicMembrane, score K02237 - - 0.0000000000000000000001271 104.0
LYD3_k127_3650677_3 PFAM major facilitator superfamily MFS_1 - - - 0.000001395 51.0
LYD3_k127_3673031_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.15e-208 659.0
LYD3_k127_3673031_1 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006244 485.0
LYD3_k127_3673031_2 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005983 333.0
LYD3_k127_3673031_3 synthase K16872 - 2.3.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000000598 254.0
LYD3_k127_3673031_4 Belongs to the P-Pant transferase superfamily K06133 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000003633 110.0
LYD3_k127_3677231_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009674 586.0
LYD3_k127_3677231_1 Belongs to the MEMO1 family K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 315.0
LYD3_k127_3677231_2 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.000000000000000000000000000000000000000000000000000000000000000000000000004287 256.0
LYD3_k127_3677231_3 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000003862 229.0
LYD3_k127_3677231_4 PFAM AMMECR1 domain protein - - - 0.0000000000000000000000000000000000000000000000000000356 197.0
LYD3_k127_3685232_0 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 366.0
LYD3_k127_3685232_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009263 367.0
LYD3_k127_3685232_2 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 353.0
LYD3_k127_3697381_0 L-carnitine dehydratase bile acid-inducible protein F K18289 - 2.8.3.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004263 571.0
LYD3_k127_3697381_1 N-methylhydantoinase B acetone carboxylase alpha subunit K01474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0017168,GO:0034641,GO:0043603,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0071704,GO:1901564 3.5.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 413.0
LYD3_k127_3697381_2 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003312 241.0
LYD3_k127_3697381_3 Hydantoin racemase K16841 - 5.1.99.3 0.0000000000000000000000000000000000000000003214 172.0
LYD3_k127_3697381_4 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000008503 172.0
LYD3_k127_3715803_0 ABC transporter transmembrane region K06147,K18893 - - 1.206e-272 847.0
LYD3_k127_3715803_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 3.02e-203 654.0
LYD3_k127_3715803_2 COG1960 Acyl-CoA dehydrogenases K00249 - 1.3.8.7 0.000000000000136 85.0
LYD3_k127_3740203_0 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06132 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0090483,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 533.0
LYD3_k127_3740203_1 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 430.0
LYD3_k127_3740203_2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 423.0
LYD3_k127_3740203_3 Protein of unknown function (DUF2950) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000943 371.0
LYD3_k127_3740203_4 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 324.0
LYD3_k127_3740203_5 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 324.0
LYD3_k127_3740203_6 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001198 269.0
LYD3_k127_3740203_7 - - - - 0.00000000000000000000000000000000000000000000000000000003531 214.0
LYD3_k127_3740203_8 YXWGXW repeat (2 copies) - - - 0.00000000000000000000000000000114 126.0
LYD3_k127_3740203_9 YMGG-like Gly-zipper - - - 0.00000000000000000001676 97.0
LYD3_k127_3744726_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.518e-202 636.0
LYD3_k127_3744726_1 topoisomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 422.0
LYD3_k127_3744726_2 - - - - 0.00009331 53.0
LYD3_k127_376108_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 516.0
LYD3_k127_376108_1 Binding-protein-dependent transport system inner membrane component K02054,K11071,K11075 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 357.0
LYD3_k127_3763944_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 8.464e-304 947.0
LYD3_k127_3763944_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 405.0
LYD3_k127_3763944_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008617 297.0
LYD3_k127_3766964_0 His Kinase A (phosphoacceptor) domain - - - 0.0 1042.0
LYD3_k127_3766964_1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 3.249e-225 705.0
LYD3_k127_3766964_2 Transcriptional regulator K07110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 520.0
LYD3_k127_3766964_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 458.0
LYD3_k127_3766964_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000003162 156.0
LYD3_k127_3766964_5 Transcriptional regulator - - - 0.00000000000000483 76.0
LYD3_k127_3766964_6 - - - - 0.00000000001338 68.0
LYD3_k127_3792445_0 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 442.0
LYD3_k127_3792445_1 Aminotransferase class IV K00824 - 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000553 356.0
LYD3_k127_3792445_2 UbiA prenyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 316.0
LYD3_k127_3792445_3 - - - - 0.000000000000000000000000000000000000000000000000006357 193.0
LYD3_k127_3792445_4 UbiA prenyltransferase family - - - 0.000000000000000000000000000001679 129.0
LYD3_k127_380345_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 436.0
LYD3_k127_380345_1 PFAM iron permease FTR1 K07243 - - 0.00000000000000000000000000000000000000000000000000000000000000002476 227.0
LYD3_k127_380345_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000001234 91.0
LYD3_k127_3814637_0 Sigma-54 interaction domain K07715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 580.0
LYD3_k127_3814637_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 379.0
LYD3_k127_3814637_2 Dihydrofolate reductase K00287 - 1.5.1.3 0.000000000000000000000000000000000000000001696 161.0
LYD3_k127_3843371_0 AMP-binding enzyme K00666,K20034 - 6.2.1.44 4.141e-292 904.0
LYD3_k127_3843371_1 Peptidase M1 membrane alanine aminopeptidase - - - 4.661e-287 912.0
LYD3_k127_3843371_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 522.0
LYD3_k127_3843371_3 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 453.0
LYD3_k127_3843371_4 Protein of unknown function (DUF1298) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003543 374.0
LYD3_k127_3843371_5 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 364.0
LYD3_k127_3843371_6 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000001545 181.0
LYD3_k127_386288_0 mandelate racemase muconate lactonizing K20023 - 4.2.1.156,4.2.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 507.0
LYD3_k127_386288_1 dehydratase K01685,K16846 - 4.2.1.7,4.4.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 300.0
LYD3_k127_3888508_0 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 436.0
LYD3_k127_3888508_1 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000001811 267.0
LYD3_k127_3888508_2 diguanylate cyclase - - - 0.0000000000000000006871 88.0
LYD3_k127_397583_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 473.0
LYD3_k127_397583_1 Predicted membrane protein (DUF2069) - - - 0.00000000000000000004251 95.0
LYD3_k127_397583_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000001519 71.0
LYD3_k127_401262_0 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 4.651e-240 756.0
LYD3_k127_4016656_0 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 455.0
LYD3_k127_4016656_1 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 331.0
LYD3_k127_4016656_2 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003587 324.0
LYD3_k127_4016771_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 1.611e-209 654.0
LYD3_k127_4016771_1 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 355.0
LYD3_k127_4016771_2 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008114 302.0
LYD3_k127_4016771_3 major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000003311 239.0
LYD3_k127_4020924_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 2.617e-278 867.0
LYD3_k127_4020924_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 331.0
LYD3_k127_4020924_2 aldo keto reductase - - - 0.000000000003312 67.0
LYD3_k127_4021026_0 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00122 - 1.17.1.9 1.828e-271 845.0
LYD3_k127_4021026_1 PFAM formyl transferase domain protein K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000262 261.0
LYD3_k127_4021026_2 formate dehydrogenase, alpha subunit K00123,K22015 - 1.17.1.9,1.17.99.7 0.000000000000000000000000004597 128.0
LYD3_k127_4021590_0 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 374.0
LYD3_k127_4021590_1 Vitamin k epoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 377.0
LYD3_k127_4021590_2 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001852 244.0
LYD3_k127_4021590_3 ferredoxin - - - 0.0000000000000000000000000000000000001047 142.0
LYD3_k127_4021590_4 Iron-sulfur cluster assembly protein - - - 0.000000000000000000000000000000001879 132.0
LYD3_k127_4021590_5 Flavin reductase like domain - - - 0.0007058 43.0
LYD3_k127_4022634_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 513.0
LYD3_k127_4022634_1 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 305.0
LYD3_k127_4022634_2 endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000001838 160.0
LYD3_k127_4031289_0 Cys/Met metabolism PLP-dependent enzyme K01739,K01740 - 2.5.1.48,2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 457.0
LYD3_k127_4031289_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000009739 254.0
LYD3_k127_4031289_2 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000000132 238.0
LYD3_k127_4031289_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000002336 185.0
LYD3_k127_4031391_0 Sulfate permease family - - - 0.0000000000000000000000000000000000000000000000000000000000001458 235.0
LYD3_k127_4031391_1 TIGRFAM type VI secretion system FHA domain protein K07169,K11913 - - 0.0000000000000000000000000000000000000000000000001446 181.0
LYD3_k127_4036333_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 2.235e-225 719.0
LYD3_k127_4036333_1 COG0464 ATPases of the AAA class - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 606.0
LYD3_k127_4036333_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K13890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 494.0
LYD3_k127_4036333_3 PFAM binding-protein-dependent transport systems inner membrane component K13891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 490.0
LYD3_k127_4036333_4 ABC-type dipeptide transport system, periplasmic K02035,K13889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 406.0
LYD3_k127_4036333_5 Peptidase family S58 K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002264 398.0
LYD3_k127_4036333_6 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily K06968 - 2.1.1.186 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 294.0
LYD3_k127_4036333_7 KR domain - - - 0.00005705 54.0
LYD3_k127_4037581_0 Molecular chaperone. Has ATPase activity K04079 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000981 387.0
LYD3_k127_4037581_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 342.0
LYD3_k127_4037581_2 NnrU protein - - - 0.0000000000000000000000000003886 125.0
LYD3_k127_4037581_3 Histone methylation protein DOT1 - - - 0.00000000007885 66.0
LYD3_k127_4053481_0 Inositol monophosphatase family K01092 - 3.1.3.25 0.0000000000000000000000000000000001274 143.0
LYD3_k127_4053481_1 Domain of unknown function (DUF4124) - - - 0.00000000000000000008318 94.0
LYD3_k127_4054328_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 3.169e-284 882.0
LYD3_k127_4054328_1 Hopanoid biosynthesis associated radical SAM protein HpnH - - - 6.025e-199 624.0
LYD3_k127_4054328_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 456.0
LYD3_k127_4054328_3 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 0.0000000000000000000000000000000000000000000000000004545 185.0
LYD3_k127_4054328_4 LTXXQ motif family protein - - - 0.0002146 48.0
LYD3_k127_4056232_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 3.222e-197 623.0
LYD3_k127_4056232_1 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 346.0
LYD3_k127_4056232_2 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 336.0
LYD3_k127_4056232_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000157 136.0
LYD3_k127_4056232_4 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 0.0000000000000000000000000000005313 122.0
LYD3_k127_4057606_0 Male sterility protein - - - 4.367e-283 884.0
LYD3_k127_4057606_1 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 436.0
LYD3_k127_4057606_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 297.0
LYD3_k127_4057606_3 Amino acid ABC transporter substrate-binding protein K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002397 274.0
LYD3_k127_4057606_4 PFAM acyl-coA-binding protein, ACBP - - - 0.00000000000000000000000019 108.0
LYD3_k127_4057606_5 PFAM poly granule associated family protein - - - 0.000000000000003707 88.0
LYD3_k127_4060320_0 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006108 492.0
LYD3_k127_4060320_1 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 488.0
LYD3_k127_4060320_2 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 454.0
LYD3_k127_4060320_3 PaaX family K02616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005261 281.0
LYD3_k127_4062345_0 PFAM binding-protein-dependent transport systems inner membrane component K13894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 539.0
LYD3_k127_4062345_1 PFAM binding-protein-dependent transport systems inner membrane component K13895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 467.0
LYD3_k127_4062345_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000003406 233.0
LYD3_k127_4062345_3 Belongs to the ABC transporter superfamily K02031,K02032,K13892 - - 0.00004314 50.0
LYD3_k127_4078981_0 Required for the activity of the bacterial periplasmic transport system of putrescine K02055,K11069,K11073 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005376 535.0
LYD3_k127_4078981_1 Binding-protein-dependent transport system inner membrane component K11070,K11074 - - 0.000000000000000000000004144 102.0
LYD3_k127_4078981_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000001778 104.0
LYD3_k127_4087591_0 Glycosyl transferase, family 2 K00721,K07011,K12990,K14597,K16555,K21349 - 2.4.1.268,2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 494.0
LYD3_k127_4087591_1 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 413.0
LYD3_k127_4087591_2 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000007296 181.0
LYD3_k127_4087591_3 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.0000000000000000000000000000000000000000000001597 171.0
LYD3_k127_4087591_5 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.00000000000000000000002042 104.0
LYD3_k127_4087591_6 phosphocarrier HPr protein K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0007844 42.0
LYD3_k127_4092956_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 501.0
LYD3_k127_4092956_1 cytochrome c-type protein K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001478 267.0
LYD3_k127_4092956_2 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol - - - 0.0000000000000000000000000000000000000000006357 164.0
LYD3_k127_4092956_3 PFAM cytochrome c class I K08738 - - 0.000000000000000000000001496 113.0
LYD3_k127_4092956_4 cytochrome c5 - - - 0.000000000000000000000003274 105.0
LYD3_k127_4092956_5 Pfam cytochrome c K08738 - - 0.000000000000000000001732 97.0
LYD3_k127_4092956_6 cytochrome K08738 - - 0.00000009978 63.0
LYD3_k127_4094539_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 4.755e-223 699.0
LYD3_k127_4094539_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000002186 233.0
LYD3_k127_4102767_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 2.348e-257 808.0
LYD3_k127_4104653_0 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007941 372.0
LYD3_k127_4104653_1 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007357 246.0
LYD3_k127_4106256_0 Belongs to the enoyl-CoA hydratase isomerase family K19640 - - 3.209e-209 679.0
LYD3_k127_4106256_1 hydrogenase expression formation protein HypE K04655 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005411 483.0
LYD3_k127_4106256_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000913 418.0
LYD3_k127_4106256_3 ThiS family K03154 - - 0.00000000000000003644 83.0
LYD3_k127_4106256_4 PFAM cytochrome c, class I K08738 - - 0.00000000000003338 76.0
LYD3_k127_4106256_5 PFAM cytochrome c, class I K08738 - - 0.0000000000003409 76.0
LYD3_k127_4110468_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006055 572.0
LYD3_k127_4110468_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007483 511.0
LYD3_k127_4110468_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 354.0
LYD3_k127_4110468_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 323.0
LYD3_k127_4110468_4 COG3170 Tfp pilus assembly protein FimV K08086 - - 0.0000000000000000000000000000001949 128.0
LYD3_k127_4115215_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 477.0
LYD3_k127_4115215_1 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000005715 235.0
LYD3_k127_4115215_2 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000000000000000000000000000000000000000000000000000001151 238.0
LYD3_k127_4115215_3 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000001644 167.0
LYD3_k127_4115215_4 Domain of unknown function (DUF4397) - - - 0.0000000000000000000000001287 123.0
LYD3_k127_4115215_5 Ankyrin repeats (many copies) K10380,K15503 GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006887,GO:0006888,GO:0006996,GO:0007010,GO:0007163,GO:0007275,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0010638,GO:0012505,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019438,GO:0019899,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0032502,GO:0032589,GO:0032940,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0034101,GO:0034613,GO:0034641,GO:0035088,GO:0035090,GO:0042383,GO:0042592,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044237,GO:0044249,GO:0044271,GO:0044304,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0060090,GO:0061245,GO:0061515,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1990778 - 0.0002163 53.0
LYD3_k127_4118477_0 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0 1018.0
LYD3_k127_4118477_1 Cytochrome bd-type quinol oxidase, subunit 1 K00425 - 1.10.3.14 2.87e-239 749.0
LYD3_k127_4118477_2 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 9.374e-206 655.0
LYD3_k127_4118477_3 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 478.0
LYD3_k127_4118477_4 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000007757 194.0
LYD3_k127_4118477_5 N-terminal half of MaoC dehydratase - - - 0.00000000000000000000000000001365 120.0
LYD3_k127_412006_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001057 262.0
LYD3_k127_412006_1 Ribonuclease E/G family K08301 - - 0.000000000000000000000000000000000000000000000000000000000002103 210.0
LYD3_k127_412006_2 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.00000000000000000000000000000000000000000000000000000000008811 213.0
LYD3_k127_412006_3 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000000000000008626 197.0
LYD3_k127_412006_4 Esterase PHB depolymerase K05973 - 3.1.1.75 0.00000000000000000000000000000000000000000000008214 182.0
LYD3_k127_412006_5 Secreted repeat of unknown function - - - 0.0000000000000000000000000000000000000000000007799 171.0
LYD3_k127_412006_6 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000005964 163.0
LYD3_k127_412006_7 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000002094 153.0
LYD3_k127_412006_8 Ribonuclease E/G family K08301 - - 0.00000004781 54.0
LYD3_k127_4122805_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K16871 - 2.6.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008149 599.0
LYD3_k127_4122805_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003378 441.0
LYD3_k127_4122805_2 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006067 286.0
LYD3_k127_4122805_3 PFAM extracellular solute-binding protein family 1 K02055 - - 0.0000000000000003216 85.0
LYD3_k127_4130692_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 574.0
LYD3_k127_4130692_1 NUDIX domain K08310 - 3.6.1.67 0.00000000000000000000000000000000000000000000000000000004871 200.0
LYD3_k127_4132380_0 Acetyltransferase (GNAT) domain K02348 - - 0.0000000000000000000000000000000000000000362 160.0
LYD3_k127_4132380_1 EVE domain - - - 0.000000000000000000000000000000000001526 143.0
LYD3_k127_4132380_2 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000001636 121.0
LYD3_k127_4132380_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000004985 94.0
LYD3_k127_4144907_0 RmlD substrate binding domain K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 540.0
LYD3_k127_4144907_1 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003672 522.0
LYD3_k127_4144907_10 - - - - 0.00000000000000000000000000000000003898 140.0
LYD3_k127_4144907_11 Putative DNA-binding domain - - - 0.00000000000000000000000000000000006257 144.0
LYD3_k127_4144907_12 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000000000000000000000004829 128.0
LYD3_k127_4144907_13 TIGRFAM phasin family protein - - - 0.000000000000000000000003917 111.0
LYD3_k127_4144907_14 Predicted integral membrane protein (DUF2282) - - - 0.0000000000000000002721 91.0
LYD3_k127_4144907_15 Putative zinc-finger - - - 0.0000000393 58.0
LYD3_k127_4144907_16 Predicted methyltransferase regulatory domain - - - 0.00003463 54.0
LYD3_k127_4144907_2 Acyl-CoA dehydrogenase, middle domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 419.0
LYD3_k127_4144907_3 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 404.0
LYD3_k127_4144907_4 Belongs to the UPF0276 family K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 346.0
LYD3_k127_4144907_5 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003194 277.0
LYD3_k127_4144907_6 2-phosphosulfolactate phosphatase activity K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.000000000000000000000000000000000000000000000000000000000000000000000001568 254.0
LYD3_k127_4144907_7 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000000001609 220.0
LYD3_k127_4144907_8 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000000000000000000002929 188.0
LYD3_k127_4144907_9 Predicted methyltransferase regulatory domain - - - 0.00000000000000000000000000000000000000000005643 163.0
LYD3_k127_4145097_0 Type IV pilus biogenesis protein K02454 - - 1.115e-221 702.0
LYD3_k127_4145097_1 RecA-superfamily ATPases implicated in signal transduction K08482 - - 2.218e-197 627.0
LYD3_k127_4145097_2 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005813 581.0
LYD3_k127_4145097_3 two-component system sensor protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 443.0
LYD3_k127_4145097_4 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 317.0
LYD3_k127_4145097_5 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000006068 230.0
LYD3_k127_4145097_6 - - - - 0.0000000000000000000000000000004274 123.0
LYD3_k127_4145097_7 transposase IS116 IS110 IS902 family K07486 - - 0.0000000000000000301 87.0
LYD3_k127_4145097_8 Dienelactone hydrolase - - - 0.000000000002076 81.0
LYD3_k127_4145097_9 Subtilase family - - - 0.000000000304 74.0
LYD3_k127_4148482_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 593.0
LYD3_k127_4148482_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005045 376.0
LYD3_k127_4148482_2 regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001704 274.0
LYD3_k127_4150983_0 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 458.0
LYD3_k127_4150983_1 Carboxylesterase K06999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008457 261.0
LYD3_k127_4150983_2 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.0000000000000000000000000000001503 126.0
LYD3_k127_4154564_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 582.0
LYD3_k127_4154564_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 0.00000000000000000000000000000000000000000000000000001252 192.0
LYD3_k127_4158564_0 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 448.0
LYD3_k127_4158564_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008585 406.0
LYD3_k127_4158564_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 310.0
LYD3_k127_4158564_3 Ketosteroid K06893 - - 0.00000000000000000000000000000000000000000000000002485 184.0
LYD3_k127_4158564_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000000000000009436 178.0
LYD3_k127_4160573_0 mandelate racemase muconate lactonizing K01706 - 4.2.1.40 1.981e-201 634.0
LYD3_k127_4160573_1 PFAM Short-chain dehydrogenase reductase SDR K18335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006032 323.0
LYD3_k127_4160573_2 Regulatory protein GntR HTH - - - 0.0000000000000000000000000000000000000000000000000006589 190.0
LYD3_k127_4160573_3 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.000000004619 57.0
LYD3_k127_4165542_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 567.0
LYD3_k127_4175927_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1686.0
LYD3_k127_4175927_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 295.0
LYD3_k127_4175927_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001351 242.0
LYD3_k127_4188415_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001299 270.0
LYD3_k127_4188415_1 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000004207 187.0
LYD3_k127_4188415_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000005809 152.0
LYD3_k127_4188415_3 cell division protein - - - 0.000000000000000000000001929 113.0
LYD3_k127_4189266_0 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001085 263.0
LYD3_k127_4189266_1 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000008097 238.0
LYD3_k127_4189266_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000001678 145.0
LYD3_k127_4189266_3 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000001502 102.0
LYD3_k127_4189266_4 PFAM thioesterase superfamily K18700 - 3.1.2.29 0.0000000000000004317 79.0
LYD3_k127_419289_0 AMP-dependent synthetase - - - 1.297e-242 764.0
LYD3_k127_419289_1 Hemolysin III K11068 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001615 252.0
LYD3_k127_4196523_0 DNA recombination protein RmuC K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 458.0
LYD3_k127_4196523_1 GTP-binding protein K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 315.0
LYD3_k127_4196523_2 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002768 269.0
LYD3_k127_4196523_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000369 239.0
LYD3_k127_4200254_0 Sulfatase K01130 - 3.1.6.1 2.485e-321 986.0
LYD3_k127_4200254_1 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 443.0
LYD3_k127_4200254_2 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001115 292.0
LYD3_k127_4200254_3 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00058,K12972 - 1.1.1.399,1.1.1.79,1.1.1.81,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000001878 243.0
LYD3_k127_4200254_4 ABC-2 type transporter K09694 - - 0.00000000000000000000000000003661 120.0
LYD3_k127_4200842_0 Nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 538.0
LYD3_k127_4200842_1 Nitrate reductase K00374 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003882 299.0
LYD3_k127_4200842_2 peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000003191 234.0
LYD3_k127_4200842_3 Nitrate reductase delta subunit K00373 - - 0.000000000000000000000000000000000000000000000008093 191.0
LYD3_k127_4200842_4 Uncharacterized conserved protein (DUF2249) - - - 0.000000000000000337 83.0
LYD3_k127_4203832_0 PFAM carboxyl transferase - - - 0.0000000000000000000000000000000000000000000000000000001173 196.0
LYD3_k127_4203832_1 PFAM Na transporting methylmalonyl-CoA oxaloacetate decarboxylase beta subunit K01572 - 4.1.1.3 0.000000000000000000000000000000000000000000000004079 174.0
LYD3_k127_4203832_2 sodium ion export across plasma membrane K01573 GO:0003674,GO:0003824,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008948,GO:0015672,GO:0016829,GO:0016830,GO:0016831,GO:0030001,GO:0051179,GO:0051234 4.1.1.3 0.00000000000000000000000000001045 123.0
LYD3_k127_4203832_3 CoA carboxylase activity K01965 - 6.4.1.3 0.00000000000000000000000000004715 127.0
LYD3_k127_4203977_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.129e-287 894.0
LYD3_k127_4203977_1 Sugar (and other) transporter - - - 4.218e-262 812.0
LYD3_k127_4203977_10 protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 347.0
LYD3_k127_4203977_11 Short-chain dehydrogenase reductase (SDR) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 307.0
LYD3_k127_4203977_12 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006335 296.0
LYD3_k127_4203977_13 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004551 264.0
LYD3_k127_4203977_14 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000001394 239.0
LYD3_k127_4203977_15 Sulfate permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002404 262.0
LYD3_k127_4203977_16 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000000002256 190.0
LYD3_k127_4203977_17 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000004791 175.0
LYD3_k127_4203977_18 - - - - 0.00000005624 61.0
LYD3_k127_4203977_19 Poly(R)-hydroxyalkanoic acid synthase subunit - - - 0.00001074 57.0
LYD3_k127_4203977_2 PFAM Xylose isomerase domain protein TIM barrel K00457 - 1.13.11.27 4.704e-252 802.0
LYD3_k127_4203977_3 PFAM AMP-dependent synthetase and ligase K00666 - - 1.419e-196 626.0
LYD3_k127_4203977_4 histidine ammonia-lyase K01745 GO:0003674,GO:0003824,GO:0004397,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016840,GO:0016841,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 619.0
LYD3_k127_4203977_5 3-carboxy-cis,cis-muconate cycloisomerase K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001546 473.0
LYD3_k127_4203977_6 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 454.0
LYD3_k127_4203977_7 TIGRFAM poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit K03821 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 437.0
LYD3_k127_4203977_8 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000435 417.0
LYD3_k127_4203977_9 protocatechuate 3,4-dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 407.0
LYD3_k127_4205056_0 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000004341 137.0
LYD3_k127_4229989_0 - - - - 0.0000000000000000000000000009488 129.0
LYD3_k127_4229989_1 Domain of unknown function (DUF3400) - - - 0.0000000000004449 68.0
LYD3_k127_4231179_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 5.447e-211 668.0
LYD3_k127_4231179_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000495 468.0
LYD3_k127_4231179_2 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 309.0
LYD3_k127_4231880_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 5.154e-293 909.0
LYD3_k127_4234447_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.0 1060.0
LYD3_k127_4234447_1 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 401.0
LYD3_k127_4234447_2 Thiamine pyrophosphate enzyme, central domain K04103 - 4.1.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 391.0
LYD3_k127_4234447_3 - - - - 0.000000000000000000000000000000000000000000000000000001091 196.0
LYD3_k127_4234447_4 Uncharacterized conserved protein (DUF2249) - - - 0.000000000000000000000000000002958 122.0
LYD3_k127_4234447_5 - - - - 0.00000000000000000006936 102.0
LYD3_k127_4234447_6 - - - - 0.00000000000004013 82.0
LYD3_k127_4243537_0 PFAM Uncharacterised protein family UPF0027 K14415 - 6.5.1.3 6.244e-224 702.0
LYD3_k127_4243537_1 Aminotransferase K09758 - 4.1.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 540.0
LYD3_k127_4243537_2 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 414.0
LYD3_k127_4243537_3 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007134 333.0
LYD3_k127_4243537_4 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007719 254.0
LYD3_k127_4243537_5 PFAM cytochrome c, class I K08738 - - 0.0000000000000001258 84.0
LYD3_k127_4243537_6 Belongs to the peptidase S16 family - - - 0.00002182 49.0
LYD3_k127_4255932_0 Lactonase, 7-bladed beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 371.0
LYD3_k127_4255932_1 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000001679 198.0
LYD3_k127_4255932_2 TonB-dependent receptor K02014 - - 0.000000000000000000000000001218 122.0
LYD3_k127_4255932_3 TonB dependent receptor - - - 0.0000000001076 70.0
LYD3_k127_4255932_4 TonB dependent receptor - - - 0.0001924 49.0
LYD3_k127_4274604_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 4.514e-206 652.0
LYD3_k127_4274604_1 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 0.000000000000000000000000000000000000001664 148.0
LYD3_k127_4274604_2 Bacterial PH domain - - - 0.000000000000000000000000004458 113.0
LYD3_k127_4298919_0 Amidohydrolase family K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 482.0
LYD3_k127_4298919_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 320.0
LYD3_k127_4298919_2 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 313.0
LYD3_k127_4298919_3 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 304.0
LYD3_k127_430111_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.0 1012.0
LYD3_k127_430111_1 Belongs to the HypD family K04654 - - 2.017e-202 636.0
LYD3_k127_430111_2 Hydrogenase K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008571 409.0
LYD3_k127_430111_3 HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.00000000000000000000000000000000000000000000000000000000000000000451 236.0
LYD3_k127_430111_4 Ni,Fe-hydrogenase I large subunit - - - 0.000000000000000000000000000000000000000000000000000000005175 218.0
LYD3_k127_430111_5 hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000001094 173.0
LYD3_k127_430111_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000000000000000009637 130.0
LYD3_k127_430111_7 [NiFe]-hydrogenase assembly, chaperone, HybE - - - 0.0000000000000000000000002267 115.0
LYD3_k127_430111_8 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.00000000000000000000002872 109.0
LYD3_k127_430111_9 Rubredoxin - - - 0.0000000000000000000004026 109.0
LYD3_k127_4302282_0 SpoVR family K06415 - - 1.405e-225 708.0
LYD3_k127_4302282_1 PFAM Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001862 292.0
LYD3_k127_4302282_2 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002221 246.0
LYD3_k127_4302282_3 Universal stress protein family - - - 0.00000000000000000000000000000000003142 139.0
LYD3_k127_4317562_0 Putative modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 565.0
LYD3_k127_4317562_1 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 282.0
LYD3_k127_4317562_2 Belongs to the UPF0307 family K09889 - - 0.0000000000000000000000000000000002037 138.0
LYD3_k127_4317562_3 - - - - 0.000000000000002095 90.0
LYD3_k127_4317562_4 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000007971 50.0
LYD3_k127_4340924_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 9.61e-230 718.0
LYD3_k127_4340924_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002757 289.0
LYD3_k127_4340924_2 AFG1-like ATPase K06916 - - 0.000000000000007162 78.0
LYD3_k127_4355732_0 Radical SAM superfamily K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 530.0
LYD3_k127_4355732_1 Quinohemoprotein amine dehydrogenase, gamma subunit - - - 0.0002933 53.0
LYD3_k127_4373760_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 481.0
LYD3_k127_4373760_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 313.0
LYD3_k127_4373760_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002796 284.0
LYD3_k127_4373760_3 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000119 255.0
LYD3_k127_4373760_4 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000000000002752 236.0
LYD3_k127_4373760_5 SmpA / OmlA family K06186 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0030674,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042221,GO:0042802,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045203,GO:0045229,GO:0046677,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0060090,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.000000000000000000000002396 109.0
LYD3_k127_4386079_0 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 4.716e-226 707.0
LYD3_k127_4386079_1 Tripartite ATP-independent periplasmic transporter, DctM component K21393 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000604 602.0
LYD3_k127_4386079_10 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 356.0
LYD3_k127_4386079_11 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 357.0
LYD3_k127_4386079_12 amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 311.0
LYD3_k127_4386079_13 Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3- dehydroshikimate K03785 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 291.0
LYD3_k127_4386079_14 Tripartite ATP-independent periplasmic transporters, DctQ component K11689,K21394 - - 0.00000000000000000000000000000000000000000000000000000000002902 212.0
LYD3_k127_4386079_15 Oxidoreductase family, NAD-binding Rossmann fold K19181 - 1.1.1.292 0.0000000000000000000004522 98.0
LYD3_k127_4386079_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 480.0
LYD3_k127_4386079_3 PFAM oxidoreductase domain protein K19181 - 1.1.1.292 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 462.0
LYD3_k127_4386079_4 Shikimate dehydrogenase substrate binding domain protein K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009417 419.0
LYD3_k127_4386079_5 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007215 416.0
LYD3_k127_4386079_6 TIGRFAM TRAP dicarboxylate transporter, DctP subunit K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006822 400.0
LYD3_k127_4386079_7 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 407.0
LYD3_k127_4386079_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 388.0
LYD3_k127_4386079_9 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007404 372.0
LYD3_k127_4398273_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 401.0
LYD3_k127_4398273_1 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 366.0
LYD3_k127_4398273_2 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.000000000000000000000000000000000000000000000000000000000000000000004215 256.0
LYD3_k127_4398273_3 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000002947 224.0
LYD3_k127_4398780_0 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 4.772e-250 794.0
LYD3_k127_4398780_1 Belongs to the thiolase family K00626 - 2.3.1.9 2.043e-218 683.0
LYD3_k127_4398780_2 AcyL-CoA dehydrogenase K06445 - - 0.00000000000000000000000000000000000000000000000000000000000198 215.0
LYD3_k127_4398780_3 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000003071 157.0
LYD3_k127_4403568_0 RmlD substrate binding domain K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 421.0
LYD3_k127_4403568_1 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 422.0
LYD3_k127_4403568_2 type I secretion outer membrane protein, TolC K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005872 357.0
LYD3_k127_4403568_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 317.0
LYD3_k127_4403568_4 lipopolysaccharide heptosyltransferase I K02841 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001546 271.0
LYD3_k127_4403568_5 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000051 180.0
LYD3_k127_4403568_6 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000307 45.0
LYD3_k127_4414101_0 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009402 297.0
LYD3_k127_4414101_1 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.00000000000000000000000000000000000000000000000000002693 191.0
LYD3_k127_4414101_2 O-methyltransferase activity - - - 0.0000001694 56.0
LYD3_k127_4421687_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 2.377e-298 941.0
LYD3_k127_4421687_1 Uncharacterised MFS-type transporter YbfB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002974 392.0
LYD3_k127_4421687_2 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000001447 269.0
LYD3_k127_4421687_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000002315 216.0
LYD3_k127_4421687_4 PFAM 2Fe-2S -binding - - - 0.0000000000000000000000000000000000000000000000000000000002544 208.0
LYD3_k127_4421687_5 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000000008703 150.0
LYD3_k127_4425670_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1083.0
LYD3_k127_4425670_1 Ion channel K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 373.0
LYD3_k127_4425670_2 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008333 309.0
LYD3_k127_4425670_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 291.0
LYD3_k127_4425670_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004346 269.0
LYD3_k127_4425670_5 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000006971 230.0
LYD3_k127_4425670_6 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000001629 119.0
LYD3_k127_4425670_7 Tripartite tricarboxylate transporter family receptor - - - 0.000000000008742 67.0
LYD3_k127_4445232_0 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 3.062e-205 646.0
LYD3_k127_4445232_1 Uncharacterised protein family (UPF0227) K07000 - - 0.000000000000000000000000000000000000000000004906 171.0
LYD3_k127_4445232_2 O-linked N-acetylglucosamine transferase SPINDLY family - - - 0.00000000000131 71.0
LYD3_k127_4456959_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K01414 - 3.4.24.70 1.351e-235 748.0
LYD3_k127_4456959_1 Organic solvent tolerance protein K04744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 597.0
LYD3_k127_4456959_2 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000803 467.0
LYD3_k127_4456959_3 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 432.0
LYD3_k127_4456959_4 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000006704 269.0
LYD3_k127_4456959_5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K01337 - 3.4.21.50 0.000000000000000000000007071 112.0
LYD3_k127_4465249_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006488 310.0
LYD3_k127_4465249_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000008102 216.0
LYD3_k127_4465249_2 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030001,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0051179,GO:0051234,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000001004 214.0
LYD3_k127_4484359_0 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000003782 214.0
LYD3_k127_4484359_1 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000000009611 186.0
LYD3_k127_4484359_2 COGs COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K04108 - 1.3.7.9 0.00000000000000000000000000000000000000000000342 172.0
LYD3_k127_4484359_3 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000000000000004221 147.0
LYD3_k127_4484359_4 Protein conserved in bacteria - - - 0.00000000000000000000000000000000004432 148.0
LYD3_k127_448929_0 Bifunctional enoyl-CoA hydratase phosphate acetyltransferase K00625,K00634 - 2.3.1.19,2.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004767 523.0
LYD3_k127_448929_1 Psort location Cytoplasmic, score 7.50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 518.0
LYD3_k127_448929_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000001467 176.0
LYD3_k127_448929_3 C-terminal domain of alpha-glycerophosphate oxidase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000004432 162.0
LYD3_k127_4505658_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 9.45e-273 849.0
LYD3_k127_4505658_1 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.0000000000000000000000000000000000000000000000000000000000000001718 222.0
LYD3_k127_4505658_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000625 63.0
LYD3_k127_4525897_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 351.0
LYD3_k127_4525897_1 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001958 282.0
LYD3_k127_4525897_2 alcohol dehydrogenase K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001062 267.0
LYD3_k127_4525897_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000002647 212.0
LYD3_k127_4547341_0 glutaminyl-tRNA K01886 - 6.1.1.18 1.56e-267 837.0
LYD3_k127_4547341_1 Exonuclease VII, large subunit K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 409.0
LYD3_k127_4547341_2 PFAM Glycosyl transferase family 2 K10012,K20534 - 2.4.2.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 398.0
LYD3_k127_4547341_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 404.0
LYD3_k127_4547341_4 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006081 389.0
LYD3_k127_4547341_5 Belongs to the GST superfamily K11209 - - 0.000000000000000000000000000008576 126.0
LYD3_k127_4547341_6 SWI complex, BAF60b domains - - - 0.000000000000001708 76.0
LYD3_k127_4547341_7 Belongs to the GST superfamily K11209 - - 0.0000003182 60.0
LYD3_k127_4563154_0 Histidine kinase-like ATPases - - - 1.961e-260 850.0
LYD3_k127_4563154_1 peptidase M20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069 620.0
LYD3_k127_4563154_2 Binding-protein-dependent transport system inner membrane component K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 451.0
LYD3_k127_4563154_3 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007623 439.0
LYD3_k127_4563154_4 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 339.0
LYD3_k127_4563154_5 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000000000000000000009543 205.0
LYD3_k127_4563154_6 PFAM extracellular solute-binding protein family 1 K02055 - - 0.00000000000000000000000000000000000000000000000004665 180.0
LYD3_k127_4563154_7 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000001561 164.0
LYD3_k127_4563154_8 PFAM response regulator receiver K11443 - - 0.00000000000000000000000000000000003603 141.0
LYD3_k127_4563154_9 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000004369 81.0
LYD3_k127_456478_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482 398.0
LYD3_k127_456478_1 KR domain K21883 - 1.1.1.401 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007201 332.0
LYD3_k127_456478_2 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 295.0
LYD3_k127_456478_3 carbonate dehydratase activity K01674 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000007472 259.0
LYD3_k127_456478_4 - - - - 0.000000000000000000000000000000000000000002592 162.0
LYD3_k127_456478_5 COG4584 Transposase and inactivated derivatives - - - 0.000000000009346 68.0
LYD3_k127_4573466_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 480.0
LYD3_k127_4573466_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 458.0
LYD3_k127_4604182_0 Phosphoenolpyruvate phosphomutase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 355.0
LYD3_k127_4604182_1 transcriptional Regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000001596 221.0
LYD3_k127_4604182_2 DNA repair photolyase - - - 0.00000000000000000000000000000000000000000000000000000005812 200.0
LYD3_k127_4604182_3 Galactose oxidase, central domain - - - 0.0000000000000000000000000000002072 136.0
LYD3_k127_4604182_4 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000001262 116.0
LYD3_k127_4604182_5 Cytochrome c mono- and diheme variants - - - 0.000000001435 59.0
LYD3_k127_4605503_0 Protein of unknown function, DUF255 - - - 2.252e-220 700.0
LYD3_k127_4605503_1 Cytochrome c K08738 - - 0.0000000000000000000000000138 122.0
LYD3_k127_461842_0 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000006797 246.0
LYD3_k127_461842_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.000000000000000000000000000000000000000000000000000000000001275 212.0
LYD3_k127_461842_2 CRS1_YhbY K07574 - - 0.00000000000000000000000000009539 119.0
LYD3_k127_4651473_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 463.0
LYD3_k127_4651473_1 DNA polymerase III (Delta subunit) K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002713 286.0
LYD3_k127_4651473_2 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000000000000000000000009965 140.0
LYD3_k127_4670460_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1167.0
LYD3_k127_4670460_1 Glycosyl transferase family 41 - - - 1.014e-224 719.0
LYD3_k127_4670460_2 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002108 514.0
LYD3_k127_4670460_3 Aldolase/RraA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000408 281.0
LYD3_k127_4670460_4 SMART protein phosphatase 2C domain protein - - - 0.00000000000000000000000000000000000001347 149.0
LYD3_k127_4670460_5 COG0457 FOG TPR repeat - - - 0.0000000000000000000006194 97.0
LYD3_k127_4670460_6 PFAM Pyruvate carboxyltransferase K01640 - 4.1.3.4 0.000000000002002 70.0
LYD3_k127_4682264_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 1.348e-266 832.0
LYD3_k127_4682264_1 AMP-binding enzyme C-terminal domain K00666 - - 1.204e-263 823.0
LYD3_k127_4682264_2 tRNA synthetases class I (C) catalytic domain K01883 - 6.1.1.16 4.378e-202 638.0
LYD3_k127_4682264_3 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008807 469.0
LYD3_k127_4682264_4 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 308.0
LYD3_k127_4682264_5 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000009811 245.0
LYD3_k127_4682264_6 Protein of unknown function, DUF485 - - - 0.00000000000000000000000000000000000000004047 156.0
LYD3_k127_4682264_7 Glycosyltransferase, group 2 family protein - - - 0.000000000000000000000000000000000153 145.0
LYD3_k127_4688880_0 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006414 467.0
LYD3_k127_4688880_1 - K07112 - - 0.00000000000000000000000000000000000000000000001999 177.0
LYD3_k127_4688880_2 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K00406,K01011,K07112 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000604 163.0
LYD3_k127_4689712_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 1.865e-308 957.0
LYD3_k127_4689712_1 amino acid K11959 - - 2.113e-236 737.0
LYD3_k127_4689712_10 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.000000211 60.0
LYD3_k127_4689712_2 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 351.0
LYD3_k127_4689712_3 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002821 282.0
LYD3_k127_4689712_4 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002554 275.0
LYD3_k127_4689712_5 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000000000000001912 215.0
LYD3_k127_4689712_6 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.0000000000000000000000000000000000000000000000002916 181.0
LYD3_k127_4689712_7 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.00000000000000000000000000000000000000000000001115 175.0
LYD3_k127_4689712_8 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.0000000000000000000000000000000000000000000002764 175.0
LYD3_k127_4689712_9 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000004144 71.0
LYD3_k127_4690461_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 5.659e-212 672.0
LYD3_k127_4690461_1 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 558.0
LYD3_k127_4690461_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008641 556.0
LYD3_k127_4690461_3 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 480.0
LYD3_k127_4690461_4 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.0000000000000000000000000000000000000000000000000000000000000000000002068 240.0
LYD3_k127_4690461_5 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.00000000000000000000000000000000000000004974 153.0
LYD3_k127_4691095_0 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.000000000000000000000000000000000000000000003877 168.0
LYD3_k127_4691095_1 TIGRFAM yecA family protein K07039 - - 0.0000000000000000000000000000000005463 141.0
LYD3_k127_4691095_2 - - - - 0.00000000000003746 86.0
LYD3_k127_4691953_0 PrkA AAA domain K07180 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004546 549.0
LYD3_k127_4691953_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 543.0
LYD3_k127_4691953_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000008529 172.0
LYD3_k127_4695204_0 Transporter K11688,K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 481.0
LYD3_k127_4695204_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 418.0
LYD3_k127_4695204_10 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.000000000000000448 84.0
LYD3_k127_4695204_11 2 iron, 2 sulfur cluster binding K02192 - - 0.00000009978 63.0
LYD3_k127_4695204_2 Iron-storage protein, whose ferroxidase center binds Fe(2 ) ions, oxidizes them by dioxygen to Fe(3 ), and participates in the subsequent Fe(3 ) oxide mineral core formation within the central cavity of the protein complex K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000000005149 215.0
LYD3_k127_4695204_3 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000000000000000000000007759 207.0
LYD3_k127_4695204_4 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000000000000000008822 201.0
LYD3_k127_4695204_5 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000003299 173.0
LYD3_k127_4695204_6 Putative zinc-finger - - - 0.0000000000000000000000000000000000000000052 168.0
LYD3_k127_4695204_7 Ribosomal protein S18 K02963 - - 0.000000000000000000000000000000000007754 138.0
LYD3_k127_4695204_8 zinc protease protein - - - 0.00000000000000000000000002937 111.0
LYD3_k127_4695204_9 cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.0000000000000000008266 88.0
LYD3_k127_4699733_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 468.0
LYD3_k127_4699733_1 Ammonium Transporter Family K03320,K06580 - - 0.00000000000000000000000000000000000000000000000000000000002394 207.0
LYD3_k127_4709672_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 608.0
LYD3_k127_4709672_1 Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 514.0
LYD3_k127_4709672_2 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007233 340.0
LYD3_k127_4709672_3 TIGRFAM sulfur relay protein, TusE DsrC DsvC family K11179 - - 0.000000000000000000000001714 104.0
LYD3_k127_4711219_0 (ABC) transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 385.0
LYD3_k127_4711219_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 300.0
LYD3_k127_4711219_2 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.00000000000000000000000000000000000000000001022 164.0
LYD3_k127_4711219_3 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000009944 156.0
LYD3_k127_4711219_4 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.0000000000000000000000000000000002579 138.0
LYD3_k127_4711219_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000000001506 135.0
LYD3_k127_4719132_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009907 529.0
LYD3_k127_4719132_1 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 514.0
LYD3_k127_4719132_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000007521 246.0
LYD3_k127_4719132_3 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.00000000000000000000000000000000000000000000003723 190.0
LYD3_k127_4722052_0 ABC-type (Unclassified) transport system, ATPase component K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 378.0
LYD3_k127_4722052_1 protein conserved in bacteria K11719 - - 0.0000000000000000000000000000000003627 138.0
LYD3_k127_4722052_2 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000003428 141.0
LYD3_k127_4722052_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000006087 113.0
LYD3_k127_4725609_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 285.0
LYD3_k127_4725609_1 uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000004702 270.0
LYD3_k127_4725609_2 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000000001365 234.0
LYD3_k127_4725609_3 TPM domain K08988 - - 0.00000000000000000000000000000000000000000000000001666 187.0
LYD3_k127_4725609_4 Major Facilitator - - - 0.00000000000000000000000000000000000000000000002189 174.0
LYD3_k127_4725609_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.0000000001636 63.0
LYD3_k127_4729160_0 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009285 526.0
LYD3_k127_4729160_1 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 497.0
LYD3_k127_4729160_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005851 443.0
LYD3_k127_4729160_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003172 269.0
LYD3_k127_4736246_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007096 586.0
LYD3_k127_4736246_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 563.0
LYD3_k127_4736246_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 494.0
LYD3_k127_4736246_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 437.0
LYD3_k127_4736246_4 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 387.0
LYD3_k127_4736246_5 Ammonia monooxygenase K07120 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 305.0
LYD3_k127_4736246_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000000005428 123.0
LYD3_k127_4736246_7 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 0.000000000000000005501 96.0
LYD3_k127_4736246_8 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000001964 74.0
LYD3_k127_4736246_9 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00007869 51.0
LYD3_k127_4737166_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 1.261e-268 838.0
LYD3_k127_4737391_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 3.429e-257 805.0
LYD3_k127_4737391_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003702 409.0
LYD3_k127_4737391_2 Cupin domain - - - 0.000000000000000000000000000000000228 138.0
LYD3_k127_4737391_3 Bacterial protein of unknown function (DUF883) - - - 0.0000000000000000000007014 101.0
LYD3_k127_4737391_4 membrane - - - 0.00000000000006424 77.0
LYD3_k127_4737391_5 glyoxalase III activity K00799 - 2.5.1.18 0.0000368 49.0
LYD3_k127_4745609_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 1.955e-275 867.0
LYD3_k127_4745609_1 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 342.0
LYD3_k127_4745826_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 418.0
LYD3_k127_4745826_1 Peptidase family M23 K08259 - 3.4.24.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 316.0
LYD3_k127_4745826_2 Protein of unknown function (DUF721) - - - 0.00005887 53.0
LYD3_k127_4745826_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0002532 48.0
LYD3_k127_4761943_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005182 487.0
LYD3_k127_4761943_1 transposition K07483,K07497 - - 0.00000000000000000000004649 103.0
LYD3_k127_4763957_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 1.443e-227 714.0
LYD3_k127_4763957_1 Acyl-CoA synthetase (NDP forming) K09181 - - 3.556e-212 694.0
LYD3_k127_4763957_2 oxidoreductase activity - - - 0.000000000000000000000000000000000001277 140.0
LYD3_k127_4763957_3 Universal stress protein family - - - 0.0000000000000000000000000000938 121.0
LYD3_k127_4764205_0 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002151 408.0
LYD3_k127_4764205_1 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009676 286.0
LYD3_k127_4764205_2 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004275 271.0
LYD3_k127_4764205_3 Belongs to the MenA family. Type 1 subfamily K02548 - 2.5.1.74 0.00000000000000000000000000000000000000000000000000000000000000000000000000007558 273.0
LYD3_k127_4764205_4 Peptidoglycan-binding LysM - - - 0.000000000000000000000000000000000000000000000000000000000000002515 222.0
LYD3_k127_4764205_5 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000001969 195.0
LYD3_k127_4775772_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 4.84e-322 994.0
LYD3_k127_4775772_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006812 504.0
LYD3_k127_4775772_2 Aminotransferase class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 493.0
LYD3_k127_4775772_3 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 422.0
LYD3_k127_4775772_4 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 325.0
LYD3_k127_4775772_5 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000006175 262.0
LYD3_k127_4775772_6 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009682 257.0
LYD3_k127_4775772_7 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000002575 214.0
LYD3_k127_4775772_8 OmpA family K03286 - - 0.000000000000000000000000000000000000000000000000000663 194.0
LYD3_k127_4775772_9 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000008096 175.0
LYD3_k127_4781920_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.859e-224 722.0
LYD3_k127_4781920_1 uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004174 278.0
LYD3_k127_4783630_0 Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate K01815 - 5.3.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 462.0
LYD3_k127_4783630_1 2-deoxy-D-gluconate 3-dehydrogenase K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 366.0
LYD3_k127_4783630_2 ABC transporter substrate binding protein K01989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006894 291.0
LYD3_k127_4783630_3 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000009183 211.0
LYD3_k127_4783630_4 Thioredoxin K03671 - - 0.00000000000000000000000000000000000000000006464 166.0
LYD3_k127_4783630_5 PFAM Zn-finger in ubiquitin-hydrolases and other protein - - - 0.000000000002494 76.0
LYD3_k127_4789307_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 516.0
LYD3_k127_4789307_1 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 440.0
LYD3_k127_4789307_2 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009183 333.0
LYD3_k127_4789307_3 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005989 336.0
LYD3_k127_4789307_4 Alpha beta K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000005634 229.0
LYD3_k127_4789307_5 ferredoxin - - - 0.0000000000000000000000000000000000000000000004861 171.0
LYD3_k127_4790606_0 Belongs to the UPF0061 (SELO) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 366.0
LYD3_k127_4790606_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 314.0
LYD3_k127_4790606_2 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000003278 244.0
LYD3_k127_4790606_3 Mut7-C ubiquitin - - - 0.000009252 51.0
LYD3_k127_4809660_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 2.446e-228 709.0
LYD3_k127_4809660_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006545 417.0
LYD3_k127_4809660_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 424.0
LYD3_k127_4809660_3 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000003651 124.0
LYD3_k127_4813970_0 Dehydrogenase E1 component K00164 - 1.2.4.2 1.592e-249 777.0
LYD3_k127_4828028_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 394.0
LYD3_k127_4828028_1 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003418 379.0
LYD3_k127_4828028_2 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 301.0
LYD3_k127_4828028_3 COG0464 ATPases of the AAA class - - - 0.0000000000000000000000001449 108.0
LYD3_k127_4831304_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 4.749e-232 726.0
LYD3_k127_4831304_1 L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006633 484.0
LYD3_k127_4831304_2 AMP-binding enzyme C-terminal domain K02363 - 2.7.7.58,6.3.2.14 0.00000000000000000000001273 103.0
LYD3_k127_4834618_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 5.414e-235 748.0
LYD3_k127_4834618_1 Divergent 4Fe-4S mono-cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002608 299.0
LYD3_k127_4834618_2 MASE2 domain K18968 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000004135 254.0
LYD3_k127_4834618_3 COG1020 Non-ribosomal peptide synthetase modules and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000001332 227.0
LYD3_k127_4834618_4 Belongs to the ompA family - - - 0.0000000000000000000002143 108.0
LYD3_k127_4834618_5 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000002617 53.0
LYD3_k127_4847982_0 Peptidase family M28 K02083 - 3.5.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 488.0
LYD3_k127_4847982_1 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736 394.0
LYD3_k127_4847982_2 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009909 340.0
LYD3_k127_4847982_3 transcriptional regulator K13641 GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000002183 248.0
LYD3_k127_4847982_4 response to heat K03668,K09914 - - 0.00000000000209 78.0
LYD3_k127_4853848_0 Virulence factor BrkB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009863 374.0
LYD3_k127_4853848_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 322.0
LYD3_k127_4853848_2 Mut7-C ubiquitin K09122 - - 0.0000000000000000000000000000000000000000000000001008 178.0
LYD3_k127_4857048_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 321.0
LYD3_k127_4857048_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008135 318.0
LYD3_k127_4857048_2 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 283.0
LYD3_k127_4857048_3 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.000000000000000000000000000000000000009272 150.0
LYD3_k127_4857048_4 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000003686 128.0
LYD3_k127_4857048_5 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.0000000000000000000007112 97.0
LYD3_k127_4875121_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 555.0
LYD3_k127_4875121_1 Phosphotransferase enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 365.0
LYD3_k127_4875121_2 ATPase MipZ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003157 263.0
LYD3_k127_4875121_3 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003043 246.0
LYD3_k127_4875121_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000002872 211.0
LYD3_k127_4875121_5 - - - - 0.000002281 53.0
LYD3_k127_4881083_0 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 357.0
LYD3_k127_4881083_1 dehydrogenase, E1 component K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000006907 247.0
LYD3_k127_4894205_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 2.796e-201 629.0
LYD3_k127_4894205_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001939 276.0
LYD3_k127_4923771_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1073.0
LYD3_k127_4926626_0 taurine ABC transporter K15551 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004892 395.0
LYD3_k127_4926626_1 ABC transporter K10831 - 3.6.3.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 381.0
LYD3_k127_4926626_2 binding-protein-dependent transport systems inner membrane component K02050,K15552 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 321.0
LYD3_k127_4926626_3 Aminotransferase class-III K00822 - 2.6.1.18 0.0000000000000000000000000000000000000000000000000000000000000009079 222.0
LYD3_k127_4931164_0 Arsenical pump membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004766 586.0
LYD3_k127_4931164_1 Belongs to the HpcH HpaI aldolase family K02510,K12660 - 4.1.2.52,4.1.2.53 0.000000000000000000000000000000000000000000000000000000000000000000003941 243.0
LYD3_k127_4931164_2 PFAM aminotransferase, class I and II K14287 - 2.6.1.88 0.0000000000000001256 80.0
LYD3_k127_4931164_3 PFAM CBS domain containing protein - - - 0.0003026 49.0
LYD3_k127_4935968_0 glycosyl transferase family 2 K20444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009574 511.0
LYD3_k127_4935968_1 ABC-type sugar transport system, permease component K02026,K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008454 381.0
LYD3_k127_4935968_2 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003812 264.0
LYD3_k127_4935968_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000003638 226.0
LYD3_k127_4954298_0 Glycosyltransferases involved in cell wall biogenesis K20444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009044 512.0
LYD3_k127_4954298_1 COG1134 ABC-type polysaccharide polyol phosphate transport system, ATPase component K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 426.0
LYD3_k127_4954298_2 CobQ/CobB/MinD/ParA nucleotide binding domain K08252,K16692 - 2.7.10.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008307 405.0
LYD3_k127_4954298_3 Bacterial sugar transferase K03606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 408.0
LYD3_k127_4954298_4 PFAM ABC-2 type transporter K01992,K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007326 276.0
LYD3_k127_4954298_5 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K03215,K06969,K14292 - 2.1.1.190,2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000002453 235.0
LYD3_k127_4954298_6 hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000385 225.0
LYD3_k127_4954298_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000004456 199.0
LYD3_k127_4954298_8 COG0463 Glycosyltransferases involved in cell wall biogenesis K19354 GO:0003674,GO:0003824,GO:0005575,GO:0006950,GO:0007154,GO:0008150,GO:0008194,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015020,GO:0016020,GO:0016036,GO:0016740,GO:0016757,GO:0016758,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0050896,GO:0051716,GO:0071496 - 0.000000000000000000000000000000000000000000000007395 186.0
LYD3_k127_4954298_9 - - - - 0.000001343 59.0
LYD3_k127_4959651_0 Poly-beta-hydroxybutyrate polymerase N terminal K03821 - - 1.206e-268 861.0
LYD3_k127_4959651_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 517.0
LYD3_k127_4959651_2 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 299.0
LYD3_k127_4959651_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000004824 195.0
LYD3_k127_4959651_4 DNA helicase K03654 - 3.6.4.12 0.00000002535 55.0
LYD3_k127_4987015_0 Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane K07791,K07792 - - 8.684e-234 728.0
LYD3_k127_4987015_1 outer membrane porin, OprD family - - - 0.00000000000000000000000000000000000000000001903 174.0
LYD3_k127_4998668_0 ABC transporter K06020 - 3.6.3.25 2.288e-286 894.0
LYD3_k127_4998668_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000001141 253.0
LYD3_k127_4999048_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 448.0
LYD3_k127_4999048_1 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase - - - 0.00000000000000000000000000000000000000000000000005719 181.0
LYD3_k127_4999048_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000001146 158.0
LYD3_k127_5012593_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 346.0
LYD3_k127_5012593_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000001683 182.0
LYD3_k127_5021619_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 9.158e-226 740.0
LYD3_k127_5021619_1 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 595.0
LYD3_k127_5021619_2 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003539 250.0
LYD3_k127_5021619_3 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000003785 212.0
LYD3_k127_5021619_4 TIGRFAM malate synthase A K01638 - 2.3.3.9 0.000000000000000000000000000000000003242 138.0
LYD3_k127_5050216_0 Malic enzyme K00029 - 1.1.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 511.0
LYD3_k127_5058567_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1179.0
LYD3_k127_5058567_1 Flavocytochrome c sulphide dehydrogenase, flavin-binding K05301,K17218 - 1.8.2.1,1.8.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000309 274.0
LYD3_k127_5058567_2 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.000000000000000000000000000000000000000001658 157.0
LYD3_k127_5076231_0 PGAP1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 396.0
LYD3_k127_5076231_1 Ribosomal protein L17 K02879 - - 0.00000000000000000000002826 99.0
LYD3_k127_5108923_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 4.223e-217 683.0
LYD3_k127_5108923_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 319.0
LYD3_k127_5108923_2 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003267 314.0
LYD3_k127_5108923_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000000007315 225.0
LYD3_k127_5108923_4 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000004341 178.0
LYD3_k127_5112544_0 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296,K18138 - - 2.496e-230 720.0
LYD3_k127_5112544_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 534.0
LYD3_k127_5112544_2 Uncharacterized protein conserved in bacteria (DUF2237) - - - 0.000000000000000000000000000000000000000000000000005482 188.0
LYD3_k127_5112544_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. K01120 - 3.1.4.17 0.0000000000000000000000000000000000000004356 158.0
LYD3_k127_5149042_0 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008555 332.0
LYD3_k127_5149042_1 - - - - 0.000000000000000000000000000000000000000000003147 167.0
LYD3_k127_5149042_2 Peptidase S24-like - - - 0.0000000000000000000000000000005739 130.0
LYD3_k127_5149042_3 - - - - 0.000000000003478 74.0
LYD3_k127_5167797_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 445.0
LYD3_k127_5167797_1 belongs to the aldehyde dehydrogenase family K00130 - 1.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 353.0
LYD3_k127_5181062_0 Bacterial trigger factor protein (TF) K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 432.0
LYD3_k127_5181062_1 squalene synthase HpnC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 306.0
LYD3_k127_5181062_2 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000749 158.0
LYD3_k127_5181062_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000009663 79.0
LYD3_k127_5181129_0 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008172 536.0
LYD3_k127_5181129_1 MacB-like periplasmic core domain K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 477.0
LYD3_k127_5181129_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 312.0
LYD3_k127_5181129_3 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000001337 243.0
LYD3_k127_5213443_0 Glutathione S-transferase K03599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 336.0
LYD3_k127_5213443_1 stringent starvation protein B K03600 - - 0.000000000000000000000000000000001244 134.0
LYD3_k127_5213443_2 Cytochrome C1 K00413 - - 0.0000000000000000001435 88.0
LYD3_k127_5280216_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1048.0
LYD3_k127_5280216_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.135e-245 786.0
LYD3_k127_5280216_2 ABC-type multidrug transport system, ATPase and permease K06147 - - 2.868e-226 716.0
LYD3_k127_5280216_3 Aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009321 593.0
LYD3_k127_5280216_4 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009822 249.0
LYD3_k127_5280216_5 Low molecular weight phosphatase family K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000003701 183.0
LYD3_k127_5280216_6 PFAM MAPEG family K00799 GO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016740,GO:0016765,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 2.5.1.18 0.00000000000000000000000000000000000000007724 156.0
LYD3_k127_5280216_7 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000001817 156.0
LYD3_k127_528156_0 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 329.0
LYD3_k127_528156_1 Glycosyl transferase family 41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 324.0
LYD3_k127_528156_2 Protein of unknown function (DUF3047) - - - 0.000000000000000000000000000000000000000000000000001989 189.0
LYD3_k127_52839_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 426.0
LYD3_k127_52839_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000001326 246.0
LYD3_k127_52839_2 Belongs to the skp family K06142 - - 0.00000000000000000000000000000000000000000000000000000009493 199.0
LYD3_k127_5294627_0 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 398.0
LYD3_k127_5294627_1 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 334.0
LYD3_k127_5294627_2 protein conserved in bacteria K09921 - - 0.00000000000000000000000000000000000000000000000000000000002953 214.0
LYD3_k127_5294627_3 PFAM DinB family - - - 0.000000000002716 66.0
LYD3_k127_5305207_0 Belongs to the TPP enzyme family K01577 - 4.1.1.8 1.534e-231 724.0
LYD3_k127_5305207_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 518.0
LYD3_k127_5325638_0 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000002942 229.0
LYD3_k127_5325638_1 Type II secretion system (T2SS), protein J - - - 0.0000000000000000000000000000000009447 144.0
LYD3_k127_5325638_2 general secretion pathway protein K K02460 - - 0.0000000000000000000003627 109.0
LYD3_k127_5325638_3 Type II secretion system (T2SS), protein I K02458 - - 0.00000000000000000005688 102.0
LYD3_k127_5325638_4 General secretion pathway protein K02457 - - 0.000003268 56.0
LYD3_k127_5356934_0 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 498.0
LYD3_k127_5356934_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000002804 139.0
LYD3_k127_5356934_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000000000614 72.0
LYD3_k127_5356934_3 - - - - 0.000000000002791 74.0
LYD3_k127_5356934_4 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000006804 55.0
LYD3_k127_5360201_0 Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers K07518 - 3.1.1.22 1.333e-194 621.0
LYD3_k127_5362597_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 1.819e-220 690.0
LYD3_k127_5362597_1 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 481.0
LYD3_k127_5362597_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 375.0
LYD3_k127_5362597_3 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 305.0
LYD3_k127_5362597_4 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000002271 198.0
LYD3_k127_5362597_5 cytochrome C oxidoreductase subunit B - - - 0.000000000000006868 86.0
LYD3_k127_5379688_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 546.0
LYD3_k127_5379688_1 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005256 470.0
LYD3_k127_5379688_2 PFAM Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 386.0
LYD3_k127_5379688_3 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000009334 188.0
LYD3_k127_5379688_4 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.00000000000000000000000000000000000000000006691 165.0
LYD3_k127_5391632_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179,K08941 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004902 506.0
LYD3_k127_5391632_1 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002721 398.0
LYD3_k127_5391632_2 - - - - 0.000000000000000000000000000000000000000000000000000645 198.0
LYD3_k127_5391632_3 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000001489 166.0
LYD3_k127_5391632_4 Staphylococcal nuclease homologues - - - 0.00000000000000000000000000000000000003944 151.0
LYD3_k127_5391632_5 Gaf domain protein - - - 0.0000000000000000005563 96.0
LYD3_k127_5391632_6 - - - - 0.00000000000001796 81.0
LYD3_k127_5406232_0 Oxidoreductase - - - 1.396e-207 660.0
LYD3_k127_5406232_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 362.0
LYD3_k127_5406232_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000001096 196.0
LYD3_k127_5406232_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems - - - 0.00000233 58.0
LYD3_k127_540862_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 1.472e-301 938.0
LYD3_k127_540862_1 protein involved in response to NO K07234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003558 327.0
LYD3_k127_540862_2 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000005205 236.0
LYD3_k127_5409981_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 8.987e-297 926.0
LYD3_k127_5409981_1 Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 557.0
LYD3_k127_5409981_2 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000505 307.0
LYD3_k127_5409981_4 Pilin (bacterial filament) K02650 - - 0.00000000000000000000000000000000000000000000000002249 184.0
LYD3_k127_5409981_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000718 125.0
LYD3_k127_5411415_0 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 5.487e-238 750.0
LYD3_k127_5411415_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 7.593e-202 643.0
LYD3_k127_5411415_2 amino acid K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 519.0
LYD3_k127_5411415_3 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 420.0
LYD3_k127_5411415_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000000000000004986 231.0
LYD3_k127_5411415_5 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000000000000000000000000000000000000000000000000002123 201.0
LYD3_k127_5411415_6 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000004706 97.0
LYD3_k127_5430373_0 Alcohol dehydrogenase GroES-like domain K07538 - 1.1.1.368 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 400.0
LYD3_k127_5430373_1 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 396.0
LYD3_k127_5449962_0 Type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000376 508.0
LYD3_k127_5449962_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007267 354.0
LYD3_k127_5449962_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000003375 117.0
LYD3_k127_5450691_0 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 580.0
LYD3_k127_5450691_1 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000000000000000000000000000000000000000002778 226.0
LYD3_k127_5450691_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000001844 94.0
LYD3_k127_5456868_0 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 392.0
LYD3_k127_5456868_1 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 326.0
LYD3_k127_5456868_2 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009982 316.0
LYD3_k127_5456868_3 RQC K03654 - 3.6.4.12 0.00000000000000000000000000000002796 139.0
LYD3_k127_5467284_0 permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008457 503.0
LYD3_k127_5467284_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 503.0
LYD3_k127_5467284_2 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003022 483.0
LYD3_k127_5467284_3 EVE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003 240.0
LYD3_k127_5467284_4 Protein of unknown function (DUF1345) - - - 0.000000000000000000000000000000000000000000000003922 183.0
LYD3_k127_5467284_5 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.000000000000000000000000000001001 124.0
LYD3_k127_5467284_6 Protein of unknown function (DUF3096) - - - 0.00000000000002142 74.0
LYD3_k127_5467284_7 - - - - 0.00000000000002488 74.0
LYD3_k127_5467284_9 Entericidin EcnA/B family - - - 0.000006928 55.0
LYD3_k127_5494315_0 carboxylase K01965 - 6.4.1.3 6.293e-299 930.0
LYD3_k127_5494315_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 522.0
LYD3_k127_5494315_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 370.0
LYD3_k127_5494315_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 343.0
LYD3_k127_5494315_4 Lactoylglutathione lyase K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000003416 257.0
LYD3_k127_5494315_5 Protein of unknown function (DUF3530) - - - 0.00000000000000000000000000000000000000000000000003061 189.0
LYD3_k127_5506109_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 435.0
LYD3_k127_5506109_1 Transferase hexapeptide repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008533 241.0
LYD3_k127_5506109_2 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000002055 121.0
LYD3_k127_5511343_0 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002845 457.0
LYD3_k127_5511343_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 440.0
LYD3_k127_5511343_2 HlyD family K01993 - - 0.00000000000000000000000007625 108.0
LYD3_k127_5512070_0 PFAM acyl-CoA dehydrogenase domain protein K00249,K07545 - 1.3.8.3,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005832 561.0
LYD3_k127_5512070_1 Subtilase family K14645 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 496.0
LYD3_k127_5512070_2 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 347.0
LYD3_k127_5512070_3 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 323.0
LYD3_k127_5512070_4 - - - - 0.0000000000000000000000000000000000000000003123 177.0
LYD3_k127_5512070_5 RNB K01147 - 3.1.13.1 0.0003054 47.0
LYD3_k127_5523424_0 TIGRFAM ATP-dependent helicase HrpA K03578 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 476.0
LYD3_k127_5523424_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 443.0
LYD3_k127_5523424_2 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004502 382.0
LYD3_k127_5523424_3 molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003874 280.0
LYD3_k127_5523424_4 MaoC like domain - - - 0.00000000000000000000000000000000000000000001471 169.0
LYD3_k127_5533614_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 388.0
LYD3_k127_5533614_1 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 367.0
LYD3_k127_5533614_2 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 343.0
LYD3_k127_5533614_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000004389 164.0
LYD3_k127_5543332_0 NAD(P)H-binding K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001136 284.0
LYD3_k127_5543332_1 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000002891 188.0
LYD3_k127_5544767_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 1266.0
LYD3_k127_5550632_0 PFAM Mannosyl oligosaccharide glucosidase - - - 9.12e-305 949.0
LYD3_k127_5550632_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01835 - 5.4.2.2 0.0000000007844 62.0
LYD3_k127_5553593_0 TldD PmbA family protein K03568 - - 1.017e-218 691.0
LYD3_k127_5553593_1 abc transporter K01996 - - 0.0000000000000000000000000000000000000000000000003412 177.0
LYD3_k127_5553593_2 SnoaL-like domain - - - 0.00000000000000000000000000001533 123.0
LYD3_k127_5553593_3 heptosyltransferase K02843 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00000000000000000000000001222 110.0
LYD3_k127_5553593_4 SMP-30/Gluconolaconase/LRE-like region - - - 0.000000007603 59.0
LYD3_k127_5594280_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009387 597.0
LYD3_k127_5594280_1 DNA polymerase III tau subunit V interacting with alpha K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006831 394.0
LYD3_k127_5594280_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 298.0
LYD3_k127_5594280_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000000000000000000177 179.0
LYD3_k127_5597924_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 377.0
LYD3_k127_5597924_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 349.0
LYD3_k127_5614041_0 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003299 374.0
LYD3_k127_5614041_1 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 303.0
LYD3_k127_5614041_2 oxaloacetate decarboxylase activity K01572 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000002864 240.0
LYD3_k127_5614041_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04750 - - 0.0000000000000000000000000000000000000000000000000000000000000004029 224.0
LYD3_k127_5614041_4 Restriction endonuclease K07448,K07452 - - 0.000000000000000000000000000000000000000000000000000000136 200.0
LYD3_k127_5614041_5 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.00000000000000000000000000000000000000000000000000004867 197.0
LYD3_k127_5675299_0 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 4.883e-221 721.0
LYD3_k127_5675299_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 471.0
LYD3_k127_5675299_2 Cytochrome c3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 432.0
LYD3_k127_5675299_3 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 306.0
LYD3_k127_5675299_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000001807 160.0
LYD3_k127_5676739_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.032e-263 831.0
LYD3_k127_5676739_1 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 441.0
LYD3_k127_5676739_2 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 419.0
LYD3_k127_5676739_3 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008102 334.0
LYD3_k127_5676739_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000001362 263.0
LYD3_k127_5676739_5 phosphohistidine phosphatase K08296 - - 0.0000000000000000000000000000000000000000000000000002014 191.0
LYD3_k127_5679196_0 Sel1 domain protein repeat-containing protein K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009341 251.0
LYD3_k127_5679196_1 Transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000001254 225.0
LYD3_k127_5679196_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000005237 97.0
LYD3_k127_5681406_0 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 428.0
LYD3_k127_5681406_1 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000001012 239.0
LYD3_k127_5688032_0 ABC-type dipeptide transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 409.0
LYD3_k127_5688032_1 Lysine exporter protein (Lyse ygga) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000123 250.0
LYD3_k127_5688032_2 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000000000000008774 198.0
LYD3_k127_5688032_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.00000000000000000000000000000000000000000000000000002593 205.0
LYD3_k127_5688032_4 Opioid growth factor receptor (OGFr) conserved region - - - 0.0000000000000000000000000000000000000000000008835 171.0
LYD3_k127_5688032_5 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K03790 - 2.3.1.128 0.000000000000000000000000005559 117.0
LYD3_k127_5688032_6 Cysteine-rich CWC - - - 0.0000000000000004405 79.0
LYD3_k127_5688032_7 Thioesterase superfamily - - - 0.0000001097 53.0
LYD3_k127_5693076_0 Putative regulatory protein - - - 0.000000000000000000000439 97.0
LYD3_k127_5693076_1 CDGSH-type zinc finger. Function unknown. - - - 0.00000000000000002249 84.0
LYD3_k127_5693076_2 diguanylate cyclase K18968 - 2.7.7.65 0.0000000000000000482 89.0
LYD3_k127_5693076_3 Methyltransferase - - - 0.0000000000000002156 85.0
LYD3_k127_5693076_4 SMART zinc finger CDGSH-type domain protein - - - 0.0005787 45.0
LYD3_k127_5696916_0 SMART Tetratricopeptide domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 454.0
LYD3_k127_5696916_1 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 307.0
LYD3_k127_5696916_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000005506 211.0
LYD3_k127_5824105_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004351 494.0
LYD3_k127_5824105_1 Membrane-bound lytic murein transglycosylase K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 436.0
LYD3_k127_5824105_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 428.0
LYD3_k127_5824105_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000000002036 254.0
LYD3_k127_5824105_4 Conserved protein of DIM6 NTAB family - - - 0.000000000000000000000000000000000000000000000004291 178.0
LYD3_k127_5824105_5 Protein of unknown function (DUF493) K09158 - - 0.000000000000000000000000002377 127.0
LYD3_k127_5824105_6 ApaG domain - - - 0.00000000000000001697 82.0
LYD3_k127_589451_0 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001298 259.0
LYD3_k127_589451_1 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000004519 183.0
LYD3_k127_589451_2 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000006864 181.0
LYD3_k127_595040_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009224 321.0
LYD3_k127_595040_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003597 252.0
LYD3_k127_6001533_0 MmgE/PrpD family - - - 1.728e-202 638.0
LYD3_k127_6001533_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 459.0
LYD3_k127_6001533_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 422.0
LYD3_k127_6001533_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000189 288.0
LYD3_k127_6001533_4 MgtC family K07507 - - 0.000000000000000000000000000000007578 132.0
LYD3_k127_6024989_0 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009303 598.0
LYD3_k127_6024989_1 COG0044 Dihydroorotase and related cyclic amidohydrolases K01464 - 3.5.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 536.0
LYD3_k127_6024989_2 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009796 281.0
LYD3_k127_6028123_0 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004761 565.0
LYD3_k127_6028123_1 Elongation factor G, domain IV K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 446.0
LYD3_k127_6028123_2 COG3540 Phosphodiesterase alkaline phosphatase D K01113 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009411 342.0
LYD3_k127_6028123_3 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004882 263.0
LYD3_k127_6028123_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000002496 198.0
LYD3_k127_6028123_5 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000008274 183.0
LYD3_k127_6028123_6 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000000000002847 145.0
LYD3_k127_6028173_0 Ion transport protein K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009527 412.0
LYD3_k127_6028173_1 - - - - 0.00000000000000000000000000000000000006181 165.0
LYD3_k127_6028173_2 Beta/Gamma crystallin - - - 0.0000000000000000000000000000000000004685 152.0
LYD3_k127_6028173_3 Amidohydrolase family K01461,K06015 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 3.5.1.81,3.5.1.82 0.000000000001519 79.0
LYD3_k127_6028173_4 Forkhead associated domain - - - 0.00000001267 67.0
LYD3_k127_6028173_5 ABC transporter substrate binding protein K01989 - - 0.00000002586 57.0
LYD3_k127_6028173_6 Belongs to the SEDS family - - - 0.000000595 63.0
LYD3_k127_6028173_7 mitotic cytokinesis K16308 GO:0000003,GO:0000070,GO:0000086,GO:0000278,GO:0000280,GO:0000281,GO:0000819,GO:0000910,GO:0000912,GO:0000915,GO:0001726,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005795,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007059,GO:0007088,GO:0007091,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0008064,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0010256,GO:0010564,GO:0010721,GO:0010769,GO:0010771,GO:0010965,GO:0010975,GO:0010977,GO:0012501,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016358,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017048,GO:0019538,GO:0019899,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030036,GO:0030154,GO:0030165,GO:0030182,GO:0030496,GO:0030832,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0031175,GO:0031252,GO:0031267,GO:0031344,GO:0031345,GO:0031984,GO:0031985,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032954,GO:0032956,GO:0032970,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0036211,GO:0036477,GO:0042995,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0044837,GO:0044839,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0048232,GO:0048285,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0051020,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051276,GO:0051301,GO:0051302,GO:0051321,GO:0051402,GO:0051493,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051960,GO:0051961,GO:0051983,GO:0060284,GO:0061640,GO:0065007,GO:0065008,GO:0070938,GO:0070997,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090068,GO:0097110,GO:0097458,GO:0098590,GO:0098791,GO:0098813,GO:0099568,GO:0110020,GO:0110053,GO:0120025,GO:0120035,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1901564,GO:1902903,GO:1903046,GO:1903047,GO:1905818,GO:2000026,GO:2000171,GO:2000431 2.7.11.1 0.0007618 53.0
LYD3_k127_6033404_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.633e-259 809.0
LYD3_k127_6033404_1 Phosphoribulokinase K00855 - 2.7.1.19 0.000000000000000000000006819 101.0
LYD3_k127_6036094_0 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000007475 265.0
LYD3_k127_6036094_1 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000001917 149.0
LYD3_k127_6036094_2 Belongs to the UPF0312 family - - - 0.0000000000001418 72.0
LYD3_k127_6040674_0 Prolyl oligopeptidase - - - 5.605e-214 684.0
LYD3_k127_6040674_1 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 318.0
LYD3_k127_6040674_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009085 304.0
LYD3_k127_6040674_3 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 302.0
LYD3_k127_6043314_0 MmgE/PrpD family K01720 - 4.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 307.0
LYD3_k127_6043314_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.00000000000000000000000000000000000000000000000000000004041 198.0
LYD3_k127_6043314_2 Protein of unknown function (DUF3617) - - - 0.0000000000000000000000006282 111.0
LYD3_k127_6061019_0 iron ion homeostasis - - - 1.124e-210 668.0
LYD3_k127_6065414_0 ammonium transporter K03320 - - 1.271e-194 619.0
LYD3_k127_6065414_1 Belongs to the P(II) protein family K04752 - - 0.00000000000000000000000000000000000000000000000000000000016 207.0
LYD3_k127_6065414_2 PFAM DinB family - - - 0.000000000000000000000000000000000000001803 156.0
LYD3_k127_6065843_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002691 413.0
LYD3_k127_6065843_1 ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009358 348.0
LYD3_k127_6065843_2 PFAM ABC transporter related K01996 - - 0.0000000000000000000000000000008684 123.0
LYD3_k127_6065843_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000002367 117.0
LYD3_k127_6066409_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 6.77e-322 1020.0
LYD3_k127_6066409_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 297.0
LYD3_k127_6066409_2 peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000001478 187.0
LYD3_k127_6066409_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000008262 167.0
LYD3_k127_6066409_4 Short-chain dehydrogenase K16216 - 1.1.1.320 0.000000000001043 72.0
LYD3_k127_6066409_5 - - - - 0.00002109 56.0
LYD3_k127_6074281_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 4.681e-249 774.0
LYD3_k127_6074281_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 7.928e-230 722.0
LYD3_k127_6074281_10 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.0000000000000000000000000000000000000000000000002862 178.0
LYD3_k127_6074281_11 Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors K12973 - 2.3.1.251 0.00000000000000000000000000000000000003155 151.0
LYD3_k127_6074281_12 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 GO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019752,GO:0022611,GO:0030272,GO:0032502,GO:0034641,GO:0035999,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0046653,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.2 0.0000000000000000000000000000004558 142.0
LYD3_k127_6074281_13 Bacterial regulatory protein, Fis family K03557 - - 0.000000000000000000009167 95.0
LYD3_k127_6074281_14 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000000001231 93.0
LYD3_k127_6074281_15 - - - - 0.0000000008311 70.0
LYD3_k127_6074281_2 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 607.0
LYD3_k127_6074281_3 aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001846 548.0
LYD3_k127_6074281_4 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 470.0
LYD3_k127_6074281_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 453.0
LYD3_k127_6074281_6 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 337.0
LYD3_k127_6074281_7 FAD binding domain K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009521 315.0
LYD3_k127_6074281_8 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 313.0
LYD3_k127_6074281_9 Psort location Cytoplasmic, score 8.96 K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000000000000008851 230.0
LYD3_k127_6074366_0 PFAM alanine racemase domain protein K19967 - 4.1.2.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003722 458.0
LYD3_k127_6074366_1 Belongs to the malic enzymes family K00029 - 1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 316.0
LYD3_k127_6074366_2 Luciferase family - - - 0.00000000000000000000000000000000000000000007359 164.0
LYD3_k127_6086480_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006731 494.0
LYD3_k127_6086480_1 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005794 366.0
LYD3_k127_6086480_2 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 332.0
LYD3_k127_6086709_0 Glucose-6-phosphate dehydrogenase, NAD binding domain K00036 - 1.1.1.363,1.1.1.49 2.577e-238 743.0
LYD3_k127_6086709_1 Amp-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 573.0
LYD3_k127_6086709_2 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 518.0
LYD3_k127_6086709_3 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000001175 251.0
LYD3_k127_6086709_4 - - - - 0.0000000000000000001766 91.0
LYD3_k127_6086709_5 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.000000000001793 72.0
LYD3_k127_6087779_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 1e-323 999.0
LYD3_k127_6093814_0 PFAM transglutaminase domain protein K22452 - 2.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002362 458.0
LYD3_k127_6093814_1 RNA polymerase sigma factor K03087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 372.0
LYD3_k127_6093814_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 356.0
LYD3_k127_6093814_3 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 345.0
LYD3_k127_6093814_4 Lysin motif K06194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001498 271.0
LYD3_k127_6093814_5 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000001196 263.0
LYD3_k127_6093814_6 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000000000000000000000000000000000000005035 206.0
LYD3_k127_6093814_7 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.00000000000072 68.0
LYD3_k127_6095094_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 427.0
LYD3_k127_6095094_1 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000000000000000000000000002131 217.0
LYD3_k127_6100314_0 PFAM binding-protein-dependent transport systems inner membrane component K02011 - - 3.832e-218 683.0
LYD3_k127_6100314_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02017,K02052 - 3.6.3.29,3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004192 519.0
LYD3_k127_6100314_2 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.000000000000000000000000000000000000000000000009314 188.0
LYD3_k127_6103173_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0 1182.0
LYD3_k127_6103173_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.0 1158.0
LYD3_k127_6103173_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 1.172e-194 630.0
LYD3_k127_6103173_3 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179,K08941 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000008349 255.0
LYD3_k127_6103173_4 PFAM Short-chain dehydrogenase reductase SDR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009826 253.0
LYD3_k127_6103173_5 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000002412 189.0
LYD3_k127_6103173_6 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.00000000000000000000000000000000000000000000000003911 194.0
LYD3_k127_6103173_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00179,K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000003915 191.0
LYD3_k127_6103173_8 - - - - 0.000000000000000000000000000000000000000000008295 167.0
LYD3_k127_6103361_0 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 422.0
LYD3_k127_6103361_1 ACT domain protein K00003,K00058,K01754,K04767 - 1.1.1.3,1.1.1.399,1.1.1.95,4.3.1.19 0.000000000000000000000000000000003161 137.0
LYD3_k127_6103361_2 Magnesium transport protein CorA - - - 0.000000000000003941 78.0
LYD3_k127_6103361_3 Malonate decarboxylase, alpha subunit, transporter K01026 - 2.8.3.1 0.0000000008558 61.0
LYD3_k127_6112655_0 glycolate oxidase iron-sulfur subunit K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 535.0
LYD3_k127_6112655_1 FAD linked oxidase K00104,K11472 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006101 358.0
LYD3_k127_6112655_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007805 331.0
LYD3_k127_6112655_3 Histidine kinase K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005492 294.0
LYD3_k127_6112655_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000001349 215.0
LYD3_k127_6112655_5 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000007269 216.0
LYD3_k127_6112655_6 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000000000000000000000000000000000006869 205.0
LYD3_k127_6112655_7 acetyltransferase - - - 0.0000000000000000000000000000000000009182 151.0
LYD3_k127_6114587_0 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 372.0
LYD3_k127_6114587_1 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.00000000000000000000000000000000000000000000000000000000000001266 232.0
LYD3_k127_6114587_2 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000003831 224.0
LYD3_k127_6114587_3 PFAM Mammalian cell entry related domain protein K02067 - - 0.000000000000000000001995 94.0
LYD3_k127_6114587_4 STAS domain K07122 - - 0.0000212 57.0
LYD3_k127_6115326_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001599 291.0
LYD3_k127_6115326_1 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.00000000000000000000000000000000000001937 149.0
LYD3_k127_6115326_2 ATPases associated with a variety of cellular activities - - - 0.0000002889 53.0
LYD3_k127_6123069_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 332.0
LYD3_k127_6123069_1 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000001047 222.0
LYD3_k127_6123069_2 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000001844 214.0
LYD3_k127_6123069_3 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000000000000000000005637 202.0
LYD3_k127_6123069_4 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000002769 181.0
LYD3_k127_6123069_5 Psort location Cytoplasmic, score 8.96 - - - 0.0000002114 52.0
LYD3_k127_6126221_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 5.923e-218 692.0
LYD3_k127_6126221_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001521 412.0
LYD3_k127_6132651_0 PFAM NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 8.488e-269 835.0
LYD3_k127_6132651_1 2-aminobenzoate-CoA ligase K08295 - 6.2.1.32 5.306e-194 619.0
LYD3_k127_6132651_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 528.0
LYD3_k127_6132651_3 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006232 433.0
LYD3_k127_6132651_4 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000000000001039 198.0
LYD3_k127_6132814_0 alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 427.0
LYD3_k127_6134189_0 Quinohemoprotein amine dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 401.0
LYD3_k127_6134189_1 Peptidase family U32 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 404.0
LYD3_k127_6134189_2 ABC transporter transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 388.0
LYD3_k127_6134189_3 peptidase U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002361 275.0
LYD3_k127_6149597_0 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 593.0
LYD3_k127_6149597_1 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000006074 250.0
LYD3_k127_6149597_2 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000007559 200.0
LYD3_k127_6149597_3 CBS domain - - - 0.000000000000000000000000000000000000000000000002286 179.0
LYD3_k127_6151507_0 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 2.293e-320 995.0
LYD3_k127_6151507_1 Belongs to the peptidase M16 family K07263 - - 1.642e-222 713.0
LYD3_k127_6151507_2 TRAP transporter solute receptor TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 469.0
LYD3_k127_6151507_3 MCM2/3/5 family K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 469.0
LYD3_k127_6151507_4 Domain of unknown function (DUF3391) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 315.0
LYD3_k127_6151507_5 EamA-like transporter family K15268 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008939 269.0
LYD3_k127_6151507_6 GGDEF domain containing protein K13243 - 3.1.4.52 0.00000000000000000000000000000000000000000000000000000000000000000001537 250.0
LYD3_k127_6151679_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005201 516.0
LYD3_k127_6151679_1 Membrane transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 361.0
LYD3_k127_6151679_2 Cysteine-rich motif following a subset of SET domains K07117 - - 0.00000000000000000000001012 115.0
LYD3_k127_6156718_0 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 9.67e-288 895.0
LYD3_k127_6156718_1 PFAM alpha beta hydrolase fold K01561 - 3.8.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 417.0
LYD3_k127_6156718_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006753 377.0
LYD3_k127_6156718_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 380.0
LYD3_k127_6157895_0 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 340.0
LYD3_k127_6157895_1 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000001044 196.0
LYD3_k127_6157895_2 peptidase S16 K07157 - - 0.00000000000000000000000000000000000000000000000001057 186.0
LYD3_k127_6157895_3 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000001358 98.0
LYD3_k127_6164050_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 377.0
LYD3_k127_6164050_1 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 349.0
LYD3_k127_6173900_0 PFAM monooxygenase FAD-binding K05712 - 1.14.13.127 3.621e-227 717.0
LYD3_k127_6173900_1 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 535.0
LYD3_k127_6173900_2 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 535.0
LYD3_k127_6173900_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 370.0
LYD3_k127_6173900_4 Protein of unknown function (DUF2783) - - - 0.000000000000000003052 91.0
LYD3_k127_6185118_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 539.0
LYD3_k127_6185118_1 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 351.0
LYD3_k127_6185118_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000005013 184.0
LYD3_k127_6185118_4 - - - - 0.00000000000000000000000000729 121.0
LYD3_k127_6185118_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000000000000000002404 98.0
LYD3_k127_6185118_6 - - - - 0.0000000000000003261 79.0
LYD3_k127_62007_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006719 576.0
LYD3_k127_62007_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K08319 - 1.1.1.31,1.1.1.411 0.0000000000000000000000000000000000000000000000000000000000000000001337 241.0
LYD3_k127_62007_2 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 0.00000000000000000000000000000000000000000000000005012 181.0
LYD3_k127_62007_3 Periplasmic Protein - GO:0003674,GO:0004857,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0016020,GO:0019867,GO:0030234,GO:0030312,GO:0030313,GO:0031975,GO:0043086,GO:0044092,GO:0044462,GO:0044464,GO:0050790,GO:0060241,GO:0065007,GO:0065009,GO:0071944,GO:0098772 - 0.0009664 49.0
LYD3_k127_6201818_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 9.858e-242 753.0
LYD3_k127_6201818_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008756 299.0
LYD3_k127_6217171_0 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 2.482e-289 902.0
LYD3_k127_623249_0 Glycosyl transferase K20444 - - 8.379e-203 664.0
LYD3_k127_623249_1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006361 326.0
LYD3_k127_623249_2 glycosyl transferase family 2 K20444 - - 0.00000000003419 66.0
LYD3_k127_623249_3 - - - - 0.00000115 55.0
LYD3_k127_6250807_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 431.0
LYD3_k127_6250807_1 Pilus assembly protein PilX - - - 0.000000000000848 79.0
LYD3_k127_6250807_2 Type IV Pilus-assembly protein W K02672 - - 0.0000000001619 71.0
LYD3_k127_6260314_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 532.0
LYD3_k127_6260314_1 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 486.0
LYD3_k127_6260314_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009833 450.0
LYD3_k127_6260314_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 364.0
LYD3_k127_6260314_4 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000298 209.0
LYD3_k127_6260314_5 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000009066 190.0
LYD3_k127_6260314_6 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000003223 139.0
LYD3_k127_6273761_0 NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1091.0
LYD3_k127_6273761_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009212 512.0
LYD3_k127_6273761_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000366 471.0
LYD3_k127_6273761_3 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000107 268.0
LYD3_k127_6273761_4 ABC transporter substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001201 263.0
LYD3_k127_62742_0 PFAM Malic enzyme, NAD binding domain K00029 - 1.1.1.40 7.708e-250 782.0
LYD3_k127_62742_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 298.0
LYD3_k127_62742_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000002552 223.0
LYD3_k127_62742_3 NADH dehydrogenase (ubiquinone) activity K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000000000000000002599 169.0
LYD3_k127_6279333_0 CoA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 599.0
LYD3_k127_6279333_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799 552.0
LYD3_k127_6279333_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 436.0
LYD3_k127_6279333_3 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007338 348.0
LYD3_k127_6279333_4 PFAM regulatory protein TetR K05501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004727 245.0
LYD3_k127_6279333_5 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000005555 179.0
LYD3_k127_6279333_7 O-Antigen ligase - - - 0.000000000000000000000000000004022 134.0
LYD3_k127_6302206_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 3.812e-209 665.0
LYD3_k127_6302206_1 surface antigen K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 374.0
LYD3_k127_6302206_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 343.0
LYD3_k127_6302206_3 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000002229 248.0
LYD3_k127_6302206_4 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000000000000004391 186.0
LYD3_k127_6302206_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.00000000000000000000007746 100.0
LYD3_k127_6303616_0 Belongs to the arginase family K01476,K01480,K12255,K18459 - 3.5.3.1,3.5.3.11,3.5.3.17,3.5.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 469.0
LYD3_k127_6303616_1 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 307.0
LYD3_k127_6303616_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000001751 248.0
LYD3_k127_6303616_3 COG0017 Aspartyl asparaginyl-tRNA synthetases K01893 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000002744 203.0
LYD3_k127_6303616_4 PFAM Thioredoxin domain K03672 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000005054 200.0
LYD3_k127_6304767_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1476.0
LYD3_k127_6305105_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.0 1263.0
LYD3_k127_6305105_1 YaeQ family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002957 234.0
LYD3_k127_6305105_2 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000008274 192.0
LYD3_k127_6313623_0 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008352 360.0
LYD3_k127_6313623_1 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001467 241.0
LYD3_k127_6313623_2 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000002093 197.0
LYD3_k127_6313623_3 2-Keto-4-pentenoate hydratase - - - 0.0000000000000006719 79.0
LYD3_k127_6340813_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 3.585e-302 950.0
LYD3_k127_6340813_1 phage integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006369 284.0
LYD3_k127_6340813_2 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000122 188.0
LYD3_k127_6340813_3 PFAM Integrase catalytic region - - - 0.00000000009453 63.0
LYD3_k127_6348461_0 cytochrome C oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 387.0
LYD3_k127_6348461_1 FixH K09926 - - 0.0000000000000000000000000000000000006007 149.0
LYD3_k127_6348461_2 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000000000000306 130.0
LYD3_k127_6348461_3 - - - - 0.0000000000000000000000000007615 117.0
LYD3_k127_6373390_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 368.0
LYD3_k127_6373390_1 RNA polymerase K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000569 259.0
LYD3_k127_6373390_2 Protein of unknown function (DUF3106) - - - 0.000000000000000000000000000003106 128.0
LYD3_k127_6373390_3 Protein of unknown function (DUF3619) - - - 0.00000000001711 73.0
LYD3_k127_6425558_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 5.145e-216 677.0
LYD3_k127_6425558_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 484.0
LYD3_k127_6425558_2 AMP-binding enzyme C-terminal domain K18661 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001389 283.0
LYD3_k127_6425558_3 TRAP-type C4-dicarboxylate transport system, small permease component - - - 0.0000000000000000000000000000000000000000000000001735 196.0
LYD3_k127_6445141_0 Na Pi-cotransporter II-related protein K03324 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 331.0
LYD3_k127_6445141_1 of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001089 230.0
LYD3_k127_6445141_2 Belongs to the GcvT family K00315,K19191 - 1.5.3.19,1.5.8.4 0.00000000000000000001118 92.0
LYD3_k127_6454446_0 dihydroorotase K01465 - 3.5.2.3 4.117e-198 625.0
LYD3_k127_6454446_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 519.0
LYD3_k127_6454446_2 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 411.0
LYD3_k127_6454446_3 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 365.0
LYD3_k127_6454446_4 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 298.0
LYD3_k127_6454446_5 Nitrile hydratase K01721,K20807 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006208 289.0
LYD3_k127_6454446_6 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000004647 221.0
LYD3_k127_6485733_0 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 604.0
LYD3_k127_6485733_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006354 378.0
LYD3_k127_6485733_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003527 282.0
LYD3_k127_6485733_3 Domain of unknown function (DUF4743) - - - 0.000000000000000000000000000000000000000000000000000000000000002199 242.0
LYD3_k127_6485733_4 Belongs to the 'phage' integrase family - - - 0.0000000000000001529 83.0
LYD3_k127_6488144_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002982 542.0
LYD3_k127_6488144_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 438.0
LYD3_k127_6488144_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005973 308.0
LYD3_k127_6488144_3 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0000000000000000000000000000000000000000000000005659 176.0
LYD3_k127_6528691_0 Uncharacterized protein family UPF0004 K06168 - 2.8.4.3 5.339e-204 651.0
LYD3_k127_6528691_1 TonB dependent receptor K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 430.0
LYD3_k127_6528691_2 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 344.0
LYD3_k127_6528691_3 Periplasmic binding protein K02016,K06858 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001214 287.0
LYD3_k127_6528691_4 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000003298 270.0
LYD3_k127_6528691_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003292 265.0
LYD3_k127_6528691_6 Cell division protein ZapA K09888 - - 0.0000000000000000000605 94.0
LYD3_k127_6528691_7 Domain of unknown function (DUF5117) - - - 0.00000000000349 71.0
LYD3_k127_6540472_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 455.0
LYD3_k127_6540472_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 373.0
LYD3_k127_6540472_2 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 390.0
LYD3_k127_6540472_3 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001715 261.0
LYD3_k127_6540472_4 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000002121 245.0
LYD3_k127_6544097_0 B12 binding domain K22491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006808 304.0
LYD3_k127_6544097_1 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000209 177.0
LYD3_k127_6544097_2 PGAP1-like protein - - - 0.0000000000000000000000000000000000000000052 168.0
LYD3_k127_6544097_3 Short chain dehydrogenase - - - 0.0000000000000000000003444 97.0
LYD3_k127_6544097_4 Cyclic nucleotide-monophosphate binding domain - - - 0.0007747 43.0
LYD3_k127_6575446_0 Molybdopterin oxidoreductase Fe4S4 domain K21307 - 1.8.5.6 0.0 1660.0
LYD3_k127_6575446_1 PUA-like domain K00958 - 2.7.7.4 1.384e-210 659.0
LYD3_k127_6575446_2 PFAM 4Fe-4S K00184,K21308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 464.0
LYD3_k127_6575446_3 DMSO reductase anchor subunit (DmsC) K21309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 426.0
LYD3_k127_6575446_4 Adenosine-5'-phosphosulfate reductase beta subunit K00395 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005358 286.0
LYD3_k127_6575446_5 Histidine kinase K07673 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000006986 267.0
LYD3_k127_6575446_6 FAD binding domain K00394 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000001591 237.0
LYD3_k127_6575446_7 response regulator K07684 - - 0.0000000000000000000000000000000000002376 152.0
LYD3_k127_6604623_0 DNA ligase K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 565.0
LYD3_k127_6604623_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 430.0
LYD3_k127_6604623_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004806 359.0
LYD3_k127_6609285_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 414.0
LYD3_k127_6609285_1 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008741 400.0
LYD3_k127_6609285_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000004093 72.0
LYD3_k127_6632631_0 Domain of unknown function (DUF5117) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002869 499.0
LYD3_k127_6632631_1 phosphate starvation-inducible protein PhoH K06217 - - 0.0000000000000000000000000000000000000000000000000000005333 196.0
LYD3_k127_66524_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 4.842e-219 686.0
LYD3_k127_66524_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000001314 116.0
LYD3_k127_67322_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007369 349.0
LYD3_k127_67322_1 Alkaline and neutral invertase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003095 250.0
LYD3_k127_674108_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 538.0
LYD3_k127_674108_1 Trap-type c4-dicarboxylate transport system, small permease component K11689,K21394 - - 0.00000000000000000000000000000000000000000000000001614 185.0
LYD3_k127_674108_2 FCD - - - 0.0000000000000000003013 91.0
LYD3_k127_674108_3 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00004144 52.0
LYD3_k127_674271_0 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 1.438e-240 752.0
LYD3_k127_674271_1 Methyl-accepting chemotaxis protein K02660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 297.0
LYD3_k127_674271_2 cheY-homologous receiver domain K02657 - - 0.000000000000000000000000000000000000000000000000000000000000001517 220.0
LYD3_k127_674271_3 response regulator receiver K02658 - - 0.000000000000000000000000000000000000000000000000001299 186.0
LYD3_k127_674271_4 Chemotaxis signal transduction protein K02659 - - 0.0000000000000000000000000000000000002872 146.0
LYD3_k127_686319_0 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.111e-207 653.0
LYD3_k127_686319_1 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000141 287.0
LYD3_k127_696692_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 8.616e-242 753.0
LYD3_k127_696692_1 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.00000000000000000000000000000000000000002286 163.0
LYD3_k127_696692_2 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K01420 - - 0.00000000000000000000000005616 124.0
LYD3_k127_696692_3 - - - - 0.000002457 59.0
LYD3_k127_69879_0 Electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 431.0
LYD3_k127_69879_1 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008385 375.0
LYD3_k127_69879_2 COG1960 Acyl-CoA dehydrogenases K20035 - - 0.000000000000000000000000000000002061 132.0
LYD3_k127_708482_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 1.629e-261 813.0
LYD3_k127_708482_1 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 509.0
LYD3_k127_708482_2 Protein of unknown function (DUF993) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 503.0
LYD3_k127_708482_3 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004572 420.0
LYD3_k127_708482_4 enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007476 305.0
LYD3_k127_708482_5 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000221 257.0
LYD3_k127_708482_6 Pkd domain containing protein - - - 0.000000000000002044 91.0
LYD3_k127_725584_0 Histidine kinase K02484,K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 393.0
LYD3_k127_725584_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 388.0
LYD3_k127_725584_2 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 369.0
LYD3_k127_725584_3 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007448 369.0
LYD3_k127_725584_4 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 323.0
LYD3_k127_725584_5 response regulator K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 301.0
LYD3_k127_725584_6 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000002177 232.0
LYD3_k127_725584_7 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000003474 219.0
LYD3_k127_725584_8 Histidine phosphatase superfamily (branch 1) - - - 0.000000000000000000000000000000000000000000001552 178.0
LYD3_k127_726027_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 584.0
LYD3_k127_726027_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 495.0
LYD3_k127_726027_10 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.0000000000000001416 85.0
LYD3_k127_726027_2 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 419.0
LYD3_k127_726027_3 Psort location Cytoplasmic, score 8.96 K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 303.0
LYD3_k127_726027_4 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000002303 189.0
LYD3_k127_726027_5 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000001145 173.0
LYD3_k127_726027_6 PFAM Phosphoribosyltransferase - - - 0.00000000000000000000000000000000000000000008311 171.0
LYD3_k127_726027_7 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.00000000000000000000000000000000005071 137.0
LYD3_k127_726027_8 Bacterial SH3 domain - - - 0.0000000000000000000000000000000005077 141.0
LYD3_k127_726027_9 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000329 130.0
LYD3_k127_727825_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 1.256e-229 730.0
LYD3_k127_727825_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000007573 206.0
LYD3_k127_735975_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0 1009.0
LYD3_k127_735975_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg - - - 0.0000000000000000000000000001238 123.0
LYD3_k127_739048_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 1.786e-242 767.0
LYD3_k127_739048_1 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 1.605e-241 767.0
LYD3_k127_739048_10 Branched-chain amino acid transport system / permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 355.0
LYD3_k127_739048_11 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 332.0
LYD3_k127_739048_12 Pfam:DUF1446 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 335.0
LYD3_k127_739048_13 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 295.0
LYD3_k127_739048_14 branched-chain amino acid K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002526 265.0
LYD3_k127_739048_15 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000008924 258.0
LYD3_k127_739048_16 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000678 254.0
LYD3_k127_739048_17 Ami_2 K03806 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000002974 247.0
LYD3_k127_739048_18 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000000000005542 223.0
LYD3_k127_739048_19 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000001098 211.0
LYD3_k127_739048_2 Methylmalonyl-CoA mutase K01848,K20906 - 5.4.99.2,5.4.99.64 2.947e-205 642.0
LYD3_k127_739048_20 gntR family K05799 - - 0.000000000000000000000000000000000000000000000000000000000293 217.0
LYD3_k127_739048_21 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000000000000000000000000004614 154.0
LYD3_k127_739048_22 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000004524 132.0
LYD3_k127_739048_23 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000000008121 133.0
LYD3_k127_739048_24 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000001041 96.0
LYD3_k127_739048_25 - - - - 0.0000000000002643 82.0
LYD3_k127_739048_3 acetyl-coa acetyltransferase K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 551.0
LYD3_k127_739048_4 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 542.0
LYD3_k127_739048_5 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008794 539.0
LYD3_k127_739048_6 PFAM Prokaryotic protein of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 501.0
LYD3_k127_739048_7 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006412 438.0
LYD3_k127_739048_8 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 355.0
LYD3_k127_739048_9 ArgK protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005968 359.0
LYD3_k127_752167_0 Protein of unknown function (DUF1298) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004835 396.0
LYD3_k127_752167_1 COG0332 3-oxoacyl- acyl-carrier-protein synthase III K16872 - 2.3.1.207 0.000000000000000000000000001305 117.0
LYD3_k127_767871_0 extracellular alpha-helical protein K06894 - - 0.0 1884.0
LYD3_k127_767871_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 534.0
LYD3_k127_767871_2 penicillin-binding protein K05367 - 2.4.1.129 0.0000000000000004396 93.0
LYD3_k127_768168_0 acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 573.0
LYD3_k127_768168_1 Methylmalonyl-CoA mutase K01847,K01848,K14447,K20906 - 5.4.99.2,5.4.99.63,5.4.99.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000332 426.0
LYD3_k127_768168_2 B12 binding domain K01849,K20907 - 5.4.99.2,5.4.99.64 0.000000000000000000000000000000000000000000000000000000001522 206.0
LYD3_k127_785201_0 regulation of DNA-templated transcription, elongation - - - 1.305e-277 874.0
LYD3_k127_785201_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 1.198e-204 642.0
LYD3_k127_785201_2 FAD-dependent pyridine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 510.0
LYD3_k127_785201_3 Mut7-C ubiquitin - - - 0.00000000000000000000004889 99.0
LYD3_k127_808819_0 Orn/Lys/Arg decarboxylase, N-terminal domain - - - 1.06e-227 708.0
LYD3_k127_808819_1 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008518 463.0
LYD3_k127_817633_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 530.0
LYD3_k127_817633_1 phosphoserine phosphatase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000002653 251.0
LYD3_k127_823309_0 Serine-pyruvate aminotransferase archaeal aspartate aminotransferase K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 4.611e-199 626.0
LYD3_k127_823309_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004567 289.0
LYD3_k127_823309_2 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000001535 166.0
LYD3_k127_823469_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 307.0
LYD3_k127_823469_1 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000000004177 236.0
LYD3_k127_823469_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000003964 220.0
LYD3_k127_823469_3 Belongs to the small heat shock protein (HSP20) family - - - 0.0000000000000000000000000000000000000004283 155.0
LYD3_k127_823469_4 Transport permease protein K01992 - - 0.00000000000000000000000000000008072 124.0
LYD3_k127_823724_0 Aminoacyl-tRNA editing domain K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005791 473.0
LYD3_k127_823724_1 cation transport ATPase K01533 - 3.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004323 456.0
LYD3_k127_823724_2 heavy metal translocating P-type ATPase K01533 - 3.6.3.4 0.000000000000000000000000000000000000000000000000000000000000001946 232.0
LYD3_k127_823724_3 universal stress protein - - - 0.00000000000000000000000000000000000000003547 156.0
LYD3_k127_82835_0 Anaerobic ribonucleoside-triphosphate reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000504 279.0
LYD3_k127_82835_1 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003416 253.0
LYD3_k127_82835_2 Anaerobic ribonucleoside-triphosphate reductase - - - 0.00000000000000000000003683 103.0
LYD3_k127_82835_3 Cytochrome oxidase assembly protein K02259 - - 0.000000003125 65.0
LYD3_k127_831222_0 Acyl-CoA dehydrogenase, C-terminal domain K09456 - - 9.148e-202 642.0
LYD3_k127_831222_1 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 429.0
LYD3_k127_831222_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000003059 180.0
LYD3_k127_831222_3 GAF domain - - - 0.000000000000000001491 97.0
LYD3_k127_832777_0 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 370.0
LYD3_k127_832777_1 NfeD-like C-terminal, partner-binding - - - 0.00000000000000000000000003535 113.0
LYD3_k127_832777_2 Putative regulatory protein - - - 0.0000000000000000000000002222 109.0
LYD3_k127_84158_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004854 271.0
LYD3_k127_84158_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000000002383 199.0
LYD3_k127_84158_2 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000000000000001254 120.0
LYD3_k127_846537_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 300.0
LYD3_k127_846537_1 Belongs to the frataxin K06202 - - 0.0000000000000000000007678 101.0
LYD3_k127_846537_2 Protein of unknown function DUF45 K07043 - - 0.000000000000000001682 86.0
LYD3_k127_852186_0 Thiolase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 608.0
LYD3_k127_852186_1 Domain of unknown function (DUF3482) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006502 611.0
LYD3_k127_852186_2 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 348.0
LYD3_k127_852186_3 Protein of unknown function (DUF2868) - - - 0.00000000000000000000000000000000002143 140.0
LYD3_k127_859610_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 471.0
LYD3_k127_859610_1 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003523 297.0
LYD3_k127_859610_2 FAD binding domain K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004255 314.0
LYD3_k127_859610_3 Pfam:DUF989 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005915 261.0
LYD3_k127_859610_4 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000001001 194.0
LYD3_k127_859610_5 Belongs to the anti-sigma-factor antagonist family - - - 0.00000000000000000000000000000000000001516 162.0
LYD3_k127_861635_0 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 322.0
LYD3_k127_861635_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002067 282.0
LYD3_k127_861635_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000000000000000000000000000000006501 203.0
LYD3_k127_861635_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000282 150.0
LYD3_k127_863367_0 III protein, CoA-transferase family - - - 5.631e-206 646.0
LYD3_k127_863367_1 Reductase C-terminal K05297 - 1.18.1.1 3.648e-203 647.0
LYD3_k127_863367_10 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000001836 255.0
LYD3_k127_863367_11 overlaps another CDS with the same product name - - - 0.000000000000000000000000000000000000000000000000000000000000000000002165 242.0
LYD3_k127_863367_12 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000004416 249.0
LYD3_k127_863367_13 ABC-type transport auxiliary lipoprotein component - - - 0.0000000000000000000000000000000000000000000000000000003344 200.0
LYD3_k127_863367_14 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000002909 99.0
LYD3_k127_863367_2 III protein, CoA-transferase family - - - 1.721e-200 631.0
LYD3_k127_863367_3 MlaD protein K06192 - - 1.528e-194 622.0
LYD3_k127_863367_4 Oxidoreductase family, NAD-binding Rossmann fold K19181 - 1.1.1.292 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 422.0
LYD3_k127_863367_5 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 393.0
LYD3_k127_863367_6 Enoyl-CoA hydratase/isomerase K08299 - 4.2.1.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 354.0
LYD3_k127_863367_7 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 350.0
LYD3_k127_863367_8 Enoyl-(Acyl carrier protein) reductase K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 323.0
LYD3_k127_863367_9 overlaps another CDS with the same product name - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001305 286.0
LYD3_k127_876117_0 Transposase IS66 family K07484 - - 0.0000000000000000000000000000000000000000002443 177.0
LYD3_k127_876117_1 High confidence in function and specificity K07484 - - 0.0000000000000000000001197 102.0
LYD3_k127_882723_0 phenylacetic acid K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008562 352.0
LYD3_k127_882723_1 Phenylacetate-CoA oxygenase K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000002911 201.0
LYD3_k127_882723_2 Iron-sulfur cluster assembly protein K02612 - - 0.00000000000000000000000000000000000000000000000000000002923 205.0
LYD3_k127_882723_3 Phenylacetic acid degradation B K02610 - - 0.00000000000000000000000000000000000000000000000009725 184.0
LYD3_k127_882723_4 Oxidoreductase FAD-binding domain K02613 - - 0.000000000533 64.0
LYD3_k127_884196_0 Belongs to the monovalent cation proton antiporter 2 (cpa2) transporter (TC 2.A.37) family K03455 - - 2.406e-221 706.0
LYD3_k127_884196_1 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 410.0
LYD3_k127_884196_2 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000845 166.0
LYD3_k127_884196_3 haloacid dehalogenase-like hydrolase K03270 - 3.1.3.45 0.000000000000000000000000000000000000000002287 173.0
LYD3_k127_897884_0 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 329.0
LYD3_k127_897884_1 50S ribosomal protein L4 K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 297.0
LYD3_k127_897884_2 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000007483 149.0
LYD3_k127_897884_3 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000002618 74.0
LYD3_k127_901864_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 9.523e-290 895.0
LYD3_k127_90823_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 6.348e-302 950.0
LYD3_k127_90823_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 3.578e-206 667.0
LYD3_k127_90823_10 Glycine cleavage system regulatory protein - - - 0.0000000000000000000000000000000000000000000003438 173.0
LYD3_k127_90823_11 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000008993 100.0
LYD3_k127_90823_2 TIGRFAM 40-residue YVTN family beta-propeller repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 579.0
LYD3_k127_90823_3 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007266 533.0
LYD3_k127_90823_4 twitching motility protein K02670 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 449.0
LYD3_k127_90823_5 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 396.0
LYD3_k127_90823_6 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 325.0
LYD3_k127_90823_7 Creatinine amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000839 322.0
LYD3_k127_90823_8 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000004122 261.0
LYD3_k127_90823_9 Metallopeptidase family M24 K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.0000000000000000000000000000000000000000000003329 167.0
LYD3_k127_934473_0 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 532.0
LYD3_k127_934473_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 516.0
LYD3_k127_934473_2 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 424.0
LYD3_k127_934473_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 370.0
LYD3_k127_934473_4 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009056 311.0
LYD3_k127_934473_5 With different specificities (related to short-chain alcohol - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000195 273.0
LYD3_k127_934473_6 MaoC like domain - - - 0.000000000000000000000000000000000000000000000000002344 190.0
LYD3_k127_934473_7 MaoC like domain K17865 - 4.2.1.55 0.00000000000000000000000000000000006815 138.0
LYD3_k127_934473_8 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000003649 86.0
LYD3_k127_934473_9 Tripartite ATP-independent periplasmic transporter, DctM component K21393 - - 0.000002359 57.0
LYD3_k127_942406_0 Histidine kinase A domain protein - - - 0.0 1031.0
LYD3_k127_942406_1 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001051 273.0
LYD3_k127_942406_2 - - - - 0.0000000000000001436 80.0
LYD3_k127_944204_0 FAD linked oxidase domain protein - - - 4.123e-304 943.0
LYD3_k127_94864_0 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000082 361.0
LYD3_k127_94864_1 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004593 321.0
LYD3_k127_94864_2 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000001249 216.0
LYD3_k127_952037_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003594 361.0
LYD3_k127_952037_1 phenylacetic acid degradation protein K02614 - - 0.00000000000000000000000000000000000000000000000000002126 196.0
LYD3_k127_952037_2 PFAM 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000001672 167.0
LYD3_k127_952860_0 Phosphoesterase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 526.0
LYD3_k127_952860_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 350.0
LYD3_k127_963900_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 2.351e-252 785.0
LYD3_k127_963900_1 Cytochrome c mono- and diheme variants - - - 0.000000000000000000000000000000000000000000000000000008184 196.0
LYD3_k127_96581_0 Belongs to the TPP enzyme family K03852 - 2.3.3.15 1.161e-272 850.0
LYD3_k127_96581_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.627e-265 832.0
LYD3_k127_96581_2 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 589.0
LYD3_k127_96581_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 386.0
LYD3_k127_96581_4 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 323.0
LYD3_k127_974528_0 Belongs to the argininosuccinate synthase family. Type 2 subfamily K01940 - 6.3.4.5 3.432e-240 747.0
LYD3_k127_974528_1 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003042 242.0
LYD3_k127_974528_2 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000002011 173.0
LYD3_k127_974528_3 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000003698 109.0
LYD3_k127_979029_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001648 275.0
LYD3_k127_979029_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000000000000000001669 250.0
LYD3_k127_979029_2 transcriptional regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000001468 207.0
LYD3_k127_979029_3 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000001879 167.0
LYD3_k127_981178_0 Type II and III secretion system protein K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 434.0
LYD3_k127_981178_1 Type II secretion system K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 357.0
LYD3_k127_981178_10 Pfam:T4SC - - - 0.0003891 51.0
LYD3_k127_981178_2 PFAM General secretion pathway protein K K02460 - - 0.00000000000000000000000000000000000000000000004471 187.0
LYD3_k127_981178_3 Type II secretion system (T2SS), protein G K02456 - - 0.0000000000000000000000000000000000000007671 154.0
LYD3_k127_981178_4 General secretion pathway protein H K02457 - - 0.0000000000000000000000000000002633 136.0
LYD3_k127_981178_5 fimbrial assembly K02461 - - 0.0000000000000000000000000000005594 140.0
LYD3_k127_981178_6 Prokaryotic N-terminal methylation motif - - - 0.000000000000000000000001023 117.0
LYD3_k127_981178_7 Type II secretion system (T2SS), protein M subtype b K02462 - - 0.0000000000000001734 90.0
LYD3_k127_981178_8 Prokaryotic N-terminal methylation motif - - - 0.00000000001307 72.0
LYD3_k127_981178_9 - - - - 0.000000297 58.0
LYD3_k127_987300_0 chemotaxis K02660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 395.0
LYD3_k127_987300_1 COG0643 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007309 345.0
LYD3_k127_990623_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 548.0
LYD3_k127_990623_1 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.00000000000000000000000000000009366 126.0