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Overview

ID MAG02054
Name LYD3_bin.8
Sample SMP0054
Taxonomy
Kingdom Bacteria
Phylum Myxococcota
Class Polyangia
Order Fen-1088
Family Fen-1088
Genus Fen-1118
Species
Assembly information
Completeness (%) 78.03
Contamination (%) 4.53
GC content (%) 68.0
N50 (bp) 6,418
Genome size (bp) 5,211,090

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3827

Gene name Description KEGG GOs EC E-value Score Sequence
LYD3_k127_1027094_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 373.0
LYD3_k127_1027094_1 domain, Protein K00712,K21471 - 2.4.1.52 0.0000000000000000000000000000000000000000000000000000000003276 226.0
LYD3_k127_1027094_2 Belongs to the serpin family K13963 - - 0.00000000000000006412 89.0
LYD3_k127_1027094_3 Forkhead associated domain - - - 0.000000002477 67.0
LYD3_k127_1027094_4 Alpha-L-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Able to hydrolyze 1,5-, 1,3- and 1,2-alpha-linkages not only in L- arabinofuranosyl oligosaccharides, but also in polysaccharides containing terminal non-reducing L-arabinofuranoses in side chains, like L-arabinan, arabinogalactan and arabinoxylan K20844 - 3.2.1.55 0.000000002506 70.0
LYD3_k127_1036072_0 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000000000000000000000000000000003219 228.0
LYD3_k127_1036072_1 Oxidoreductase family, C-terminal alpha/beta domain K00118,K13020 - 1.1.1.335,1.1.99.28 0.0000000000000000000007092 100.0
LYD3_k127_1036072_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000004604 102.0
LYD3_k127_1036072_3 DNA ligase K01971 - 6.5.1.1 0.000000000000001429 81.0
LYD3_k127_1036072_4 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 0.0001166 53.0
LYD3_k127_1037531_0 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 328.0
LYD3_k127_1037531_1 polysaccharide deacetylase - - - 0.000000000000000000000000000000000000107 158.0
LYD3_k127_1037531_2 superoxide dismutase activity - - - 0.000000000000000000000000004228 119.0
LYD3_k127_1037531_3 Parallel beta-helix repeats - - - 0.000000000000000000007356 107.0
LYD3_k127_1037531_4 Belongs to the pirin family K06911 - - 0.000003138 50.0
LYD3_k127_1037531_5 metallopeptidase activity - - - 0.0004736 50.0
LYD3_k127_1037531_6 CotH kinase protein - - - 0.0006139 49.0
LYD3_k127_1057596_0 Aminotransferase class-V K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 507.0
LYD3_k127_1057596_1 SUF system FeS assembly protein, NifU family K04488 - - 0.00000000000000000000000000000000000000000000006407 182.0
LYD3_k127_1057596_2 FeS assembly SUF system protein SufT - - - 0.00000000000000000000000000001309 124.0
LYD3_k127_106389_0 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K00833 GO:0003674,GO:0003824,GO:0004015,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 465.0
LYD3_k127_106389_1 Flagellar Motor Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004483 312.0
LYD3_k127_106389_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000000000000000000000000000000000000000000000000001004 217.0
LYD3_k127_106389_3 - - - - 0.0000000000382 71.0
LYD3_k127_1069095_0 - - - - 0.0000000000000000000000000000000000000000002983 173.0
LYD3_k127_1069095_1 Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair K03573 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.0000000000000000000000000000000000000000702 160.0
LYD3_k127_1070405_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 565.0
LYD3_k127_1070405_1 protein conserved in bacteria K11893 - - 0.000000000000000000000000001837 118.0
LYD3_k127_1070405_2 protein conserved in bacteria K11906 - - 0.000000000000000007825 92.0
LYD3_k127_1070405_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K07281,K07291 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0016780 2.7.7.74,2.7.8.34 0.0000000000001239 83.0
LYD3_k127_1072616_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006965 332.0
LYD3_k127_1072616_1 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000774 256.0
LYD3_k127_1072616_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.00000000000000000000000000000000002538 136.0
LYD3_k127_1072616_3 - - - - 0.0003042 51.0
LYD3_k127_107872_0 Superfamily II DNA RNA helicases, SNF2 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005717 434.0
LYD3_k127_107872_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000002211 270.0
LYD3_k127_107872_2 PIN domain - - - 0.00000000000000000000000000000000000000000402 162.0
LYD3_k127_107872_3 positive regulation of growth K01081 - 3.1.3.5 0.000000000000000004345 85.0
LYD3_k127_1085968_0 Rhs Family - - - 2.19e-261 856.0
LYD3_k127_1085968_1 domain protein K02674,K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 588.0
LYD3_k127_1089724_0 Elongation factor Tu domain 2 K02355 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005168 615.0
LYD3_k127_1089724_1 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002013 477.0
LYD3_k127_1089724_2 PFAM NAD dependent epimerase dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 465.0
LYD3_k127_1089724_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 428.0
LYD3_k127_1089724_4 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000000000000000000000000009603 209.0
LYD3_k127_1089724_5 transcriptional regulator - - - 0.00000000000000000000000000001601 123.0
LYD3_k127_1089724_6 Pfam:Kce K18013 - 2.3.1.247 0.00000000000000009465 81.0
LYD3_k127_1093583_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002569 446.0
LYD3_k127_1093583_1 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006459 338.0
LYD3_k127_1093583_2 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000007032 242.0
LYD3_k127_1093583_3 belongs to the thioredoxin family K00384,K03671 - 1.8.1.9 0.000000000000000000000000000000000000000007007 158.0
LYD3_k127_1099032_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 322.0
LYD3_k127_1099032_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007723 282.0
LYD3_k127_1099032_2 CBD_II K01728 - 4.2.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000001664 253.0
LYD3_k127_1099032_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000003447 139.0
LYD3_k127_1100739_0 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000000000005946 209.0
LYD3_k127_1100739_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000001498 105.0
LYD3_k127_1100739_2 HicB_like antitoxin of bacterial toxin-antitoxin system - - - 0.00000000000000001672 83.0
LYD3_k127_1100739_3 Toxic component of a toxin-antitoxin (TA) module. An RNase K18828 - - 0.00000000344 65.0
LYD3_k127_1104098_0 Carbohydrate esterase, sialic acid-specific acetylesterase K05970 - 3.1.1.53 6.194e-218 712.0
LYD3_k127_1104098_1 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 7.945e-213 673.0
LYD3_k127_1104098_2 hydrolase family 30 K15924 - 3.2.1.136 0.000000000000000009693 87.0
LYD3_k127_1105842_0 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 398.0
LYD3_k127_1105842_1 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 314.0
LYD3_k127_1105842_2 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004404 280.0
LYD3_k127_1105842_3 Protein of unknown function (DUF2723) - - - 0.00000000000000000000000000000000000000000000000000000000000002501 237.0
LYD3_k127_1105842_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000007806 152.0
LYD3_k127_1105842_5 - - - - 0.00000000000000000000000000000000000004204 159.0
LYD3_k127_1105842_6 Belongs to the Dps family K04047 - - 0.00000000000000000000000003108 119.0
LYD3_k127_1105842_7 ankyrin repeats K06867 - - 0.0000000000000000000000001386 114.0
LYD3_k127_1105842_8 Protein kinase domain - - - 0.00000000000000000000004475 100.0
LYD3_k127_1105842_9 Stringent starvation protein B K03600 - - 0.00000000000000000000006438 106.0
LYD3_k127_1118869_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 435.0
LYD3_k127_1118869_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009449 279.0
LYD3_k127_1118869_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003674 254.0
LYD3_k127_1118869_3 Preprotein translocase SecG subunit K03075 - - 0.00000000000000001605 94.0
LYD3_k127_1118869_4 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 0.0001199 44.0
LYD3_k127_1123673_0 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006242 325.0
LYD3_k127_1123673_1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000008624 215.0
LYD3_k127_1123673_2 Hydrolase Family 16 - - - 0.000000000000000000000000000000000000002224 170.0
LYD3_k127_1123673_3 metallopeptidase activity K01179,K07004,K12548 - 3.2.1.4 0.000000000000000000000000000000001374 151.0
LYD3_k127_1123673_4 Glycoside-hydrolase family GH114 - - - 0.00000000000000000000005244 116.0
LYD3_k127_1123673_5 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.000000007353 70.0
LYD3_k127_1132686_0 pyruvate phosphate dikinase K01006 - 2.7.9.1 0.0 1057.0
LYD3_k127_1132686_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000002934 170.0
LYD3_k127_1146914_0 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005175 458.0
LYD3_k127_1146914_1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657,K07664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 295.0
LYD3_k127_1146914_2 Belongs to the peptidase S8 family K14645 - - 0.000000000000000002321 99.0
LYD3_k127_1146914_3 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats - - - 0.0000001146 64.0
LYD3_k127_1147719_0 PFAM NHL repeat containing protein - - - 0.0 1094.0
LYD3_k127_1147719_1 ClpX C4-type zinc finger K03544 - - 0.00001926 51.0
LYD3_k127_116171_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 2.209e-243 769.0
LYD3_k127_116171_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 308.0
LYD3_k127_116171_2 - - - - 0.00000000000000000000000000000000000000000000000000008414 202.0
LYD3_k127_116171_3 Protein of unknown function DUF47 K07220 - - 0.000000000000000000000000000000000000000000000000002135 189.0
LYD3_k127_1167895_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009078 503.0
LYD3_k127_1167895_1 Domain of unknown function (DUF1957) K16149 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 441.0
LYD3_k127_117668_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 340.0
LYD3_k127_117742_0 Carbamoyltransferase C-terminus K00612 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 468.0
LYD3_k127_117742_1 Belongs to the glycosyl hydrolase family 6 K19668 - 3.2.1.91 0.0000000000000000000000000000000000000000000000000000000000000000000002737 265.0
LYD3_k127_117742_2 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000001281 213.0
LYD3_k127_117742_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.000000000000000000000000001781 126.0
LYD3_k127_117742_4 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000008536 115.0
LYD3_k127_1185324_0 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 318.0
LYD3_k127_1185324_1 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003489 273.0
LYD3_k127_1185324_2 Lipocalin-like domain K03098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003896 261.0
LYD3_k127_1191575_0 Protein of unknown function (DUF1211) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003506 302.0
LYD3_k127_1191575_1 - - - - 0.00000000000003018 82.0
LYD3_k127_1200152_0 Protein of unknown function (DUF1593) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 519.0
LYD3_k127_1200152_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006038 444.0
LYD3_k127_1200152_2 PAS fold - - - 0.0000000171 63.0
LYD3_k127_1200152_3 - - - - 0.0000008488 61.0
LYD3_k127_1200152_4 Arylsulfotransferase (ASST) - - - 0.0001902 54.0
LYD3_k127_1202520_0 Glycosyl hydrolases family 2 - - - 2.472e-238 764.0
LYD3_k127_1202520_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 368.0
LYD3_k127_1202520_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009865 279.0
LYD3_k127_1205703_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007364 502.0
LYD3_k127_1205703_1 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000004997 201.0
LYD3_k127_1205703_2 2 iron, 2 sulfur cluster binding - - - 0.000000000000000000000000005975 117.0
LYD3_k127_1205703_3 endoribonuclease L-PSP - - - 0.0000000000000000004877 100.0
LYD3_k127_1205703_4 Rhodanese Homology Domain - - - 0.000000000000002953 85.0
LYD3_k127_1217559_0 anti-sigma regulatory factor - - - 0.0000000000000000000000000000000001519 137.0
LYD3_k127_1217559_1 PFAM DRTGG domain - - - 0.00000000000000000000000003343 111.0
LYD3_k127_1217559_2 DRTGG domain - - - 0.000000000007223 70.0
LYD3_k127_1219250_0 FtsX-like permease family - - - 1.378e-196 634.0
LYD3_k127_1219250_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 453.0
LYD3_k127_1219250_2 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007877 351.0
LYD3_k127_1219250_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 359.0
LYD3_k127_1219250_4 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000006155 171.0
LYD3_k127_1219250_5 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000008699 139.0
LYD3_k127_1219250_6 - - - - 0.0000002499 53.0
LYD3_k127_1219288_0 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 400.0
LYD3_k127_1219288_1 Glycosyl transferase, family 2 - - - 0.00000000000000000000005831 109.0
LYD3_k127_1219288_2 Kelch repeat type 1 - - - 0.000000000001892 78.0
LYD3_k127_1232883_0 B-1 B cell differentiation K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000498 577.0
LYD3_k127_1232883_1 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 301.0
LYD3_k127_1232883_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003174 276.0
LYD3_k127_1232883_3 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000002276 261.0
LYD3_k127_1232883_4 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000000003408 213.0
LYD3_k127_1232883_5 - - - - 0.0000000000000000000000000000000000000000000000000002301 201.0
LYD3_k127_1232883_6 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000008763 192.0
LYD3_k127_1232883_8 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000028,GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:0140102,GO:1901360,GO:1901363 2.1.1.182 0.00000000000000000000000000000673 124.0
LYD3_k127_1237385_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0 1025.0
LYD3_k127_1237385_1 Possible lysine decarboxylase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 326.0
LYD3_k127_1237385_2 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000007821 237.0
LYD3_k127_1237385_3 cheY-homologous receiver domain - - - 0.0000000000000000000000000004183 128.0
LYD3_k127_1237385_4 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000005277 117.0
LYD3_k127_1242984_0 Protein of unknown function, DUF255 K06888 - - 8.297e-242 766.0
LYD3_k127_1242984_1 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000001934 147.0
LYD3_k127_1248894_0 PFAM ABC transporter related K15738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006463 551.0
LYD3_k127_1248894_1 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000007043 264.0
LYD3_k127_1248894_2 Copper/zinc superoxide dismutase (SODC) K04565 - 1.15.1.1 0.00000000000000000000000000000000000000001914 177.0
LYD3_k127_1248894_3 Stigma-specific protein, Stig1 - - - 0.000000000000000000000000000000000004058 156.0
LYD3_k127_1248894_4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - - - 0.00000000000000000000001712 112.0
LYD3_k127_1248894_5 Stigma-specific protein, Stig1 - - - 0.000000000000000000001608 110.0
LYD3_k127_1248894_6 Tetratricopeptide TPR_2 repeat protein - - - 0.00000002134 67.0
LYD3_k127_1248894_7 HAD-hyrolase-like - - - 0.000008291 56.0
LYD3_k127_1254158_0 Glycosyltransferase family 87 - - - 0.00000000000000000000000000000000004824 149.0
LYD3_k127_1254158_1 hydrolases of the HAD superfamily - - - 0.00000000002483 69.0
LYD3_k127_1266130_0 ATPase (AAA superfamily K07133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 399.0
LYD3_k127_1266130_1 Glycosyl hydrolases family 8 - - - 0.0000000000000000000000000000000000001841 162.0
LYD3_k127_1266130_2 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.0000000000000000000004512 109.0
LYD3_k127_1266130_3 - - - - 0.0000001739 64.0
LYD3_k127_1266130_5 Homologues of snake disintegrins - - - 0.000006179 55.0
LYD3_k127_1266130_6 Tumor necrosis factor receptor superfamily member K03158,K05160,K10130 GO:0002237,GO:0002376,GO:0003674,GO:0004888,GO:0005031,GO:0005035,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008219,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010941,GO:0012501,GO:0016020,GO:0016021,GO:0019221,GO:0023052,GO:0031224,GO:0031226,GO:0032496,GO:0032501,GO:0032502,GO:0033209,GO:0033993,GO:0034097,GO:0034612,GO:0038023,GO:0042127,GO:0042221,GO:0042981,GO:0043067,GO:0043207,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071356,GO:0071944,GO:0097190,GO:1901700 - 0.0001212 48.0
LYD3_k127_1267904_0 glycosyltransferase 36 associated K00702,K13688 - 2.4.1.20 0.0 2333.0
LYD3_k127_1267904_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 488.0
LYD3_k127_1267904_2 ABC transporter, ATP-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 425.0
LYD3_k127_1267904_4 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000005007 208.0
LYD3_k127_1267904_5 PD-(D/E)XK nuclease superfamily - - - 0.00008529 48.0
LYD3_k127_1276948_0 Protein kinase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 359.0
LYD3_k127_1276948_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000314 351.0
LYD3_k127_1276948_3 Peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.0000000000000000000000000000000000000000000001593 176.0
LYD3_k127_1276948_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000002021 107.0
LYD3_k127_1276948_7 Fe2 -dicitrate sensor, membrane component K07165 - - 0.000007469 58.0
LYD3_k127_1277911_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002273 313.0
LYD3_k127_1277911_1 cellulose binding - - - 0.0000000000000000000004946 113.0
LYD3_k127_1277911_2 regulator of chromosome condensation, RCC1 - - - 0.000000000199 75.0
LYD3_k127_1284048_0 PFAM isocitrate isopropylmalate dehydrogenase K00030,K07246 - 1.1.1.41,1.1.1.83,1.1.1.93,4.1.1.73 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006353 354.0
LYD3_k127_1284048_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 308.0
LYD3_k127_1284048_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.000000000000000000000000000000000000000000000000000000005127 213.0
LYD3_k127_1284048_3 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000002032 93.0
LYD3_k127_1284198_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000001335 214.0
LYD3_k127_1284198_1 Methylates ribosomal protein L11 K02687 - - 0.0000000000000000000000000000000000000000000000000000000003255 213.0
LYD3_k127_1284198_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000001015 162.0
LYD3_k127_1284198_3 Type II secretion system (T2SS), protein E, N-terminal domain - - - 0.00000000000000000000004938 111.0
LYD3_k127_1284198_4 - - - - 0.00000000000000000005648 90.0
LYD3_k127_1284198_5 structural constituent of ribosome K02970 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000255 90.0
LYD3_k127_1284198_6 RDD family - - - 0.0000000000000000006169 96.0
LYD3_k127_1285946_0 secondary active sulfate transmembrane transporter activity K06901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003517 579.0
LYD3_k127_1285946_1 - - - - 0.000000000000000000000000000000000000000000000000000000000001094 230.0
LYD3_k127_1285946_2 Alpha/beta hydrolase family K06999 - - 0.00000000000000000000000000000000000000007674 161.0
LYD3_k127_1285946_3 - - - - 0.00000000000000000000004554 113.0
LYD3_k127_1285946_4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000105 55.0
LYD3_k127_1302854_0 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 477.0
LYD3_k127_1303084_1 Sigma-70 region 2 K03088 - - 0.000000007269 64.0
LYD3_k127_1310429_0 Belongs to the pseudouridine synthase RsuA family K06178,K06183 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.19,5.4.99.22 0.000000000000000000000000000000000000000000000000000000005845 209.0
LYD3_k127_1310429_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000005613 194.0
LYD3_k127_1310429_2 Domain of unknown function (DUF4154) - - - 0.000000000000000000001933 104.0
LYD3_k127_1310429_3 Protein tyrosine kinase - - - 0.0000000000000000002328 100.0
LYD3_k127_1321434_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 347.0
LYD3_k127_1321434_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 299.0
LYD3_k127_1321434_2 PFAM peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.000000000000000000000000000000000000000000000000000000000000002567 228.0
LYD3_k127_1321434_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000009444 143.0
LYD3_k127_1321434_4 Protein of unknown function (DUF3467) - - - 0.000000000000000000001005 110.0
LYD3_k127_1321434_5 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.00000000000000002511 92.0
LYD3_k127_1340834_0 Glycoside-hydrolase family GH114 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005548 257.0
LYD3_k127_1340834_1 Parallel beta-helix repeats K01728 - 4.2.2.2 0.000000000000000000000000000000000000000000000000001498 204.0
LYD3_k127_1340834_2 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000000000000000000000000002841 192.0
LYD3_k127_1340834_3 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000005909 143.0
LYD3_k127_1340834_4 - - - - 0.000000000003694 73.0
LYD3_k127_1340834_5 Coagulation factor 5 8 type domain protein - - - 0.00000001992 63.0
LYD3_k127_1340834_6 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.00000004168 66.0
LYD3_k127_1345600_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 513.0
LYD3_k127_1345600_1 Esterase, phb depolymerase family K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 427.0
LYD3_k127_1345600_2 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.0000000000000000000000006841 110.0
LYD3_k127_1345600_3 - - - - 0.0000000000000000000265 95.0
LYD3_k127_1345600_4 PEGA domain - - - 0.0000000001926 69.0
LYD3_k127_1345600_5 protein kinase activity - - - 0.0009002 51.0
LYD3_k127_1345600_6 lipid catabolic process - - - 0.0009344 46.0
LYD3_k127_1353704_0 Belongs to the FtsK SpoIIIE SftA family K03466 - - 1.005e-210 688.0
LYD3_k127_1353704_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 343.0
LYD3_k127_1353704_2 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 299.0
LYD3_k127_1353704_3 Parallel beta-helix repeats - - - 0.000000000000000007045 100.0
LYD3_k127_1353704_4 General secretion pathway protein C K02452 - - 0.00000000001258 76.0
LYD3_k127_1357225_0 peptidase activity, acting on L-amino acid peptides - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 342.0
LYD3_k127_1357225_1 domain, Protein - - - 0.000000000193 70.0
LYD3_k127_1368391_0 depolymerase K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 349.0
LYD3_k127_1369491_0 Glycosyl hydrolase family 30 beta sandwich domain K15924 - 3.2.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003822 386.0
LYD3_k127_1369491_1 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 347.0
LYD3_k127_1369491_2 - - - - 0.00000000000000000000000000000000000000000000008792 180.0
LYD3_k127_1372068_0 TIGRFAM FeS assembly protein SufB K09014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 589.0
LYD3_k127_1372068_1 Stage II sporulation protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004568 410.0
LYD3_k127_1372068_2 involved in cell wall biogenesis K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 324.0
LYD3_k127_1372068_3 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000004728 192.0
LYD3_k127_1372068_4 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000001072 180.0
LYD3_k127_1372068_5 polysaccharide export K01991 - - 0.000000000000000000000000006095 128.0
LYD3_k127_1372068_6 PHB/PHA accumulation regulator DNA-binding domain - - - 0.000000000000000002685 87.0
LYD3_k127_1379967_0 Belongs to the glycosyl hydrolase family 6 - - - 7.097e-262 825.0
LYD3_k127_1379967_1 - - - - 0.000000000000000000000000000000000000000000000000000000007546 219.0
LYD3_k127_1379967_2 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000001402 200.0
LYD3_k127_1379967_3 long-chain fatty acid transporting porin activity K06076 - - 0.000000000000006751 88.0
LYD3_k127_1379967_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000008913 75.0
LYD3_k127_1379967_5 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.000000000848 72.0
LYD3_k127_1384102_1 Sel1 repeat protein K07126 - - 0.000000000000000000000000000000002036 145.0
LYD3_k127_1384102_2 Putative peptidoglycan binding domain - - - 0.00000000000000000002159 97.0
LYD3_k127_1384102_3 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00000000000000004834 87.0
LYD3_k127_1384102_4 - - - - 0.00000000000003762 77.0
LYD3_k127_1384102_5 Glycosyl hydrolases family 25 - - - 0.000000000195 74.0
LYD3_k127_1385004_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 550.0
LYD3_k127_1385004_1 Belongs to the SAICAR synthetase family K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009807 401.0
LYD3_k127_1385004_2 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000000000000000000004299 173.0
LYD3_k127_1385004_3 Aminotransferase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000002349 160.0
LYD3_k127_1418160_0 malic protein domain protein K00027,K00029 - 1.1.1.38,1.1.1.40 0.000000000000000000000000000000000000000000000000000000000001665 214.0
LYD3_k127_1418160_1 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.0000000000000000000000000000000000000000000000000002571 204.0
LYD3_k127_1418160_2 protein conserved in bacteria - - - 0.0006761 51.0
LYD3_k127_1428614_0 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000008746 225.0
LYD3_k127_1431248_0 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 391.0
LYD3_k127_1431248_1 Pas domain - - - 0.000000000000000000000000000000000000000000000000000002057 219.0
LYD3_k127_1431248_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000008048 67.0
LYD3_k127_1433703_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001432 264.0
LYD3_k127_1433703_1 protein conserved in bacteria - - - 0.00000001056 67.0
LYD3_k127_1441475_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006949 479.0
LYD3_k127_1441475_1 FliP family K03226 - - 0.00000000000000000000000000000000000000000000000000000000000000001356 230.0
LYD3_k127_1441475_2 Role in flagellar biosynthesis K02421 - - 0.000000000000000002755 94.0
LYD3_k127_1441475_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000000002646 78.0
LYD3_k127_1441475_4 Role in flagellar biosynthesis K02420 - - 0.000006405 56.0
LYD3_k127_1454713_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000004416 156.0
LYD3_k127_1454713_1 Tetratricopeptide repeat - - - 0.00000007662 66.0
LYD3_k127_1456869_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 2.477e-235 736.0
LYD3_k127_1456869_1 Transporter K03321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009056 433.0
LYD3_k127_1456869_2 Sulfotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000003764 246.0
LYD3_k127_1466634_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000006891 237.0
LYD3_k127_147249_0 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 452.0
LYD3_k127_147249_1 TPR repeat - - - 0.000002747 60.0
LYD3_k127_1472532_0 PA14 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 343.0
LYD3_k127_1472532_1 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.00000000000000001368 86.0
LYD3_k127_1472532_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000004393 57.0
LYD3_k127_1480688_0 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 359.0
LYD3_k127_1480688_1 Phosphate sensor histidine kinase, HAMP and PAS domain-containing K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002281 352.0
LYD3_k127_1480688_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000002687 218.0
LYD3_k127_1480688_3 phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000000005908 213.0
LYD3_k127_1480688_4 phosphate-selective porin O and P - - - 0.0000000000000000000000000000000000000000005406 174.0
LYD3_k127_1484597_0 FAD linked oxidase domain protein K00102 - 1.1.2.4 4.609e-210 667.0
LYD3_k127_1484597_1 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008349 440.0
LYD3_k127_1489077_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 494.0
LYD3_k127_1489077_1 Polysaccharide biosynthesis protein K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005836 424.0
LYD3_k127_1489077_10 Domain of unknown function (DUF4215) - - - 0.00000000000006932 77.0
LYD3_k127_1489077_2 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 301.0
LYD3_k127_1489077_3 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000166 279.0
LYD3_k127_1489077_4 PFAM Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001393 266.0
LYD3_k127_1489077_5 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000004516 208.0
LYD3_k127_1489077_6 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000000000002204 174.0
LYD3_k127_1489077_7 depolymerase - - - 0.0000000000000000000000000000001923 138.0
LYD3_k127_1489077_8 FHA domain - - - 0.0000000000000000000001169 112.0
LYD3_k127_1489077_9 PFAM Forkhead-associated protein - - - 0.0000000000000006538 91.0
LYD3_k127_1489789_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 6.56e-263 835.0
LYD3_k127_1489789_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001646 338.0
LYD3_k127_1489789_2 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006877 278.0
LYD3_k127_1489789_3 Forkhead associated domain K11894,K11913 - - 0.000000000000000003717 100.0
LYD3_k127_1494184_0 Belongs to the beta-ketoacyl-ACP synthases family K00647,K09458 - 2.3.1.179,2.3.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 391.0
LYD3_k127_1494184_1 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002249 291.0
LYD3_k127_1494184_2 PFAM Radical SAM domain protein - - - 0.0000000000000000000000000000002086 140.0
LYD3_k127_1496208_0 response regulator K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 555.0
LYD3_k127_1496208_1 Belongs to the glycosyl hydrolase family 6 K01181,K19551 - 3.2.1.8,4.2.2.10,4.2.2.2 0.0000000000000000000000000000000000000000000000000000000007957 218.0
LYD3_k127_149741_0 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003454 423.0
LYD3_k127_149741_1 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 336.0
LYD3_k127_149741_2 DisA bacterial checkpoint controller nucleotide-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002746 263.0
LYD3_k127_149741_3 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000005384 207.0
LYD3_k127_149741_4 YceI-like domain - - - 0.00000000000000002378 91.0
LYD3_k127_1501240_0 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01740 - 2.5.1.49 3.535e-219 686.0
LYD3_k127_1501240_1 Leucine-rich repeat (LRR) protein K13730 - - 0.0000000000000000000000000000000000000000000002833 186.0
LYD3_k127_1501240_2 Cro/C1-type HTH DNA-binding domain - - - 0.00000000000000000000000000000000000003284 157.0
LYD3_k127_1501240_3 DNA-templated transcription, initiation K03088 GO:0000988,GO:0000990,GO:0002791,GO:0003674,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0016987,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032879,GO:0032880,GO:0043254,GO:0044087,GO:0044419,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051171,GO:0051223,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0140110,GO:1903506,GO:1903530,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000004556 145.0
LYD3_k127_1501240_4 Right handed beta helix region - - - 0.00000000000000000000000009467 117.0
LYD3_k127_1501240_5 Tetratricopeptide repeat - - - 0.0000000000000000000005181 109.0
LYD3_k127_1506407_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1382.0
LYD3_k127_1506407_1 Angiotensin-converting enzyme K01283 - 3.4.15.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 586.0
LYD3_k127_1506407_2 KDPG and KHG aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000000000006339 254.0
LYD3_k127_1506407_3 PFAM Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000008674 238.0
LYD3_k127_1506407_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000008523 192.0
LYD3_k127_1506407_5 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.00000000000000000000000000000000000000000000000003331 185.0
LYD3_k127_1506407_6 lyase activity - - - 0.000000000000000000000000000000000000000004396 166.0
LYD3_k127_1506407_7 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000007761 123.0
LYD3_k127_1506407_8 - - - - 0.0000000000000000000000003835 122.0
LYD3_k127_1516252_0 Tetratricopeptide repeat - - - 0.0 1733.0
LYD3_k127_1516252_1 Protein of unknown function (DUF790) K09744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 331.0
LYD3_k127_1516252_2 Type III restriction enzyme, res subunit - - - 0.00000000000000000000000000000000000000000001588 166.0
LYD3_k127_1519608_0 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 584.0
LYD3_k127_1519608_1 Integrin alpha (beta-propellor repeats). - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 414.0
LYD3_k127_1519608_2 Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003215 306.0
LYD3_k127_1519608_3 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000000000000000000000000000000000000417 191.0
LYD3_k127_1519608_4 B12 binding domain - - - 0.000000000000001941 90.0
LYD3_k127_1522395_0 Cellulose Binding Domain Type IV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 552.0
LYD3_k127_1522395_1 Tetratricopeptide repeat - - - 0.00001598 56.0
LYD3_k127_152819_0 Succinyl-CoA ligase like flavodoxin domain K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 341.0
LYD3_k127_152819_1 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000003885 216.0
LYD3_k127_152819_2 Rhomboid family - - - 0.000000000000000000000000000000000003382 145.0
LYD3_k127_152819_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000172 111.0
LYD3_k127_152819_4 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000003048 88.0
LYD3_k127_1532434_0 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 436.0
LYD3_k127_1532434_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 341.0
LYD3_k127_1532434_2 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008887 304.0
LYD3_k127_1532434_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086,K03089 - - 0.000000000000000000000000000000000000000000000000000000002469 213.0
LYD3_k127_1532434_4 Biotin-protein ligase, N terminal - - - 0.0000000000000000000000000000000000001338 161.0
LYD3_k127_1532434_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000008262 141.0
LYD3_k127_1532434_6 xylan catabolic process K03932 - - 0.000000000000000000000000000003997 136.0
LYD3_k127_1532434_7 domain, Protein - - - 0.000000000000000000000004467 114.0
LYD3_k127_1532434_8 xylan catabolic process K03932 - - 0.0000000000000000000001595 109.0
LYD3_k127_1532434_9 - - - - 0.0000004978 62.0
LYD3_k127_1541089_0 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000002212 175.0
LYD3_k127_1541089_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel K20628 - - 0.000000000000000000000004839 115.0
LYD3_k127_1547286_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 4.696e-205 653.0
LYD3_k127_1547286_1 Belongs to the bacterial plant glucose-1-phosphate adenylyltransferase family K00975 - 2.7.7.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 539.0
LYD3_k127_1547286_2 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 458.0
LYD3_k127_1547286_3 NAD(P)H-binding K01784,K12448 - 5.1.3.2,5.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 439.0
LYD3_k127_1547286_4 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 350.0
LYD3_k127_1547286_5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 - 2.3.1.168 0.00000000002151 64.0
LYD3_k127_1550295_0 UPF0313 protein - - - 2.207e-296 924.0
LYD3_k127_1550295_1 PHB/PHA accumulation regulator DNA-binding domain - - - 0.0000000000000000004607 91.0
LYD3_k127_1550295_2 - - - - 0.00000000003031 76.0
LYD3_k127_1557061_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000001577 181.0
LYD3_k127_1557061_1 iron ion homeostasis - - - 0.00000000000000000000000000000000000000000003045 181.0
LYD3_k127_1557061_2 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000003519 125.0
LYD3_k127_1557061_3 Transcriptional regulator - - - 0.0000000000000000002374 94.0
LYD3_k127_1557061_4 Protein-disulfide isomerase - - - 0.000004529 52.0
LYD3_k127_1557061_5 Protein-disulfide isomerase - - - 0.00001698 53.0
LYD3_k127_1558707_0 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001006 255.0
LYD3_k127_1558707_1 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000005928 228.0
LYD3_k127_1558707_2 PIN domain - - - 0.00000000000000000000001202 102.0
LYD3_k127_156974_0 ABC transporter K06147 - - 5.913e-233 750.0
LYD3_k127_156974_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008129 539.0
LYD3_k127_156974_2 aminotransferase K14260 - 2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 460.0
LYD3_k127_156974_4 TrkA-C domain K03455 - - 0.000000000000000002258 90.0
LYD3_k127_156974_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000000001054 95.0
LYD3_k127_156974_6 Domains in Na-Ca exchangers and integrin-beta4 K01406 - 3.4.24.40 0.0003366 51.0
LYD3_k127_1571703_0 Acid phosphatase homologues - - - 0.00000000000000000000000000000000000000000000001826 179.0
LYD3_k127_1576881_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008592 417.0
LYD3_k127_1576881_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 304.0
LYD3_k127_1576881_2 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000001899 270.0
LYD3_k127_1576881_3 Serine Threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000004859 249.0
LYD3_k127_1576881_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000002986 194.0
LYD3_k127_1576881_5 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000006005 153.0
LYD3_k127_1576881_6 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000001546 138.0
LYD3_k127_1576881_7 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000001493 108.0
LYD3_k127_1576881_9 RimK-like ATP-grasp domain K03802 - 6.3.2.29,6.3.2.30 0.000001145 51.0
LYD3_k127_1589868_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 621.0
LYD3_k127_1589868_1 pyruvate phosphate dikinase K01006 - 2.7.9.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 411.0
LYD3_k127_1589868_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000003478 150.0
LYD3_k127_1589868_3 Tetratricopeptide repeat - - - 0.000000000000000633 81.0
LYD3_k127_1589868_4 Helix-turn-helix domain - - - 0.000000000003381 73.0
LYD3_k127_1591457_0 Type III restriction enzyme, res subunit K01156 - 3.1.21.5 7.243e-303 935.0
LYD3_k127_1591457_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004472 294.0
LYD3_k127_1591457_2 Alpha galactosidase A K07407 - 3.2.1.22 0.00000000000000000000818 94.0
LYD3_k127_1592278_0 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000454 278.0
LYD3_k127_1601744_0 Family membership K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000111 265.0
LYD3_k127_1601744_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000007448 264.0
LYD3_k127_1601744_2 UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000005786 105.0
LYD3_k127_1601744_3 RNA binding S1 domain protein K06959 - - 0.0000000000000000001545 90.0
LYD3_k127_1601744_4 pyridine nucleotide-disulfide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 0.0005102 43.0
LYD3_k127_1606021_0 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta) - - - 4.544e-213 686.0
LYD3_k127_1606021_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 495.0
LYD3_k127_1606021_2 Putative zinc-finger K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003282 287.0
LYD3_k127_1606021_3 - - - - 0.0000000000000000000000000000000000000000001006 167.0
LYD3_k127_1606021_4 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.00000000001272 72.0
LYD3_k127_1606641_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 572.0
LYD3_k127_1606641_1 General secretion pathway protein F K02455,K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 414.0
LYD3_k127_1606641_10 Prokaryotic N-terminal methylation motif K02458 - - 0.000000000002337 79.0
LYD3_k127_1606641_2 Type II and III secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001215 275.0
LYD3_k127_1606641_3 Type IV pilus assembly protein PilM; K02461 - - 0.00000000000000000000000000000000000000000000000000000000002416 228.0
LYD3_k127_1606641_4 Type II secretion system (T2SS), protein K K02460 - - 0.000000000000000000000000000000000000000000000000000001409 209.0
LYD3_k127_1606641_5 Type II secretion system (T2SS), protein J K02459 - - 0.0000000000000000000000000000003269 138.0
LYD3_k127_1606641_6 - - - - 0.000000000000000000000001426 116.0
LYD3_k127_1606641_7 General secretion pathway protein G K02456 - - 0.00000000000000003243 87.0
LYD3_k127_1606641_9 Prokaryotic N-terminal methylation motif K02457 - - 0.0000000000006335 81.0
LYD3_k127_1617701_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005773 523.0
LYD3_k127_1617701_1 repeat protein - - - 0.0000000000000000000000000000000000000000005084 172.0
LYD3_k127_1617701_2 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.00000000000000000000000000000000000002687 153.0
LYD3_k127_1617701_3 Heat shock 70 kDa protein K04043 - - 0.00000000000003361 81.0
LYD3_k127_1620454_0 Serine Threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 319.0
LYD3_k127_1620454_1 Alg9-like mannosyltransferase family K05286 - - 0.000000000000000000000000000000000000002456 167.0
LYD3_k127_1620454_2 PEGA domain - - - 0.00000000000000000007419 104.0
LYD3_k127_1620454_3 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.00000001864 59.0
LYD3_k127_1620454_4 Alpha-1,2-mannosidase - - - 0.00007818 50.0
LYD3_k127_162163_0 Male sterility protein K01897 - 6.2.1.3 0.0 1273.0
LYD3_k127_162163_1 Belongs to the glycosyl hydrolase family 6 - - - 4.995e-233 747.0
LYD3_k127_162163_2 Domain of unknown function (DUF2088) - - - 4.972e-225 708.0
LYD3_k127_162163_3 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001273 254.0
LYD3_k127_162163_4 epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000004945 190.0
LYD3_k127_162163_5 Belongs to the glycosyl hydrolase family 6 K01083,K01190 - 3.1.3.8,3.2.1.23 0.00000000000000000000000000000000000001764 160.0
LYD3_k127_162163_6 - - - - 0.0000007004 55.0
LYD3_k127_162163_7 Protein kinase domain K12132 - 2.7.11.1 0.0002665 53.0
LYD3_k127_1631084_0 - - - - 5.112e-314 996.0
LYD3_k127_1631084_1 O-Glycosyl hydrolase family 30 K18579 - 3.2.1.164 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 592.0
LYD3_k127_1631084_2 PFAM glycoside hydrolase clan GH-D K07407 - 3.2.1.22 0.000000000000000000000000000000000000876 142.0
LYD3_k127_1647092_0 Cation transporter/ATPase, N-terminus K01531 - 3.6.3.2 0.000000000000000000000000000000000000000000000000000000000001759 212.0
LYD3_k127_1647092_1 Inhibitor of apoptosis-promoting Bax1 K06890,K19416 - - 0.0000000000000000000000000000000000000000000000000000000003246 218.0
LYD3_k127_1647092_2 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000006648 127.0
LYD3_k127_1647092_3 - - - - 0.0000000000000000000000000002496 123.0
LYD3_k127_1647092_4 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000003357 87.0
LYD3_k127_1647092_5 PFAM GCN5-related N-acetyltransferase - - - 0.000000000004691 75.0
LYD3_k127_1647092_6 Putative metal-binding motif - - - 0.0001156 54.0
LYD3_k127_1649877_0 PFAM transposase IS116 IS110 IS902 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 305.0
LYD3_k127_1665230_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000001354 143.0
LYD3_k127_1676215_0 Esterase PHB depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 452.0
LYD3_k127_1676215_1 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.000000000000000000000000000000000000000000000000006132 198.0
LYD3_k127_1676215_2 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000000000000000000000002409 120.0
LYD3_k127_1676215_3 GHH signature containing HNH/Endo VII superfamily nuclease toxin 2 - - - 0.00000000000000000000000003822 113.0
LYD3_k127_1676215_4 synthase K00647 - 2.3.1.41 0.00000000000000001281 98.0
LYD3_k127_1676215_5 - - - - 0.00000002362 63.0
LYD3_k127_1680800_0 Sigma-70, region 4 - - - 7.926e-205 651.0
LYD3_k127_1680800_1 Transposase - - - 0.00000000000000000000000000000000000008859 150.0
LYD3_k127_1680800_2 ATP-binding protein - - - 0.000000000000000009234 88.0
LYD3_k127_1692188_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1038.0
LYD3_k127_1692188_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0030312,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 4.474e-261 822.0
LYD3_k127_1692188_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000002212 246.0
LYD3_k127_1692188_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000001357 221.0
LYD3_k127_1692188_4 GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000149 79.0
LYD3_k127_1692198_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000262 276.0
LYD3_k127_1692198_1 F COG0518 GMP synthase - Glutamine amidotransferase domain - - - 0.00000000000000000000000000000000000000000000000000001036 202.0
LYD3_k127_1692198_2 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000002673 192.0
LYD3_k127_1692198_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000003991 185.0
LYD3_k127_1692198_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000003718 189.0
LYD3_k127_1692198_5 Caspase domain - - - 0.000000000000000000000000000000000000000001084 168.0
LYD3_k127_1692198_6 AntiSigma factor - - - 0.00000000000000000000000000000000000000001847 168.0
LYD3_k127_1692198_7 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000003041 137.0
LYD3_k127_1692198_8 polysaccharide biosynthetic process - - - 0.0000000000000001259 94.0
LYD3_k127_1692198_9 GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000001336 79.0
LYD3_k127_1693721_0 amino acid transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 542.0
LYD3_k127_1693721_1 EAL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002716 288.0
LYD3_k127_1693721_2 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004216 274.0
LYD3_k127_1693721_3 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000006649 250.0
LYD3_k127_169645_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 0.00000000000000000000000000000000000000000000000000000000006131 209.0
LYD3_k127_169645_1 HEAT repeats - - - 0.000000000000000000000000000000000000000000000002433 198.0
LYD3_k127_169645_2 Tetratricopeptide repeat - - - 0.000007631 57.0
LYD3_k127_1709949_0 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 436.0
LYD3_k127_1709949_1 Pyridine nucleotide-disulphide oxidoreductase K00362 - 1.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 327.0
LYD3_k127_1733393_0 secondary active sulfate transmembrane transporter activity K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000001514 251.0
LYD3_k127_1734926_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 GO:0000049,GO:0000166,GO:0000287,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009069,GO:0009070,GO:0009987,GO:0010467,GO:0016020,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046983,GO:0070905,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 554.0
LYD3_k127_1734926_1 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 365.0
LYD3_k127_1734926_2 Belongs to the bacterial histone-like protein family K05788 - - 0.000000000000000000000000000087 135.0
LYD3_k127_1734926_4 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007,K21787 - 2.7.9.2 0.00000001459 61.0
LYD3_k127_1747604_0 Histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 403.0
LYD3_k127_1747604_1 Cytochrome c - - - 0.00000000000000000000000001468 109.0
LYD3_k127_1757331_0 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000000000000000000000000001882 216.0
LYD3_k127_1757331_1 Signal transduction histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000004564 136.0
LYD3_k127_1757331_2 Binds the 23S rRNA K02909 - - 0.000000000000000000000004101 106.0
LYD3_k127_1757331_3 membrane - - - 0.0000000000000000000002728 113.0
LYD3_k127_1757331_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000001346 75.0
LYD3_k127_1762112_0 Domain of unknown function (DUF1846) - - - 2.486e-237 745.0
LYD3_k127_1762112_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008643 366.0
LYD3_k127_1762112_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006806 271.0
LYD3_k127_1762112_3 extracellular matrix structural constituent - - - 0.000000000000000000000000000000000000004983 168.0
LYD3_k127_1762112_4 M6 family metalloprotease domain protein - - - 0.0000000000000000000001524 111.0
LYD3_k127_1762112_5 PFAM 3-carboxy-cis,cis-muconate lactonizing enzyme K07404 - 3.1.1.31 0.0000000000001139 76.0
LYD3_k127_1763669_0 Domain of unknown function (DUF3520) K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 365.0
LYD3_k127_1763669_2 integral membrane protein - - - 0.00000000003893 72.0
LYD3_k127_1775474_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 563.0
LYD3_k127_1775474_1 TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000001418 87.0
LYD3_k127_177813_0 TIGRFAM hydrogenase (NiFe) small subunit (hydA) K18008 - 1.12.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003276 301.0
LYD3_k127_177813_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00437,K06281 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.12.2.1,1.12.99.6 0.0000000000000000000000000000000000000000000000000007179 192.0
LYD3_k127_1780717_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002744 338.0
LYD3_k127_1780717_1 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000007709 136.0
LYD3_k127_1780717_2 peptidyl-tyrosine sulfation - - - 0.0007534 50.0
LYD3_k127_1787225_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 566.0
LYD3_k127_1787225_1 Histidine kinase K02668,K07708 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001451 312.0
LYD3_k127_1787225_2 efflux transmembrane transporter activity K15725 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002188 274.0
LYD3_k127_1787225_3 PFAM sigma-54 factor interaction domain-containing protein K02481 - - 0.00000000000000000000000000000000000000000000000000000000001664 222.0
LYD3_k127_1787225_4 Sigma-70, region 4 K03088 - - 0.00000000000000000000000003768 118.0
LYD3_k127_1787225_5 S-layer homology domain - - - 0.0000000000000002828 92.0
LYD3_k127_1787225_6 PAS fold - - - 0.000000008116 62.0
LYD3_k127_1788183_0 OPT oligopeptide transporter protein - - - 1.541e-210 670.0
LYD3_k127_1788183_1 alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 334.0
LYD3_k127_1793668_0 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000001373 230.0
LYD3_k127_1793668_1 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
LYD3_k127_1793668_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000001748 196.0
LYD3_k127_1793668_3 - - - - 0.000000000000002204 86.0
LYD3_k127_1793668_4 Anti-sigma-K factor rskA - - - 0.0002978 52.0
LYD3_k127_1806774_0 reductase alpha subunit K00394 - 1.8.99.2 1.659e-295 925.0
LYD3_k127_1806774_1 Heterodisulfide reductase subunit A and related polyferredoxins K16886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004254 511.0
LYD3_k127_1806774_2 binding domain K16885 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 418.0
LYD3_k127_1806774_3 reductase beta subunit K00395 - 1.8.99.2 0.00000000000000000000000000000000000000000000000000004041 190.0
LYD3_k127_1807254_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000002828 193.0
LYD3_k127_1807254_1 Belongs to the glycosyl hydrolase 12 (cellulase H) family K01179 - 3.2.1.4 0.0000000000000000000000000000003511 140.0
LYD3_k127_1807254_2 Glycosyl transferase K00728 - 2.4.1.109 0.00000000000000000000149 110.0
LYD3_k127_1807254_4 biological adhesion K04005,K04011,K04012,K17495 GO:0001701,GO:0001775,GO:0001846,GO:0001847,GO:0001848,GO:0001851,GO:0001855,GO:0001861,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002429,GO:0002430,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002673,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002712,GO:0002713,GO:0002757,GO:0002764,GO:0002768,GO:0002819,GO:0002820,GO:0002822,GO:0002823,GO:0002889,GO:0002890,GO:0002920,GO:0002921,GO:0002923,GO:0002924,GO:0003674,GO:0003676,GO:0003677,GO:0004875,GO:0004877,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008283,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009897,GO:0009986,GO:0009987,GO:0010466,GO:0010468,GO:0010604,GO:0010605,GO:0010629,GO:0010950,GO:0010951,GO:0010952,GO:0010955,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0019222,GO:0023052,GO:0030097,GO:0030098,GO:0030141,GO:0030154,GO:0030162,GO:0030183,GO:0030449,GO:0030450,GO:0030451,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031347,GO:0031348,GO:0031410,GO:0031982,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032991,GO:0036230,GO:0038023,GO:0042100,GO:0042113,GO:0042119,GO:0042802,GO:0042803,GO:0043009,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043235,GO:0043299,GO:0043312,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045055,GO:0045088,GO:0045321,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045824,GO:0045861,GO:0045862,GO:0045916,GO:0045957,GO:0045959,GO:0046649,GO:0046651,GO:0046903,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050727,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051336,GO:0051345,GO:0051346,GO:0051716,GO:0052547,GO:0052548,GO:0060089,GO:0060255,GO:0065007,GO:0065009,GO:0070613,GO:0070661,GO:0070820,GO:0071944,GO:0080090,GO:0080134,GO:0097159,GO:0097708,GO:0098552,GO:0098588,GO:0098805,GO:0099503,GO:0101002,GO:0101003,GO:1900003,GO:1900004,GO:1900005,GO:1901363,GO:1902105,GO:1902571,GO:1902572,GO:1902573,GO:1903317,GO:1903318,GO:1903706,GO:2000026,GO:2000257,GO:2000258 - 0.000009701 59.0
LYD3_k127_1809236_0 Mur ligase family, catalytic domain K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 541.0
LYD3_k127_1809236_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0030312,GO:0034641,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006613 472.0
LYD3_k127_1809236_2 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.000000000000000000000000000000000000000000000000000000000000000001883 239.0
LYD3_k127_1809236_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000002432 189.0
LYD3_k127_1809236_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000001079 192.0
LYD3_k127_1809236_5 Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000000000000000000000005529 132.0
LYD3_k127_1820655_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 1.379e-251 790.0
LYD3_k127_1820655_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007967 578.0
LYD3_k127_1820655_2 Putative glycosyl hydrolase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 400.0
LYD3_k127_1820655_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000001018 264.0
LYD3_k127_1820655_4 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000008786 151.0
LYD3_k127_1820655_5 Lysylphosphatidylglycerol synthase TM region - - - 0.0000000000000000000000001577 121.0
LYD3_k127_1820655_7 TPR repeat - - - 0.0004779 51.0
LYD3_k127_1822876_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000003032 229.0
LYD3_k127_1822876_2 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000002305 218.0
LYD3_k127_1822876_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000001838 88.0
LYD3_k127_1822876_4 Lysylphosphatidylglycerol synthase TM region - - - 0.0000501 55.0
LYD3_k127_1824383_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008236 516.0
LYD3_k127_1824383_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000002059 201.0
LYD3_k127_1837494_0 Adventurous gliding motility - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006418 248.0
LYD3_k127_1837494_1 MotA/TolQ/ExbB proton channel family - - - 0.000000000000000000000000000000000000000000000000000000000000007029 222.0
LYD3_k127_1837494_2 deoxyhypusine monooxygenase activity - - - 0.000000000000000000000000000005989 139.0
LYD3_k127_1837494_3 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000437 123.0
LYD3_k127_1837494_4 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000002193 103.0
LYD3_k127_1839756_0 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000143 99.0
LYD3_k127_1839756_2 lipolytic protein G-D-S-L family - - - 0.0001391 53.0
LYD3_k127_1840797_0 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 647.0
LYD3_k127_1842589_0 Belongs to the P-Pant transferase superfamily K02362,K06133 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008897,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009366,GO:0009712,GO:0009713,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0031224,GO:0031226,GO:0032991,GO:0034641,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 6.3.2.14 0.0000000000000000000000000000000000000000001052 173.0
LYD3_k127_1842589_1 Protein kinase domain - - - 0.0000000000000000000000000002108 127.0
LYD3_k127_1842589_2 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000008334 116.0
LYD3_k127_1851651_0 Protein conserved in bacteria - - - 0.0000000000000000000000008828 116.0
LYD3_k127_1851651_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000005827 70.0
LYD3_k127_1852450_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 377.0
LYD3_k127_1852450_1 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.0000000000000000000000000000000000001175 156.0
LYD3_k127_1852450_2 - - - - 0.0000000000000000000837 93.0
LYD3_k127_1855424_0 PFAM CheB methylesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 318.0
LYD3_k127_1855424_1 phosphoenolpyruvate carboxylase activity K01595 - 4.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001384 290.0
LYD3_k127_1855424_2 Citrate transporter K03893 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005812 274.0
LYD3_k127_1855424_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000001237 206.0
LYD3_k127_1858962_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000554 146.0
LYD3_k127_187408_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 509.0
LYD3_k127_187408_1 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 368.0
LYD3_k127_187408_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000001649 235.0
LYD3_k127_187408_3 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000001819 166.0
LYD3_k127_187408_4 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000003568 140.0
LYD3_k127_1875414_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 516.0
LYD3_k127_1875414_1 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002205 262.0
LYD3_k127_1875414_2 amine dehydrogenase activity - - - 0.00000001584 68.0
LYD3_k127_1885055_0 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 378.0
LYD3_k127_1885055_1 Integrase catalytic - - - 0.00000000000000000000000000000000000000000000000000000000003595 231.0
LYD3_k127_1885055_2 PFAM IstB domain protein ATP-binding protein - - - 0.0000000000000000000000000000005803 132.0
LYD3_k127_1891134_0 IstB domain protein ATP-binding protein - - - 0.00000000000000000000000000000000000004967 155.0
LYD3_k127_1891134_1 PFAM Integrase catalytic region - - - 0.00000000000000000000000000000000007692 153.0
LYD3_k127_1891134_2 Protein of unknown function (DUF2586) - - - 0.0008496 48.0
LYD3_k127_1891134_3 Belongs to the ParB family K03497 - - 0.0009997 50.0
LYD3_k127_1893711_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 615.0
LYD3_k127_1903793_0 PFAM regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 523.0
LYD3_k127_1903793_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000001965 194.0
LYD3_k127_1904161_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 2.335e-213 668.0
LYD3_k127_1904161_1 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006006 516.0
LYD3_k127_1904161_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 329.0
LYD3_k127_1907166_0 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 429.0
LYD3_k127_1907166_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 320.0
LYD3_k127_1907166_2 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000003238 221.0
LYD3_k127_1907166_3 domain, Protein K02674 - - 0.0000000000000000000000000000000000000127 162.0
LYD3_k127_1907166_4 - - - - 0.0000000000000000000000000000003187 135.0
LYD3_k127_1907166_5 Response regulator, receiver - - - 0.00000000000000000000004248 117.0
LYD3_k127_1907166_6 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.000000000000000000001336 100.0
LYD3_k127_1915250_0 phosphoglycerate mutase activity K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000028 239.0
LYD3_k127_1915250_1 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000002734 199.0
LYD3_k127_1915250_2 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000006942 138.0
LYD3_k127_1915250_3 Domain of unknown function (DUF4178) - - - 0.00000004046 63.0
LYD3_k127_1920758_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 440.0
LYD3_k127_1932862_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000004946 253.0
LYD3_k127_1932862_1 Glycosyl hydrolase family 3 N terminal domain K01207 - 3.2.1.52 0.00000000000000000000007265 103.0
LYD3_k127_1932862_2 Tetratricopeptide repeat - - - 0.000000000000000496 83.0
LYD3_k127_1942906_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000003856 103.0
LYD3_k127_1942906_1 Domain of unknown function (DUF4880) K07165 - - 0.00000004535 65.0
LYD3_k127_1942983_0 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000001132 243.0
LYD3_k127_1942983_1 PilZ domain K02676 - - 0.0000000000000000000000000000000000003153 145.0
LYD3_k127_1942983_2 Tetratricopeptide repeat - - - 0.000000000005515 75.0
LYD3_k127_1951744_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 604.0
LYD3_k127_1966721_0 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 370.0
LYD3_k127_1968609_0 Domain of unknown function (DUF362) - - - 1.545e-241 753.0
LYD3_k127_1968609_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009795 409.0
LYD3_k127_1968609_2 Zinc-binding dehydrogenase K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 297.0
LYD3_k127_1968609_3 ATPase (AAA superfamily K07133 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 312.0
LYD3_k127_1968609_4 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000002095 246.0
LYD3_k127_1970019_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 1.592e-257 812.0
LYD3_k127_1970019_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 440.0
LYD3_k127_1970019_2 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 431.0
LYD3_k127_197559_0 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 316.0
LYD3_k127_198026_0 NAD(P)H dehydrogenase (quinone) K00355 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000128 285.0
LYD3_k127_198026_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001663 253.0
LYD3_k127_198026_2 - - - - 0.000000000000000000000000000000000000000000000000000963 205.0
LYD3_k127_198026_3 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000001178 158.0
LYD3_k127_198026_4 NAD(P)H dehydrogenase (quinone) K00355 - 1.6.5.2 0.000000000000000000000000000000001118 135.0
LYD3_k127_1988270_0 radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 472.0
LYD3_k127_1988270_1 Cytochrome c - - - 0.000000000000001158 88.0
LYD3_k127_1988270_2 Belongs to the MEMO1 family K06990 - - 0.00000000000006245 77.0
LYD3_k127_1988270_3 von Willebrand factor (vWF) type A domain - - - 0.0000000000002998 82.0
LYD3_k127_2001507_0 protein conserved in bacteria K09955 - - 0.000000000000000000000000000005668 134.0
LYD3_k127_2001507_1 - - - - 0.000000000000000000000001432 111.0
LYD3_k127_2004033_0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 407.0
LYD3_k127_2004033_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000001058 256.0
LYD3_k127_2006981_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 466.0
LYD3_k127_2006981_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 329.0
LYD3_k127_2006981_2 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000005283 190.0
LYD3_k127_2006981_3 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000003943 167.0
LYD3_k127_2006981_4 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000003912 145.0
LYD3_k127_2006981_5 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000001408 74.0
LYD3_k127_2006981_7 Plays a role in the flagellum-specific transport system K02419 - - 0.00000819 53.0
LYD3_k127_2007424_0 - K22017 GO:0001894,GO:0002218,GO:0002220,GO:0002223,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003008,GO:0003674,GO:0005102,GO:0005176,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0005887,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007586,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010669,GO:0012505,GO:0016020,GO:0016021,GO:0016266,GO:0019538,GO:0022600,GO:0023052,GO:0030197,GO:0030277,GO:0031012,GO:0031224,GO:0031226,GO:0031347,GO:0031349,GO:0031974,GO:0032501,GO:0034645,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0048871,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0071704,GO:0071944,GO:0080134,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008961 310.0
LYD3_k127_2007424_1 Thioesterase-like superfamily K07107 - - 0.00000000000000000000000000000000000000000000000419 184.0
LYD3_k127_2007424_2 OmpA family K02557 - - 0.000000000000000000000000000000000000000001211 161.0
LYD3_k127_2010772_0 Peptidase inhibitor I9 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 467.0
LYD3_k127_2010772_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000009031 259.0
LYD3_k127_2010772_2 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000000008754 225.0
LYD3_k127_2010772_3 cyclic nucleotide binding K04739,K10914 - - 0.0002687 52.0
LYD3_k127_2011330_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 417.0
LYD3_k127_2011330_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000009263 256.0
LYD3_k127_2011330_2 Belongs to the beta-ketoacyl-ACP synthases family K09458 - 2.3.1.179 0.00003453 46.0
LYD3_k127_2014878_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000006237 159.0
LYD3_k127_2014878_1 Ricin-type beta-trefoil - - - 0.00000000000000000009447 96.0
LYD3_k127_2022563_0 xylulokinase activity K00848,K00851,K00854,K00862 - 2.7.1.12,2.7.1.17,2.7.1.215,2.7.1.5 2.179e-264 823.0
LYD3_k127_2022563_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 359.0
LYD3_k127_2022563_2 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000001703 231.0
LYD3_k127_2023904_0 Aldo/keto reductase family K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 355.0
LYD3_k127_2023904_1 C-5 cytosine-specific DNA methylase K00558 - 2.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005174 282.0
LYD3_k127_2023904_2 T/G mismatch-specific endonuclease activity K07458 - - 0.000000000000000000000000001147 126.0
LYD3_k127_2023904_3 - - - - 0.00000000000000000000000001328 127.0
LYD3_k127_2035564_0 Hydrogenase formation hypA family K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 585.0
LYD3_k127_2035564_1 AIR synthase related protein, C-terminal domain K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 477.0
LYD3_k127_2035564_2 - - - - 0.00000000000000000000000000000007288 127.0
LYD3_k127_2035564_3 HupF/HypC family K04653 - - 0.0000000000000000000000000005815 116.0
LYD3_k127_2041313_0 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 290.0
LYD3_k127_2041313_1 - - - - 0.00000000000000000000000000000000000000000000000000001342 198.0
LYD3_k127_2041313_2 polysaccharide deacetylase - - - 0.0000000000000000000000000000000005927 145.0
LYD3_k127_2041313_3 TfoX N-terminal domain - - - 0.000000000000000000000000001689 115.0
LYD3_k127_2041313_5 Methyltransferase domain - - - 0.0000000000000000007127 98.0
LYD3_k127_2041313_8 Alpha beta hydrolase - - - 0.000003635 50.0
LYD3_k127_2041313_9 Peptidase family M28 - - - 0.0006148 46.0
LYD3_k127_2041681_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000001356 161.0
LYD3_k127_2041681_1 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000002447 62.0
LYD3_k127_2044624_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 574.0
LYD3_k127_2044624_1 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 308.0
LYD3_k127_2044624_10 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000001008 75.0
LYD3_k127_2044624_11 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000001216 50.0
LYD3_k127_2044624_12 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00004313 48.0
LYD3_k127_2044624_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000008307 259.0
LYD3_k127_2044624_3 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000007597 251.0
LYD3_k127_2044624_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000003427 164.0
LYD3_k127_2044624_5 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000007174 158.0
LYD3_k127_2044624_6 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000009041 131.0
LYD3_k127_2044624_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000659 125.0
LYD3_k127_2044624_8 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 - - 0.00000000000000000000000001787 110.0
LYD3_k127_2044624_9 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000003764 96.0
LYD3_k127_205375_0 Family membership K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000001172 223.0
LYD3_k127_205375_1 Forkhead associated domain - - - 0.00000000000000000000000000000000000000000000000009057 190.0
LYD3_k127_205375_2 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000537 134.0
LYD3_k127_205375_3 alginic acid biosynthetic process K01729 - 4.2.2.3 0.000000000000000000000001731 120.0
LYD3_k127_205375_4 TPR repeat - - - 0.00000000000005942 84.0
LYD3_k127_205375_5 xyloglucan:xyloglucosyl transferase activity - - - 0.00000001178 61.0
LYD3_k127_2054384_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 1.672e-257 820.0
LYD3_k127_2054384_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 542.0
LYD3_k127_2054384_2 PCRF K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 396.0
LYD3_k127_2054384_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 345.0
LYD3_k127_2054384_4 Iron-sulfur K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 320.0
LYD3_k127_2054384_5 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 313.0
LYD3_k127_2054384_6 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001806 275.0
LYD3_k127_2054384_7 Type II IV secretion system protein K02283,K03609 - - 0.000000000000000000000000000000000000001718 167.0
LYD3_k127_2054384_8 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000000000000000000000002484 111.0
LYD3_k127_2054384_9 - - - - 0.00000000000393 74.0
LYD3_k127_2075185_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 3.625e-211 665.0
LYD3_k127_2075185_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol - - - 3.75e-201 638.0
LYD3_k127_2075185_2 Protein of unknown function DUF99 K09120 - - 0.00000000000000000000000000000000000000000000000000001908 205.0
LYD3_k127_2075185_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000004967 158.0
LYD3_k127_2075185_5 PilZ domain - - - 0.00000000000000000007318 94.0
LYD3_k127_2086626_0 aspartate kinase activity K00651,K00928 - 2.3.1.46,2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000559 425.0
LYD3_k127_2086626_1 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006009 284.0
LYD3_k127_2086626_3 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000001231 164.0
LYD3_k127_2086626_4 LysM domain - - - 0.00000000000000000000000000000000000003729 151.0
LYD3_k127_2086626_5 oxidoreductase activity K07114 - - 0.000000000000000000000000000000000001411 154.0
LYD3_k127_2086626_6 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000009135 143.0
LYD3_k127_2086626_7 Secreted repeat of unknown function - - - 0.000000000000000000000006631 114.0
LYD3_k127_2086626_8 Rieske-like [2Fe-2S] domain - - - 0.000307 45.0
LYD3_k127_2099242_0 3-methyl-2-oxobutanoate hydroxymethyltransferase activity K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006199 301.0
LYD3_k127_2099242_1 Deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000000000000002719 225.0
LYD3_k127_2099242_2 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000001091 194.0
LYD3_k127_2099242_3 domain, Protein - - - 0.0000000000000000000000000000000000000000000008324 186.0
LYD3_k127_2099242_4 Kelch - - - 0.00000000000000000000000001751 121.0
LYD3_k127_2111739_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 411.0
LYD3_k127_2111739_1 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009333 345.0
LYD3_k127_2111739_2 Chemotaxis sensory transducer K03406 - - 0.0000000000000000000000000000000000000000000001082 184.0
LYD3_k127_2111739_3 efflux transmembrane transporter activity - - - 0.00000000000000000000000000004243 128.0
LYD3_k127_2111739_4 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K18478 - 2.7.1.15,2.7.1.184 0.0000000000000000000000000001165 130.0
LYD3_k127_2111739_5 DoxX K15977 - - 0.00000000000001013 81.0
LYD3_k127_2111739_6 HEAT repeat - - - 0.00001227 58.0
LYD3_k127_2130834_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000001094 273.0
LYD3_k127_2130834_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000002825 268.0
LYD3_k127_2130834_2 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000002258 202.0
LYD3_k127_2130834_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.000000000000000000000000000000000000000000001538 174.0
LYD3_k127_2130834_4 Zinc-dependent metalloprotease - - - 0.000000000001216 80.0
LYD3_k127_2130834_5 - - - - 0.0000000001076 72.0
LYD3_k127_2130834_6 Pectate lyase - - - 0.00000001141 66.0
LYD3_k127_2130834_7 COG1715 Restriction endonuclease K07448 - - 0.000001842 61.0
LYD3_k127_2134626_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 389.0
LYD3_k127_2134626_1 Belongs to the peptidase M10A family - - - 0.000000008815 66.0
LYD3_k127_2134626_2 Cupin - - - 0.0003332 53.0
LYD3_k127_2146249_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008581 604.0
LYD3_k127_2146249_1 Regulator of chromosome condensation - - - 0.00000000000000000000000000000000000000000001331 177.0
LYD3_k127_2146249_2 YXWGXW repeat (2 copies) - - - 0.00000000009396 73.0
LYD3_k127_2154610_0 acetolactate synthase activity K00003,K01653 - 1.1.1.3,2.2.1.6 0.000000000000000000000000000000000000000000000001134 181.0
LYD3_k127_2154610_1 - - - - 0.00000000009297 68.0
LYD3_k127_21569_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 618.0
LYD3_k127_21569_1 serine threonine protein kinase K00870 - 2.7.1.37 0.0000000000000000000000000000000000000000000000001213 198.0
LYD3_k127_2162870_0 Asparaginase K01424,K01444,K13051 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.19.5,3.5.1.1,3.5.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 346.0
LYD3_k127_2162870_1 Belongs to the RNA methyltransferase TrmD family K00554,K01770 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228,4.6.1.12 0.0000000000000000000000000000000000000000000000000000027 194.0
LYD3_k127_2162870_2 Ribonuclease HII K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000007802 202.0
LYD3_k127_2162870_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000025 168.0
LYD3_k127_2162870_4 PFAM Cupin 2, conserved barrel - - - 0.000000000000000000000000000009605 124.0
LYD3_k127_2162870_5 Nuclease-related domain K07460 - - 0.0000000000000000000000003198 121.0
LYD3_k127_2162870_6 cyclic nucleotide binding K10914 - - 0.00000000000000000004366 103.0
LYD3_k127_2165914_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000578 125.0
LYD3_k127_2165914_1 Cupin - - - 0.00000000000000000000000001353 113.0
LYD3_k127_2168463_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 547.0
LYD3_k127_2168463_1 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003625 340.0
LYD3_k127_2168463_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000004565 239.0
LYD3_k127_2168463_3 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.0000000000000000000000000000000000000000000008558 178.0
LYD3_k127_2168463_5 Kazal type serine protease inhibitors - - - 0.0000000000000001371 92.0
LYD3_k127_2169822_0 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 444.0
LYD3_k127_2169822_1 PFAM Integral membrane protein TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009984 314.0
LYD3_k127_2169822_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 294.0
LYD3_k127_2169822_3 Lipopolysaccharide kinase (Kdo/WaaP) family K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003652 302.0
LYD3_k127_2169822_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009625 256.0
LYD3_k127_2169822_5 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000001502 246.0
LYD3_k127_2169822_7 FHA domain - - - 0.0000000000000000000000000000000000000000000000002635 187.0
LYD3_k127_2169822_8 - - - - 0.0000000000000000000000001216 118.0
LYD3_k127_2172184_0 PFAM Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 593.0
LYD3_k127_2172184_1 acetyltransferase - - - 0.0000000000007176 79.0
LYD3_k127_2180941_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 494.0
LYD3_k127_2180941_1 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000000000000000000000000000000000000004776 171.0
LYD3_k127_2180941_2 Imidazoleglycerol-phosphate dehydratase K01693 GO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.19 0.000000000000000000000000000000000000003517 158.0
LYD3_k127_2190292_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000008403 239.0
LYD3_k127_2191838_0 Tetratricopeptide repeat - - - 0.0000000001382 74.0
LYD3_k127_2198849_0 Transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 523.0
LYD3_k127_2198849_1 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 486.0
LYD3_k127_2198849_2 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001913 280.0
LYD3_k127_2198849_3 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000000000000001737 207.0
LYD3_k127_2198849_4 Transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000009262 162.0
LYD3_k127_2198849_5 - - - - 0.00000000000524 78.0
LYD3_k127_2198849_6 - - - - 0.00000001064 67.0
LYD3_k127_2198849_9 - - - - 0.00005363 51.0
LYD3_k127_2199545_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1022.0
LYD3_k127_2199545_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 470.0
LYD3_k127_2199545_10 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000004092 95.0
LYD3_k127_2199545_11 Belongs to the ompA family K03286 - - 0.0000000002879 73.0
LYD3_k127_2199545_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009057 334.0
LYD3_k127_2199545_3 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001131 274.0
LYD3_k127_2199545_4 MotA/TolQ/ExbB proton channel family - - - 0.00000000000000000000000000000000000000000000000000000000001016 214.0
LYD3_k127_2199545_5 TonB C terminal K03832 - - 0.00000000000000000000000000000000000000000000001985 185.0
LYD3_k127_2199545_6 Response regulator, receiver K02657,K20972 - - 0.000000000000000000000000000000000000000000001071 178.0
LYD3_k127_2199545_7 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000009858 116.0
LYD3_k127_2199545_8 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000004821 117.0
LYD3_k127_2199545_9 Putative transposase of IS4/5 family (DUF4096) - - - 0.000000000000000000000007341 103.0
LYD3_k127_2202091_0 Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 619.0
LYD3_k127_2202091_1 Methylene-tetrahydrofolate reductase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000002858 248.0
LYD3_k127_2202091_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000001449 178.0
LYD3_k127_2203690_0 Belongs to the ClpA ClpB family K03694 - - 3.31e-212 670.0
LYD3_k127_2203690_1 Cleaves the N-terminal amino acid of tripeptides K01258 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0034701,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045148,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.4 0.0000000000000000000000000000000000000000000000000000000000003859 217.0
LYD3_k127_2217283_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 5.966e-214 672.0
LYD3_k127_2217283_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 453.0
LYD3_k127_2217283_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 405.0
LYD3_k127_2217283_3 protein kinase activity - - - 0.00000000000000004001 92.0
LYD3_k127_2217283_4 YHS domain - - - 0.00001384 55.0
LYD3_k127_2223541_0 Bacterial regulatory protein, Fis family K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000517 514.0
LYD3_k127_2223541_1 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000003073 221.0
LYD3_k127_2223541_2 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000001043 160.0
LYD3_k127_2223541_3 Putative bacterial sensory transduction regulator - - - 0.0000000000000000000000000000000000731 139.0
LYD3_k127_2232810_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 399.0
LYD3_k127_2232810_1 Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ) K00878 - 2.7.1.50 0.000000000000000000000000000000000000000000000000000000000000000000000000000002093 274.0
LYD3_k127_2232810_2 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000002544 246.0
LYD3_k127_2232810_3 domain, Protein - - - 0.000000000000000003472 97.0
LYD3_k127_2232810_4 MMPL family K07003 - - 0.000003531 54.0
LYD3_k127_224109_0 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008246 350.0
LYD3_k127_224109_1 Bacterial membrane protein, YfhO - - - 0.00000000000000000000000000000000000000000000001038 191.0
LYD3_k127_224109_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00003,K01139 - 1.1.1.3,2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000001712 176.0
LYD3_k127_224109_3 Transcriptional regulator PadR-like family K10947 - - 0.0007322 46.0
LYD3_k127_2260598_0 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 554.0
LYD3_k127_2260598_1 Type III secretion protein K03230 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 499.0
LYD3_k127_2260598_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000001313 126.0
LYD3_k127_2260598_11 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000004146 117.0
LYD3_k127_2260598_12 - - - - 0.00000000000000002584 95.0
LYD3_k127_2260598_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002178 447.0
LYD3_k127_2260598_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 404.0
LYD3_k127_2260598_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 398.0
LYD3_k127_2260598_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 379.0
LYD3_k127_2260598_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008135 309.0
LYD3_k127_2260598_7 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000002224 263.0
LYD3_k127_2260598_8 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000002409 231.0
LYD3_k127_2260598_9 - - - - 0.00000000000000000000000000000000000000000000000009142 186.0
LYD3_k127_2271089_0 Spermine/spermidine synthase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 613.0
LYD3_k127_2271089_1 alginic acid biosynthetic process K01729 - 4.2.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 512.0
LYD3_k127_2271089_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 392.0
LYD3_k127_2271089_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000002155 214.0
LYD3_k127_2271089_4 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.0000000000000000000000000000007272 124.0
LYD3_k127_2271089_5 BrnA antitoxin of type II toxin-antitoxin system - - - 0.0000000000000000002056 93.0
LYD3_k127_2271089_6 HicB family - - - 0.00000000005887 65.0
LYD3_k127_2273384_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005073 410.0
LYD3_k127_2273384_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 378.0
LYD3_k127_2273384_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 345.0
LYD3_k127_2273384_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003047 303.0
LYD3_k127_2273384_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000003931 61.0
LYD3_k127_2285437_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1034.0
LYD3_k127_229126_0 Alpha-L-arabinofuranosidase B, catalytic - - - 7.971e-248 792.0
LYD3_k127_2300759_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 627.0
LYD3_k127_2300759_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 3.1.11.5 0.0000000000000000000000000000000000000003057 157.0
LYD3_k127_2300759_2 Exodeoxyribonuclease V, gamma subunit K03583 - 3.1.11.5 0.00000002713 64.0
LYD3_k127_2301424_0 General secretory system II protein E domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 564.0
LYD3_k127_2301424_1 Signal transducing histidine kinase, homodimeric domain K02487,K03407,K06596 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000357 304.0
LYD3_k127_2301424_2 response regulator K02658 - - 0.0000000000000000000000000000000001934 147.0
LYD3_k127_2301424_3 Chemotaxis sensory transducer K03406 - - 0.00000000000000000001978 103.0
LYD3_k127_2301424_4 Tetratricopeptide repeat - - - 0.00000000003915 67.0
LYD3_k127_2301424_5 Positive regulator of CheA protein activity CheW K03408 - - 0.0001343 50.0
LYD3_k127_230708_0 Protein kinase domain - - - 3.031e-261 844.0
LYD3_k127_230708_1 Polyprenyl synthetase K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000002207 264.0
LYD3_k127_230708_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000008178 119.0
LYD3_k127_230708_3 Protein of unknown function (DUF2934) - - - 0.00004708 49.0
LYD3_k127_231047_0 CBD_II K01179 - 3.2.1.4 4.6e-282 879.0
LYD3_k127_231047_1 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000004936 150.0
LYD3_k127_231047_2 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000000000000000852 94.0
LYD3_k127_2310840_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 381.0
LYD3_k127_2310840_1 Glycosyl transferase, family 2 K01002,K20534 - 2.7.8.20 0.0000000000000000002076 102.0
LYD3_k127_2311055_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1364.0
LYD3_k127_2311055_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 452.0
LYD3_k127_2311055_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000878 400.0
LYD3_k127_2311055_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 346.0
LYD3_k127_2311055_4 PFAM glycoside hydrolase family 5 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 313.0
LYD3_k127_2311055_5 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001744 278.0
LYD3_k127_2311055_6 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000008417 232.0
LYD3_k127_2311055_8 nickel-responsive regulator K07722 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000002342 79.0
LYD3_k127_2311055_9 PEGA domain - - - 0.0006445 51.0
LYD3_k127_2316019_0 glutamate synthase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 422.0
LYD3_k127_2316019_1 S1 domain K00243 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 361.0
LYD3_k127_2316019_2 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004017 281.0
LYD3_k127_2316019_3 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000001323 200.0
LYD3_k127_2316019_4 - - - - 0.00000000000000000000000004862 117.0
LYD3_k127_2316019_5 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000001155 80.0
LYD3_k127_2316019_6 Conserved region in glutamate synthase - - - 0.0000002806 56.0
LYD3_k127_2316044_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 482.0
LYD3_k127_2316044_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000727 400.0
LYD3_k127_2316044_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006161 381.0
LYD3_k127_2316044_3 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005672 276.0
LYD3_k127_2316044_4 Branched-chain amino acid ATP-binding cassette transporter K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001161 278.0
LYD3_k127_2316044_5 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000467 164.0
LYD3_k127_2325286_0 - - - - 0.000000000000000000000000005447 128.0
LYD3_k127_2325286_1 short-chain dehydrogenase - - - 0.0002844 47.0
LYD3_k127_2325315_0 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000379 211.0
LYD3_k127_2325315_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000000000004388 89.0
LYD3_k127_2325315_2 Furin-like repeats - - - 0.0000004169 63.0
LYD3_k127_232718_1 Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000003126 213.0
LYD3_k127_232718_2 Belongs to the bacterial histone-like protein family K05788 - - 0.000000000000000000000007735 104.0
LYD3_k127_2345565_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 497.0
LYD3_k127_2345565_2 CoA-binding protein K06929 - - 0.0000000000000000000000000000005321 125.0
LYD3_k127_234829_0 PFAM response regulator receiver K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007473 276.0
LYD3_k127_2370094_0 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 404.0
LYD3_k127_2370094_1 PspA/IM30 family K03969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004898 270.0
LYD3_k127_2370094_2 - - - - 0.000000000000006193 82.0
LYD3_k127_2370094_3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000004927 49.0
LYD3_k127_2371144_0 TonB dependent receptor - - - 0.0 1049.0
LYD3_k127_2371144_1 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007556 526.0
LYD3_k127_2371144_10 - - - - 0.0000002493 54.0
LYD3_k127_2371144_2 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 513.0
LYD3_k127_2371144_3 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000004697 234.0
LYD3_k127_2371144_4 AAA domain - - - 0.0000000000000000000000000000000000000000163 161.0
LYD3_k127_2371144_5 PFAM Cyclic nucleotide-binding - - - 0.0000000000000000000000000000001179 133.0
LYD3_k127_2371144_6 Transcriptional regulator - - - 0.000000000000000138 82.0
LYD3_k127_2371144_7 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.00000000000001465 88.0
LYD3_k127_2371144_8 PFAM cytochrome c, class I K08738 - - 0.000000000000094 74.0
LYD3_k127_2372178_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 548.0
LYD3_k127_2372178_1 DNA-templated transcription, initiation - - - 0.000192 52.0
LYD3_k127_2376140_0 Class II Aldolase and Adducin N-terminal domain K03077 - 5.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 296.0
LYD3_k127_2376140_1 involved in the transport of maltose and maltodextrins K02024 - - 0.0000000000000000000000000000000008892 143.0
LYD3_k127_2378137_0 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000001195 248.0
LYD3_k127_2378137_1 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000000000000004116 175.0
LYD3_k127_2378137_2 Diguanylate cyclase with GAF sensor - - - 0.00000000000000008795 94.0
LYD3_k127_2385030_0 GTP-binding protein K06207 - - 7.498e-195 617.0
LYD3_k127_2385030_1 PD-(D/E)XK nuclease superfamily - - - 0.0001958 47.0
LYD3_k127_2387532_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000009221 230.0
LYD3_k127_2387532_1 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000005444 160.0
LYD3_k127_2387532_2 Protein of unknown function (DUF1517) - - - 0.0000000000002166 82.0
LYD3_k127_2387532_3 cysteine-type peptidase activity - - - 0.00001763 53.0
LYD3_k127_2388930_0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000966 363.0
LYD3_k127_2388930_1 of the major facilitator superfamily K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003499 261.0
LYD3_k127_2388930_2 - - - - 0.0000000000000000061 96.0
LYD3_k127_2390080_0 Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA K21782 - 1.3.8.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009458 479.0
LYD3_k127_2390080_1 Non-ribosomal peptide synthetase modules and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 428.0
LYD3_k127_2390080_2 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007862 369.0
LYD3_k127_2390080_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000001767 271.0
LYD3_k127_2390080_4 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000009014 157.0
LYD3_k127_2390080_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP - - - 0.0000000000002552 83.0
LYD3_k127_2390080_6 ExbD TolR K03559 - - 0.000000000001189 70.0
LYD3_k127_2390080_7 Acyl carrier protein - - - 0.0000001195 60.0
LYD3_k127_2390080_8 N-terminal domain of oxidoreductase K07119 - - 0.00002409 48.0
LYD3_k127_2390080_9 Carrier of the growing fatty acid chain in fatty acid biosynthesis - - - 0.00003916 48.0
LYD3_k127_239232_0 Bacterial regulatory protein, Fis family K02584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 438.0
LYD3_k127_239232_1 - - - - 0.000000000000000000000000000000000000000002967 165.0
LYD3_k127_239232_2 - - - - 0.0000000000002908 72.0
LYD3_k127_239232_3 - - - - 0.000000009016 66.0
LYD3_k127_2402142_0 Serine threonine protein kinase - - - 0.000000000000000000000000000000002396 137.0
LYD3_k127_2402142_1 Domain of unknown function (DUF4388) - - - 0.00000000000002116 78.0
LYD3_k127_2418211_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009586 407.0
LYD3_k127_2418211_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009688 317.0
LYD3_k127_2418211_2 PQQ enzyme repeat K17713 - - 0.00000000000000000000000000000000000000000000000000000003171 207.0
LYD3_k127_2418211_3 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000006043 204.0
LYD3_k127_2418211_4 Protein of unknown function (DUF507) K09804 - - 0.0000000000000000000000000000000000000000000000000001994 190.0
LYD3_k127_2418211_5 PilZ domain - - - 0.00000000000000000000000001986 118.0
LYD3_k127_2424432_0 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001268 289.0
LYD3_k127_2424432_1 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002588 289.0
LYD3_k127_2424432_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000003985 153.0
LYD3_k127_2426317_0 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005297 372.0
LYD3_k127_2426317_1 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.000000000000000000000000000000004603 132.0
LYD3_k127_2426317_2 - - - - 0.0000000000000000000000003612 109.0
LYD3_k127_2426317_3 - - - - 0.0000000000000000000005696 104.0
LYD3_k127_243357_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000995 509.0
LYD3_k127_243357_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009295 428.0
LYD3_k127_243357_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 379.0
LYD3_k127_243357_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002328 279.0
LYD3_k127_243357_4 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002097 250.0
LYD3_k127_243357_5 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000006532 237.0
LYD3_k127_243357_6 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000001501 230.0
LYD3_k127_243357_7 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000003915 205.0
LYD3_k127_2433941_0 5TM C-terminal transporter carbon starvation CstA K06200 - - 8.067e-234 742.0
LYD3_k127_2433941_1 Flavin containing amine oxidoreductase K01854 - 5.4.99.9 0.000000000000000000000000000000000000000000000000000000000002925 217.0
LYD3_k127_2433941_2 PAS domain - - - 0.0000000000000000000000000000000000000000000006081 184.0
LYD3_k127_2438993_0 EcsC protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001381 273.0
LYD3_k127_2438993_2 cytochrome K08738 - - 0.000003317 57.0
LYD3_k127_2445699_0 High confidence in function and specificity - - - 1.965e-237 752.0
LYD3_k127_2445699_1 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 505.0
LYD3_k127_2445699_2 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009087 383.0
LYD3_k127_2445699_3 Histidine kinase K07777 - 2.7.13.3 0.0000000004193 64.0
LYD3_k127_2445699_4 Tetratricopeptide repeat - - - 0.0002347 52.0
LYD3_k127_2452089_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K18501 - - 2.445e-208 679.0
LYD3_k127_2452089_1 transcription factor binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 492.0
LYD3_k127_2452089_10 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000000000004783 182.0
LYD3_k127_2452089_11 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000002656 179.0
LYD3_k127_2452089_12 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000000000009647 182.0
LYD3_k127_2452089_14 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.4.1.2,1.4.1.3,1.4.1.4 0.000000000000000000000000000000000003329 138.0
LYD3_k127_2452089_15 - - - - 0.0000000000000000000000000000000009395 134.0
LYD3_k127_2452089_19 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.000000000000000000001336 99.0
LYD3_k127_2452089_2 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01697,K01738,K12339 - 2.5.1.47,4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 430.0
LYD3_k127_2452089_20 chaperone-mediated protein folding - - - 0.0000000000000001821 89.0
LYD3_k127_2452089_21 - - - - 0.000000000369 72.0
LYD3_k127_2452089_3 Protein kinase domain K08884 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 314.0
LYD3_k127_2452089_4 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003679 275.0
LYD3_k127_2452089_5 4Fe-4S dicluster domain K16887 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001359 265.0
LYD3_k127_2452089_6 Uncharacterised protein family (UPF0158) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007832 250.0
LYD3_k127_2452089_7 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004991 241.0
LYD3_k127_2452089_8 PFAM Nitrate reductase gamma subunit - - - 0.0000000000000000000000000000000000000000000000000000000000001613 223.0
LYD3_k127_2452089_9 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K00184 - - 0.0000000000000000000000000000000000000000000000000000009388 209.0
LYD3_k127_2464388_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000859 162.0
LYD3_k127_2464388_1 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000003425 119.0
LYD3_k127_2465096_0 Pyruvate phosphate dikinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001333 579.0
LYD3_k127_2466900_0 Glycoside hydrolase family 44 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008504 444.0
LYD3_k127_2466900_1 Poly3-Hydroxybutyrate Depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 390.0
LYD3_k127_2479262_0 Periplasmic protein TonB links inner and outer membranes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 534.0
LYD3_k127_2494490_0 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000766 263.0
LYD3_k127_2494490_1 PFAM Annexin repeat - - - 0.000000000000000000000000000001099 141.0
LYD3_k127_2494490_2 Methyltransferase domain - - - 0.000000000000000000000000000005797 121.0
LYD3_k127_2494490_3 LysM domain - - - 0.00000000000000000004665 105.0
LYD3_k127_2494490_4 - - - - 0.0000000005101 69.0
LYD3_k127_2496676_0 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.000000000000000000000000000000000000000006294 171.0
LYD3_k127_2496676_1 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.00000000000000000000007051 99.0
LYD3_k127_2496676_2 - - - - 0.000001845 60.0
LYD3_k127_2506165_0 Homologues of snake disintegrins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 523.0
LYD3_k127_2506165_1 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 402.0
LYD3_k127_251993_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 559.0
LYD3_k127_251993_1 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 417.0
LYD3_k127_251993_2 Tetratricopeptide TPR_2 repeat protein K12600 - - 0.00000000000000000000000000000000000000000000000000002233 201.0
LYD3_k127_251993_3 LamB porin K02024 - - 0.00000000000000000000000000000000000007841 151.0
LYD3_k127_2523161_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.983e-271 846.0
LYD3_k127_2523161_1 Ribbon-helix-helix domain - - - 0.00000000000000000003794 93.0
LYD3_k127_2523161_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000818 97.0
LYD3_k127_2523161_3 repeat protein - - - 0.0000735 56.0
LYD3_k127_253018_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008199 497.0
LYD3_k127_253018_1 impB/mucB/samB family K14161 - - 0.000000000000000004512 98.0
LYD3_k127_2532075_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 622.0
LYD3_k127_2532075_1 Spore coat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009515 360.0
LYD3_k127_2532075_2 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 316.0
LYD3_k127_2532075_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000745 317.0
LYD3_k127_2532075_4 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003848 274.0
LYD3_k127_2532075_5 CAAX protease self-immunity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002047 260.0
LYD3_k127_2533413_0 GTP-binding protein K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 286.0
LYD3_k127_2533413_1 Lysylphosphatidylglycerol synthase TM region - - - 0.000000000000000000000000000000000000000000000000000000000000000000007362 247.0
LYD3_k127_2533413_2 - - - - 0.0000000006599 69.0
LYD3_k127_2533413_3 Sigma-70, region 4 - - - 0.000000001202 66.0
LYD3_k127_254751_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008015 439.0
LYD3_k127_254751_1 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000107 192.0
LYD3_k127_254751_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000222 188.0
LYD3_k127_2558649_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 7.431e-272 859.0
LYD3_k127_2558649_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007674 414.0
LYD3_k127_2558649_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007238 346.0
LYD3_k127_2558649_3 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001311 298.0
LYD3_k127_2558649_4 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000003328 242.0
LYD3_k127_2558649_5 Transcriptional regulator, CarD family K07736 - - 0.000000000000000000000000000000000000000000000000000000000001177 213.0
LYD3_k127_2558649_6 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.00000000000000000000000000000000001223 155.0
LYD3_k127_2558649_7 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00000000000000000000000000000004894 130.0
LYD3_k127_2558649_8 R3H domain K06346 - - 0.00000000000000000000000000002184 125.0
LYD3_k127_2558649_9 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000001574 106.0
LYD3_k127_2562969_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 323.0
LYD3_k127_2562969_1 COG1233 Phytoene dehydrogenase and related - - - 0.0000000000000000000000000000000000000000000000000003383 207.0
LYD3_k127_2562969_3 Acylphosphatase K01512 - 3.6.1.7 0.0000000000000001126 87.0
LYD3_k127_2562969_4 Trm112p-like protein K09791 - - 0.00000000001094 67.0
LYD3_k127_2563832_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007376 367.0
LYD3_k127_2563832_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 348.0
LYD3_k127_2563832_2 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000000000000000000000000004714 225.0
LYD3_k127_2563832_3 protein serine threonine kinase activity, protein-tyrosine kinase activity, ATP binding, penicillin binding and protein amino acid phosphorylation K08282,K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000374 198.0
LYD3_k127_2563832_4 PFAM Rieske 2Fe-2S K02636 - 1.10.9.1 0.0000000000003345 79.0
LYD3_k127_2563832_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000001853 63.0
LYD3_k127_2563832_6 Cytochrome c - - - 0.000001428 55.0
LYD3_k127_2567580_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008774 337.0
LYD3_k127_2567580_1 Outer membrane efflux protein K12543 - - 0.000000000000000000000000000000005698 143.0
LYD3_k127_2570111_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 538.0
LYD3_k127_2570111_1 glutathione-regulated potassium exporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007197 439.0
LYD3_k127_2570111_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 368.0
LYD3_k127_2570111_4 dihydroxy-acid dehydratase activity K01687 - 4.2.1.9 0.000000000003851 67.0
LYD3_k127_2570111_5 PFAM Dynamin family protein - - - 0.0000002583 58.0
LYD3_k127_2570111_6 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000698 50.0
LYD3_k127_2587127_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.36e-277 869.0
LYD3_k127_2587127_1 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000027 230.0
LYD3_k127_2587127_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000003046 207.0
LYD3_k127_2587127_3 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000189 147.0
LYD3_k127_2592161_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001817 273.0
LYD3_k127_2594671_0 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002481 289.0
LYD3_k127_2594671_1 TPR repeat - - - 0.0002703 51.0
LYD3_k127_2594671_2 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.0003154 54.0
LYD3_k127_2597672_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 GO:0003674,GO:0003824,GO:0003852,GO:0003985,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046912,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.3.13 1.012e-201 644.0
LYD3_k127_2597672_1 3-deoxy-7-phosphoheptulonate synthase activity K00661,K03856,K04092,K04093,K04516,K04518,K14170,K14187 GO:0003674,GO:0003824,GO:0004106,GO:0004664,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016866,GO:0017144,GO:0019438,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 1.3.1.12,2.3.1.79,2.5.1.54,4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 498.0
LYD3_k127_2600294_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000001245 141.0
LYD3_k127_2600294_1 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000005539 116.0
LYD3_k127_2600294_2 Belongs to the ompA family K03286,K20276 - - 0.000000000001216 80.0
LYD3_k127_2600294_3 Belongs to the ompA family - - - 0.000000005855 68.0
LYD3_k127_2602424_0 RHS Repeat - - - 1.864e-248 852.0
LYD3_k127_2602424_1 protein kinase activity - - - 0.000000000000003733 92.0
LYD3_k127_2602424_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000003007 86.0
LYD3_k127_2610318_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 2.398e-255 796.0
LYD3_k127_2610318_1 PFAM D12 class N6 adenine-specific DNA methyltransferase K06223 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000002943 219.0
LYD3_k127_2611151_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 494.0
LYD3_k127_2611151_1 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007321 273.0
LYD3_k127_2611151_2 - - - - 0.0000001113 63.0
LYD3_k127_2611151_3 PD-(D/E)XK nuclease superfamily - - - 0.00006446 47.0
LYD3_k127_261180_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.158e-218 691.0
LYD3_k127_261180_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000006832 214.0
LYD3_k127_261180_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000003682 196.0
LYD3_k127_261180_3 Type II secretion system (T2SS), protein F K02653 - - 0.000000000000000002299 98.0
LYD3_k127_2612112_0 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000000000000000003561 208.0
LYD3_k127_2612112_1 DnaK suppressor protein - - - 0.0000000000000000000000000000005046 128.0
LYD3_k127_2612112_2 - - - - 0.00000000000000000009568 100.0
LYD3_k127_2612112_3 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00000000008856 70.0
LYD3_k127_2612112_4 Domain of unknown function (DUF4215) - - - 0.00000001937 59.0
LYD3_k127_2613595_0 PFAM Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000005327 136.0
LYD3_k127_2613595_1 deoxyhypusine monooxygenase activity - - - 0.000000000000009681 82.0
LYD3_k127_2617714_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 5.774e-253 791.0
LYD3_k127_2617714_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004345 422.0
LYD3_k127_2617714_2 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000003862 193.0
LYD3_k127_2617714_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000005926 138.0
LYD3_k127_2617714_4 Mycolic acid cyclopropane synthetase K15467 - 2.1.1.315 0.00000000000000000323 94.0
LYD3_k127_2617714_5 - - - - 0.00000005334 55.0
LYD3_k127_2617714_7 phosphoenolpyruvate carboxylase activity K01595 - 4.1.1.31 0.0002427 46.0
LYD3_k127_2617714_8 - - - - 0.0004734 47.0
LYD3_k127_261830_0 - - - - 0.0000000000000000216 94.0
LYD3_k127_262792_0 beta-lactamase - - - 1.201e-210 679.0
LYD3_k127_262792_1 virion core protein (lumpy skin disease virus) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007323 353.0
LYD3_k127_262792_2 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 336.0
LYD3_k127_262792_3 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000008951 130.0
LYD3_k127_2639967_0 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000175 273.0
LYD3_k127_2639967_1 Pectinesterase K01051 - 3.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000006085 268.0
LYD3_k127_2639967_2 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000001593 128.0
LYD3_k127_2639967_3 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000002083 115.0
LYD3_k127_2644394_0 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000003059 226.0
LYD3_k127_2644394_2 Belongs to the peptidase S1B family - - - 0.000000001307 70.0
LYD3_k127_2645650_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 5.253e-315 979.0
LYD3_k127_2645650_1 Elongator protein 3, MiaB family, Radical SAM K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 435.0
LYD3_k127_2645650_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000005229 211.0
LYD3_k127_2645650_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000001258 195.0
LYD3_k127_2645650_4 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000008169 172.0
LYD3_k127_2645650_5 MafB19-like deaminase - - - 0.0000000000000000000000000000000000003757 153.0
LYD3_k127_2654797_0 Glucuronate isomerase K01812 GO:0005975,GO:0005996,GO:0006063,GO:0006064,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016052,GO:0016054,GO:0019585,GO:0019586,GO:0019698,GO:0019752,GO:0032787,GO:0042839,GO:0042840,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046365,GO:0046395,GO:0046396,GO:0046397,GO:0071704,GO:0072329,GO:1901575 5.3.1.12 4.235e-204 644.0
LYD3_k127_2654797_1 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 421.0
LYD3_k127_2654797_2 tagaturonate epimerase K21619 - 5.1.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 356.0
LYD3_k127_2654797_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 370.0
LYD3_k127_2654797_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000235 291.0
LYD3_k127_2654797_5 Belongs to the glycosyl hydrolase 28 family K01184 - 3.2.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000002334 259.0
LYD3_k127_2654797_6 Domain of unknown function (DUF4861) - - - 0.0000000000000000000000000000000000000000000000000001539 210.0
LYD3_k127_2658744_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 405.0
LYD3_k127_2658744_1 serine threonine protein kinase - - - 0.000000007968 68.0
LYD3_k127_2658744_2 exodeoxyribonuclease I activity - - - 0.0000001608 57.0
LYD3_k127_2660215_0 helix_turn_helix, Lux Regulon K11618 - - 0.00000000000000000000000000000000000000000000000000000000000000005545 234.0
LYD3_k127_2660215_1 PhoQ Sensor - - - 0.000000000000000000000000000000000000000001986 176.0
LYD3_k127_2660215_2 Histidine kinase K07675 - 2.7.13.3 0.00000000000000000000002467 103.0
LYD3_k127_2660215_3 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.0000004257 52.0
LYD3_k127_2660923_0 protein conserved in bacteria K11891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003642 629.0
LYD3_k127_2660923_1 protein conserved in bacteria K11893 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007653 272.0
LYD3_k127_2660923_2 Type VI secretion system protein DotU K11892 - - 0.0000000000000000000000000000000000000000000001748 175.0
LYD3_k127_2660923_3 Uncharacterized protein conserved in bacteria (DUF2094) K11890 - - 0.0000000000000000000000000057 123.0
LYD3_k127_2663407_0 Transposase domain (DUF772) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 611.0
LYD3_k127_2672672_0 - - - - 0.0000000000000000000000000000000000000000000000007296 195.0
LYD3_k127_2672672_1 LexA-binding, inner membrane-associated putative hydrolase K07038 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000001807 156.0
LYD3_k127_2672672_2 oligosaccharyl transferase activity - - - 0.000000000068 71.0
LYD3_k127_2683257_0 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000205 237.0
LYD3_k127_2683257_1 SMART Tetratricopeptide domain protein - - - 0.0000000000000000000000000000000001821 151.0
LYD3_k127_2693427_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 511.0
LYD3_k127_2693427_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 377.0
LYD3_k127_2693427_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000001874 232.0
LYD3_k127_2693427_3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000003296 165.0
LYD3_k127_2693427_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000005086 131.0
LYD3_k127_2693427_5 Lysin motif K06194 - - 0.000000000000000000000000001343 119.0
LYD3_k127_2693427_6 PFAM regulatory protein, MerR - - - 0.000000000000000000000000183 110.0
LYD3_k127_2693427_7 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000005472 61.0
LYD3_k127_2698387_0 Putative glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 565.0
LYD3_k127_2702435_0 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 375.0
LYD3_k127_2702435_1 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 310.0
LYD3_k127_2702435_2 S-acyltransferase activity - - - 0.0000000000000002 88.0
LYD3_k127_2702435_3 DnaJ domain protein - - - 0.000000000000004264 82.0
LYD3_k127_2702435_5 2TM domain - - - 0.00000000003322 72.0
LYD3_k127_2702435_7 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000002308 58.0
LYD3_k127_2702435_8 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.000007941 57.0
LYD3_k127_2702435_9 Protein of unknown function (DUF3618) - - - 0.00002037 54.0
LYD3_k127_2707329_0 arsenical-resistance protein K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008398 522.0
LYD3_k127_2707329_1 PFAM Methyltransferase type 11 K07755 - 2.1.1.137 0.0000000000000000000000000000000000000000000000000000000000000000000000008364 256.0
LYD3_k127_2707329_2 regulation of canonical Wnt signaling pathway involved in osteoblast differentiation - - - 0.00000000000000000000000000000000000000000000000000000000000002826 246.0
LYD3_k127_2707329_3 Belongs to the low molecular weight phosphotyrosine protein phosphatase family K03741 - 1.20.4.1 0.00000000000000000000000000000000000000009874 164.0
LYD3_k127_2707329_4 metallopeptidase activity - - - 0.00000000000000000000000000000000000006194 166.0
LYD3_k127_2707329_5 PFAM regulatory protein, ArsR K03892 - - 0.000000000000000003213 89.0
LYD3_k127_2708465_0 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005662 480.0
LYD3_k127_2708465_1 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 372.0
LYD3_k127_2708465_10 Bacterial membrane protein, YfhO - - - 0.0003251 52.0
LYD3_k127_2708465_11 integral membrane protein - - - 0.0007513 51.0
LYD3_k127_2708465_2 Mannosyltransferase (PIG-V) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000375 291.0
LYD3_k127_2708465_3 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000008078 212.0
LYD3_k127_2708465_4 - - - - 0.0000000000000000000000000000000000000000000046 178.0
LYD3_k127_2708465_5 Peptidase family M23 - - - 0.000000000000000000008112 104.0
LYD3_k127_2708465_7 amine dehydrogenase activity - - - 0.00000002593 66.0
LYD3_k127_2708465_8 Psort location CytoplasmicMembrane, score - - - 0.0000004251 58.0
LYD3_k127_2708465_9 Transposase - - - 0.000001989 54.0
LYD3_k127_2725396_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000005325 207.0
LYD3_k127_2725396_1 ATPase (AAA superfamily - - - 0.0000000000000000000000000000000000000000000007654 175.0
LYD3_k127_2725396_2 Porin-like glycoporin RafY - - - 0.000003737 60.0
LYD3_k127_2730519_0 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 1.494e-266 828.0
LYD3_k127_2730519_1 FR47-like protein - - - 0.000000000000000000000000000000000000001065 152.0
LYD3_k127_2730519_2 PFAM OsmC family protein K04063 - - 0.000000000000000000000000000000000000007911 149.0
LYD3_k127_2730519_3 - - - - 0.000000000000000000003689 100.0
LYD3_k127_2734930_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 5.08e-268 858.0
LYD3_k127_2734930_1 oxidoreductase activity K07114 - - 0.0000000000000000000000001627 120.0
LYD3_k127_2734930_2 Belongs to the glycosyl hydrolase 67 family K01235 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0010413,GO:0016052,GO:0016787,GO:0016798,GO:0033939,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0045491,GO:0045493,GO:0071554,GO:0071704,GO:1901575,GO:2000886 3.2.1.139 0.00000000000000003048 91.0
LYD3_k127_2734930_3 polysaccharide catabolic process K01218 - 3.2.1.78 0.0004496 52.0
LYD3_k127_2737446_0 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000006972 232.0
LYD3_k127_2737446_1 Molybdopterin oxidoreductase Fe4S4 domain K08357 - - 0.0000000000000000000000000000000001805 147.0
LYD3_k127_2737446_2 PFAM Polysulphide reductase, NrfD K00185 - - 0.0007695 53.0
LYD3_k127_2738174_0 domain, Protein - - - 0.000000000000000000000001028 118.0
LYD3_k127_2738174_1 HNH endonuclease - - - 0.0000000000000000004672 91.0
LYD3_k127_2738174_2 Transposase IS200 like - - - 0.000000000000000001125 91.0
LYD3_k127_275028_0 Inositol monophosphatase K01092 GO:0003674,GO:0003824,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0042578,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000002696 237.0
LYD3_k127_275028_1 Band 7 protein K07192 - - 0.0000000000000000000000000002006 123.0
LYD3_k127_275028_2 - - - - 0.00000000000000001626 89.0
LYD3_k127_275028_3 Protein conserved in bacteria K09955 - - 0.000000000006578 74.0
LYD3_k127_275028_4 - - - - 0.00001744 53.0
LYD3_k127_2750340_0 Endoglucanase K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 342.0
LYD3_k127_2750340_1 Glycoside hydrolase family - - - 0.0008864 51.0
LYD3_k127_2756087_0 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000007027 197.0
LYD3_k127_2756087_1 Belongs to the SUA5 family K07566 - 2.7.7.87 0.00000000000000000000000000000000000000001033 163.0
LYD3_k127_2756087_2 Membrane proteins related to metalloendopeptidases - - - 0.00000000000745 66.0
LYD3_k127_2756087_3 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00009619 55.0
LYD3_k127_2756087_4 PFAM regulatory protein LuxR - - - 0.0001297 52.0
LYD3_k127_2757737_0 non-ribosomal peptide synthetase K02364 - 6.3.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 637.0
LYD3_k127_2771885_0 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003962 295.0
LYD3_k127_2771885_1 PIN domain - - - 0.000000000000000000000000000000000008897 140.0
LYD3_k127_2771885_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000001323 90.0
LYD3_k127_2771885_4 lyase activity - - - 0.000000000007592 76.0
LYD3_k127_2771885_5 - - - - 0.00001106 55.0
LYD3_k127_277978_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000002575 216.0
LYD3_k127_277978_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000002799 119.0
LYD3_k127_2781624_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 550.0
LYD3_k127_2781624_1 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 336.0
LYD3_k127_2781624_2 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004611 332.0
LYD3_k127_2781624_3 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000006895 121.0
LYD3_k127_278515_0 RecQ zinc-binding K03654 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 465.0
LYD3_k127_278515_1 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.000000000000000000000000000000000001908 154.0
LYD3_k127_2786432_0 Belongs to the GPI family K01810 GO:0003674,GO:0003824,GO:0004347,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033554,GO:0034404,GO:0034599,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042802,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0070887,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.3.1.9 9.931e-261 814.0
LYD3_k127_2786432_1 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 8.337e-233 748.0
LYD3_k127_2786432_2 Cleaves the N-terminal amino acid of tripeptides K01258 - 3.4.11.4 0.00000000000000000000000000000000000000000000000000000000000000000002742 239.0
LYD3_k127_2786432_3 Belongs to the glycosyl hydrolase family 6 K19668,K20844 - 3.2.1.55,3.2.1.91 0.000000000003697 79.0
LYD3_k127_2787177_0 COGs COG4584 Transposase and inactivated derivatives - - - 0.000000000000000000000000000000000000000000000000001396 205.0
LYD3_k127_2787177_1 chromosome segregation K00986,K03497 - 2.7.7.49 0.00023 53.0
LYD3_k127_2793173_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 471.0
LYD3_k127_2793696_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 556.0
LYD3_k127_2793696_1 Ammonium Transporter Family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 349.0
LYD3_k127_2793696_2 Methyltransferase small domain K15460 - 2.1.1.223 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005602 331.0
LYD3_k127_2793696_4 cephalosporin hydroxylase - GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009987,GO:0016740,GO:0016741,GO:0016999,GO:0017000,GO:0017144,GO:0030770,GO:0032259,GO:0044237,GO:0044249 - 0.0000000000000000000000000006179 125.0
LYD3_k127_2793696_5 - - - - 0.0000008032 55.0
LYD3_k127_2807197_0 TIGRFAM Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 479.0
LYD3_k127_2807197_1 Sporulation related domain - - - 0.000000000000000000000000000000343 134.0
LYD3_k127_2824525_0 PFAM D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase K01621 - 4.1.2.22,4.1.2.9 8.314e-285 881.0
LYD3_k127_2824525_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000787 419.0
LYD3_k127_283513_0 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009927 343.0
LYD3_k127_283513_1 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 312.0
LYD3_k127_283513_2 capsule polysaccharide biosynthetic process - - - 0.0002091 54.0
LYD3_k127_283513_3 oligosaccharyl transferase activity - - - 0.0003642 52.0
LYD3_k127_2863090_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00437,K00533 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.12.2.1,1.12.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003029 542.0
LYD3_k127_2863090_1 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000179 126.0
LYD3_k127_2863090_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000001486 120.0
LYD3_k127_2863090_3 FecR protein - - - 0.000005287 59.0
LYD3_k127_2867242_0 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000001208 243.0
LYD3_k127_2867242_1 Thioredoxin - - - 0.0000000000000000000000000000000000000764 155.0
LYD3_k127_2867242_2 - - - - 0.0000002997 55.0
LYD3_k127_2879200_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 484.0
LYD3_k127_2879200_1 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 419.0
LYD3_k127_2879200_2 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016874,GO:0016886,GO:0030312,GO:0033554,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005309 403.0
LYD3_k127_2879200_3 ABC-type branched-chain amino acid transport systems, periplasmic component K01999,K11954 - - 0.0000000000000000000000000000000000000000000000000001048 203.0
LYD3_k127_2879200_4 epimerase dehydratase K00091 - 1.1.1.219 0.00000000000000000000000000000002607 131.0
LYD3_k127_2879200_5 Periplasmic binding protein LacI transcriptional regulator K10439 - - 0.00000002182 66.0
LYD3_k127_2881179_0 Glycosyl hydrolases family 28 - - - 1.248e-206 659.0
LYD3_k127_2881179_1 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000001292 228.0
LYD3_k127_2881179_2 TIGRFAM thioredoxin K03672 - 1.8.1.8 0.00000000000000000000000000000000000001082 153.0
LYD3_k127_2881179_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000001 134.0
LYD3_k127_2881179_4 Glycosyl transferase family 41 - - - 0.000000000000001173 91.0
LYD3_k127_2881179_5 - - - - 0.000000000000003097 85.0
LYD3_k127_2889937_0 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004683 294.0
LYD3_k127_2889937_1 Membrane - - - 0.000000000000000000000000000000000000000000000000000004722 205.0
LYD3_k127_2889937_2 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000002543 188.0
LYD3_k127_2889937_3 - - - - 0.000000000000000000000002916 119.0
LYD3_k127_2889937_4 Alpha galactosidase A K07407 - 3.2.1.22 0.0000000000000000007933 98.0
LYD3_k127_2895748_0 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 593.0
LYD3_k127_2895748_1 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000115 118.0
LYD3_k127_2895748_2 Uncharacterized protein conserved in bacteria (DUF2135) - - - 0.00005411 55.0
LYD3_k127_2903351_0 radical SAM K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 583.0
LYD3_k127_2903351_2 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000009841 98.0
LYD3_k127_2903351_3 Spermidine synthase K00797 - 2.5.1.16 0.000000000005772 75.0
LYD3_k127_2903351_4 membrane transporter protein K07090 - - 0.00000000346 61.0
LYD3_k127_2905383_0 NADH-quinone oxidoreductase subunit F K18005 - 1.12.1.2 1.143e-197 634.0
LYD3_k127_2905383_1 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 559.0
LYD3_k127_2905383_2 Glycosyl hydrolase catalytic core - - - 0.000000000000000000000000000000000000000000000000000000000001346 226.0
LYD3_k127_2905383_3 4Fe-4S single cluster domain K18006 - 1.12.1.2 0.00000000000000000000000000000000000000000002927 166.0
LYD3_k127_2909227_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009752 336.0
LYD3_k127_2909227_1 Flagellar Motor Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000003485 231.0
LYD3_k127_2909227_2 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000217 151.0
LYD3_k127_2909227_4 cell envelope organization K05807,K08309 - - 0.0000002029 62.0
LYD3_k127_2910289_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 429.0
LYD3_k127_2910289_1 Iron only hydrogenase large subunit, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002945 282.0
LYD3_k127_2910289_2 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000001563 163.0
LYD3_k127_2910618_0 - - - - 0.000000000000000000000000000000000000000000000000618 190.0
LYD3_k127_2910618_1 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000001027 163.0
LYD3_k127_2910618_2 oligosaccharyl transferase activity - - - 0.00000000001186 75.0
LYD3_k127_2910618_3 Pfam:DUF2029 - - - 0.00000000176 70.0
LYD3_k127_2910618_4 PFAM Flp Fap pilin component K02651 - - 0.000001475 55.0
LYD3_k127_2912050_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 9.287e-203 642.0
LYD3_k127_2912050_1 phosphoglycolate phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 287.0
LYD3_k127_292400_0 Insulinase (Peptidase family M16) K07263 - - 8.742e-208 679.0
LYD3_k127_292400_1 glutamine synthetase K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 620.0
LYD3_k127_292400_2 Catalyzes the conversion of dihydroorotate to orotate with NAD( ) as electron acceptor K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 362.0
LYD3_k127_292400_3 Belongs to the phosphatidylserine decarboxylase family K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000003292 239.0
LYD3_k127_292400_4 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.00000000000000000000000000000000000000000000000000000000001568 216.0
LYD3_k127_292400_5 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000003165 181.0
LYD3_k127_292400_6 - - - - 0.0000000000000000000000000000000000000000001728 169.0
LYD3_k127_292400_7 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000008156 155.0
LYD3_k127_292400_8 zinc ion binding K00859,K09862 GO:0003674,GO:0004857,GO:0005488,GO:0008150,GO:0008270,GO:0008657,GO:0010911,GO:0030234,GO:0032780,GO:0042030,GO:0043086,GO:0043167,GO:0043169,GO:0043462,GO:0044092,GO:0046872,GO:0046914,GO:0050790,GO:0051336,GO:0051346,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0072586,GO:0098772,GO:2000371,GO:2000372 2.7.1.24 0.00000000007634 64.0
LYD3_k127_2924251_0 Protein of unknown function DUF262 - - - 0.0000000000000000000000000000000000000000000000000000000000000004147 229.0
LYD3_k127_2924251_1 FHA domain - - - 0.0000000000000000000000000000000000000000000000009432 200.0
LYD3_k127_2924251_2 - - - - 0.000000000000000000000000003574 129.0
LYD3_k127_2924251_3 Vault protein inter-alpha-trypsin domain - - - 0.0000007237 63.0
LYD3_k127_2941383_0 PIN domain K07175 - - 2.942e-202 640.0
LYD3_k127_2941383_1 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family K08137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 530.0
LYD3_k127_2941383_2 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000001278 250.0
LYD3_k127_2941383_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000007256 195.0
LYD3_k127_2941383_4 Predicted permease - - - 0.000000000000000000000000000001279 138.0
LYD3_k127_294219_0 Glycosyl hydrolases family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000001839 212.0
LYD3_k127_2944384_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 609.0
LYD3_k127_2944384_1 PFAM membrane bound O-acyl transferase MBOAT K19294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004402 451.0
LYD3_k127_2944384_2 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 413.0
LYD3_k127_2944384_3 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 312.0
LYD3_k127_2944384_4 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000004577 149.0
LYD3_k127_2944384_5 SGNH hydrolase-like domain, acetyltransferase AlgX - - - 0.0000000000000000000000000000000003837 145.0
LYD3_k127_2944384_6 Phosphopantetheine attachment site K02078 - - 0.000000000000004375 82.0
LYD3_k127_2944384_7 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.000134 44.0
LYD3_k127_2948705_0 Stage II sporulation protein M - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 332.0
LYD3_k127_2948705_1 RDD family - - - 0.0000000000000000000000000000000000000000000005039 173.0
LYD3_k127_2948705_2 - - - - 0.00000000000000000000000000000000000000001896 168.0
LYD3_k127_2948705_3 Domain of unknown function (DUF4350) - - - 0.000000000000000000000000554 119.0
LYD3_k127_2953857_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 436.0
LYD3_k127_2953857_1 Putative metal-binding motif - - - 0.0000009465 58.0
LYD3_k127_2960564_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 1e-321 992.0
LYD3_k127_2960564_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000005408 264.0
LYD3_k127_2960564_2 Belongs to the UPF0235 family K09131 - - 0.00000000000000000001543 94.0
LYD3_k127_2960564_3 haloacid dehalogenase-like hydrolase - - - 0.0000009973 51.0
LYD3_k127_2989484_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 7.626e-223 711.0
LYD3_k127_2989484_1 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.00000000000000000000000000000000000000273 156.0
LYD3_k127_2989484_2 Beta propeller domain - - - 0.00000000000000000000003959 117.0
LYD3_k127_2989484_3 - - - - 0.0000000000000000003017 100.0
LYD3_k127_2989484_4 GHMP kinases N terminal domain K00938 - 2.7.4.2 0.00000000000000002336 96.0
LYD3_k127_2989484_5 Heparinase II/III-like protein - - - 0.00000000000004646 80.0
LYD3_k127_2992695_0 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 341.0
LYD3_k127_3000445_0 Belongs to the glycosyl hydrolase 43 family K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009695 564.0
LYD3_k127_3000445_1 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002184 288.0
LYD3_k127_3000445_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000001914 153.0
LYD3_k127_3000445_3 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000005881 138.0
LYD3_k127_3005401_0 Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000003297 237.0
LYD3_k127_3005401_1 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.0000000000000000000000000000000000000000000001118 181.0
LYD3_k127_3005401_2 Pectate lyase K01728 - 4.2.2.2 0.0000000000000008549 86.0
LYD3_k127_300983_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 4.051e-279 880.0
LYD3_k127_300983_1 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 599.0
LYD3_k127_300983_2 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009471 367.0
LYD3_k127_300983_3 ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000009085 223.0
LYD3_k127_3011338_0 Peptidase S9, prolyl oligopeptidase active site domain protein K01322 - 3.4.21.26 8.333e-231 733.0
LYD3_k127_3011338_1 POT family K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 440.0
LYD3_k127_3011338_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004221 400.0
LYD3_k127_3011338_3 Cys Met metabolism K01739,K01758 - 2.5.1.48,4.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000005453 251.0
LYD3_k127_3011338_4 - K08223 - - 0.00000000000000000000000000002467 131.0
LYD3_k127_3011338_5 - - - - 0.000000000000000000000006445 104.0
LYD3_k127_3011338_6 Belongs to the xylose isomerase family K01805 GO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009045,GO:0009056,GO:0016052,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019323,GO:0042732,GO:0042843,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575 5.3.1.5 0.0000000000000005767 78.0
LYD3_k127_3021511_0 Glycosyl transferases group 1 K16703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 432.0
LYD3_k127_3021511_1 Bacterial sugar transferase K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 411.0
LYD3_k127_3021511_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000000000000001035 224.0
LYD3_k127_3021511_3 4'-phosphopantetheinyl transferase superfamily - - - 0.000000000000000000000000000000001192 143.0
LYD3_k127_3021511_4 involved in transcriptional mechanism. thought to regulate the biosynthesis of the mycobacterial cell wall arabinan and resistance to ethambutol (Emb - - - 0.00000006491 61.0
LYD3_k127_3024646_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1026.0
LYD3_k127_3024646_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000002767 237.0
LYD3_k127_3024646_2 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000003044 220.0
LYD3_k127_3024646_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000005188 210.0
LYD3_k127_3027772_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1079.0
LYD3_k127_3027772_1 non-ribosomal peptide synthetase K02364 - 6.3.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 546.0
LYD3_k127_3027772_2 Right handed beta helix region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 369.0
LYD3_k127_3027772_3 Regulator of chromosome condensation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006682 317.0
LYD3_k127_3027772_4 RNA pseudouridylate synthase K06175 - 5.4.99.26 0.0000000000000000000000000000000000000000000000000000000000008555 238.0
LYD3_k127_3027772_5 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000006959 85.0
LYD3_k127_3027772_6 depolymerase - - - 0.00003974 51.0
LYD3_k127_3033816_0 pyruvate-flavodoxin oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 601.0
LYD3_k127_3033816_1 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009963 354.0
LYD3_k127_3033816_2 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000008605 200.0
LYD3_k127_3042529_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000006132 198.0
LYD3_k127_3042529_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000008477 180.0
LYD3_k127_3042529_2 Phage integrase, N-terminal SAM-like domain K03733,K04763 GO:0000150,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009314,GO:0009628,GO:0009987,GO:0015074,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0071139,GO:0071704,GO:0090304,GO:0140097,GO:1901360 - 0.000000000000000000000000001351 112.0
LYD3_k127_3042529_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000001716 55.0
LYD3_k127_305195_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 3.567e-222 697.0
LYD3_k127_305195_1 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 4.083e-219 695.0
LYD3_k127_305195_2 ABC-type multidrug transport system ATPase and permease K06147 - - 4.725e-196 628.0
LYD3_k127_305195_3 PFAM regulatory protein TetR - - - 0.000000000000000000000000003002 118.0
LYD3_k127_305195_4 PFAM PEGA domain - - - 0.000003251 53.0
LYD3_k127_306469_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 4.562e-201 639.0
LYD3_k127_306469_1 Glycosyl transferase family 21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007815 561.0
LYD3_k127_306469_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000002974 113.0
LYD3_k127_306567_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 584.0
LYD3_k127_306567_1 Ferrous iron transport protein B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 542.0
LYD3_k127_306567_2 Beta propeller domain - - - 0.0000000000000000000000000000000000000005213 173.0
LYD3_k127_3068698_0 AAA ATPase domain - - - 6.038e-311 1009.0
LYD3_k127_3068698_1 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 443.0
LYD3_k127_3068698_2 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000001043 188.0
LYD3_k127_3075950_0 ABC transporter K06020 - 3.6.3.25 2.275e-245 766.0
LYD3_k127_3075950_1 - - - - 0.000000000002171 74.0
LYD3_k127_3081225_0 ATP-binding region ATPase domain protein - - - 0.0 1521.0
LYD3_k127_3082134_0 cellulose 1,4-beta-cellobiosidase activity - - - 0.000000001501 65.0
LYD3_k127_3090267_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 1.276e-196 634.0
LYD3_k127_3090267_1 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000003597 196.0
LYD3_k127_3090267_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000001112 152.0
LYD3_k127_3090267_3 proteolysis K19225 - 3.4.21.105 0.00000000000000000000000000000002268 139.0
LYD3_k127_3091745_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 454.0
LYD3_k127_3091745_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000001446 217.0
LYD3_k127_3094085_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 400.0
LYD3_k127_3094085_1 Gp5 C-terminal repeat (3 copies) K11904 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005625 362.0
LYD3_k127_3094085_2 cellulose binding K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000008962 224.0
LYD3_k127_3094085_3 Cysteine-rich secretory protein family K13449 - - 0.0000000000000000004771 99.0
LYD3_k127_3094085_4 Homologues of snake disintegrins - - - 0.00000000000000192 92.0
LYD3_k127_3094085_5 Rhs Element Vgr Protein K11904 - - 0.0000001059 57.0
LYD3_k127_3099139_0 Domain of unknown function (DUF4215) - - - 5.306e-203 664.0
LYD3_k127_3099139_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 425.0
LYD3_k127_3099139_2 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005682 288.0
LYD3_k127_3099139_3 - - - - 0.000000000000000000000000000000000478 143.0
LYD3_k127_3101198_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016874,GO:0016886,GO:0030312,GO:0033554,GO:0034641,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 370.0
LYD3_k127_3101198_1 Transcriptional regulator, CarD family K07736 - - 0.00000000000000000000000000000000000000000000000000003427 192.0
LYD3_k127_3101198_2 Tetratricopeptide TPR_2 repeat protein - - - 0.00000008224 64.0
LYD3_k127_3105974_0 Pfam:HxxPF_rpt - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 529.0
LYD3_k127_3105974_1 alpha-L-arabinofuranosidase domain protein K01209 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 320.0
LYD3_k127_3105974_2 - - - - 0.000000000000000000000000000000000000000000000000000601 201.0
LYD3_k127_3105974_3 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000000000007464 112.0
LYD3_k127_3105974_4 TIGRFAM Polyketide-type polyunsaturated fatty acid synthase, PfaA - - - 0.0000004058 55.0
LYD3_k127_3120042_0 endonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005566 280.0
LYD3_k127_3120042_1 6-phosphogluconolactonase activity - - - 0.0000000001483 63.0
LYD3_k127_3123031_0 endonuclease activity - - - 0.000000000000000000001809 97.0
LYD3_k127_3123031_1 HNH nucleases - - - 0.000000005864 62.0
LYD3_k127_3131761_0 - - - - 0.00000000000000000002575 94.0
LYD3_k127_315101_0 iron ion homeostasis - - - 0.00000000000000000000000000000000000000000000000000000001391 218.0
LYD3_k127_315101_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000007321 135.0
LYD3_k127_315101_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.0000000000000000000002689 98.0
LYD3_k127_315101_4 Tetratricopeptide repeat - - - 0.0000000002854 70.0
LYD3_k127_3156638_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 518.0
LYD3_k127_3156638_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 308.0
LYD3_k127_3156638_2 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003413 285.0
LYD3_k127_3158307_0 PFAM Acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 474.0
LYD3_k127_3158307_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 360.0
LYD3_k127_3158307_2 serine threonine protein kinase K08282,K08884,K11916,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000009636 218.0
LYD3_k127_3158307_3 OmpA family - - - 0.0000000000000000000000000000000000000000000005699 178.0
LYD3_k127_3158307_4 twitching motility protein K02669 - - 0.00000000000000000000000000000000000000000009892 164.0
LYD3_k127_3158307_5 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000001781 158.0
LYD3_k127_3158307_6 PLD-like domain - - - 0.00000000000000000003539 106.0
LYD3_k127_3171608_0 Glycosyl hydrolase family 59 - - - 1.524e-277 860.0
LYD3_k127_3171608_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 503.0
LYD3_k127_3171608_2 Pyruvate phosphate dikinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005255 256.0
LYD3_k127_3171608_3 S-layer homology domain - - - 0.00000000000000000000000000007504 116.0
LYD3_k127_3171608_4 Ricin-type beta-trefoil - - - 0.0000000000009939 70.0
LYD3_k127_3176202_0 ABC transporter K03701 - - 6.353e-235 744.0
LYD3_k127_3181759_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007057 582.0
LYD3_k127_3181759_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000006816 232.0
LYD3_k127_3181759_2 Cytochrome C oxidase, cbb3-type, subunit III K12263 - - 0.0000003738 56.0
LYD3_k127_3182438_0 cell adhesion involved in biofilm formation - - - 0.000000000003664 80.0
LYD3_k127_3182438_1 Tetratricopeptide repeat - - - 0.00001469 56.0
LYD3_k127_3187029_0 AAA ATPase domain - - - 2.145e-199 669.0
LYD3_k127_3187029_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 465.0
LYD3_k127_3187029_2 Calcineurin-like phosphoesterase K07098 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 361.0
LYD3_k127_3187029_3 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004471 355.0
LYD3_k127_3187029_4 (EAL) domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 321.0
LYD3_k127_3187029_5 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009802 314.0
LYD3_k127_3187029_6 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004572 292.0
LYD3_k127_3187029_7 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000001778 226.0
LYD3_k127_3187029_8 Methionine biosynthesis protein MetW - - - 0.0000000000000000000000000000000000001994 154.0
LYD3_k127_3187029_9 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000003737 141.0
LYD3_k127_3199040_0 phospholipase Carboxylesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 383.0
LYD3_k127_3199040_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 342.0
LYD3_k127_3199040_2 response regulator, receiver - - - 0.0000000000000000000000000001187 126.0
LYD3_k127_3217297_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007161 334.0
LYD3_k127_3217297_1 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003095 305.0
LYD3_k127_3217297_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000000000002329 211.0
LYD3_k127_3229971_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002691 468.0
LYD3_k127_3229971_1 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009788 340.0
LYD3_k127_3229971_2 -O-antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009646 258.0
LYD3_k127_3229971_3 peptidase - - - 0.000000000000000000000000000001307 124.0
LYD3_k127_3230687_0 Heat shock 70 kDa protein K04043 - - 1.325e-280 875.0
LYD3_k127_3230687_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 462.0
LYD3_k127_3230687_2 mannose-6-phosphate isomerase, class I K01809 - 5.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000001548 242.0
LYD3_k127_3230687_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000207 230.0
LYD3_k127_3230687_4 - - - - 0.00000000000000000004658 100.0
LYD3_k127_3230687_5 Forkhead associated domain - - - 0.0000000000000000001161 100.0
LYD3_k127_3240986_0 SMART Elongator protein 3 MiaB NifB - - - 7.847e-269 855.0
LYD3_k127_3240986_1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000008699 260.0
LYD3_k127_3240986_2 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000001737 225.0
LYD3_k127_3240986_3 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000609 184.0
LYD3_k127_3240986_4 zinc-ribbon domain - - - 0.000000000009488 78.0
LYD3_k127_3250781_1 Beta-xylanase K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000193 361.0
LYD3_k127_3251711_0 aconitate hydratase K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000004317 212.0
LYD3_k127_3255407_0 Membrane protein, TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 378.0
LYD3_k127_3255407_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000008751 214.0
LYD3_k127_3255407_2 Transcriptional regulator K03717 - - 0.0000000000000000000000000000000135 132.0
LYD3_k127_3255407_3 - - - - 0.00000000000000000000000000003869 128.0
LYD3_k127_3255407_4 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.00000000000001501 79.0
LYD3_k127_3265083_0 PFAM ABC transporter K01990,K01992,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 398.0
LYD3_k127_3265083_1 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000883 400.0
LYD3_k127_3265083_2 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004824 377.0
LYD3_k127_3265083_3 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 370.0
LYD3_k127_3265083_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003804 309.0
LYD3_k127_3265083_5 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00000000000006342 85.0
LYD3_k127_3265083_6 PFAM secretion protein HlyD family protein K01993 - - 0.00001965 48.0
LYD3_k127_3276031_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 9.208e-277 891.0
LYD3_k127_3276031_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 584.0
LYD3_k127_3276031_10 Putative zinc-finger - - - 0.0000001694 56.0
LYD3_k127_3276031_11 serine-type endopeptidase activity K07261 - - 0.0000002049 61.0
LYD3_k127_3276031_12 IPT/TIG domain - - - 0.000002364 59.0
LYD3_k127_3276031_2 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 298.0
LYD3_k127_3276031_3 FHA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006055 259.0
LYD3_k127_3276031_4 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000000000000000000000000000000000000000711 171.0
LYD3_k127_3276031_5 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.00000000000000000000000000000000001137 150.0
LYD3_k127_3276031_7 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000004616 99.0
LYD3_k127_3276031_8 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000009889 90.0
LYD3_k127_3276031_9 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006457,GO:0006458,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0022607,GO:0030288,GO:0030313,GO:0031647,GO:0031975,GO:0033218,GO:0036211,GO:0042277,GO:0042597,GO:0043163,GO:0043165,GO:0043170,GO:0043412,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0044764,GO:0045229,GO:0050821,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0060274,GO:0061024,GO:0061077,GO:0065007,GO:0065008,GO:0071704,GO:0071709,GO:0071840,GO:0140096,GO:1901564 5.2.1.8 0.000000000000002271 88.0
LYD3_k127_3301568_0 - - - - 0.00000000000000000000000000000000000002159 150.0
LYD3_k127_3301568_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.000007481 56.0
LYD3_k127_330478_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 384.0
LYD3_k127_3304934_0 heme binding - - - 0.00001515 59.0
LYD3_k127_3310808_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 2.113e-223 700.0
LYD3_k127_3310808_1 BNR repeat-containing family member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 332.0
LYD3_k127_3310808_2 methyltransferase K00563 - 2.1.1.187 0.00000000000000000000000000000000000000000000000000000000000000000000000000001507 286.0
LYD3_k127_3310808_3 heat shock protein 70 K04043 - - 0.0000000000000000000000000000000000000000000001569 172.0
LYD3_k127_3310808_4 - - - - 0.0004688 51.0
LYD3_k127_3319874_0 TIGRFAM glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002356 282.0
LYD3_k127_3319874_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000001726 169.0
LYD3_k127_3319874_2 formate C-acetyltransferase glycine radical - - - 0.0000000000000000000000000000000009572 133.0
LYD3_k127_3322147_0 Organic Anion Transporter Polypeptide (OATP) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007921 320.0
LYD3_k127_3322147_1 Anthranilate synthase component I K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000004632 233.0
LYD3_k127_3322147_2 3'(2'),5'-bisphosphate nucleotidase activity K01082 - 3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000001745 239.0
LYD3_k127_3322147_3 - - - - 0.00000000000000000000000000000241 126.0
LYD3_k127_3325855_0 Carbamoyltransferase C-terminus K00612 - - 6.685e-258 810.0
LYD3_k127_3325855_1 lipolytic protein G-D-S-L family - - - 0.000000000000000003486 97.0
LYD3_k127_3325855_2 - - - - 0.000000000001163 69.0
LYD3_k127_3325855_3 - - - - 0.0000029 55.0
LYD3_k127_3328729_0 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000004564 158.0
LYD3_k127_3328729_1 General secretion pathway protein C K02452 - - 0.000000000000004773 83.0
LYD3_k127_3329776_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 509.0
LYD3_k127_3329776_1 beta-galactosidase activity K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000001056 272.0
LYD3_k127_3341005_0 endonuclease activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002112 288.0
LYD3_k127_3341005_1 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000007131 166.0
LYD3_k127_3341005_3 Protein of unknown function (DUF5131) - - - 0.0000000002041 70.0
LYD3_k127_3342801_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 413.0
LYD3_k127_3342801_1 Nucleotidyl transferase K00966,K16881 - 2.7.7.13,5.4.2.8 0.000000000000000000000000000000000000000000000000000000003617 214.0
LYD3_k127_3342801_2 serine threonine protein kinase K08884,K12132 GO:0000270,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0010698,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0030145,GO:0030203,GO:0030234,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032091,GO:0034645,GO:0036211,GO:0040007,GO:0042304,GO:0042546,GO:0042802,GO:0043085,GO:0043086,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043388,GO:0043393,GO:0043412,GO:0044036,GO:0044038,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046872,GO:0046890,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051098,GO:0051099,GO:0051100,GO:0051101,GO:0051128,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0075136,GO:0080090,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.11.1 0.000000000000000008761 92.0
LYD3_k127_334500_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 1.646e-206 656.0
LYD3_k127_334500_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000005334 252.0
LYD3_k127_334500_2 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000001485 190.0
LYD3_k127_334500_3 DNA mismatch repair protein MutT K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000001077 168.0
LYD3_k127_334500_4 Protein of unknown function (DUF503) K09764 - - 0.0000000000000005724 89.0
LYD3_k127_334500_5 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000001183 70.0
LYD3_k127_3345112_0 Domain of unknown function (DUF3488) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005607 346.0
LYD3_k127_3345112_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 344.0
LYD3_k127_3345112_10 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00007547 49.0
LYD3_k127_3345112_2 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 316.0
LYD3_k127_3345112_3 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 304.0
LYD3_k127_3345112_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000005297 233.0
LYD3_k127_3345112_5 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000007099 235.0
LYD3_k127_3345112_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000006648 218.0
LYD3_k127_3345112_7 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000001718 176.0
LYD3_k127_3345112_8 - - - - 0.0000000000000000000000000000000000002192 162.0
LYD3_k127_3345112_9 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000001387 113.0
LYD3_k127_3348310_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006403 284.0
LYD3_k127_3348310_1 Rod shape-determining protein K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004074 239.0
LYD3_k127_3348310_2 secreted protein - - - 0.00000000000000000000000000000000000000000000000000000000000005443 227.0
LYD3_k127_3348310_3 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000000000000001865 237.0
LYD3_k127_3348310_4 peptidyl-prolyl cis-trans isomerase activity K03770 - 5.2.1.8 0.00000000000000000000000000000000003573 153.0
LYD3_k127_3348310_5 Tetratricopeptide repeat - - - 0.0000004505 65.0
LYD3_k127_3348310_6 Belongs to the eIF-2B alpha beta delta subunits family K03680 GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0019899,GO:0030234,GO:0031323,GO:0031326,GO:0032045,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112 - 0.0002976 54.0
LYD3_k127_3349284_0 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004348 249.0
LYD3_k127_3349284_1 Family membership K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000338 194.0
LYD3_k127_3349284_2 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000004888 143.0
LYD3_k127_3349284_3 N6-adenine-specific DNA methylase K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000004696 119.0
LYD3_k127_3349284_4 transcriptional regulator K12266 - - 0.00000002807 57.0
LYD3_k127_3354227_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007811 280.0
LYD3_k127_3354227_1 Phosphoribulokinase / Uridine kinase family K00876 - 2.7.1.48 0.000000000000000000000000000000009727 132.0
LYD3_k127_3354227_2 Domain of unknown function (DUF4388) - - - 0.00000000000000003777 92.0
LYD3_k127_3366517_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 427.0
LYD3_k127_3366517_1 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 421.0
LYD3_k127_3366517_2 - - - - 0.00000000000000000000007169 114.0
LYD3_k127_3366517_3 Domain of unknown function (DUF4350) - - - 0.000000000001084 72.0
LYD3_k127_3378009_0 Belongs to the WrbA family K03809 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 321.0
LYD3_k127_3378009_1 Ferritin Dps family protein K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000004144 237.0
LYD3_k127_3378009_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000147 187.0
LYD3_k127_3378464_0 Glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 1.61e-220 697.0
LYD3_k127_3378464_1 Enoyl-(Acyl carrier protein) reductase K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009604 403.0
LYD3_k127_3378464_2 PFAM Prephenate dehydratase K04518 - 4.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000448 264.0
LYD3_k127_3378464_3 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000008597 234.0
LYD3_k127_3380794_0 PFAM Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 371.0
LYD3_k127_3380794_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 374.0
LYD3_k127_3380794_10 Belongs to the peptidase S26 family - - - 0.0000000004579 59.0
LYD3_k127_3380794_11 Tetratricopeptide repeat - - - 0.000002289 61.0
LYD3_k127_3380794_12 - - - - 0.0001086 45.0
LYD3_k127_3380794_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.00000000000000000000000000000000000000000000000000006163 192.0
LYD3_k127_3380794_3 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000000000000002605 153.0
LYD3_k127_3380794_4 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system - - - 0.00000000000000000000000000001911 119.0
LYD3_k127_3380794_5 SPTR CopG domain protein DNA-binding domain protein - - - 0.00000000000000000000000000007225 120.0
LYD3_k127_3380794_6 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000006407 107.0
LYD3_k127_3380794_8 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000001708 70.0
LYD3_k127_3380794_9 Polyketide cyclase / dehydrase and lipid transport - - - 0.0000000001282 70.0
LYD3_k127_3381626_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 2.29e-270 862.0
LYD3_k127_3381626_1 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 603.0
LYD3_k127_3381626_2 Belongs to the glycosyl hydrolase 8 (cellulase D) family K15531 - 3.2.1.156 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 409.0
LYD3_k127_3381626_3 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008096 316.0
LYD3_k127_3381626_4 Alpha-l-fucosidase K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000007933 281.0
LYD3_k127_3381626_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000003116 174.0
LYD3_k127_3381626_6 Alpha-L-fucosidase 1 K01206 GO:0003674,GO:0003824,GO:0004553,GO:0004560,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006516,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0015928,GO:0016787,GO:0016798,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.2.1.51 0.00000000002599 66.0
LYD3_k127_3381626_7 - - - - 0.000000515 61.0
LYD3_k127_3388725_0 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000000884 217.0
LYD3_k127_3388725_1 - - - - 0.000000000000000000000000000000000000000001345 162.0
LYD3_k127_3388725_2 - - - - 0.00000000000001359 87.0
LYD3_k127_3388725_3 pilus organization K07346 - - 0.000000000000224 83.0
LYD3_k127_3388725_4 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.00000002535 62.0
LYD3_k127_3397852_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 9.807e-223 709.0
LYD3_k127_3397852_1 CBD_II - - - 4.489e-194 625.0
LYD3_k127_3397852_2 ATPase activity K01990,K09695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 329.0
LYD3_k127_3397852_3 Transport permease protein K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007774 282.0
LYD3_k127_3397852_4 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000003717 171.0
LYD3_k127_3397852_5 Putative regulatory protein - - - 0.0000000000000004994 79.0
LYD3_k127_3397852_6 Belongs to the UbiD family K03182 - 4.1.1.98 0.0000000000000009367 78.0
LYD3_k127_3397852_7 Putative restriction endonuclease - - - 0.0000000001942 63.0
LYD3_k127_339787_0 type IV pilus assembly PilZ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 452.0
LYD3_k127_339787_1 Domain of unknown function (DUF4143) - - - 0.0000000000000000004688 92.0
LYD3_k127_339787_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000009827 78.0
LYD3_k127_339787_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0007176 49.0
LYD3_k127_3411936_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000242 181.0
LYD3_k127_3414355_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007433 467.0
LYD3_k127_3414355_2 Belongs to the glycosyl hydrolase 13 family K01214,K02438 - 3.2.1.196,3.2.1.68 0.0000000000001156 83.0
LYD3_k127_3414355_3 COG1253 Hemolysins and related proteins containing CBS domains K03699 - - 0.000000006102 62.0
LYD3_k127_3420757_0 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000008042 207.0
LYD3_k127_3420757_1 pathogenesis - - - 0.000000000000000000000000000000000000000006908 176.0
LYD3_k127_3420757_2 PFAM Smr protein MutS2 - - - 0.000000000000000000000000000001607 131.0
LYD3_k127_3431539_0 PFAM heat shock protein DnaJ domain protein - - - 0.0000000000000000000000000000000004915 141.0
LYD3_k127_3431539_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000002893 63.0
LYD3_k127_3431991_0 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002699 327.0
LYD3_k127_3431991_1 Bacterial sugar transferase K03606 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000755 267.0
LYD3_k127_3431991_2 membrane organization K07277 - - 0.000000000000009275 83.0
LYD3_k127_344422_0 depolymerase K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 388.0
LYD3_k127_344422_1 TonB-dependent Receptor Plug Domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 318.0
LYD3_k127_344422_2 exo-alpha-(2->6)-sialidase activity K00368,K07004 - 1.7.2.1 0.0002147 54.0
LYD3_k127_3446657_0 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007704 597.0
LYD3_k127_3446657_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 367.0
LYD3_k127_3446657_2 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 353.0
LYD3_k127_3447734_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 1.461e-216 679.0
LYD3_k127_3447734_1 Biotin-lipoyl like K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 446.0
LYD3_k127_3447734_2 ABC-type sugar transport system periplasmic component K17205 - - 0.0000000004351 71.0
LYD3_k127_3453885_0 lysine 2,3-aminomutase K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007207 588.0
LYD3_k127_3453885_1 ATP-dependent helicase HrpB K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009425 485.0
LYD3_k127_3453885_2 Protein of unknown function (DUF1343) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 459.0
LYD3_k127_3453885_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 402.0
LYD3_k127_3453885_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.7.18 0.00000000000000000000000000000000000000000000000001833 185.0
LYD3_k127_3453885_5 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000384 157.0
LYD3_k127_3453885_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000008764 160.0
LYD3_k127_3454040_0 hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004191 499.0
LYD3_k127_3454040_1 Archaea bacterial proteins of unknown function K06921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000645 390.0
LYD3_k127_3454040_2 YCII-related domain K09780 - - 0.0000000000000000000001663 103.0
LYD3_k127_3454040_3 hydrolase activity, hydrolyzing O-glycosyl compounds K01176,K21575 - 3.2.1.1,3.2.1.135 0.0000000000000000000008817 98.0
LYD3_k127_3454040_4 Belongs to the glycosyl hydrolase 30 family K01179,K01181,K01218,K19668 - 3.2.1.4,3.2.1.78,3.2.1.8,3.2.1.91 0.000000002039 69.0
LYD3_k127_3459136_0 Domain of unknown function (DUF5110) K01811 - 3.2.1.177 4.175e-291 908.0
LYD3_k127_3464651_0 PFAM Glycosyl transferase family 2 K20534 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 328.0
LYD3_k127_3464651_1 COG0618 Exopolyphosphatase-related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 288.0
LYD3_k127_3464651_2 Predicted membrane protein (DUF2079) K07778 - 2.7.13.3 0.0000000000000000000000000000000000000000004016 180.0
LYD3_k127_3464651_3 Predicted membrane protein (DUF2079) - - - 0.0000000000000000000000001558 124.0
LYD3_k127_3464651_4 F5/8 type C domain - - - 0.0004528 48.0
LYD3_k127_3467706_0 protein ubiquitination - - - 0.00000000000001751 86.0
LYD3_k127_3467706_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000003603 59.0
LYD3_k127_3470611_0 Glycosyl hydrolases family 6 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006724 416.0
LYD3_k127_3470611_1 Glycosyl hydrolases family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001739 259.0
LYD3_k127_3470611_2 two component, sigma54 specific, transcriptional regulator, Fis family K07714,K07715 - - 0.00000000000000000000000000000000000000000000000000000000000001876 226.0
LYD3_k127_3470611_3 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000003324 244.0
LYD3_k127_3471067_0 DbpA RNA binding domain K03732,K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008473 381.0
LYD3_k127_3471067_1 tRNA nucleotidyltransferase domain 2 putative K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007122 314.0
LYD3_k127_3471067_2 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 319.0
LYD3_k127_3471067_3 Electron transfer flavoprotein domain K03521 - - 0.00004358 55.0
LYD3_k127_3475967_1 oxidoreductase activity K07114 - - 0.000000000000000000000000147 117.0
LYD3_k127_3475967_2 Si dkey-21a6.5 - - - 0.000394 51.0
LYD3_k127_3475967_3 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.0009014 46.0
LYD3_k127_3501510_0 peptidase U62 modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 526.0
LYD3_k127_3501510_1 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000009672 195.0
LYD3_k127_3505531_0 Pfam:KaiC K08482 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 402.0
LYD3_k127_3505531_1 KaiB K08481 - - 0.0000000000000000000000000000001092 136.0
LYD3_k127_3505531_2 KaiB K08481 - - 0.000000000000000000000000000003549 122.0
LYD3_k127_3505531_3 domain, Protein - - - 0.00000000000000000000008674 116.0
LYD3_k127_3505531_4 COG0642 Signal transduction histidine kinase - - - 0.0000000000000000000003252 111.0
LYD3_k127_3506455_0 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000005506 175.0
LYD3_k127_3506455_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000009177 153.0
LYD3_k127_3506455_2 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000009908 141.0
LYD3_k127_3506455_3 FR47-like protein K03789 - 2.3.1.128 0.000000000000000000000000000000002043 134.0
LYD3_k127_3507442_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 463.0
LYD3_k127_3507442_1 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.000000000000000000000000000000000000000006767 159.0
LYD3_k127_3507442_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000484 121.0
LYD3_k127_3507442_3 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.000000000000000000008628 98.0
LYD3_k127_3518716_0 PFAM major facilitator superfamily MFS_1 K02429 - - 2.447e-225 707.0
LYD3_k127_3518716_1 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000174 282.0
LYD3_k127_3518716_2 secreted protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002683 232.0
LYD3_k127_3518716_3 DUF3160 - - - 0.0000000000000000004936 93.0
LYD3_k127_3518716_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000002914 78.0
LYD3_k127_3518716_5 Bacterial membrane protein YfhO - - - 0.00000000006798 73.0
LYD3_k127_3518716_6 - - - - 0.00000000007273 68.0
LYD3_k127_3529903_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000007103 234.0
LYD3_k127_3529903_1 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000001421 133.0
LYD3_k127_3529903_2 Psort location CytoplasmicMembrane, score - - - 0.0000000001767 73.0
LYD3_k127_354886_0 FAD dependent oxidoreductase K07137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 428.0
LYD3_k127_354886_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 293.0
LYD3_k127_354886_2 Phospholipase D. Active site motifs. K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003322 258.0
LYD3_k127_354886_3 Ribose/Galactose Isomerase K01808,K01819 - 5.3.1.26,5.3.1.6 0.0000000000000000000000000000001097 141.0
LYD3_k127_354886_4 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000001159 101.0
LYD3_k127_355720_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.507e-270 853.0
LYD3_k127_355720_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 533.0
LYD3_k127_355720_2 SMART heat shock protein DnaJ domain protein K03686,K05516 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0010468,GO:0016020,GO:0019222,GO:0030312,GO:0040007,GO:0043388,GO:0044093,GO:0044464,GO:0050789,GO:0051098,GO:0051099,GO:0051101,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:2000677,GO:2000679 - 0.000000000000000000000000000000000000000000000000000000000000000009093 235.0
LYD3_k127_355720_3 TPR repeat - - - 0.00005974 55.0
LYD3_k127_3560523_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000001472 96.0
LYD3_k127_3560523_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000004365 66.0
LYD3_k127_3568556_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 479.0
LYD3_k127_3568556_1 cytochrome c biogenesis protein transmembrane region K06196 - - 0.00002828 54.0
LYD3_k127_3573046_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007376 487.0
LYD3_k127_3573046_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 324.0
LYD3_k127_3573046_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 307.0
LYD3_k127_3575587_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 512.0
LYD3_k127_3575587_1 Belongs to the GARS family K01945 - 6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 395.0
LYD3_k127_3575587_2 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000005705 258.0
LYD3_k127_3575587_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000003891 160.0
LYD3_k127_3575587_4 glycosyl transferase, family 39 K00728 - 2.4.1.109 0.00000000000000000000004554 112.0
LYD3_k127_3575587_5 GTPase inhibitor activity K13758 GO:0001750,GO:0003008,GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004857,GO:0005095,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005929,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007601,GO:0007602,GO:0008081,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009987,GO:0016020,GO:0016319,GO:0016787,GO:0016788,GO:0017016,GO:0017137,GO:0019899,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031253,GO:0031267,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0034260,GO:0042578,GO:0042622,GO:0042995,GO:0043005,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044441,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0047555,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051336,GO:0051346,GO:0051606,GO:0051716,GO:0060170,GO:0060322,GO:0060589,GO:0065007,GO:0065009,GO:0071944,GO:0097458,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0098772,GO:0120025,GO:0120038 - 0.0000991 54.0
LYD3_k127_3582635_0 PFAM HypF finger K04656 - - 1.975e-282 887.0
LYD3_k127_3582635_1 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.000000000000000009478 86.0
LYD3_k127_3590575_0 COG3509 Poly(3-hydroxybutyrate) depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000108 206.0
LYD3_k127_3600324_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 293.0
LYD3_k127_3600324_1 cytochrome c5 - - - 0.000000000000000000000000000000000000000000000000000007545 196.0
LYD3_k127_3600324_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.000000000000000000000000000000000000000000001281 182.0
LYD3_k127_3600324_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00330 - 1.6.5.3 0.0000000000000000000000000000000000000005337 151.0
LYD3_k127_3600324_4 Cytochrome c - - - 0.000000000002404 78.0
LYD3_k127_360459_0 ATPases associated with a variety of cellular activities K01990,K09689,K09691 - 3.6.3.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 329.0
LYD3_k127_360459_1 Dihydroorotate dehydrogenase K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000533 299.0
LYD3_k127_360459_2 Transport permease protein K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004217 290.0
LYD3_k127_360459_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000001246 128.0
LYD3_k127_360459_4 tRNA (guanine(37)-N(1))-methyltransferase activity - - - 0.000000000000000000003311 105.0
LYD3_k127_3626120_0 Phospholipase D Active site motif K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 370.0
LYD3_k127_3626120_1 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.00000000000000000000000000000000000000000000000000000000000007297 225.0
LYD3_k127_3626120_2 - - - - 0.0000000001068 69.0
LYD3_k127_3626120_3 - - - - 0.0000000001587 63.0
LYD3_k127_3626120_4 - - - - 0.00002915 54.0
LYD3_k127_3626721_0 Coagulation factor 5 8 type domain protein K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000002165 218.0
LYD3_k127_3626721_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000001334 132.0
LYD3_k127_3626721_2 FecR protein - - - 0.000000000000000000000000000001181 137.0
LYD3_k127_3626721_3 3-carboxymuconate cyclase K07404 - 3.1.1.31 0.0000000000000001488 93.0
LYD3_k127_3626721_4 domain, Protein - - - 0.00000000000004632 84.0
LYD3_k127_362887_0 major facilitator superfamily K08191 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 593.0
LYD3_k127_362887_1 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 574.0
LYD3_k127_3658799_0 response regulator K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 433.0
LYD3_k127_3658799_1 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 328.0
LYD3_k127_3658799_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352,K21307 - 1.8.5.5,1.8.5.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 340.0
LYD3_k127_3658799_3 Formate-dependent nitrite reductase, membrane component K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001614 288.0
LYD3_k127_3658799_4 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001661 250.0
LYD3_k127_3658799_5 LamB porin K02024 - - 0.000000000000000000000000000000000000000000000000000000000000000000004184 252.0
LYD3_k127_3658799_6 Phosphonate ABC transporter, periplasmic K02044 - - 0.0000000000000000000000000000000000000000000000000000000000004604 222.0
LYD3_k127_3658799_7 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000008569 188.0
LYD3_k127_3658799_8 Bacterial regulatory protein, arsR family - - - 0.0000000000000000000000005479 109.0
LYD3_k127_3658799_9 COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - GO:0003674,GO:0003700,GO:0004857,GO:0006355,GO:0008073,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010967,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033238,GO:0042979,GO:0043086,GO:0044092,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.0004353 44.0
LYD3_k127_3659849_0 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 327.0
LYD3_k127_3659849_1 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000000004237 223.0
LYD3_k127_3659849_2 Glycosyl transferase family group 2 - - - 0.000000000000000000000000000000000000000000000000002387 195.0
LYD3_k127_3659849_3 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000004567 141.0
LYD3_k127_3659849_4 Membrane-associated phospholipid phosphatase K19302 - 3.6.1.27 0.0000000000000000000000000000005166 130.0
LYD3_k127_3659849_5 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000001822 85.0
LYD3_k127_3659849_6 Belongs to the TPP enzyme family K00156,K00158 - 1.2.3.3,1.2.5.1 0.00007002 48.0
LYD3_k127_3673465_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004619 283.0
LYD3_k127_3673465_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000437 184.0
LYD3_k127_3682400_0 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000007983 194.0
LYD3_k127_3685199_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001671 261.0
LYD3_k127_3690499_0 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 428.0
LYD3_k127_3690499_1 probably responsible for the translocation of the substrate across the membrane K02037,K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 333.0
LYD3_k127_3690499_2 Binding-protein-dependent transport system inner membrane component K02037,K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 319.0
LYD3_k127_3690499_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 285.0
LYD3_k127_3690499_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000002796 255.0
LYD3_k127_3690499_5 PBP superfamily domain K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008023 255.0
LYD3_k127_3690499_6 Virulence factor BrkB - - - 0.000000000000000000000000000000000000000000000000000002627 209.0
LYD3_k127_3699557_0 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 2.32e-274 862.0
LYD3_k127_3699557_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 315.0
LYD3_k127_3699557_2 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005777 290.0
LYD3_k127_3699557_3 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000002963 222.0
LYD3_k127_3699557_4 metallopeptidase activity K06974 - - 0.000000000000000000000000000000000000003521 154.0
LYD3_k127_3699557_5 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000000034 116.0
LYD3_k127_3699557_7 Pentapeptide repeat protein - - - 0.00027 48.0
LYD3_k127_3700962_0 Alginate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 416.0
LYD3_k127_3700962_1 Esterase PHB depolymerase K03932 - - 0.00000000000000000000002387 102.0
LYD3_k127_3703318_0 PFAM nitrite and sulphite reductase 4Fe-4S K11180 - 1.8.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 520.0
LYD3_k127_3703318_1 TIGRFAM sulfite reductase, dissimilatory-type beta subunit K11181 - 1.8.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005727 497.0
LYD3_k127_3703318_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004402 276.0
LYD3_k127_371107_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000241 153.0
LYD3_k127_371107_2 Esterase PHB depolymerase K03932 - - 0.00001039 59.0
LYD3_k127_3711231_0 Transcriptional regulator - - - 1.787e-241 764.0
LYD3_k127_3711231_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 458.0
LYD3_k127_3711231_2 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 449.0
LYD3_k127_3711231_3 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000443 386.0
LYD3_k127_3711231_4 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 309.0
LYD3_k127_3711231_5 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003299 269.0
LYD3_k127_3711231_6 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000001288 232.0
LYD3_k127_3711231_7 Domain of unknown function (DUF1732) - - - 0.000000000000000000000000000000000000000000000683 178.0
LYD3_k127_3711231_8 Tetratricopeptide repeat - - - 0.00000000000000000000000000006958 127.0
LYD3_k127_3711231_9 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000001163 103.0
LYD3_k127_3714723_0 Tetratricopeptide repeats - - - 0.0 1155.0
LYD3_k127_3714723_1 Dehydrogenase E1 component K00161,K00166 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 349.0
LYD3_k127_3714723_2 Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 309.0
LYD3_k127_3714915_0 - - - - 0.0000000000000000000000000000000000006 158.0
LYD3_k127_3714915_1 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000001328 130.0
LYD3_k127_3714915_2 nuclease activity - - - 0.0000000000000000000005645 97.0
LYD3_k127_3714915_3 - - - - 0.00000000000001704 86.0
LYD3_k127_3715849_0 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000915 430.0
LYD3_k127_3715849_1 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000001871 216.0
LYD3_k127_3715849_2 Glycoprotease family K14742 - - 0.00000000000000000006682 101.0
LYD3_k127_3715849_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000001254 79.0
LYD3_k127_3721412_0 TIGRFAM type VI secretion ATPase, ClpV1 family K11907 - - 0.0 1358.0
LYD3_k127_3721412_1 type VI secretion protein K11900 - - 2.195e-259 805.0
LYD3_k127_3721412_10 synthase K00647 - 2.3.1.41 0.0000000000000000000000000000000001706 153.0
LYD3_k127_3721412_11 Domain of unknown function (DUF4150) - - - 0.0000000000000000000000000000000001919 153.0
LYD3_k127_3721412_12 This family consists of several bacterial proteins of K11903 - - 0.0000000000000000000000002327 111.0
LYD3_k127_3721412_13 Forkhead associated domain K11894,K11913 - - 0.00000000000000001864 87.0
LYD3_k127_3721412_14 Transcriptional regulator - - - 0.000001337 62.0
LYD3_k127_3721412_2 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 2.708e-235 743.0
LYD3_k127_3721412_3 type VI secretion protein K11904 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 445.0
LYD3_k127_3721412_4 Pfam:T6SS_VasB K11895 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 365.0
LYD3_k127_3721412_5 ImpE protein K11898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 308.0
LYD3_k127_3721412_6 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 285.0
LYD3_k127_3721412_7 ImpA, N-terminal, type VI secretion system K11902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008145 290.0
LYD3_k127_3721412_8 TIGRFAM Type VI secretion system, lysozyme-related K11897 - - 0.00000000000000000000000000000000000000000000000000000003685 204.0
LYD3_k127_3721412_9 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.00000000000000000000000000000000000009731 146.0
LYD3_k127_3736530_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009138 597.0
LYD3_k127_3736530_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009749 391.0
LYD3_k127_3736530_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 298.0
LYD3_k127_3736530_3 COG1045 Serine acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000001205 237.0
LYD3_k127_3736530_4 Smr protein MutS2 - - - 0.0000000000000005725 87.0
LYD3_k127_3741758_0 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000001562 239.0
LYD3_k127_3746350_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007689 494.0
LYD3_k127_3746350_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.00000000000000000000000001202 117.0
LYD3_k127_3746350_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000005058 106.0
LYD3_k127_3749483_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 452.0
LYD3_k127_3749483_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 426.0
LYD3_k127_3749483_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000312 283.0
LYD3_k127_3749483_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000001151 264.0
LYD3_k127_3749483_4 Fic/DOC family - - - 0.00000000000000000000000000000000000000000000000002183 189.0
LYD3_k127_3749483_5 negative regulation of transforming growth factor beta1 production K03068,K06261,K06593,K08867,K09187,K12488,K13738,K14972,K20050,K20371 GO:0000003,GO:0001654,GO:0001667,GO:0001745,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0017124,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030496,GO:0030707,GO:0030855,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032794,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0040011,GO:0043062,GO:0043063,GO:0044085,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0045171,GO:0045177,GO:0045179,GO:0045216,GO:0045807,GO:0048259,GO:0048260,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050839,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051302,GO:0051674,GO:0051704,GO:0051726,GO:0060429,GO:0060627,GO:0065007,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0090596,GO:0097435,GO:0098590,GO:0099568,GO:0099738 2.1.1.43,2.7.11.1 0.0000000000000000000000000000000008735 145.0
LYD3_k127_3749483_6 collagen metabolic process K08677 - - 0.00005288 55.0
LYD3_k127_3749483_7 Cell division protein FtsL - - - 0.000417 49.0
LYD3_k127_375092_0 Transcriptional regulator, LysR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001848 379.0
LYD3_k127_375092_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.000000000000000000000000000000000000000000000000000000002183 203.0
LYD3_k127_375092_2 Sigma-54 interaction domain K07714 - - 0.000000000000000000000000000000004387 133.0
LYD3_k127_375092_3 capsule polysaccharide biosynthetic process - - - 0.0000000000000000000000004845 121.0
LYD3_k127_3754388_0 RibD C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002825 318.0
LYD3_k127_3754388_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001181 278.0
LYD3_k127_3756116_0 Peptidase C14, caspase catalytic - - - 0.0000000000000000000000000000000000000000000000000000006203 215.0
LYD3_k127_3756116_2 AntiSigma factor - - - 0.00000002017 64.0
LYD3_k127_3761814_0 PFAM ATP phosphoribosyltransferase - - - 0.0000000000000000000000003675 121.0
LYD3_k127_3761814_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000008488 106.0
LYD3_k127_3761814_3 von Willebrand factor (vWF) type A domain - - - 0.0001766 55.0
LYD3_k127_3772674_0 Insertion element 4 transposase N-terminal - - - 0.00000000000000000000000000000000000000000000000001794 186.0
LYD3_k127_3772674_1 Domain of unknown function (DUF1330) - - - 0.00000000000000000000000000000000000000009487 153.0
LYD3_k127_3772674_2 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000001731 109.0
LYD3_k127_3772674_3 - - - - 0.000000000000000000001543 100.0
LYD3_k127_3772674_4 Protein of unknown function (DUF1697) - - - 0.000000000000001213 79.0
LYD3_k127_3772674_5 Homeodomain-like domain - - - 0.000000003651 59.0
LYD3_k127_3776157_0 GMC oxidoreductase K03333 - 1.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002438 545.0
LYD3_k127_3776157_1 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component K00380 - 1.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 302.0
LYD3_k127_3776157_2 Belongs to the aldehyde dehydrogenase family K00135,K22445 - 1.2.1.16,1.2.1.20,1.2.1.79,1.2.99.10 0.0000000000000000000000000000000006538 138.0
LYD3_k127_3780982_0 COG1668 ABC-type Na efflux pump, permease component K01992,K09696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001297 275.0
LYD3_k127_3780982_1 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007447 244.0
LYD3_k127_3780982_2 ABC transporter K01990,K09697 - 3.6.3.7 0.0000000000000000000000000000000000000000000000000000000000009495 224.0
LYD3_k127_3780982_3 Belongs to the bacterial histone-like protein family - - - 0.00000000000000000000000000000002434 130.0
LYD3_k127_3780982_4 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000619 122.0
LYD3_k127_378948_1 Protein of unknown function DUF86 K07075 - - 0.00004577 51.0
LYD3_k127_3801945_0 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 6.882e-224 719.0
LYD3_k127_3819264_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.564e-297 935.0
LYD3_k127_3822775_0 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008895 455.0
LYD3_k127_3822775_1 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 347.0
LYD3_k127_3822775_2 Polysaccharide deacetylase K14659,K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000000000000000000000004142 218.0
LYD3_k127_3822775_3 - - - - 0.0000000000000000000000000000000000002111 147.0
LYD3_k127_3828026_0 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 377.0
LYD3_k127_3828026_1 Domain of unknown function (DUF3520) K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 336.0
LYD3_k127_3828026_2 desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 323.0
LYD3_k127_3828026_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 298.0
LYD3_k127_3828026_4 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000009566 199.0
LYD3_k127_3828026_5 Anp1 - - - 0.00000000000000000000000000000000000000000003915 171.0
LYD3_k127_3828026_6 RNA recognition motif - - - 0.0000000000000000000000003417 107.0
LYD3_k127_3828026_7 Domain of unknown function (DUF4215) - - - 0.00000000000000000009938 105.0
LYD3_k127_3828026_8 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000001554 96.0
LYD3_k127_3828026_9 Propeptide_C25 - - - 0.0000000007384 72.0
LYD3_k127_3842413_0 Helix-hairpin-helix motif K02237 - - 0.00000000001699 72.0
LYD3_k127_3842413_1 - - - - 0.0001893 54.0
LYD3_k127_3842413_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0005067 45.0
LYD3_k127_3849695_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.0 1360.0
LYD3_k127_3874428_0 Evidence 5 No homology to any previously reported sequences K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008034 618.0
LYD3_k127_3874428_1 lytic transglycosylase activity - - - 0.00000000000000000000000000000000000000000000000000000000004049 212.0
LYD3_k127_3874428_2 Predicted membrane protein (DUF2079) K07778 - 2.7.13.3 0.0000000000000000000000000000000000000002251 171.0
LYD3_k127_3874428_4 - - - - 0.000000000000000000000000005885 120.0
LYD3_k127_3874428_5 Beta-L-arabinofuranosidase, GH127 - - - 0.0000000000000001066 92.0
LYD3_k127_3874428_6 - - - - 0.0001095 50.0
LYD3_k127_3886853_0 Exonuclease of the beta-lactamase fold involved in RNA processing K07577 - - 0.0000000000000000000000000000537 130.0
LYD3_k127_3886853_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116,K03117 - - 0.00000001497 65.0
LYD3_k127_3886853_2 Fructosamine kinase - - - 0.0001812 44.0
LYD3_k127_3890117_0 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003461 287.0
LYD3_k127_3890117_1 Domain of unknown function (DUF4215) - - - 0.0000000000000000000000000000000000000000000000000000000000000002686 230.0
LYD3_k127_3894850_0 Asp/Glu/Hydantoin racemase K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 405.0
LYD3_k127_3894850_1 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000003027 167.0
LYD3_k127_3894850_2 Glycosyltransferase like family 2 - - - 0.0000000000000000006141 96.0
LYD3_k127_3894850_3 - - - - 0.000002384 55.0
LYD3_k127_389502_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006202 357.0
LYD3_k127_389502_1 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000005116 199.0
LYD3_k127_389502_2 superoxide dismutase activity - - - 0.000000000000000000000000000000000007237 141.0
LYD3_k127_389502_3 PFAM Patatin K07001 - - 0.000000000000000000002045 100.0
LYD3_k127_389502_4 HEPN domain - - - 0.000000000002132 74.0
LYD3_k127_389502_5 Nitroreductase family - - - 0.00000001583 59.0
LYD3_k127_389502_6 nucleotidyltransferase activity K07061,K07075 - - 0.0000003984 57.0
LYD3_k127_3896519_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003752 322.0
LYD3_k127_3896519_1 CBD_II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002368 276.0
LYD3_k127_3896519_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001883 272.0
LYD3_k127_3900732_0 transporter K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002412 272.0
LYD3_k127_3900732_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004294 275.0
LYD3_k127_3900732_2 Domain of unknown function (DUF5011) - - - 0.0000000000000000000002584 114.0
LYD3_k127_3900732_3 regulator of chromosome condensation, RCC1 - - - 0.000000000000000000001012 113.0
LYD3_k127_3900732_4 ATP cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000001176 78.0
LYD3_k127_3900732_5 Amb_all K01728 - 4.2.2.2 0.00000003681 56.0
LYD3_k127_3900732_6 Tetratricopeptide repeat - - - 0.000629 51.0
LYD3_k127_3906183_0 PilZ domain - - - 0.0000000000000000000000000000000000000000000000000000000000145 212.0
LYD3_k127_3906183_1 Aminotransferase K00826 - 2.6.1.42 0.000000000000000000000314 107.0
LYD3_k127_3906183_2 Serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000002491 89.0
LYD3_k127_3913992_0 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000001822 171.0
LYD3_k127_3913992_1 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000001651 132.0
LYD3_k127_3913992_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000000000001377 114.0
LYD3_k127_3925584_0 PFAM Alpha beta hydrolase of - - - 0.0000000000000000000000001162 119.0
LYD3_k127_3925584_1 6-phosphogluconolactonase activity - - - 0.00000000000000000000000459 112.0
LYD3_k127_3935626_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K05587,K18331 - 1.12.1.3,1.6.5.3 8.676e-233 744.0
LYD3_k127_3935626_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K00436 - 1.12.1.2 1.421e-213 677.0
LYD3_k127_3935626_2 Coenzyme F420-reducing hydrogenase, gamma subunit K18007 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000004359 258.0
LYD3_k127_3935626_3 4Fe-4S single cluster domain K18006 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000006561 217.0
LYD3_k127_3935626_4 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K17999 - 1.12.1.4,1.6.5.3 0.00000000000000000000000000000000000000000000000000132 188.0
LYD3_k127_3935626_5 hydrogenase maturation protease - - - 0.000000000000000000000000000000001764 135.0
LYD3_k127_3935626_6 Histidine kinase - - - 0.000000000000000000000000000000004889 144.0
LYD3_k127_3935626_7 response regulator K07668 GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000001633 87.0
LYD3_k127_3945884_0 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 1.051e-215 682.0
LYD3_k127_3945884_1 Glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 389.0
LYD3_k127_3971466_0 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 320.0
LYD3_k127_3979121_0 Domain of Unknown Function (DUF748) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000509 300.0
LYD3_k127_3979121_1 Peptidoglycan-binding domain 1 protein - - - 0.00000000000006424 77.0
LYD3_k127_3980561_0 4fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009584 599.0
LYD3_k127_3980561_1 4fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 501.0
LYD3_k127_3980561_2 Heterodisulfide reductase, subunit B K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 342.0
LYD3_k127_3980561_3 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005751 271.0
LYD3_k127_3980561_4 4Fe-4S dicluster domain K03389,K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000001649 209.0
LYD3_k127_3980561_5 electron transfer activity K03616,K13795 - - 0.00000000000000000000005543 106.0
LYD3_k127_3980561_6 Involved in the tonB-independent uptake of proteins - - - 0.000000000001306 81.0
LYD3_k127_3980561_7 TPR repeat - - - 0.0004736 50.0
LYD3_k127_3996883_0 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000001922 207.0
LYD3_k127_3996883_1 Methyltransferase domain - - - 0.0000000000000000000000000000006181 133.0
LYD3_k127_3996883_2 oxidoreductase activity K07114 - - 0.0000000000000000000000007926 119.0
LYD3_k127_3996883_3 Lipoprotein K05811 - - 0.0000000000000000005783 98.0
LYD3_k127_3996883_4 serine-type endopeptidase activity - - - 0.0000000000003378 82.0
LYD3_k127_3996883_5 Transposase Tn5 dimerisation domain - - - 0.0009065 44.0
LYD3_k127_4002164_0 part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 319.0
LYD3_k127_4002164_1 Cobalt uptake substrate-specific transmembrane region K02007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004346 275.0
LYD3_k127_4002164_2 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000007847 206.0
LYD3_k127_4002164_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000003844 141.0
LYD3_k127_4002164_5 PFAM Nickel transport complex, NikM subunit, transmembrane K16915 - - 0.000000000000000000000006759 104.0
LYD3_k127_4002164_7 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000005288 72.0
LYD3_k127_4002164_8 - - - - 0.0008612 50.0
LYD3_k127_4014462_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006169 347.0
LYD3_k127_4014462_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007997 284.0
LYD3_k127_4014462_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000155 278.0
LYD3_k127_4017776_0 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 556.0
LYD3_k127_4017776_1 Mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 295.0
LYD3_k127_4017776_2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000001195 132.0
LYD3_k127_4019197_0 pyrroloquinoline quinone binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 493.0
LYD3_k127_4019197_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01219 - 3.2.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 346.0
LYD3_k127_4019197_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 295.0
LYD3_k127_4027705_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 2.137e-315 986.0
LYD3_k127_4027705_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009445 291.0
LYD3_k127_4027705_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000008878 234.0
LYD3_k127_4027705_3 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000008106 230.0
LYD3_k127_4027705_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000004708 208.0
LYD3_k127_4027705_5 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000913 208.0
LYD3_k127_4027705_6 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000005385 185.0
LYD3_k127_4027705_7 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000951 135.0
LYD3_k127_4027705_8 - - - - 0.00000000004906 69.0
LYD3_k127_4041775_0 phosphorelay signal transduction system K02481,K07713,K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 527.0
LYD3_k127_4041775_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 496.0
LYD3_k127_4041775_2 Histidine kinase K02482 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000002584 196.0
LYD3_k127_4041775_3 Peptidase family M54 K06974 - - 0.00000000000000000000000000000000000003189 153.0
LYD3_k127_4041775_4 Transposase - - - 0.0001875 53.0
LYD3_k127_4042972_0 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 567.0
LYD3_k127_4042972_1 Belongs to the methyltransferase superfamily K07444,K12297 - 2.1.1.173,2.1.1.264 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007853 398.0
LYD3_k127_4042972_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 313.0
LYD3_k127_4042972_3 nucleotide metabolic process - - - 0.00000000000000000000000000000000000000000000000000000000376 210.0
LYD3_k127_4042972_4 Cytidylyltransferase family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000002587 165.0
LYD3_k127_4042972_5 - - - - 0.00000000000000000000000001814 114.0
LYD3_k127_4043964_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 410.0
LYD3_k127_4043964_1 FHA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008225 341.0
LYD3_k127_4043964_2 - - - - 0.0000000002232 65.0
LYD3_k127_4043964_3 TPR repeat - - - 0.000008612 59.0
LYD3_k127_4057969_0 Non-ribosomal peptide synthetase modules and related proteins - - - 3.539e-257 843.0
LYD3_k127_4057969_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000001914 176.0
LYD3_k127_4057969_2 Ketoacyl-synthetase C-terminal extension - - - 0.000000000000000000000000000000001368 145.0
LYD3_k127_4060370_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000003418 124.0
LYD3_k127_4060370_1 Polysaccharide lyase - - - 0.000000000000000000002315 104.0
LYD3_k127_4060370_2 domain, Protein - - - 0.000009267 57.0
LYD3_k127_407264_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 4.168e-320 988.0
LYD3_k127_407264_1 adenosylhomocysteinase activity K01251 - 3.3.1.1 2.028e-194 629.0
LYD3_k127_407264_2 Mitochondrial small ribosomal subunit Rsm22 - - - 0.000000000000000000000001367 108.0
LYD3_k127_407264_3 PAP2 superfamily - - - 0.0007512 52.0
LYD3_k127_407468_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 353.0
LYD3_k127_407468_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 357.0
LYD3_k127_407468_2 CBD_II - - - 0.000000000000000000000000000000000000000000008722 178.0
LYD3_k127_407468_3 Beta-L-arabinofuranosidase, GH127 - - - 0.000000000000000000000000000000001741 145.0
LYD3_k127_407468_4 cytochrome C peroxidase - - - 0.0000000009311 59.0
LYD3_k127_407468_5 Acyl-coenzyme A 6-aminopenicillanic acid acyl-transferase - - - 0.000000001907 70.0
LYD3_k127_407468_6 Transcriptional regulatory protein, C terminal - - - 0.00000001503 62.0
LYD3_k127_407468_7 Psort location CytoplasmicMembrane, score - - - 0.000002807 51.0
LYD3_k127_407468_8 peptidase inhibitor activity - - - 0.0001629 52.0
LYD3_k127_4084328_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006276 541.0
LYD3_k127_4084328_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004058 323.0
LYD3_k127_4084328_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001265 276.0
LYD3_k127_4084328_3 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000009071 192.0
LYD3_k127_4084328_4 Barrel-sandwich domain of CusB or HlyD membrane-fusion K15727 - - 0.00000000000000000000000000000000000000000000000000348 196.0
LYD3_k127_4084328_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15725 - - 0.000000000000000005245 97.0
LYD3_k127_4084328_6 Rhomboid family - - - 0.000000003888 67.0
LYD3_k127_4092348_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 601.0
LYD3_k127_4092348_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K15726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 381.0
LYD3_k127_4092348_2 PFAM GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000004955 211.0
LYD3_k127_4092348_4 cheY-homologous receiver domain - - - 0.0000000000000231 80.0
LYD3_k127_4092348_6 DnaK suppressor protein - - - 0.000000000003918 74.0
LYD3_k127_4092348_7 Histidine kinase K13587 - 2.7.13.3 0.000000001134 70.0
LYD3_k127_4092348_8 Integrase - - - 0.0000001626 53.0
LYD3_k127_4092348_9 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0004861 48.0
LYD3_k127_4100474_0 Peptidase family M50 K11749 - - 0.0000000000000000000000000000000000000003726 154.0
LYD3_k127_4100474_1 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000002022 100.0
LYD3_k127_4100474_2 PFAM glycosyl transferase family 2 - - - 0.000002056 60.0
LYD3_k127_4114875_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1163.0
LYD3_k127_4114875_1 response regulator K07715 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 358.0
LYD3_k127_4119141_0 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 6.023e-213 684.0
LYD3_k127_4119141_1 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 519.0
LYD3_k127_4119141_2 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.000000000000000000000000000001315 136.0
LYD3_k127_4119141_3 Peptidase C14 caspase catalytic subunit p20 - - - 0.0000000000000000000005076 111.0
LYD3_k127_4119141_4 Belongs to the peptidase S1C family K04691,K04771,K04772 - 3.4.21.107 0.00000004456 66.0
LYD3_k127_4119141_5 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00001587 49.0
LYD3_k127_4119141_6 PFAM Endonuclease Exonuclease phosphatase - - - 0.00004705 51.0
LYD3_k127_4125764_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 1.369e-297 936.0
LYD3_k127_4125764_1 cyanophycin K03802 - 6.3.2.29,6.3.2.30 6.034e-233 747.0
LYD3_k127_41306_0 all-trans-retinol 13,14-reductase activity K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 562.0
LYD3_k127_41306_1 phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004151 294.0
LYD3_k127_41306_2 geranylgeranyl reductase activity K10960,K17830 - 1.3.1.101,1.3.1.111,1.3.1.83,1.3.7.11 0.0000000000000000000000000000000000000000000000216 185.0
LYD3_k127_41306_3 PD-(D/E)XK nuclease superfamily - - - 0.0005507 48.0
LYD3_k127_4136523_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 365.0
LYD3_k127_4136523_1 PilZ domain - - - 0.000000000000000000000000002605 127.0
LYD3_k127_4144556_0 C-terminal domain of CHU protein family - - - 0.00001083 57.0
LYD3_k127_4153866_0 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 427.0
LYD3_k127_4153866_1 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000001715 109.0
LYD3_k127_4184171_0 Homeodomain-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 470.0
LYD3_k127_4184171_1 Linear amide C-N hydrolases, choloylglycine hydrolase family K01442 - 3.5.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004385 325.0
LYD3_k127_4195888_0 non-ribosomal peptide synthetase - - - 0.0 1038.0
LYD3_k127_4195888_1 Glycosyltransferase like family 2 K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 302.0
LYD3_k127_4195888_2 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000001151 224.0
LYD3_k127_4195888_3 Integrase core domain K07497 - - 0.00000000000000000000000000000000000000000000001862 179.0
LYD3_k127_4195888_4 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000001679 175.0
LYD3_k127_4195888_5 Putative transposase - - - 0.00000000000000005788 89.0
LYD3_k127_4195888_6 adhesin AidA-related - - - 0.00000003762 63.0
LYD3_k127_4195888_7 serine-type endopeptidase activity K08654 GO:0001655,GO:0001656,GO:0001822,GO:0002009,GO:0003338,GO:0005575,GO:0005576,GO:0005604,GO:0006810,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0015031,GO:0015833,GO:0030326,GO:0031012,GO:0032501,GO:0032502,GO:0033036,GO:0035107,GO:0035108,GO:0035113,GO:0042886,GO:0043588,GO:0044420,GO:0044421,GO:0045184,GO:0048513,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051234,GO:0060021,GO:0060173,GO:0060429,GO:0060993,GO:0061618,GO:0062023,GO:0071702,GO:0071705,GO:0072001 - 0.00000005057 63.0
LYD3_k127_4195888_8 Putative transposase - - - 0.0000002897 61.0
LYD3_k127_4195888_9 serine-type endopeptidase activity K08654 GO:0001655,GO:0001656,GO:0001822,GO:0002009,GO:0003338,GO:0005575,GO:0005576,GO:0005604,GO:0006810,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0015031,GO:0015833,GO:0030326,GO:0031012,GO:0032501,GO:0032502,GO:0033036,GO:0035107,GO:0035108,GO:0035113,GO:0042886,GO:0043588,GO:0044420,GO:0044421,GO:0045184,GO:0048513,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051234,GO:0060021,GO:0060173,GO:0060429,GO:0060993,GO:0061618,GO:0062023,GO:0071702,GO:0071705,GO:0072001 - 0.0005701 51.0
LYD3_k127_4197653_0 PFAM short-chain dehydrogenase reductase SDR K15314 - - 0.0 1833.0
LYD3_k127_4212023_0 Pectate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002114 246.0
LYD3_k127_4212023_1 Involved in the degradation of specific anti-sigma factors - - - 0.000000000000000000000000000000000000000001694 165.0
LYD3_k127_4212023_3 FHA domain - - - 0.000001934 57.0
LYD3_k127_4212023_4 repeat protein - - - 0.00007875 48.0
LYD3_k127_4213582_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 577.0
LYD3_k127_4213582_1 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000486 258.0
LYD3_k127_4213582_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000000000000001295 130.0
LYD3_k127_4213582_3 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 GO:0003674,GO:0003824,GO:0004633,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016020,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.36,6.3.2.5 0.000000000000000000000000000009202 124.0
LYD3_k127_4213582_4 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000004455 123.0
LYD3_k127_4213582_5 Integral membrane protein CcmA involved in cell shape determination - - - 0.00000000000000000000001088 104.0
LYD3_k127_4213582_6 PD-(D/E)XK nuclease superfamily - - - 0.0000002078 56.0
LYD3_k127_4227301_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000001769 181.0
LYD3_k127_4227301_1 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000001755 151.0
LYD3_k127_4227301_2 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000009703 86.0
LYD3_k127_4232391_0 Nickel-dependent hydrogenase K14126 - 1.8.98.5 6.133e-194 631.0
LYD3_k127_4232391_1 NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 382.0
LYD3_k127_4232391_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000882 117.0
LYD3_k127_4232391_3 spore germination K03605 - - 0.000000000000000000001106 111.0
LYD3_k127_4232391_4 Putative zinc-finger - - - 0.00002062 57.0
LYD3_k127_4232391_5 - - - - 0.0001934 53.0
LYD3_k127_4233317_0 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009143 462.0
LYD3_k127_4240781_0 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.0000000000000000000000000000000000000001985 155.0
LYD3_k127_4240781_1 TonB-dependent Receptor Plug Domain - - - 0.0000000000000000000000000000000009964 145.0
LYD3_k127_4260394_0 Alpha-L-fucosidase K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 609.0
LYD3_k127_4260394_1 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 585.0
LYD3_k127_4260394_2 Belongs to the glycosyl hydrolase 31 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 553.0
LYD3_k127_4260394_3 Glycosyl hydrolase family 62 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006813 332.0
LYD3_k127_4260394_4 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 317.0
LYD3_k127_4260394_5 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008599 283.0
LYD3_k127_4260394_6 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000004423 225.0
LYD3_k127_4260394_7 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.000000000002251 68.0
LYD3_k127_4260394_8 Belongs to the glycosyl hydrolase 12 (cellulase H) family - - - 0.00000004599 63.0
LYD3_k127_4263106_0 Forkhead associated domain - - - 0.000000000000000000000000000000000000000000000000000002493 213.0
LYD3_k127_4263106_1 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000000000002546 149.0
LYD3_k127_4263106_2 Domain of Unknown Function (DUF350) - - - 0.00000001487 59.0
LYD3_k127_4268194_0 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000001713 213.0
LYD3_k127_4268194_1 Hydrolase Family 16 - - - 0.000000000000000000000000000000000005529 139.0
LYD3_k127_4268194_2 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.000005437 53.0
LYD3_k127_4274328_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1425.0
LYD3_k127_4274328_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 369.0
LYD3_k127_4274328_2 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002205 239.0
LYD3_k127_4274328_3 efflux transmembrane transporter activity K15725 - - 0.00000005841 56.0
LYD3_k127_4292260_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 316.0
LYD3_k127_4292260_1 Zn-dependent hydrolases of the - - - 0.0000000000000000000000000000000000000005318 154.0
LYD3_k127_4292260_2 transcriptional regulator - - - 0.0000001182 59.0
LYD3_k127_4292260_3 TIR domain - - - 0.00007202 54.0
LYD3_k127_4293163_0 - - - - 0.000001418 59.0
LYD3_k127_4293163_1 Glycerate kinase family K00865 - 2.7.1.165 0.0000299 48.0
LYD3_k127_4295307_0 Acyl-CoA dehydrogenase, C-terminal domain K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 313.0
LYD3_k127_4295307_1 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 313.0
LYD3_k127_4295307_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006944 288.0
LYD3_k127_4295307_3 serine threonine protein kinase K08884 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000005859 218.0
LYD3_k127_4295307_4 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000001503 209.0
LYD3_k127_4295307_5 FecR protein - - - 0.0000000000000000000000000000000000001086 164.0
LYD3_k127_4295307_6 Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000007072 96.0
LYD3_k127_4295307_7 FHA domain - - - 0.0003162 49.0
LYD3_k127_4295307_8 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0003549 51.0
LYD3_k127_4305780_0 NHL repeat - - - 0.0000000000002729 74.0
LYD3_k127_4311293_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 2.845e-205 664.0
LYD3_k127_4311293_1 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000003561 218.0
LYD3_k127_4311293_2 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.000000000000000000000000000002824 123.0
LYD3_k127_4311293_3 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.000000000000000000000000000003975 132.0
LYD3_k127_4311293_4 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000006243 120.0
LYD3_k127_4314138_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009632 562.0
LYD3_k127_4314138_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007549 329.0
LYD3_k127_4314138_2 Encoded by - - - 0.000000000000000000000000000000000000000000000000000000000003087 223.0
LYD3_k127_4314138_3 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.000000000000000001053 101.0
LYD3_k127_4314138_5 amino acid activation for nonribosomal peptide biosynthetic process K20952 - - 0.00000221 59.0
LYD3_k127_4327767_0 beta-galactosidase activity K01190 - 3.2.1.23 2.08e-288 899.0
LYD3_k127_4327767_1 Coagulation factor 5 8 type domain protein K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000006664 282.0
LYD3_k127_4327767_2 Alpha-1,2-mannosidase - - - 0.0000000001321 67.0
LYD3_k127_4336727_0 Pyruvate phosphate dikinase PEP K01007 - 2.7.9.2 1.29e-254 812.0
LYD3_k127_4336727_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030145,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046537,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 563.0
LYD3_k127_4336727_2 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 497.0
LYD3_k127_4336727_5 Outer membrane lipoprotein-sorting protein K07003 - - 0.0000000000000000000000005475 111.0
LYD3_k127_4336727_6 - - - - 0.00004291 53.0
LYD3_k127_4340473_0 O-acyltransferase activity K13018 - 2.3.1.201 0.000000000000000000000000000000000000000000000000000000000000000001305 236.0
LYD3_k127_4340473_1 - - - - 0.00000000000000000001483 105.0
LYD3_k127_4340473_2 23S rRNA-intervening sequence protein - - - 0.0000095 55.0
LYD3_k127_4346409_0 DEAD DEAH box helicase - - - 1.854e-319 998.0
LYD3_k127_4346409_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses K01950 - 6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 548.0
LYD3_k127_4346409_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006034 493.0
LYD3_k127_4346409_3 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000467 239.0
LYD3_k127_4346409_4 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000001866 234.0
LYD3_k127_4346409_5 RNA recognition motif - - - 0.0000000000000000000000000008384 115.0
LYD3_k127_4346409_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0001197 55.0
LYD3_k127_4349073_0 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 352.0
LYD3_k127_4349073_1 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000002082 263.0
LYD3_k127_4349073_2 CBD_II - - - 0.00000000000000000000000000000000000000000000000000000007804 200.0
LYD3_k127_4349073_3 MFS/sugar transport protein - - - 0.0000000000000000000000000000000000000000000006105 183.0
LYD3_k127_4371245_0 PFAM Polysulphide reductase, NrfD - - - 9.223e-227 711.0
LYD3_k127_4371245_1 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009442 426.0
LYD3_k127_4371245_2 Protein of unknown function (DUF3341) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 421.0
LYD3_k127_4371245_3 4Fe-4S dicluster domain K00184 - - 0.000000000001357 68.0
LYD3_k127_4371245_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000001056 72.0
LYD3_k127_4374957_0 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 453.0
LYD3_k127_4374957_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007541 334.0
LYD3_k127_4374957_2 serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002367 291.0
LYD3_k127_4374957_3 DTW K05812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007733 277.0
LYD3_k127_4374957_4 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001426 257.0
LYD3_k127_4374957_5 Phosphomethylpyrimidine kinase K00941,K14153 - 2.5.1.3,2.7.1.49,2.7.4.7 0.0000000000000000000000000000009638 133.0
LYD3_k127_4374957_6 - - - - 0.0002845 49.0
LYD3_k127_4375176_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 3.16e-247 779.0
LYD3_k127_4375176_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006166 252.0
LYD3_k127_4375176_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000003996 229.0
LYD3_k127_4375176_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000001573 177.0
LYD3_k127_4375881_0 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004681 320.0
LYD3_k127_4375881_1 Phosphoglucomutase K01835 - 5.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 288.0
LYD3_k127_4399222_0 PFAM nickel-dependent hydrogenase large subunit K00436,K14126 - 1.12.1.2,1.8.98.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000638 405.0
LYD3_k127_4399222_1 radical SAM domain protein - - - 0.00000000000000000000000000000000002173 141.0
LYD3_k127_4399222_2 PFAM NADH ubiquinone oxidoreductase 20 kDa subunit K14128 - 1.8.98.5 0.0000000000000000000000000000000001294 134.0
LYD3_k127_4399222_3 PFAM Roadblock LC7 family protein K07131 - - 0.00000000000000000000000000001864 121.0
LYD3_k127_4399222_4 OmpA family K03286 - - 0.000000000004482 76.0
LYD3_k127_4399222_5 4Fe-4S binding domain - - - 0.00000000002038 74.0
LYD3_k127_4409739_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007454 376.0
LYD3_k127_4409739_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000002385 232.0
LYD3_k127_4409739_2 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000004893 227.0
LYD3_k127_4409739_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000003353 183.0
LYD3_k127_4409739_4 PFAM Class I peptide chain release factor - - - 0.00000000000000000000000000001374 122.0
LYD3_k127_4409739_5 Dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000001474 106.0
LYD3_k127_442522_0 Zn-dependent proteases and their inactivated homologs K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008746 543.0
LYD3_k127_442522_1 Putative modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 520.0
LYD3_k127_442522_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000618 280.0
LYD3_k127_442522_3 Sigma-70, region 4 - - - 0.0000000000000000000000000000000000000000000001042 174.0
LYD3_k127_442522_4 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000004849 177.0
LYD3_k127_442522_5 MerR HTH family regulatory protein - - - 0.00000000000000000000000000000000000004891 150.0
LYD3_k127_442522_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000005879 144.0
LYD3_k127_442522_7 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000004266 64.0
LYD3_k127_443565_0 Periplasmic protein TonB links inner and outer membranes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006306 531.0
LYD3_k127_443565_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 341.0
LYD3_k127_4455516_0 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 306.0
LYD3_k127_4455516_1 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001902 264.0
LYD3_k127_4455516_2 HAMP domain K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000003574 265.0
LYD3_k127_4455516_3 PASTA K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.0000000000000000000000000000000000000000000000000006279 205.0
LYD3_k127_4455516_4 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000001171 201.0
LYD3_k127_4458418_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 321.0
LYD3_k127_4458418_1 - - - - 0.0000000000002072 74.0
LYD3_k127_4458418_2 Protein of unknown function (DUF721) - - - 0.000001513 55.0
LYD3_k127_4458418_3 Phosphatidylinositol-glycan-specific phospholipase D K01127 GO:0001501,GO:0001503,GO:0001525,GO:0001568,GO:0001667,GO:0001944,GO:0002040,GO:0002042,GO:0002062,GO:0002253,GO:0002376,GO:0002429,GO:0002430,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004620,GO:0004621,GO:0004630,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006109,GO:0006464,GO:0006497,GO:0006501,GO:0006505,GO:0006507,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008081,GO:0008150,GO:0008152,GO:0008285,GO:0008286,GO:0009058,GO:0009059,GO:0009268,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010243,GO:0010562,GO:0010594,GO:0010595,GO:0010604,GO:0010631,GO:0010632,GO:0010634,GO:0010646,GO:0010647,GO:0010675,GO:0010676,GO:0010692,GO:0010694,GO:0010817,GO:0010866,GO:0010867,GO:0010896,GO:0010897,GO:0010906,GO:0010907,GO:0010921,GO:0010922,GO:0010941,GO:0010942,GO:0010982,GO:0010983,GO:0010984,GO:0010986,GO:0014070,GO:0016247,GO:0016298,GO:0016477,GO:0016787,GO:0016788,GO:0017080,GO:0018410,GO:0019216,GO:0019220,GO:0019222,GO:0019538,GO:0019637,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030334,GO:0030335,GO:0031012,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0032024,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0033993,GO:0034014,GO:0034284,GO:0034645,GO:0035239,GO:0035295,GO:0035303,GO:0035306,GO:0035690,GO:0035701,GO:0035774,GO:0036211,GO:0036314,GO:0036315,GO:0040011,GO:0040012,GO:0040017,GO:0042127,GO:0042157,GO:0042158,GO:0042176,GO:0042221,GO:0042268,GO:0042493,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043434,GO:0043534,GO:0043542,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044421,GO:0044424,GO:0044464,GO:0045732,GO:0045833,GO:0045834,GO:0045862,GO:0045913,GO:0045919,GO:0045937,GO:0046470,GO:0046486,GO:0046488,GO:0046883,GO:0046887,GO:0046889,GO:0046890,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0050994,GO:0050995,GO:0051043,GO:0051044,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051216,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051592,GO:0051674,GO:0051716,GO:0060255,GO:0060341,GO:0061178,GO:0061448,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070633,GO:0070723,GO:0070887,GO:0071214,GO:0071241,GO:0071248,GO:0071277,GO:0071281,GO:0071282,GO:0071310,GO:0071375,GO:0071396,GO:0071397,GO:0071401,GO:0071407,GO:0071417,GO:0071467,GO:0071495,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0090087,GO:0090130,GO:0090132,GO:0090207,GO:0090208,GO:0090209,GO:0090276,GO:0090277,GO:0097164,GO:0097241,GO:0097305,GO:0097306,GO:0098772,GO:0104004,GO:1900076,GO:1901135,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903509,GO:1903530,GO:1903532,GO:1904951,GO:2000145,GO:2000147 3.1.4.50 0.00000212 60.0
LYD3_k127_4459125_0 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 308.0
LYD3_k127_4459125_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002617 302.0
LYD3_k127_4459125_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000003637 69.0
LYD3_k127_4510485_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002074 285.0
LYD3_k127_4510485_1 PFAM amino acid permease-associated region K03294 - - 0.00000000000000000000000000000000000000000000000000000000000009716 230.0
LYD3_k127_4510485_2 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000004471 207.0
LYD3_k127_4515644_0 Glycosyl hydrolase 36 superfamily, catalytic domain K00702 - 2.4.1.20 6.08e-233 790.0
LYD3_k127_4515644_1 dockerin type K15924 - 3.2.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 312.0
LYD3_k127_4515644_2 Alpha-L-arabinofuranosidase C-terminus - - - 0.000001162 62.0
LYD3_k127_4515644_3 Glycosyltransferase family 87 K13671 - - 0.0004685 53.0
LYD3_k127_4523719_0 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 6.358e-270 854.0
LYD3_k127_4523719_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000001824 210.0
LYD3_k127_4523719_2 Methyltransferase, chemotaxis proteins K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000005836 173.0
LYD3_k127_4539066_0 ATPase activity K06027 - 3.6.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 510.0
LYD3_k127_4539066_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 388.0
LYD3_k127_4539066_2 Protein of unknown function (DUF1257) - - - 0.00000000000000000001339 103.0
LYD3_k127_4539066_3 cellulase activity - - - 0.00000004179 66.0
LYD3_k127_4539066_4 IgA Peptidase M64 - - - 0.0005267 53.0
LYD3_k127_4541458_0 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 338.0
LYD3_k127_4541458_1 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000001303 224.0
LYD3_k127_4541458_2 Phage derived protein Gp49-like (DUF891) - - - 0.000000000000000000000000000003286 124.0
LYD3_k127_4541458_3 Helix-turn-helix domain - - - 0.000000000000006514 80.0
LYD3_k127_4548117_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147 - 3.1.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009317 512.0
LYD3_k127_4548117_1 AsmA family K07289 - - 0.0000000000000000000000000000000000000000000000000000001274 224.0
LYD3_k127_4548117_2 belongs to the thioredoxin family K03671,K05838 - - 0.000000000000000000000000000000000000000000000000007979 192.0
LYD3_k127_4548117_3 PIN domain K07063 - - 0.0000000000000000000000000000009682 126.0
LYD3_k127_4548117_4 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.00000000000000000005519 91.0
LYD3_k127_4548117_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000302,GO:0000988,GO:0000990,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009405,GO:0009408,GO:0009410,GO:0009605,GO:0009607,GO:0009628,GO:0009636,GO:0009889,GO:0010035,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0040007,GO:0042221,GO:0042493,GO:0042542,GO:0043207,GO:0043254,GO:0044087,GO:0044110,GO:0044116,GO:0044117,GO:0044119,GO:0044403,GO:0044419,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0075136,GO:0080090,GO:0090034,GO:0097159,GO:0140110,GO:1901363,GO:1901700,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000005691 91.0
LYD3_k127_4548117_6 PQQ-like domain - - - 0.00000004402 66.0
LYD3_k127_4554677_0 Utp--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000082 331.0
LYD3_k127_4554677_1 polysaccharide export K01991 - - 0.00000000000000000000000000000000000000000001594 171.0
LYD3_k127_4554677_2 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040008,GO:0044464,GO:0045926,GO:0048519,GO:0050789,GO:0065007,GO:0071944 - 0.0002307 51.0
LYD3_k127_4558830_0 Beta-ketoacyl synthase, C-terminal domain K09458,K21789 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000001696 267.0
LYD3_k127_4558830_1 Psort location Cytoplasmic, score 8.96 K02078 - - 0.00000000001309 74.0
LYD3_k127_4558830_2 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity K02372 - 4.2.1.59 0.00000003489 64.0
LYD3_k127_4558830_3 Belongs to the beta-ketoacyl-ACP synthases family K05551,K09458 - 2.3.1.179,2.3.1.235,2.3.1.260 0.00000008535 66.0
LYD3_k127_4558830_4 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 0.00002543 55.0
LYD3_k127_4559935_0 alkaline phosphatase activity - - - 0.000000000000000000000000000000000001632 161.0
LYD3_k127_4559935_1 EF-hand, calcium binding motif - - - 0.0005863 49.0
LYD3_k127_4562498_0 DNA-binding transcriptional activator of the SARP family - - - 2.525e-207 666.0
LYD3_k127_4562498_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 317.0
LYD3_k127_4562498_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005697 306.0
LYD3_k127_4562498_3 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008907 291.0
LYD3_k127_4562498_4 cheY-homologous receiver domain K11443 - - 0.0000000000000000000000000000000000000000008407 160.0
LYD3_k127_4562498_5 Bacterial-like globin - - - 0.000000000000000000000000000000000000000006911 168.0
LYD3_k127_4562498_6 Stage II sporulation protein E K07315 - 3.1.3.3 0.00000000000000000000000000000000000000006049 174.0
LYD3_k127_4562498_7 lipoprotein biosynthetic process - - - 0.000000000002902 79.0
LYD3_k127_457021_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 2.914e-261 813.0
LYD3_k127_457021_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000006483 149.0
LYD3_k127_4590448_0 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000004617 133.0
LYD3_k127_4590448_1 FecR protein - - - 0.000000000000000000000000000001699 136.0
LYD3_k127_4590448_3 oxidoreductase activity K07114 - - 0.000000000000101 84.0
LYD3_k127_4591687_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 541.0
LYD3_k127_4591687_2 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000000000000000000000000000000007277 151.0
LYD3_k127_4591687_3 serine threonine protein kinase - - - 0.00005724 46.0
LYD3_k127_4591687_5 belongs to the sigma-70 factor family, ECF subfamily - - - 0.0005636 53.0
LYD3_k127_4592859_0 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007022 275.0
LYD3_k127_4592859_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.00000000000000000000000000001148 119.0
LYD3_k127_4592859_2 domain protein - - - 0.00000000000003312 87.0
LYD3_k127_4605734_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 531.0
LYD3_k127_4605734_1 PFAM Peptidase M16 inactive domain K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009856 465.0
LYD3_k127_4605734_2 Peptidase, M16 K07263,K07623 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 459.0
LYD3_k127_4605734_3 RecQ zinc-binding K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 452.0
LYD3_k127_4605734_4 PFAM Radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 359.0
LYD3_k127_4605734_5 protein kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000003515 251.0
LYD3_k127_4605734_6 Polysaccharide deacetylase K22278 - 3.5.1.104 0.0000000000000000000000000000000000000000000000000006397 205.0
LYD3_k127_4605734_7 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000000006725 172.0
LYD3_k127_4605734_8 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000003128 142.0
LYD3_k127_4605734_9 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000007001 111.0
LYD3_k127_4606996_0 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004713 382.0
LYD3_k127_4606996_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000005569 199.0
LYD3_k127_4608479_0 Transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 440.0
LYD3_k127_4608479_1 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001109 281.0
LYD3_k127_4608479_2 Peptidase dimerisation domain K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000001647 198.0
LYD3_k127_4608479_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.0000000000000000000000000000000002457 149.0
LYD3_k127_4608858_0 Transglycosylase SLT domain K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 424.0
LYD3_k127_4611896_0 response regulator K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 593.0
LYD3_k127_4633284_0 two component, sigma54 specific, transcriptional regulator, Fis family K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 530.0
LYD3_k127_4633284_1 PFAM ATP-binding region, ATPase domain protein K07709 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 395.0
LYD3_k127_4633284_2 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 355.0
LYD3_k127_4633284_3 PFAM secretion protein HlyD family protein K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001185 282.0
LYD3_k127_4633284_4 Transcription factor zinc-finger - - - 0.000000000000000000000000000000000001345 149.0
LYD3_k127_4646820_0 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 538.0
LYD3_k127_4646820_1 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000000000000000008772 203.0
LYD3_k127_4646820_2 Restriction endonuclease K07448 - - 0.00000000000000000000000000000000000000000000000000000165 198.0
LYD3_k127_4646820_3 - - - - 0.0004221 50.0
LYD3_k127_464877_0 histidine kinase, HAMP - - - 0.0000000000000000000000000000000000000000000000000000008122 211.0
LYD3_k127_464877_1 Polyprenyl synthetase K00795 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009536,GO:0009842,GO:0009987,GO:0016114,GO:0016740,GO:0016765,GO:0019637,GO:0033385,GO:0033386,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0090407,GO:1901576 2.5.1.1,2.5.1.10 0.0000000000000000000002279 106.0
LYD3_k127_464877_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000008685 68.0
LYD3_k127_464877_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00003013 57.0
LYD3_k127_4663821_0 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000005171 192.0
LYD3_k127_4663821_1 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000000003317 79.0
LYD3_k127_4664126_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 9.923e-205 653.0
LYD3_k127_4664126_1 Bacterial regulatory protein, Fis family K11384 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 581.0
LYD3_k127_4664126_2 dienelactone hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000444 344.0
LYD3_k127_4665752_0 Alpha-L-fucosidase K01206 - 3.2.1.51 1.698e-259 818.0
LYD3_k127_4665752_1 beta-galactosidase activity K12308 - 3.2.1.23 0.000000000000000000000000000000000000000000000000009895 190.0
LYD3_k127_4669941_0 repeat protein - - - 0.0 1244.0
LYD3_k127_4669941_1 ROK family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000589 353.0
LYD3_k127_4669941_2 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009056 374.0
LYD3_k127_4674116_0 PFAM type II secretion system K12510 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 300.0
LYD3_k127_4674116_1 PFAM type II secretion system K12511 - - 0.00000000000000000000000000000000000000000000000000000000000000002369 246.0
LYD3_k127_4674116_2 TPR repeat - - - 0.000000000000000000000000000000000000000000000000000001775 212.0
LYD3_k127_4674116_3 Type II IV secretion system protein K02283,K03609 - - 0.00000000000000000000000000000000000003381 145.0
LYD3_k127_4674116_4 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000003421 124.0
LYD3_k127_4697450_0 Protein of unknown function (DUF2786) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 336.0
LYD3_k127_4697450_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 316.0
LYD3_k127_4697450_2 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000000000000000000000006457 185.0
LYD3_k127_4697450_3 - - - - 0.0000000000001163 79.0
LYD3_k127_4699742_0 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008732 433.0
LYD3_k127_4699742_1 Belongs to the glycosyl hydrolase family 6 - - - 0.0000000000000000000000000000000000002875 158.0
LYD3_k127_4700086_0 Aldo/keto reductase family K19265 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 504.0
LYD3_k127_4700086_1 Nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000003 233.0
LYD3_k127_4701456_0 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 578.0
LYD3_k127_4701456_1 Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - 0.00000008879 64.0
LYD3_k127_4708469_0 - - - - 0.00000000000000000000000000007028 133.0
LYD3_k127_4708469_1 - - - - 0.0000004108 57.0
LYD3_k127_4715045_0 - - - - 0.00000000000000000000000000000000000000000000000000000002794 224.0
LYD3_k127_4715045_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000308 122.0
LYD3_k127_4715323_0 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 345.0
LYD3_k127_4715323_1 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000001757 218.0
LYD3_k127_4715323_2 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000003867 151.0
LYD3_k127_4715323_3 Biopolymer transport protein ExbD/TolR K03560 - - 0.0000000000000000000000000000000000005045 143.0
LYD3_k127_4718691_1 THUMP domain K07444 - - 0.00000000000000000000000000000000000000000000000001533 197.0
LYD3_k127_4718691_2 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000001291 102.0
LYD3_k127_4718691_3 Periplasmic copper-binding protein (NosD) - - - 0.0000004986 62.0
LYD3_k127_4736290_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 0.0 1304.0
LYD3_k127_4736290_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000000000000000383 142.0
LYD3_k127_4736290_3 positive regulation of growth - - - 0.00000000000000002949 83.0
LYD3_k127_4741121_0 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001822 479.0
LYD3_k127_4741121_1 Phosphoglycerate kinase K00927,K01803 - 2.7.2.3,5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001177 280.0
LYD3_k127_4741121_2 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000002727 209.0
LYD3_k127_4741121_3 GtrA-like protein - - - 0.00000000004207 72.0
LYD3_k127_4743624_0 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004408 271.0
LYD3_k127_4743624_1 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000003123 245.0
LYD3_k127_4743624_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000001427 112.0
LYD3_k127_4743624_4 ECF sigma factor K03088 - - 0.000000000000003197 86.0
LYD3_k127_47491_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009357 414.0
LYD3_k127_47491_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 414.0
LYD3_k127_47491_2 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 327.0
LYD3_k127_47491_3 Squalene--hopene cyclase K06045 - 4.2.1.129,5.4.99.17 0.0000009192 60.0
LYD3_k127_47491_4 Protein of unknown function (DUF2845) - - - 0.00001309 53.0
LYD3_k127_4751722_0 Cellulose Binding Domain Type IV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 511.0
LYD3_k127_4751722_1 Polysaccharide lyase - - - 0.0000000000000000009054 97.0
LYD3_k127_4751805_0 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 507.0
LYD3_k127_4751805_1 3'(2'),5'-bisphosphate nucleotidase activity - - - 0.00000000000000001632 83.0
LYD3_k127_4751821_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 320.0
LYD3_k127_4751821_1 4fe-4S ferredoxin, iron-sulfur binding domain protein K03737 GO:0003674,GO:0003824,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016491,GO:0016625,GO:0016903,GO:0043873,GO:0050896,GO:0055114 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000004913 206.0
LYD3_k127_4751821_2 Belongs to the glycosyl hydrolase 57 family K16149 - 2.4.1.18 0.0000000000000000000000000000005019 126.0
LYD3_k127_4751821_3 Domain of unknown function (DUF4912) K09942 - - 0.000000000000000007878 98.0
LYD3_k127_4752738_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 531.0
LYD3_k127_4752738_1 Glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001181 285.0
LYD3_k127_4752738_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.000000000000000000002327 103.0
LYD3_k127_4759913_0 repeat protein - - - 0.0 1596.0
LYD3_k127_4759913_1 COG0457 FOG TPR repeat - - - 0.000458 48.0
LYD3_k127_4763756_0 OmpA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007173 360.0
LYD3_k127_4763756_1 Large extracellular alpha-helical protein - - - 0.000000000000000000000000000000000000000000000000000000000005875 215.0
LYD3_k127_4763756_2 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000001103 169.0
LYD3_k127_4763756_3 Methyltransferase domain - - - 0.00000000000000000000000000000000000007697 157.0
LYD3_k127_4763756_4 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000005645 76.0
LYD3_k127_4763756_5 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00001489 57.0
LYD3_k127_4783634_0 Polysaccharide biosynthesis protein K01709 - 4.2.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 436.0
LYD3_k127_4783634_1 Glucose-1-phosphate cytidylyltransferase K00978 - 2.7.7.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 372.0
LYD3_k127_4783634_2 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 316.0
LYD3_k127_4783634_3 Involved in glycosylation steps downstream of mono-O- methyl-glycosyl-p-hydroxybenzoic acid derivative (p-HBAD I) and 2- O-methyl-rhamnosyl-phenolphthiocerol dimycocerosate (mycoside B) during the p-hydroxybenzoic acid derivatives (p-HBAD) and glycosylated phenolphthiocerol dimycocerosates (PGL) biosynthesis - GO:0003674,GO:0003824,GO:0006629,GO:0006643,GO:0006664,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009247,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001823 283.0
LYD3_k127_4783634_4 Glycosyl transferase family 2 - - - 0.0000003789 51.0
LYD3_k127_4784648_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 367.0
LYD3_k127_4784648_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 305.0
LYD3_k127_4784648_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 289.0
LYD3_k127_4784648_3 Molecular chaperone K05516 - - 0.0001671 49.0
LYD3_k127_4791460_0 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007669 526.0
LYD3_k127_4791460_1 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001613 265.0
LYD3_k127_4791460_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000007002 107.0
LYD3_k127_4797833_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 383.0
LYD3_k127_4797833_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000009115 76.0
LYD3_k127_4797833_2 cell-matrix adhesion K02599 - - 0.0009666 51.0
LYD3_k127_4801952_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 313.0
LYD3_k127_4801952_1 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000002995 248.0
LYD3_k127_4803733_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 2.179e-246 772.0
LYD3_k127_4806024_0 Peptidase family S58 K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 470.0
LYD3_k127_4806024_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009284 312.0
LYD3_k127_4806024_2 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000244 215.0
LYD3_k127_4814536_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 353.0
LYD3_k127_4814536_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000006082 236.0
LYD3_k127_4814536_2 Pectate lyase - - - 0.000000000000000000000000000000000002395 155.0
LYD3_k127_4818055_0 SMART helicase c2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 509.0
LYD3_k127_4818055_1 Polysaccharide biosynthesis protein K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007043 328.0
LYD3_k127_4818055_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus K04760 - - 0.000000000000000000000000000000000000000000000191 173.0
LYD3_k127_4818055_3 epimerase K07071 - - 0.00000000000000000000000000000000000000004854 157.0
LYD3_k127_4818055_4 phosphoribosyl-AMP cyclohydrolase activity K01496,K01497,K01814,K11755 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0004636,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19,3.5.4.25,3.6.1.31,5.3.1.16 0.00000000000000000000000000000009081 128.0
LYD3_k127_48200_0 Pyridine nucleotide-disulphide oxidoreductase - - - 1.752e-224 713.0
LYD3_k127_48200_1 Rhodanese Homology Domain - - - 0.000001561 61.0
LYD3_k127_4823216_0 peptidase m48, ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 306.0
LYD3_k127_4835948_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP - - - 7.314e-210 658.0
LYD3_k127_4835948_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000001786 264.0
LYD3_k127_4835948_2 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000001377 256.0
LYD3_k127_4835948_3 zinc ion binding K06204 - - 0.00000000000000000000000000006554 121.0
LYD3_k127_4840029_0 succinyl-diaminopimelate desuccinylase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 426.0
LYD3_k127_4840029_1 Nucleotidyl transferase - - - 0.000000000000000000000000000000000007244 150.0
LYD3_k127_4840029_2 PFAM Rhomboid family protein - - - 0.00000000000000000000000002921 120.0
LYD3_k127_4840029_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000003707 78.0
LYD3_k127_4840029_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000004208 78.0
LYD3_k127_4840029_5 Coagulation factor 5/8 C-terminal domain, discoidin domain - - - 0.000986 52.0
LYD3_k127_4849747_0 MlrC C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002533 457.0
LYD3_k127_4849747_1 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 393.0
LYD3_k127_4859583_0 reverse transcriptase K00986 - 2.7.7.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 539.0
LYD3_k127_4859583_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 354.0
LYD3_k127_4864368_0 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006869 403.0
LYD3_k127_4864368_1 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 370.0
LYD3_k127_4864368_2 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000000000000000000000002711 248.0
LYD3_k127_4894020_0 Glycine cleavage system regulatory protein - - - 0.000000000000000000000000000000000000000000000161 175.0
LYD3_k127_4894020_1 Neisseria PilC beta-propeller domain K02674 - - 0.0000000000000000000001514 115.0
LYD3_k127_4894020_2 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000001046 95.0
LYD3_k127_4894020_3 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008773,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0030312,GO:0044464,GO:0070566,GO:0070569,GO:0071944,GO:0140096 2.7.7.59 0.0000000000004995 77.0
LYD3_k127_4902748_0 involved in fatty acid biosynthesis. catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl- acp. kas III catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. possesses both acetoacetyl-acp synthase and acetyl transacylase activities catalytic activity acyl- acyl-carrier protein malonyl- acyl-carrier protein 3-oxoacyl- acyl-carrier protein CO2 acyl-carrier protein K00648,K21378 - 2.3.1.180,2.3.1.194 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 299.0
LYD3_k127_4902748_1 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000162 247.0
LYD3_k127_4902748_2 - - - - 0.000000000000000000000000000000000000000000000000000000009816 218.0
LYD3_k127_4902748_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000001057 161.0
LYD3_k127_4902748_4 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000001263 96.0
LYD3_k127_4906689_0 HMGL-like K01666 - 4.1.3.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005184 437.0
LYD3_k127_4906689_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 425.0
LYD3_k127_4907013_0 catalase activity K03781 GO:0005575,GO:0005623,GO:0042597,GO:0044464 1.11.1.6 2.325e-288 892.0
LYD3_k127_4907013_1 Copper binding proteins, plastocyanin/azurin family - - - 0.00000000000000000000006984 106.0
LYD3_k127_4907013_2 transcriptional regulator - - - 0.000000000000000001073 90.0
LYD3_k127_4913349_0 Belongs to the pyruvate kinase family K00873 GO:0003674,GO:0003824,GO:0004743,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0040007,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 346.0
LYD3_k127_4913349_1 Aminotransferase class-V K03430 - 2.6.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000008947 261.0
LYD3_k127_4913349_3 - - - - 0.0000000000000000000000002831 110.0
LYD3_k127_4917675_0 tRNA synthetases class II (D, K and N) K04568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 314.0
LYD3_k127_4917675_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001136 270.0
LYD3_k127_4918976_0 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 472.0
LYD3_k127_4918976_1 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 361.0
LYD3_k127_4918976_2 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 303.0
LYD3_k127_4918976_3 - - - - 0.00000000000000000000000000000000000000000000000001789 206.0
LYD3_k127_4918976_4 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000005918 183.0
LYD3_k127_4918976_5 Uncharacterized conserved protein (DUF2304) K09153 - - 0.000000000001303 79.0
LYD3_k127_4929819_0 D-alanyl-D-alanine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004953 263.0
LYD3_k127_4929819_1 Domain of unknown function (4846) - - - 0.000000000000000000000000000000000000000000000000000000000000000003455 241.0
LYD3_k127_4929819_2 membrane protein (DUF2231) - - - 0.00000000000000000003912 96.0
LYD3_k127_4930355_0 inositol 2-dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005508 281.0
LYD3_k127_4930355_1 GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000006401 169.0
LYD3_k127_4930355_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000009844 142.0
LYD3_k127_4930355_3 ATP-dependent protease La (LON) substrate-binding domain K01338,K07157 - 3.4.21.53 0.000000000000000000000000000008022 128.0
LYD3_k127_4930885_0 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 628.0
LYD3_k127_4930885_1 haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000002027 154.0
LYD3_k127_4930885_2 - - - - 0.0000000000000000000000000000000006042 136.0
LYD3_k127_4930885_3 PFAM Cytochrome c assembly protein K02195 - - 0.000001003 53.0
LYD3_k127_4934253_0 Aldehyde dehydrogenase family K00135 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009013,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016620,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0045333,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000001784 233.0
LYD3_k127_4934253_1 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.000000000000000000000000000000000000001579 150.0
LYD3_k127_4934253_2 Domains HisKA, HATPase_c - - - 0.0000000000000000000000000000000003945 137.0
LYD3_k127_4941581_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 2.668e-244 764.0
LYD3_k127_4941581_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 2.731e-210 668.0
LYD3_k127_4941581_2 Aminotransferase K11358 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 437.0
LYD3_k127_4941581_3 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000004805 209.0
LYD3_k127_4941581_4 ACT domain - - - 0.0000000000000000000000000000000000004936 153.0
LYD3_k127_4941581_5 PFAM DNA polymerase beta domain protein region - - - 0.0000000000000006607 81.0
LYD3_k127_4955910_0 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 426.0
LYD3_k127_4955910_1 serine threonine protein kinase K12132 - 2.7.11.1 0.00000001317 68.0
LYD3_k127_4955910_2 methyltransferase - - - 0.000002079 55.0
LYD3_k127_4958162_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 1.167e-228 739.0
LYD3_k127_4958162_1 Penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 376.0
LYD3_k127_4958162_2 alpha-L-arabinofuranosidase - - - 0.000000000000002891 91.0
LYD3_k127_4958162_3 TPR repeat - - - 0.00000000007166 74.0
LYD3_k127_4962263_0 Alpha-L-arabinofuranosidase B, catalytic - - - 0.0000000000000000000000000000000000000000000000008461 195.0
LYD3_k127_4985113_0 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 436.0
LYD3_k127_4985113_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 443.0
LYD3_k127_4985113_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008201 355.0
LYD3_k127_4985113_3 Ferredoxin - - - 0.000000000000000000000000000000000000000000000009449 173.0
LYD3_k127_4985113_4 phosphorelay signal transduction system - - - 0.000000000000000000000000004621 128.0
LYD3_k127_4985113_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000004505 97.0
LYD3_k127_4985113_6 signal transduction histidine kinase - - - 0.000001823 61.0
LYD3_k127_4985113_7 Sterol carrier protein - - - 0.000499 50.0
LYD3_k127_4994638_0 Alpha-galactosidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000022 291.0
LYD3_k127_4994638_1 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000009063 143.0
LYD3_k127_4994638_2 D-Tyr-tRNA(Tyr) deacylase K07560 - - 0.00000418 49.0
LYD3_k127_5006408_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 522.0
LYD3_k127_5006408_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004168 455.0
LYD3_k127_5006408_2 E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate K00164 - 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000003015 241.0
LYD3_k127_5009106_0 Sulfatase - - - 1.479e-270 849.0
LYD3_k127_5009106_1 mannose metabolic process K01191 - 3.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008501 550.0
LYD3_k127_5009106_2 radical SAM domain protein K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 462.0
LYD3_k127_5009106_3 Two component, sigma54 specific, transcriptional regulator, Fis family K07712 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009278 273.0
LYD3_k127_5009106_4 transferase activity, transferring glycosyl groups K00720 - 2.4.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000005763 257.0
LYD3_k127_5009106_5 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000000000000000000000000000000000000000000000137 200.0
LYD3_k127_5009106_6 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000002031 73.0
LYD3_k127_5009106_7 Belongs to the glycosyl hydrolase 2 family - - - 0.00001254 55.0
LYD3_k127_5009106_8 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00001661 56.0
LYD3_k127_5009479_0 repeat protein - - - 0.0 1078.0
LYD3_k127_5009479_1 Biotin carboxylase K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 583.0
LYD3_k127_5009479_2 Tetratricopeptide repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 329.0
LYD3_k127_5009479_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000014 193.0
LYD3_k127_5009479_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000002565 133.0
LYD3_k127_5009479_5 Roadblock/LC7 domain - - - 0.000000000000000000000001094 107.0
LYD3_k127_5009479_6 Tetratricopeptide repeat - - - 0.000000402 63.0
LYD3_k127_5009479_7 SIR2-like domain - - - 0.000000922 62.0
LYD3_k127_5029066_0 Belongs to the glycosyl hydrolase family 6 K19668 - 3.2.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000002049 276.0
LYD3_k127_5029066_1 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000003077 182.0
LYD3_k127_5029066_2 negative regulation of transforming growth factor beta1 production K03068,K06261,K06593,K08867,K09187,K12488,K13738,K14972,K20050,K20371 GO:0000003,GO:0001654,GO:0001667,GO:0001745,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0017124,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030100,GO:0030154,GO:0030496,GO:0030707,GO:0030855,GO:0032153,GO:0032154,GO:0032155,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032794,GO:0032879,GO:0034329,GO:0034330,GO:0034332,GO:0034333,GO:0040011,GO:0043062,GO:0043063,GO:0044085,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0044703,GO:0045171,GO:0045177,GO:0045179,GO:0045216,GO:0045807,GO:0048259,GO:0048260,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050839,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051302,GO:0051674,GO:0051704,GO:0051726,GO:0060429,GO:0060627,GO:0065007,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0090596,GO:0097435,GO:0098590,GO:0099568,GO:0099738 2.1.1.43,2.7.11.1 0.0000000000000000000000000000000007539 149.0
LYD3_k127_5045928_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 437.0
LYD3_k127_5045928_1 Putative metal-binding motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004617 264.0
LYD3_k127_5045928_2 NAT, N-acetyltransferase, of N-acetylglutamate synthase K12659,K22478 - 1.2.1.38,2.3.1.1,2.7.2.8 0.000000000000000000000000000000000000000000000008268 194.0
LYD3_k127_5053615_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 325.0
LYD3_k127_5053615_1 dockerin type K15924 - 3.2.1.136 0.000000000000000000000000000000000000000000001085 188.0
LYD3_k127_5053615_2 Thioredoxin - - - 0.000000000000000008223 86.0
LYD3_k127_5053615_3 PFAM Tetratricopeptide repeat - - - 0.0000006835 61.0
LYD3_k127_5064984_0 copper-translocating P-type ATPase K17686 - 3.6.3.54 3.042e-268 847.0
LYD3_k127_5064984_1 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 549.0
LYD3_k127_5064984_2 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 358.0
LYD3_k127_5064997_0 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000881 543.0
LYD3_k127_5064997_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 505.0
LYD3_k127_5064997_2 COG2148 Sugar transferases involved in lipopolysaccharide synthesis K03606 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 348.0
LYD3_k127_5064997_3 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000000004989 182.0
LYD3_k127_5064997_4 cheY-homologous receiver domain - - - 0.0000000000000000000000001659 114.0
LYD3_k127_5064997_5 - - - - 0.000000000000003802 76.0
LYD3_k127_5067751_0 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 499.0
LYD3_k127_5067751_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 416.0
LYD3_k127_5067751_2 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 288.0
LYD3_k127_5069388_0 DUF3160 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004787 452.0
LYD3_k127_5069388_1 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 429.0
LYD3_k127_5069388_2 Ricin-type beta-trefoil - - - 0.0000000000000000000000000000000000006698 158.0
LYD3_k127_5075888_0 Hydrolase Family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000002376 233.0
LYD3_k127_5075888_2 beta-fructofuranosidase activity - - - 0.000000004479 67.0
LYD3_k127_507750_0 metal-dependent phosphohydrolase HD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 586.0
LYD3_k127_507750_1 Predicted membrane protein (DUF2254) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 408.0
LYD3_k127_507750_2 23S rRNA-intervening sequence protein - - - 0.000000000000002609 80.0
LYD3_k127_507750_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.1.33 0.00000001917 61.0
LYD3_k127_507750_4 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.0006684 51.0
LYD3_k127_5087411_0 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008682 260.0
LYD3_k127_5087411_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000001887 179.0
LYD3_k127_5087411_2 Tetratricopeptide repeat K13342 - - 0.00000003013 67.0
LYD3_k127_5087411_3 - - - - 0.0000002191 61.0
LYD3_k127_5107204_0 Glycosyl hydrolase 36 superfamily, catalytic domain K00702 - 2.4.1.20 1.726e-270 855.0
LYD3_k127_5107204_1 Major facilitator Superfamily K03292,K16248 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009812 440.0
LYD3_k127_5107204_2 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 405.0
LYD3_k127_5107204_3 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001001 276.0
LYD3_k127_5107204_4 conserved protein (DUF2156) K01163 - - 0.0000000000000000000000000000000000000000000000000000000000000000001959 251.0
LYD3_k127_5107204_5 FHA domain - - - 0.000000000000000000000000000000000000000000000000000001133 206.0
LYD3_k127_5107204_6 esterase - - - 0.00000000000000000000000000000000000000000000001308 183.0
LYD3_k127_5107204_7 BadF BadG BcrA BcrD - - - 0.00000000000000000000000000000000000000000000008997 180.0
LYD3_k127_5107204_8 PDZ DHR GLGF domain protein - - - 0.000000000000003757 88.0
LYD3_k127_5144881_0 guanyl-nucleotide exchange factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006432 283.0
LYD3_k127_5144881_1 Heat shock 70 kDa protein K04043 - - 0.0000000000000000000000008995 122.0
LYD3_k127_5144881_2 Protein of unknown function (DUF1549) - - - 0.000000000173 66.0
LYD3_k127_5144881_3 diguanylate cyclase - - - 0.0005723 46.0
LYD3_k127_5147639_0 Belongs to the ompA family K03286,K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003102 336.0
LYD3_k127_5147639_1 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002932 305.0
LYD3_k127_5147639_2 Stigma-specific protein, Stig1 - - - 0.0000000000000000000000000000000004174 153.0
LYD3_k127_5147639_3 Stigma-specific protein, Stig1 - - - 0.0000000000000000000000000001844 134.0
LYD3_k127_5147639_4 Stigma-specific protein, Stig1 - GO:0000003,GO:0003006,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0042335,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458 - 0.00003192 58.0
LYD3_k127_5149889_0 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 597.0
LYD3_k127_5149889_1 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001625 269.0
LYD3_k127_5149889_2 Methyltransferase domain - - - 0.000006514 53.0
LYD3_k127_5151952_0 2 iron, 2 sulfur cluster binding K02823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 284.0
LYD3_k127_5151952_1 Transposase IS200 like - - - 0.000000000000000000000000000000000000000000000000000003062 201.0
LYD3_k127_5151952_2 carbon-nitrogen ligase activity, with glutamine as amido-N-donor K09117 - - 0.000000000000000000000000001949 115.0
LYD3_k127_5151952_3 DNA polymerase beta domain protein region K07075 - - 0.00000000000000000001823 100.0
LYD3_k127_5151952_4 2 iron, 2 sulfur cluster binding K02823 - - 0.00003266 51.0
LYD3_k127_5151952_5 IrrE N-terminal-like domain K07110,K21686 GO:0001666,GO:0006082,GO:0006355,GO:0006629,GO:0006631,GO:0006950,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016999,GO:0017144,GO:0019219,GO:0019222,GO:0019541,GO:0019679,GO:0019752,GO:0031323,GO:0031326,GO:0032787,GO:0036293,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044403,GO:0044419,GO:0046459,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0070482,GO:0071704,GO:0075136,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.0001693 52.0
LYD3_k127_5154009_0 Lamin Tail Domain - - - 0.000000000000003496 86.0
LYD3_k127_5154009_1 COG1520 FOG WD40-like repeat - - - 0.000000000001765 80.0
LYD3_k127_5165207_0 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001634 305.0
LYD3_k127_5165207_1 Alpha-L-arabinofuranosidase B, catalytic - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004564 286.0
LYD3_k127_5165207_10 PFAM RNP-1 like RNA-binding protein - - - 0.00000000000000000000001926 104.0
LYD3_k127_5165207_12 PD-(D/E)XK nuclease superfamily - - - 0.00001506 49.0
LYD3_k127_5165207_13 Tetratricopeptide repeat - - - 0.00002098 57.0
LYD3_k127_5165207_2 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000292 276.0
LYD3_k127_5165207_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008129 273.0
LYD3_k127_5165207_4 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001186 267.0
LYD3_k127_5165207_5 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000006015 242.0
LYD3_k127_5165207_6 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000000000001064 231.0
LYD3_k127_5165207_7 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000557 156.0
LYD3_k127_5165207_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000001117 116.0
LYD3_k127_5177496_0 Involved in the tonB-independent uptake of proteins K03641 - - 2.32e-295 925.0
LYD3_k127_5177496_1 Glycosyl hydrolases family 8 K15531 - 3.2.1.156 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 422.0
LYD3_k127_5177496_2 TIGRFAM Hopanoid biosynthesis associated RND transporter like protein HpnN K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006204 389.0
LYD3_k127_5177496_3 Alpha-L-arabinofuranosidase B, catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000001069 253.0
LYD3_k127_5177496_4 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000000000000000000002721 211.0
LYD3_k127_5177496_7 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000003187 104.0
LYD3_k127_5177496_8 PD-(D/E)XK nuclease superfamily - - - 0.000786 45.0
LYD3_k127_5180594_1 5-formyltetrahydrofolate cyclo-ligase activity K07137 - - 0.0003809 48.0
LYD3_k127_5180594_2 Forkhead associated domain - - - 0.000801 49.0
LYD3_k127_5181078_0 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005413 266.0
LYD3_k127_5181078_1 PFAM amine oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001647 252.0
LYD3_k127_5181078_2 endonuclease activity - - - 0.000000000000000000000000000000000000000001028 169.0
LYD3_k127_5181078_3 - - - - 0.0000000000657 67.0
LYD3_k127_5181078_4 - - - - 0.0002068 51.0
LYD3_k127_5181333_0 dockerin type K15924 - 3.2.1.136 0.0000000000000000000000000000000000000000000001364 185.0
LYD3_k127_5181333_1 S-layer homology domain - - - 0.00000000000000000000000000007904 135.0
LYD3_k127_5181333_2 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000009076 99.0
LYD3_k127_5181333_3 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.0000000000000002873 89.0
LYD3_k127_5181333_4 domain, Protein - - - 0.00000000000004757 87.0
LYD3_k127_5189097_1 aldolase class II K01624 - 4.1.2.13 0.000000000000000000006638 92.0
LYD3_k127_5215995_0 serine threonine protein kinase K08884,K12132 GO:0002237,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005539,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009847,GO:0009987,GO:0010033,GO:0010243,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0032494,GO:0032502,GO:0036211,GO:0042221,GO:0042834,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071224,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0071944,GO:0097367,GO:0140096,GO:1901564,GO:1901698,GO:1901699,GO:1901700,GO:1901701 2.7.11.1 0.00000000000000001435 89.0
LYD3_k127_5218671_0 Periplasmic protein TonB links inner and outer membranes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007286 539.0
LYD3_k127_5218671_1 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 347.0
LYD3_k127_5218671_11 DNA integration - - - 0.00000001718 59.0
LYD3_k127_5218671_12 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000004439 56.0
LYD3_k127_5218671_13 Putative transposase - - - 0.00009517 52.0
LYD3_k127_5218671_2 Peptidase C14 caspase catalytic subunit p20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004731 323.0
LYD3_k127_5218671_3 transposition K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004935 279.0
LYD3_k127_5218671_4 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000001567 183.0
LYD3_k127_5218671_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000001499 128.0
LYD3_k127_5218671_6 Glycosyl transferase, family 2 - - - 0.00000000000000000006497 101.0
LYD3_k127_5218671_8 Glycosyltransferase like family 2 - - - 0.000000000000002007 90.0
LYD3_k127_5218671_9 Transcriptional regulatory protein, C terminal - - - 0.0000000000001278 72.0
LYD3_k127_5219026_0 pfkB family carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 356.0
LYD3_k127_5219026_1 Carbohydrate family 9 binding domain-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001837 295.0
LYD3_k127_5219026_2 PFAM NUDIX hydrolase - - - 0.000000000000000000000000000000000000000000000000000000006348 207.0
LYD3_k127_5219026_3 Cysteine-rich secretory protein family - - - 0.000000000000000000000000000000000000000000000000001183 203.0
LYD3_k127_5219026_4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000005586 59.0
LYD3_k127_5223731_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 9.476e-229 730.0
LYD3_k127_5223731_1 Ppx/GppA phosphatase family K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009079 601.0
LYD3_k127_5223731_2 Phosphohistidine phosphatase, SixA K08296 - - 0.0000000000000000005704 96.0
LYD3_k127_5223731_3 Acid phosphatase homologues - - - 0.00000000004585 75.0
LYD3_k127_5223731_4 CHAD domain containing protein - - - 0.000000001724 68.0
LYD3_k127_5224246_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 6.457e-269 832.0
LYD3_k127_5225989_0 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006748 577.0
LYD3_k127_5225989_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008812 452.0
LYD3_k127_5225989_2 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000009037 107.0
LYD3_k127_5225989_3 Tetratricopeptide repeat - - - 0.00000000000000000005277 97.0
LYD3_k127_5225989_5 amine dehydrogenase activity - - - 0.0000000002976 73.0
LYD3_k127_5248605_0 Protein conserved in bacteria K09955 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 575.0
LYD3_k127_5248605_1 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 300.0
LYD3_k127_5248605_2 DNA-templated transcription, initiation - - - 0.000000000000000001129 94.0
LYD3_k127_5254789_0 lycopene cyclase K06443 - 5.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 365.0
LYD3_k127_5254789_1 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000002832 120.0
LYD3_k127_5254789_2 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.0000000000000000000001962 104.0
LYD3_k127_5259947_0 PFAM glycoside hydrolase family 3 K05349 - 3.2.1.21 3.502e-266 846.0
LYD3_k127_5259947_1 Glycosyl transferase family 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 474.0
LYD3_k127_5259947_10 general secretion pathway protein G K02456 - - 0.000000006103 63.0
LYD3_k127_5259947_11 polysaccharide catabolic process K01218 - 3.2.1.78 0.0008485 51.0
LYD3_k127_5259947_2 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 430.0
LYD3_k127_5259947_3 Transposase IS200 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001035 272.0
LYD3_k127_5259947_4 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000000000000009841 240.0
LYD3_k127_5259947_5 Right handed beta helix region - - - 0.00000000000000000000000000000000000000000000000000000000002996 227.0
LYD3_k127_5259947_7 - - - - 0.0000000000000000000000009977 114.0
LYD3_k127_5259947_8 Domain of unknown function (DUF4160) - - - 0.000000000000001863 85.0
LYD3_k127_5259947_9 Protein of unknown function (DUF2442) - - - 0.00000000000248 74.0
LYD3_k127_5263054_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000004617 195.0
LYD3_k127_5263054_1 cell adhesion involved in biofilm formation - - - 0.000000000000000000005451 110.0
LYD3_k127_5263054_2 DNA helicase K03657 - 3.6.4.12 0.00000000000000000002754 91.0
LYD3_k127_5263054_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases K00657,K03825 - 2.3.1.57 0.00000003397 67.0
LYD3_k127_5263054_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K05551 - 2.3.1.235,2.3.1.260 0.0000595 55.0
LYD3_k127_5265026_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006579 316.0
LYD3_k127_5265026_1 phosphoenolpyruvate-dependent sugar phosphotransferase system K02768,K02769,K02770,K02806 - 2.7.1.202 0.0000000000000000000000000000000000000002976 159.0
LYD3_k127_5265026_2 NUDIX hydrolase - - - 0.00000000000000000000000000001132 120.0
LYD3_k127_5265026_3 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.0000000000000000000000005551 115.0
LYD3_k127_5265026_4 - - - - 0.000000000000000001322 93.0
LYD3_k127_5268728_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 516.0
LYD3_k127_5268728_1 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007356 322.0
LYD3_k127_5268728_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000001215 192.0
LYD3_k127_5268728_3 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000000000000000000004591 181.0
LYD3_k127_5268728_4 Belongs to the peptidase S1C family K04772 - - 0.00000005767 57.0
LYD3_k127_527201_0 Homologues of snake disintegrins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 467.0
LYD3_k127_527201_1 CAAX prenyl protease N-terminal, five membrane helices - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 433.0
LYD3_k127_527201_2 Glycosyl hydrolases family 6 K19668 - 3.2.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 349.0
LYD3_k127_527201_3 Belongs to the DegT DnrJ EryC1 family K18653 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009987,GO:0016740,GO:0016769,GO:0016999,GO:0017000,GO:0017144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003966 311.0
LYD3_k127_527201_4 Family membership - - - 0.0000000000000000000000000000000000000000000000003209 196.0
LYD3_k127_527201_5 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.00000006748 65.0
LYD3_k127_527201_6 Low-density lipoprotein receptor domain class A - - - 0.00003509 55.0
LYD3_k127_52750_0 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000006874 153.0
LYD3_k127_52750_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000005374 125.0
LYD3_k127_5287469_0 DHH family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 297.0
LYD3_k127_5287469_1 - - - - 0.00000000000000000000000000000000000000000000000000186 193.0
LYD3_k127_5290762_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 1.508e-209 677.0
LYD3_k127_5290762_1 Alpha-L-fucosidase K01206 - 3.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 450.0
LYD3_k127_5290762_10 PFAM glycosyl transferase family 39 K00728 - 2.4.1.109 0.0000000000000000004521 100.0
LYD3_k127_5290762_2 PFAM glycoside hydrolase, family 10 K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 341.0
LYD3_k127_5290762_3 Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P) K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 329.0
LYD3_k127_5290762_4 nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 317.0
LYD3_k127_5290762_5 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 305.0
LYD3_k127_5290762_6 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002219 257.0
LYD3_k127_5290762_7 PFAM peptidase S8 and S53, subtilisin, kexin, sedolisin - - - 0.000000000000000000000000000000000000000008076 172.0
LYD3_k127_5290762_8 - - - - 0.0000000000000000000000000000000000176 153.0
LYD3_k127_5296049_0 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008976 262.0
LYD3_k127_5296049_1 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000005621 218.0
LYD3_k127_5296049_2 Appr-1-p processing domain protein - - - 0.0000000000000000000000000000000000002672 147.0
LYD3_k127_5296329_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006401,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019439,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008634 273.0
LYD3_k127_5296329_1 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000366 191.0
LYD3_k127_5296329_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000001235 124.0
LYD3_k127_5296329_3 PFAM S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000008817 89.0
LYD3_k127_5296329_4 - - - - 0.000000003589 66.0
LYD3_k127_5296329_5 domain, Protein - - - 0.000000003594 68.0
LYD3_k127_5297328_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 509.0
LYD3_k127_5297328_1 dTDP-4-dehydrorhamnose 3,5-epimerase activity K19068 - 1.1.1.367 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000939 388.0
LYD3_k127_5297328_2 chromate transport K07240 - - 0.0000000000000000000000000000000002656 137.0
LYD3_k127_5301335_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005575 399.0
LYD3_k127_5301335_1 Short-chain dehydrogenase reductase Sdr - - - 0.0000000000002185 76.0
LYD3_k127_5306960_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000001599 251.0
LYD3_k127_5306960_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000379 240.0
LYD3_k127_5306960_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K00556,K03218,K03437 - 2.1.1.185,2.1.1.34 0.00000000000000000000000000000000000000000000000000004247 192.0
LYD3_k127_5306960_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000001202 163.0
LYD3_k127_5306960_4 - - - - 0.0000000000000000000000003452 111.0
LYD3_k127_5306960_5 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000005165 98.0
LYD3_k127_5306960_6 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000006072 76.0
LYD3_k127_5306960_8 - - - - 0.000000008938 64.0
LYD3_k127_5309541_0 Regulator of chromosome condensation (RCC1) repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 470.0
LYD3_k127_5309541_1 Integrase - - - 0.000000000002366 72.0
LYD3_k127_5309541_2 COG0553 Superfamily II DNA RNA - - - 0.0003293 49.0
LYD3_k127_5321339_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 401.0
LYD3_k127_5321339_1 regulation of RNA biosynthetic process - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 295.0
LYD3_k127_5321339_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008166 267.0
LYD3_k127_5321339_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001555 258.0
LYD3_k127_5321339_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.00000000000000000000000000000000000004065 150.0
LYD3_k127_5321339_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000001625 145.0
LYD3_k127_5321339_6 - - - - 0.000000000000000000299 100.0
LYD3_k127_5326234_0 Glycosyl hydrolases family 2, TIM barrel domain K01190 - 3.2.1.23 4.025e-220 708.0
LYD3_k127_5326234_1 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000006493 132.0
LYD3_k127_5326234_2 Domain of unknown function (DUF4982) K01190 - 3.2.1.23 0.000001657 51.0
LYD3_k127_532828_0 Belongs to the glycosyl hydrolase 31 family K01811 GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0010383,GO:0010410,GO:0010411,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044419,GO:0051704,GO:0071554,GO:0071704,GO:0085030,GO:1901575,GO:2000895,GO:2000899 3.2.1.177 2.398e-224 713.0
LYD3_k127_532828_1 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000001891 162.0
LYD3_k127_534440_0 Protein of unknown function (DUF763) K09003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 491.0
LYD3_k127_534440_1 oxidoreductase activity K07114 - - 0.00000000000000004444 89.0
LYD3_k127_534440_2 - - - - 0.000000000001598 75.0
LYD3_k127_5354561_0 Heterodisulfide reductase subunit A and related polyferredoxins K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007408 507.0
LYD3_k127_5354561_1 Heterodisulfide reductase subunit A and related polyferredoxins K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 466.0
LYD3_k127_5354561_2 4Fe-4S dicluster domain K16887 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 303.0
LYD3_k127_5354561_3 PFAM methyl-viologen-reducing hydrogenase delta subunit K14127 - 1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000001043 215.0
LYD3_k127_5354561_4 histidine kinase, dimerisation and phosphoacceptor region - - - 0.00000000000000000000000002524 118.0
LYD3_k127_5357484_0 Von Willebrand factor type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 574.0
LYD3_k127_5357484_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 545.0
LYD3_k127_5357484_2 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006559 302.0
LYD3_k127_5357484_3 Two component regulator propeller - - - 0.000000000001714 81.0
LYD3_k127_5380095_0 - - - - 0.00000000000000000000000000000006638 145.0
LYD3_k127_5380095_1 EamA-like transporter family - - - 0.0000000000000009008 88.0
LYD3_k127_5385661_0 NUBPL iron-transfer P-loop NTPase K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 309.0
LYD3_k127_5385661_1 Belongs to the N(4) N(6)-methyltransferase family K00590 - 2.1.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005015 281.0
LYD3_k127_5385661_2 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001306 284.0
LYD3_k127_5385661_3 endonuclease III K07457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008424 243.0
LYD3_k127_5385661_4 Belongs to the ompA family K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000003137 228.0
LYD3_k127_5385661_5 - - - - 0.0000000000000005615 80.0
LYD3_k127_5385661_6 S-acyltransferase activity - - - 0.0000000000001584 83.0
LYD3_k127_5385661_9 - - - - 0.000233 54.0
LYD3_k127_5395741_0 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 342.0
LYD3_k127_5397780_0 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009536 262.0
LYD3_k127_5397780_1 Integrase core domain - - - 0.0000000000000000004368 90.0
LYD3_k127_5397780_2 Protein of unknown function (DUF2442) - - - 0.00000000000000001667 87.0
LYD3_k127_5397780_3 Amino acid permease - - - 0.0000000000001841 72.0
LYD3_k127_5397780_4 phage envelope protein - - - 0.0000000001344 72.0
LYD3_k127_5397780_5 Transposase - - - 0.00001948 55.0
LYD3_k127_5397780_6 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00002191 47.0
LYD3_k127_5398028_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1137.0
LYD3_k127_5398028_1 Rad51 K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 525.0
LYD3_k127_5398028_2 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 306.0
LYD3_k127_5398028_3 Peptidase family M1 domain K01256,K08776 - 3.4.11.2 0.00000003916 61.0
LYD3_k127_540082_0 type IV pilus secretin PilQ K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 536.0
LYD3_k127_540082_1 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 422.0
LYD3_k127_540082_2 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006576 389.0
LYD3_k127_540082_3 Fimbrial assembly protein (PilN) K02663 - - 0.0000000000000000000000005698 116.0
LYD3_k127_540082_4 Pilus assembly protein, PilO K02664 - - 0.00000000000124 75.0
LYD3_k127_540082_5 Pilus assembly protein, PilP K02665 - - 0.00000000005534 73.0
LYD3_k127_540082_6 Roadblock/LC7 domain - - - 0.0002152 45.0
LYD3_k127_5414863_0 COGs COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000001103 231.0
LYD3_k127_5417272_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00334,K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 584.0
LYD3_k127_5417272_1 PFAM glycosyl transferase family 51 K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009119 588.0
LYD3_k127_5417272_10 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000101 74.0
LYD3_k127_5417272_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 336.0
LYD3_k127_5417272_3 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 312.0
LYD3_k127_5417272_4 Family membership - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004076 285.0
LYD3_k127_5417272_5 Methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000002245 191.0
LYD3_k127_5417272_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000003656 184.0
LYD3_k127_5417272_7 - - - - 0.00000000000000000000000000000000009304 151.0
LYD3_k127_5417272_8 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000002898 118.0
LYD3_k127_5417272_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000703 83.0
LYD3_k127_5425184_0 Belongs to the serpin family K13963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 352.0
LYD3_k127_5425184_1 Type VI secretion system, VipA, VC_A0107 or Hcp2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000003588 250.0
LYD3_k127_5425184_3 Belongs to the thioredoxin family K03671,K03672 - 1.8.1.8 0.00000000000000000000000000000000000000006517 156.0
LYD3_k127_5425184_4 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000001641 101.0
LYD3_k127_5425184_5 Protein of unknown function (DUF2892) - - - 0.0000000002887 70.0
LYD3_k127_5425184_6 - - - - 0.000000005254 61.0
LYD3_k127_5428839_0 High confidence in function and specificity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003078 595.0
LYD3_k127_5428839_1 23S rRNA-intervening sequence protein - - - 0.00002982 53.0
LYD3_k127_5430095_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000001285 278.0
LYD3_k127_5430095_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000002248 94.0
LYD3_k127_5430095_3 domain protein K20276 - - 0.0006828 53.0
LYD3_k127_5431996_0 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 346.0
LYD3_k127_5431996_1 ABC-type transport system involved in multi-copper enzyme maturation permease component K19341 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001969 270.0
LYD3_k127_5431996_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001063 244.0
LYD3_k127_5431996_3 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000003889 179.0
LYD3_k127_5432958_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448 589.0
LYD3_k127_5432958_1 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001047 249.0
LYD3_k127_5432958_2 MerR, DNA binding K19591 - - 0.000000000000000000000000000000000000002228 152.0
LYD3_k127_5432958_3 cyclic nucleotide-binding - - - 0.00000000002605 74.0
LYD3_k127_5432958_4 cyclic nucleotide-binding K10914 - - 0.0005702 50.0
LYD3_k127_5435531_0 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 348.0
LYD3_k127_5435531_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 305.0
LYD3_k127_5435531_2 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003276 289.0
LYD3_k127_5435531_3 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005186 287.0
LYD3_k127_5435531_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006957 285.0
LYD3_k127_5435531_5 Pyruvate phosphate dikinase - - - 0.00000000000000000000000000000000000000000000001074 179.0
LYD3_k127_5435531_6 Domain of Unknown Function (DUF1259) - - - 0.000000000000002187 81.0
LYD3_k127_5435531_7 Photosynthesis system II assembly factor YCF48 - - - 0.000009383 59.0
LYD3_k127_5435531_8 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00002008 57.0
LYD3_k127_544308_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001607 286.0
LYD3_k127_544308_1 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000003485 217.0
LYD3_k127_544308_2 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 0.00001587 49.0
LYD3_k127_545024_0 TIGRFAM tungstate ABC transporter binding protein WtpA K15495 - - 0.000000000000000000000000000000000000000000000000001037 196.0
LYD3_k127_5454336_0 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000007324 200.0
LYD3_k127_5454336_1 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.0000000000000000000000000000006637 138.0
LYD3_k127_5454336_2 Tetratricopeptide repeat - - - 0.0000000004044 72.0
LYD3_k127_5455370_0 IMG reference gene - - - 0.000000000000000000000000000000000000000000000000000000000000006302 239.0
LYD3_k127_5455370_2 Histidine kinase K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000001357 205.0
LYD3_k127_5455370_4 Long-chain fatty acid transport protein K06076 - - 0.000000000000000004408 97.0
LYD3_k127_5455370_5 methyltransferase activity K00569 - 2.1.1.67 0.0000000001828 65.0
LYD3_k127_5460403_0 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 421.0
LYD3_k127_5460403_1 MatE K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 357.0
LYD3_k127_5460403_2 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004509 278.0
LYD3_k127_5460403_3 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000001176 244.0
LYD3_k127_5460403_4 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000009464 212.0
LYD3_k127_5460403_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000001154 194.0
LYD3_k127_5460403_6 Dockerin type I repeat - - - 0.000000000000000000000000000000000000000000000000001678 196.0
LYD3_k127_5460403_7 PA14 domain - - - 0.000000000000000000000000000000000000000000000000119 200.0
LYD3_k127_5460403_8 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.0000000000000000001745 91.0
LYD3_k127_5460403_9 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.000000006133 63.0
LYD3_k127_5462352_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008621 474.0
LYD3_k127_5462352_1 PA14 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 304.0
LYD3_k127_5462352_2 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003096 270.0
LYD3_k127_5462352_3 Esterase, phb depolymerase family K03932 - - 0.000000000000000000000000000000000000000000000000000000001093 219.0
LYD3_k127_5462352_4 ABC transporter K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000006962 191.0
LYD3_k127_5462352_5 ABC-type transport system involved in cytochrome c biogenesis permease component K02194 - - 0.000000000000000000000000007966 124.0
LYD3_k127_5462352_6 sequence-specific DNA binding K02099,K13529,K15051 - 3.2.2.21 0.000000000000000126 92.0
LYD3_k127_5462352_7 multi-organism process K20628 GO:0001871,GO:0003674,GO:0005488,GO:0008150,GO:0009653,GO:0030246,GO:0030247,GO:0030248,GO:0030587,GO:0031150,GO:0031153,GO:0031154,GO:0031288,GO:0032502,GO:0036360,GO:0048856,GO:0051703,GO:0051704,GO:0090702,GO:0099120 - 0.0000009178 61.0
LYD3_k127_5462352_8 GGDEF family - - - 0.000003708 59.0
LYD3_k127_5462554_0 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 309.0
LYD3_k127_5462554_1 cobalamin binding K03496,K22491 - - 0.000000000000000000000000000000000000000000000001035 184.0
LYD3_k127_5462554_2 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00000000000000000000000000000000007507 149.0
LYD3_k127_546508_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005492 493.0
LYD3_k127_546508_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008854 417.0
LYD3_k127_546508_2 Protein of unknown function (DUF1015) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009193 337.0
LYD3_k127_546508_3 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 291.0
LYD3_k127_546508_4 MazG nucleotide pyrophosphohydrolase domain K02499,K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000006052 255.0
LYD3_k127_546508_5 Methyltransferase small domain - - - 0.0000000000000000000000000000000000000002466 160.0
LYD3_k127_546508_6 Phosphatidylglycerophosphatase A K01095 - 3.1.3.27 0.00000000000000000000000003401 113.0
LYD3_k127_5471394_0 negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment - - - 0.000000000000000000000000000000000000000000000000002431 205.0
LYD3_k127_5471394_1 Sigma-70 region 2 K03088 - - 0.000000000004423 69.0
LYD3_k127_5480074_0 Belongs to the glycosyl hydrolase 11 (cellulase G) family K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000001047 270.0
LYD3_k127_5480074_1 Alpha/beta hydrolase family K07020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001461 244.0
LYD3_k127_5483056_0 Enoyl-(Acyl carrier protein) reductase K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 352.0
LYD3_k127_5483056_1 enzyme involved in inositol metabolism K03337 - 5.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001041 286.0
LYD3_k127_5483056_2 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000000000000000139 106.0
LYD3_k127_5483056_3 Domain of unknown function (DUF4861) K01051 - 3.1.1.11 0.00000000000000004958 94.0
LYD3_k127_5483056_4 Dual specificity phosphatase, catalytic domain - - - 0.000000000000005388 78.0
LYD3_k127_5483056_5 - - - - 0.000000002338 67.0
LYD3_k127_5504776_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 317.0
LYD3_k127_5504776_1 Male sterility protein K01710,K01784 - 4.2.1.46,5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000009484 246.0
LYD3_k127_5504776_2 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000002196 209.0
LYD3_k127_5504776_3 - - - - 0.00000000000000000005275 104.0
LYD3_k127_5504776_4 Tetratricopeptide repeat - - - 0.0000000000000000001784 96.0
LYD3_k127_5515077_0 Required for chromosome condensation and partitioning K03529 - - 6.483e-232 762.0
LYD3_k127_5515077_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 608.0
LYD3_k127_5515077_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 386.0
LYD3_k127_5515077_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000001098 216.0
LYD3_k127_5515077_4 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000001563 155.0
LYD3_k127_5515077_5 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769,K03770 - 5.2.1.8 0.00000001645 66.0
LYD3_k127_5534125_0 xylan catabolic process K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008613 413.0
LYD3_k127_5534125_1 Esterase, phb depolymerase family K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002922 297.0
LYD3_k127_5534125_2 protein kinase activity - - - 0.000000000000000000000000000000000000000002487 163.0
LYD3_k127_5534125_3 PFAM Sulphatase-modifying factor - - - 0.00000002372 65.0
LYD3_k127_5535901_0 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 344.0
LYD3_k127_5535901_1 Outer membrane efflux protein K12340 - - 0.000000000000000000000000000000000000000000000000000000000000002587 235.0
LYD3_k127_5535901_2 Spore coat - - - 0.000000000000000000000000000000000000000000000000000001186 214.0
LYD3_k127_5545754_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 432.0
LYD3_k127_5545754_1 Beta-xylanase K01181 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 377.0
LYD3_k127_5545754_2 alpha-galactosidase K07407 - 3.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009045 310.0
LYD3_k127_5545754_3 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000002303 168.0
LYD3_k127_5545754_4 depolymerase K03932 - - 0.00000000000003127 76.0
LYD3_k127_555214_0 Carbohydrate-selective porin, OprB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 591.0
LYD3_k127_555214_1 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000001511 245.0
LYD3_k127_555214_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000005387 179.0
LYD3_k127_555214_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000005761 167.0
LYD3_k127_555596_0 Glycosyl hydrolases family 8 K15531 - 3.2.1.156 0.00000000000000000000000000000000000000000000000000000000000002025 234.0
LYD3_k127_555596_1 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.0000000000000000000000000000000000000000000000000000000001322 223.0
LYD3_k127_555596_3 - - - - 0.000000000000000000000000000000000001402 146.0
LYD3_k127_555596_4 iron ion homeostasis - - - 0.0000000000001197 79.0
LYD3_k127_5557034_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 564.0
LYD3_k127_5557034_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006016 573.0
LYD3_k127_5557034_2 Glycosyl hydrolase family 62 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 387.0
LYD3_k127_5557034_3 - - - - 0.00000000000000000000000000000001524 132.0
LYD3_k127_5557034_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000009479 83.0
LYD3_k127_5557034_5 DnaJ molecular chaperone homology domain - - - 0.00000008695 57.0
LYD3_k127_5564165_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 416.0
LYD3_k127_5564165_1 Tetratricopeptide repeat - - - 0.000001243 56.0
LYD3_k127_5570485_0 Cytochrome c3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 384.0
LYD3_k127_5570485_1 formate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 333.0
LYD3_k127_5570485_2 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001668 263.0
LYD3_k127_5570485_3 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000001128 246.0
LYD3_k127_5570485_4 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000003225 144.0
LYD3_k127_5570485_5 Cytochrome c bacterial - - - 0.00000000000000001718 85.0
LYD3_k127_5570485_6 tRNA methyltransferase complex GCD14 subunit - - - 0.000000000003587 68.0
LYD3_k127_5581722_0 topoisomerase K02469 - 5.99.1.3 8.919e-302 945.0
LYD3_k127_5581722_1 COG0187 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02470,K02622 - 5.99.1.3 1.859e-237 749.0
LYD3_k127_5581722_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 2.091e-206 664.0
LYD3_k127_5581722_3 deaminase K01493 - 3.5.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000001479 242.0
LYD3_k127_5581722_4 Bacterial protein of unknown function (DUF882) - - - 0.0000000000000000000000000000000000000000000000001747 185.0
LYD3_k127_5585356_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K01147,K12573 - 3.1.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 305.0
LYD3_k127_5585356_1 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000003858 169.0
LYD3_k127_5590445_0 glycosyl transferase family K00697 - 2.4.1.15,2.4.1.347 1.346e-277 873.0
LYD3_k127_5590445_1 Belongs to the glycosyl hydrolase 31 family K07407 - 3.2.1.22 1.062e-242 766.0
LYD3_k127_5590445_2 A-macroglobulin complement component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008942 339.0
LYD3_k127_5590445_3 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.0000000000000009369 92.0
LYD3_k127_5594854_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009578 504.0
LYD3_k127_5594854_1 TIGRFAM acyl-CoA thioester hydrolase, YbgC YbaW family K07107 - - 0.0000000000000000000000000000000000000000002433 177.0
LYD3_k127_5594854_2 cellulose binding - - - 0.00000000000000000000000009948 120.0
LYD3_k127_5594854_3 Polyketide synthase dehydratase - - - 0.0000000000000000000000004127 120.0
LYD3_k127_5594854_4 - - - - 0.000000000004278 76.0
LYD3_k127_5594854_5 dehydratase - - - 0.000000003583 63.0
LYD3_k127_5595022_0 ABC transporter K15738 - - 0.0000000000006812 72.0
LYD3_k127_5595022_1 domain, Protein - - - 0.0000001922 63.0
LYD3_k127_5595022_2 Transposase - - - 0.000001693 57.0
LYD3_k127_5599136_0 Bacterial membrane protein YfhO - - - 0.0000000000000000000000000005193 128.0
LYD3_k127_5611538_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000001231 218.0
LYD3_k127_5611538_1 Metallo-beta-lactamase superfamily K02238 - - 0.000000000000000000000000000000000000000000009668 172.0
LYD3_k127_5618884_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 2.899e-238 750.0
LYD3_k127_5618884_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 509.0
LYD3_k127_5624834_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 451.0
LYD3_k127_5624834_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 429.0
LYD3_k127_5624834_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.000000000000000000000000000000000000000000000000000208 195.0
LYD3_k127_5624981_0 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009875 250.0
LYD3_k127_5624981_1 Nudix hydrolase K03574 - 3.6.1.55 0.00000000000000000000000000000003977 134.0
LYD3_k127_5624981_2 cheY-homologous receiver domain - - - 0.000000000000000007002 89.0
LYD3_k127_5626339_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 371.0
LYD3_k127_5626339_1 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003518 290.0
LYD3_k127_5638799_0 HAMP domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 368.0
LYD3_k127_5638799_1 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000623 151.0
LYD3_k127_5638799_2 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000216 123.0
LYD3_k127_5638799_3 LTXXQ motif family protein - - - 0.000000000000000001855 96.0
LYD3_k127_5638799_4 cheY-homologous receiver domain - - - 0.0000000000000113 79.0
LYD3_k127_5645975_0 AMP-binding enzyme C-terminal domain K22319 - 6.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 395.0
LYD3_k127_5645975_1 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009309 380.0
LYD3_k127_5645975_2 TatD family K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001377 276.0
LYD3_k127_5645975_3 Cell division protein FtsI penicillin-binding protein 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005848 252.0
LYD3_k127_5645975_4 PFAM UbiA prenyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002638 243.0
LYD3_k127_5645975_5 RNA polymerase sigma factor K03088 - - 0.0000000000000000000000000000000000000000003354 166.0
LYD3_k127_5645975_6 cell adhesion involved in biofilm formation - - - 0.0000000000000000003021 102.0
LYD3_k127_5645975_8 Calcium ion binding - GO:0002009,GO:0002165,GO:0003674,GO:0005198,GO:0005201,GO:0005575,GO:0005576,GO:0007275,GO:0007424,GO:0007444,GO:0007472,GO:0007475,GO:0007476,GO:0007552,GO:0007560,GO:0007591,GO:0008150,GO:0008362,GO:0008587,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0022404,GO:0031012,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040003,GO:0040005,GO:0042303,GO:0042335,GO:0044421,GO:0044719,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0060429,GO:0060541,GO:0060562,GO:0065007,GO:0065008,GO:0090066 - 0.0005025 51.0
LYD3_k127_5658892_0 Belongs to the GPI family K01810 - 5.3.1.9 1.23e-267 827.0
LYD3_k127_5658892_1 fructose-bisphosphate aldolase K01623 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003616 436.0
LYD3_k127_5658892_2 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000001204 90.0
LYD3_k127_5660386_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.683e-292 910.0
LYD3_k127_5660386_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02652 - - 4.666e-238 753.0
LYD3_k127_5660386_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 331.0
LYD3_k127_5660386_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001216 264.0
LYD3_k127_5660386_4 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000001162 153.0
LYD3_k127_5660386_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000007322 124.0
LYD3_k127_5660386_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000447 42.0
LYD3_k127_5663048_0 ferredoxin-NADP+ reductase activity K00384,K03671 GO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004791,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0008152,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0019725,GO:0036094,GO:0036293,GO:0040007,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0048037,GO:0050660,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070402,GO:0070482,GO:0070887,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901265,GO:1901363,GO:1990748 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 386.0
LYD3_k127_5663048_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004328 344.0
LYD3_k127_5663048_2 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000005708 81.0
LYD3_k127_5663048_4 Cysteine rich repeat - - - 0.0000665 55.0
LYD3_k127_5670514_0 sensory perception of sound - - - 0.00000000000000000003245 102.0
LYD3_k127_5678707_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 338.0
LYD3_k127_5678707_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000001175 236.0
LYD3_k127_5678707_2 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000474 154.0
LYD3_k127_5678707_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000153 145.0
LYD3_k127_5678707_4 Helix-turn-helix domain - - - 0.0000000006226 62.0
LYD3_k127_567928_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 0.0 1206.0
LYD3_k127_567928_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009517 401.0
LYD3_k127_567928_2 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000001109 212.0
LYD3_k127_567928_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000003239 162.0
LYD3_k127_5695893_0 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 352.0
LYD3_k127_5695893_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000003617 261.0
LYD3_k127_5695893_2 SIS domain K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000002766 208.0
LYD3_k127_5695893_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000007377 106.0
LYD3_k127_5695893_4 RNA-binding - - - 0.00000000000000008707 82.0
LYD3_k127_5707868_0 Rieske [2Fe-2S] domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002634 426.0
LYD3_k127_5707868_1 pilus organization - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 337.0
LYD3_k127_5707868_2 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004585 314.0
LYD3_k127_5707868_3 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000002361 169.0
LYD3_k127_5707868_4 Transglycosylase associated protein - - - 0.0000000000000000000000001817 108.0
LYD3_k127_5707868_5 sodium ion export across plasma membrane - - - 0.0000000000000000005031 96.0
LYD3_k127_5707868_6 COG0665 Glycine D-amino acid oxidases (deaminating) - - - 0.00000000000003162 83.0
LYD3_k127_5707868_7 Peptidoglycan-binding domain 1 protein - - - 0.0000000000241 70.0
LYD3_k127_5707868_8 CHAP domain - - - 0.0000004661 61.0
LYD3_k127_5707868_9 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0003158 49.0
LYD3_k127_5713647_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003167 364.0
LYD3_k127_5713647_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000007775 211.0
LYD3_k127_5713647_2 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000003853 206.0
LYD3_k127_5713647_3 xylan catabolic process K03932 - - 0.0000000000000000000000000000000000000000000000000001464 202.0
LYD3_k127_5713647_4 CHAP domain - - - 0.00000000000000001341 93.0
LYD3_k127_5724942_0 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 357.0
LYD3_k127_5724942_1 Biotin-protein ligase, N terminal - - - 0.00000000000000000000000000000007213 134.0
LYD3_k127_5724942_2 - - - - 0.00000000000000002242 89.0
LYD3_k127_5742885_0 Poly(3-hydroxybutyrate) depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001443 276.0
LYD3_k127_5742885_1 Glycosyl hydrolases family 43 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001021 271.0
LYD3_k127_5742885_2 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000001881 241.0
LYD3_k127_575008_0 DNA helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004882 567.0
LYD3_k127_575008_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993,K02022,K03585 - - 0.000000000003767 80.0
LYD3_k127_575008_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000003713 61.0
LYD3_k127_5752301_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 419.0
LYD3_k127_5752301_1 NAD(P)H dehydrogenase (quinone) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000436 265.0
LYD3_k127_5752301_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000002408 226.0
LYD3_k127_5752301_3 Uncharacterized conserved protein (DUF2293) - - - 0.000000000000000000000000000000000000000000000000000000003668 207.0
LYD3_k127_5752301_4 Putative heavy-metal-binding - - - 0.00000000000000000000001046 106.0
LYD3_k127_5758048_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 373.0
LYD3_k127_5758048_1 Type III restriction enzyme, res subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 325.0
LYD3_k127_5758048_2 malic protein domain protein K00027,K00029 - 1.1.1.38,1.1.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000005875 256.0
LYD3_k127_5758048_3 FMN binding - - - 0.000000000000000000000000000000000000000006871 158.0
LYD3_k127_5758048_4 TNFR/NGFR cysteine-rich region K14965 - - 0.0000000000000000000000000000000000000000143 175.0
LYD3_k127_5758048_5 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000001824 155.0
LYD3_k127_5758048_6 Protein of unknown function (DUF790) K09744 - - 0.00000000000000000000000000000003896 142.0
LYD3_k127_5758048_7 Kazal type serine protease inhibitors - - - 0.0000000000000000000005369 109.0
LYD3_k127_576062_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 406.0
LYD3_k127_576062_1 Trehalose utilisation - - - 0.00000000000000000000000000000000000000000000000000000000000000000001833 244.0
LYD3_k127_576062_2 PFAM glycosyl hydrolase family 88 K15532 - 3.2.1.172 0.0000000000000000000000000000000000000000000000000000000000000000171 241.0
LYD3_k127_5763604_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 460.0
LYD3_k127_5763604_1 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000001045 164.0
LYD3_k127_5765475_0 Putative transposase of IS4/5 family (DUF4096) - - - 0.0000000000000000000000000000000000000000000005419 169.0
LYD3_k127_5765475_1 COG0421 Spermidine synthase - - - 0.000000000000000000000000000000000000002543 162.0
LYD3_k127_5765475_2 similarity to GB AAN56270.1 - - - 0.00000000000000000001008 106.0
LYD3_k127_5765475_3 NAD dependent epimerase/dehydratase family K19068 - 1.1.1.367 0.00000000001342 74.0
LYD3_k127_5765475_4 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.000008044 52.0
LYD3_k127_5770850_0 Belongs to the glycosyl hydrolase family 6 K01181,K09955 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 340.0
LYD3_k127_5770850_1 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000000000000000001857 218.0
LYD3_k127_5770850_2 Beta-L-arabinofuranosidase, GH127 K09955 - - 0.000000000000000000000000000000000000000000000000001128 192.0
LYD3_k127_5776409_0 PFAM transposase IS204 IS1001 IS1096 IS1165 family protein - - - 0.0000000000000000000000000000000000000000000000000000009941 209.0
LYD3_k127_5776409_1 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000001153 100.0
LYD3_k127_5781737_0 FIST N domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005388 325.0
LYD3_k127_5781737_1 Pectate lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000007713 231.0
LYD3_k127_5781737_2 cellulose-binding family ii - - - 0.00000000000000000000000000000000000000000001064 174.0
LYD3_k127_5781737_3 Histidine kinase-like ATPases - - - 0.00005811 52.0
LYD3_k127_5783230_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000005877 244.0
LYD3_k127_5783230_1 PFAM glycoside hydrolase family 39 K01198 - 3.2.1.37 0.000000000000000000000000000000000000000000000000005722 205.0
LYD3_k127_5787907_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000001043 274.0
LYD3_k127_5787907_1 Protein of unknown function (DUF1232) - - - 0.0000000000000000000000000000002412 131.0
LYD3_k127_5787907_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000002426 125.0
LYD3_k127_5787907_3 PilZ domain - - - 0.00000001815 66.0
LYD3_k127_5787907_4 SEC-C Motif Domain Protein - - - 0.0000002183 61.0
LYD3_k127_5788434_0 RelA SpoT domain protein - - - 0.00000000000000000000000000000000000000000000000000000000001041 220.0
LYD3_k127_5797224_0 Lysin motif K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 461.0
LYD3_k127_5797224_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 383.0
LYD3_k127_5797224_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000002163 192.0
LYD3_k127_5797224_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000007206 70.0
LYD3_k127_5797224_4 Ami_3 K01448 - 3.5.1.28 0.0000004005 51.0
LYD3_k127_5818998_0 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 551.0
LYD3_k127_5818998_1 HAMP domain K11383 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 407.0
LYD3_k127_5818998_2 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.00000000000000000000000000000000000000000000000001068 182.0
LYD3_k127_5818998_3 Bacterial membrane protein, YfhO - - - 0.0000001057 63.0
LYD3_k127_5818998_4 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000007609 61.0
LYD3_k127_5818998_5 Belongs to the glycosyl hydrolase 30 family - - - 0.000001096 54.0
LYD3_k127_5821671_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 449.0
LYD3_k127_5821671_1 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005752 345.0
LYD3_k127_5821671_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002749 251.0
LYD3_k127_5821671_3 Roadblock/LC7 domain - - - 0.0000000000000000000000000000000000000000000000000000004288 198.0
LYD3_k127_5822077_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 4.41e-228 716.0
LYD3_k127_5822077_1 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009046 405.0
LYD3_k127_5822077_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000001856 213.0
LYD3_k127_5833753_0 TIGRFAM decaheme c-type cytochrome, OmcA MtrC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006954 596.0
LYD3_k127_5837305_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 405.0
LYD3_k127_5837305_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000328 270.0
LYD3_k127_5837305_2 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000003901 200.0
LYD3_k127_5837305_3 Formyl transferase K11175 - 2.1.2.2 0.0000002607 63.0
LYD3_k127_5837382_0 Iron hydrogenase small subunit K00123,K00336,K18332 - 1.12.1.3,1.17.1.9,1.6.5.3 1.543e-233 735.0
LYD3_k127_5837382_1 Putative Fe-S cluster K02482 - 2.7.13.3 4.339e-201 647.0
LYD3_k127_5837382_2 Biotin and Thiamin Synthesis associated domain K03150 - 4.1.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008525 612.0
LYD3_k127_5837382_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K18331 - 1.12.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 369.0
LYD3_k127_5837382_4 protein histidine kinase activity K02484,K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005355 335.0
LYD3_k127_5837382_5 response regulator, receiver - - - 0.0000000000000000000000005137 119.0
LYD3_k127_5838020_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 495.0
LYD3_k127_5838020_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005746 484.0
LYD3_k127_5838020_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007855 357.0
LYD3_k127_5838020_3 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001007 280.0
LYD3_k127_5838020_4 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000005787 190.0
LYD3_k127_5838020_5 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000000000004403 158.0
LYD3_k127_5838020_6 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000001016 146.0
LYD3_k127_5838020_7 COG2893 Phosphotransferase system, mannose fructose-specific component IIA K02793 - 2.7.1.191 0.00000000000000000005422 98.0
LYD3_k127_5838020_8 PTS HPr component phosphorylation site K11189 - - 0.000000000000000003782 87.0
LYD3_k127_5838298_0 MreB/Mbl protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 436.0
LYD3_k127_5838298_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000003243 231.0
LYD3_k127_5838298_2 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 0.000000000000000000000000000000000003345 139.0
LYD3_k127_5838298_3 DnaJ-class molecular chaperone with C-terminal Zn finger domain - - - 0.0000000003376 68.0
LYD3_k127_58433_0 (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family) - - - 0.00000000000000000000000000000000000000000000000000000000000000001632 252.0
LYD3_k127_58433_1 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000005828 229.0
LYD3_k127_58433_2 Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04068 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000007179 192.0
LYD3_k127_58433_3 Fibronectin type III - - - 0.0000000000000000000000000000000000000000000000001568 205.0
LYD3_k127_58433_4 Cupin domain - - - 0.000000000000000000000000000000000000007366 150.0
LYD3_k127_58433_5 Carbohydrate-binding protein of the ER - - - 0.000000000000000000000000000001484 143.0
LYD3_k127_58433_6 pyrroloquinoline quinone binding - - - 0.0000000000000000000000003463 125.0
LYD3_k127_58433_7 Protein of unknown function (DUF3494) - - - 0.00000000000002465 89.0
LYD3_k127_58433_8 Protein of unknown function (DUF2997) - - - 0.0000006237 60.0
LYD3_k127_58433_9 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.000005465 61.0
LYD3_k127_5854299_0 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 436.0
LYD3_k127_5854299_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 348.0
LYD3_k127_5854299_2 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000008182 104.0
LYD3_k127_5869697_0 Bacterial extracellular solute-binding protein K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003659 461.0
LYD3_k127_5869697_1 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 339.0
LYD3_k127_5869697_2 OmpA family - - - 0.00000000000000000000000000000000000000000004342 171.0
LYD3_k127_5874870_0 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 334.0
LYD3_k127_5874870_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000001855 90.0
LYD3_k127_5874967_0 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007746 586.0
LYD3_k127_5874967_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007243 410.0
LYD3_k127_5874967_10 - - - - 0.000009081 50.0
LYD3_k127_5874967_11 Resolvase - - - 0.00001017 47.0
LYD3_k127_5874967_2 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000638 406.0
LYD3_k127_5874967_3 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 394.0
LYD3_k127_5874967_4 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 366.0
LYD3_k127_5874967_5 Belongs to the FPP GGPP synthase family K00805,K02523 - 2.5.1.30,2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003588 276.0
LYD3_k127_5874967_6 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000004234 267.0
LYD3_k127_5874967_7 Superfamily II DNA RNA helicases, SNF2 family - - - 0.00000000000000000000000000000000000000000000000007268 179.0
LYD3_k127_5874967_8 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000007266 181.0
LYD3_k127_5874967_9 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000414 167.0
LYD3_k127_5878025_0 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase K03606 - - 0.00000000000000000000000000000000000000000000000000000000001733 208.0
LYD3_k127_5878025_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000003763 198.0
LYD3_k127_5878025_2 ggdef domain - - - 0.0000000000000000000000000000000000000006752 162.0
LYD3_k127_5878329_0 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000006609 254.0
LYD3_k127_5878329_1 Ribosomal protein L19 K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000001199 154.0
LYD3_k127_5878329_2 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000002787 109.0
LYD3_k127_5878329_3 Belongs to the UPF0109 family K06960 GO:0008150,GO:0040007 - 0.0000000000000000000003212 100.0
LYD3_k127_5878329_4 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000000004431 94.0
LYD3_k127_5878329_6 ribosome binding K02860 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000009401 87.0
LYD3_k127_5878329_7 Cytochrome c554 and c-prime - - - 0.000004795 54.0
LYD3_k127_5885072_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 357.0
LYD3_k127_5885072_1 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000004672 214.0
LYD3_k127_588680_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 377.0
LYD3_k127_5889406_0 - - - - 2.949e-272 876.0
LYD3_k127_5889406_1 gag-polyprotein putative aspartyl protease - - - 0.0000003784 63.0
LYD3_k127_5889406_2 sequence-specific DNA binding - GO:0002791,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0008150,GO:0010565,GO:0019216,GO:0019217,GO:0019222,GO:0031323,GO:0032879,GO:0032880,GO:0050708,GO:0050789,GO:0050794,GO:0051046,GO:0051049,GO:0051223,GO:0062012,GO:0065007,GO:0070201,GO:0080090,GO:0090087,GO:0097159,GO:1901363,GO:1903530 - 0.00006615 51.0
LYD3_k127_5889406_3 Protein of unknown function (DUF2934) - - - 0.00009747 47.0
LYD3_k127_5890447_0 GTP-binding GTPase Middle Region K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009258 486.0
LYD3_k127_5890447_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 343.0
LYD3_k127_5890447_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000000000000000000000000005944 193.0
LYD3_k127_5890447_3 Response regulator receiver domain - - - 0.000000000000000000001939 111.0
LYD3_k127_5890447_4 Putative zinc-finger - - - 0.0000000000000000001131 103.0
LYD3_k127_5890447_5 Belongs to the frataxin family K06202 GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0016530,GO:0016722,GO:0016724,GO:0018282,GO:0018283,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0033554,GO:0034599,GO:0034986,GO:0036211,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0050896,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071840,GO:0098771,GO:0140104,GO:1901564 - 0.00000000000002437 79.0
LYD3_k127_5897035_0 CBD_II - - - 0.0000000000000001783 94.0
LYD3_k127_5903450_0 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009681 510.0
LYD3_k127_5903450_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620,K00930 - 2.3.1.1,2.3.1.35,2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004927 329.0
LYD3_k127_5903450_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145,K05829 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 313.0
LYD3_k127_5903450_3 Sulfatase - - - 0.00000000002605 66.0
LYD3_k127_5914807_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 447.0
LYD3_k127_5914807_1 Domain of unknown function DUF11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009534 406.0
LYD3_k127_5914807_2 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002818 376.0
LYD3_k127_5914807_3 PFAM Protein kinase domain - - - 0.000000000009444 76.0
LYD3_k127_59241_0 Adventurous gliding motility - - - 0.0000000000000000000000000000000000000000000000000000000000001102 218.0
LYD3_k127_592424_0 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003866 289.0
LYD3_k127_592424_1 - - - - 0.000000000000000000000000000000000000003224 162.0
LYD3_k127_592424_2 Belongs to the glycosyl hydrolase family 6 - - - 0.0000000000000000000000008537 116.0
LYD3_k127_5930104_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000281 192.0
LYD3_k127_5931303_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000001127 222.0
LYD3_k127_5931303_1 Belongs to the peptidase S11 family K07262 - - 0.000000000000000000000000000000000000007009 163.0
LYD3_k127_5931303_2 Protein of unknown function (DUF1624) - - - 0.00000000000000000000000000000004631 139.0
LYD3_k127_5931303_3 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000003339 116.0
LYD3_k127_5931303_4 adenosylhomocysteine nucleosidase activity K01243,K03784,K11783 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.4.2.1,3.2.2.26,3.2.2.9 0.000000000000007721 82.0
LYD3_k127_5937373_0 Spermine spermidine synthase K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 642.0
LYD3_k127_5937373_1 Spore coat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001871 524.0
LYD3_k127_5937373_10 CHAT domain - - - 0.0008996 43.0
LYD3_k127_5937373_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005366 389.0
LYD3_k127_5937373_3 NADP Oxidoreductase K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 319.0
LYD3_k127_5937373_4 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005314 303.0
LYD3_k127_5937373_5 PFAM bifunctional deaminase-reductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 299.0
LYD3_k127_5937373_6 xylan catabolic process K03932 - - 0.0000000000000000000002271 101.0
LYD3_k127_5937373_7 - - - - 0.000000000000000003478 86.0
LYD3_k127_5937373_8 Putative transposase - - - 0.00000000007037 64.0
LYD3_k127_5937373_9 Glycosyltransferase family 28 N-terminal domain - - - 0.0002115 47.0
LYD3_k127_5942230_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 347.0
LYD3_k127_5942230_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006836 267.0
LYD3_k127_5942230_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008279 256.0
LYD3_k127_5942230_3 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000007188 203.0
LYD3_k127_5942230_4 cell adhesion involved in biofilm formation - - - 0.000000000000000000004927 108.0
LYD3_k127_5942230_5 phosphinothricin N-acetyltransferase activity - - - 0.0001416 53.0
LYD3_k127_5948086_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.495e-267 839.0
LYD3_k127_5948086_1 iron ion homeostasis - - - 0.000000000000000000000000000000000000000000000000000002493 213.0
LYD3_k127_5948086_2 Cupin domain - - - 0.000000000000000000000000000000000000000000000000000006396 191.0
LYD3_k127_5948086_3 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000000000000000000000000000000006378 186.0
LYD3_k127_5948086_4 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000002054 164.0
LYD3_k127_5948086_6 Protein of unknown function (DUF1016) - - - 0.000000000000001233 81.0
LYD3_k127_5948086_7 Tetratricopeptide repeat - - - 0.00000000000002027 77.0
LYD3_k127_5948086_8 VIT family - - - 0.0000000000006961 72.0
LYD3_k127_5949654_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005395 526.0
LYD3_k127_5949654_1 peptidoglycan biosynthetic process K07121 - - 0.000000000000000000000000000000000000000000000000000001137 214.0
LYD3_k127_5949654_2 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000001003 166.0
LYD3_k127_5949654_3 - - - - 0.0000000000006429 78.0
LYD3_k127_5949654_4 Binds directly to 16S ribosomal RNA K02968 - - 0.00004461 47.0
LYD3_k127_5951274_0 Alg9-like mannosyltransferase family K05286 - - 0.0000000000000000000000000000000000000000000000000000006546 212.0
LYD3_k127_5951274_1 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000003728 129.0
LYD3_k127_5951274_2 Protein of unknown function (DUF2723) - - - 0.000000000006233 79.0
LYD3_k127_5951274_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000006703 76.0
LYD3_k127_5954242_0 PFAM Glycosyl transferase family 2 - - - 1.851e-218 689.0
LYD3_k127_5954242_1 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000000000001143 136.0
LYD3_k127_5954242_2 PEGA domain K02014 - - 0.000000000000000000000000006073 119.0
LYD3_k127_5954242_3 DinB superfamily - - - 0.000000000000000002091 93.0
LYD3_k127_5980807_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 390.0
LYD3_k127_5980807_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0000000000000000000000000000007642 124.0
LYD3_k127_5980807_2 - - - - 0.00000000000000001801 94.0
LYD3_k127_5991559_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family K01179 - 3.2.1.4 0.00001399 58.0
LYD3_k127_5999563_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000854 269.0
LYD3_k127_5999563_1 Belongs to the glycosyl hydrolase 43 family - - - 0.00000000000000000000007335 115.0
LYD3_k127_5999563_2 MFS_1 like family - - - 0.000000000000001515 87.0
LYD3_k127_6038499_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 464.0
LYD3_k127_6038499_1 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 423.0
LYD3_k127_6038499_10 Endoribonuclease that initiates mRNA decay K18682 - - 0.0003644 52.0
LYD3_k127_6038499_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000005959 166.0
LYD3_k127_6038499_3 PilZ domain - - - 0.000000000000000000003819 100.0
LYD3_k127_6038499_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000001694 92.0
LYD3_k127_6038499_5 self proteolysis - - - 0.0000000000000002005 92.0
LYD3_k127_6038499_6 - - - - 0.000000000001481 78.0
LYD3_k127_6038499_7 HEAT repeats - - - 0.000000000003839 76.0
LYD3_k127_6038499_8 phosphoglycerate kinase activity K00927 - 2.7.2.3 0.000000005107 66.0
LYD3_k127_6038499_9 CarboxypepD_reg-like domain - - - 0.0000001153 64.0
LYD3_k127_6040779_0 Rhs Element Vgr Protein K11904 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004638 454.0
LYD3_k127_6040779_1 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 371.0
LYD3_k127_6040779_10 Belongs to the ompA family - - - 0.0000001022 64.0
LYD3_k127_6040779_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000007344 217.0
LYD3_k127_6040779_4 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000006424 194.0
LYD3_k127_6040779_5 TIGRFAM Nucleotidyltransferase substrate binding protein, HI0074 - - - 0.0000000000000000000000001314 115.0
LYD3_k127_6040779_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000005057 76.0
LYD3_k127_6040779_8 EcoEI R protein C-terminal K01153 - 3.1.21.3 0.000000002693 62.0
LYD3_k127_6040779_9 Protein of unknown function (DUF445) - - - 0.000000006115 68.0
LYD3_k127_6050329_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002207 283.0
LYD3_k127_6050329_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004043 289.0
LYD3_k127_6050329_2 Sulfatase - - - 0.0000000000000000000000000000000000000000000000000000000000000001017 237.0
LYD3_k127_6050329_3 - - - - 0.000000000001197 74.0
LYD3_k127_605851_0 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005803 584.0
LYD3_k127_605851_1 Homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000001444 250.0
LYD3_k127_605851_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000000000000005977 156.0
LYD3_k127_605851_3 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000007724 135.0
LYD3_k127_605851_4 Protein of unknown function (DUF448) K07742 - - 0.000002813 54.0
LYD3_k127_6059531_0 Belongs to the HMG-CoA reductase family K00054 - 1.1.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 411.0
LYD3_k127_6059531_1 Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 - 5.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 325.0
LYD3_k127_6059531_2 Coproporphyrinogen III oxidase K00228 - 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 302.0
LYD3_k127_6059531_3 GHMP kinases N terminal domain K01597 - 4.1.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 293.0
LYD3_k127_6059531_4 mevalonate kinase K00869 - 2.7.1.36 0.000000000000000000000000000000000000002849 164.0
LYD3_k127_6059531_5 decarboxylase K01597 - 4.1.1.33 0.0000000000000000000000000000002306 141.0
LYD3_k127_6059531_6 COG1522 Transcriptional regulators - - - 0.000000000000000007554 85.0
LYD3_k127_6061026_0 Cytochrome C and Quinol oxidase polypeptide I K04561 - 1.7.2.5 1.445e-288 896.0
LYD3_k127_6061026_1 Cephalosporin hydroxylase - - - 0.000000000000000000000000000000000000000000000000001733 194.0
LYD3_k127_6061026_2 - - - - 0.000000000000000000000000000000000000000000000003009 185.0
LYD3_k127_6061026_3 PFAM Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000003454 136.0
LYD3_k127_6065017_0 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009181 555.0
LYD3_k127_6065017_1 Methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 430.0
LYD3_k127_6065017_2 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009509 392.0
LYD3_k127_6065017_3 OmpA family K02557 - - 0.000000000000000000000000000000000000000000000000000000000123 214.0
LYD3_k127_6065017_4 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000007532 187.0
LYD3_k127_6065017_6 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000002608 91.0
LYD3_k127_6065017_8 Antibiotic biosynthesis monooxygenase K11530 - 5.3.1.32 0.000005769 48.0
LYD3_k127_6066107_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.4.1.2,1.4.1.3,1.4.1.4 2.099e-197 643.0
LYD3_k127_6066107_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000036 190.0
LYD3_k127_6066107_2 PFAM macrophage migration inhibitory factor - - - 0.00000000000000000000000001413 113.0
LYD3_k127_6072518_0 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003265 260.0
LYD3_k127_6072518_1 O-methyltransferase K00588 - 2.1.1.104 0.000000000000000000000000000000000000000000000000000000000000000000006329 243.0
LYD3_k127_6072518_2 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.000000000000000000000000000000000000000000000000000000002074 207.0
LYD3_k127_6072518_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000006922 65.0
LYD3_k127_6073419_0 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007976 597.0
LYD3_k127_6073419_1 Pollen allergen - GO:0005575,GO:0005623,GO:0009986,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 456.0
LYD3_k127_6081033_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 493.0
LYD3_k127_6081033_1 Response regulator receiver K07713 - - 0.000000000000000000000000000000000000000000000000000000002514 205.0
LYD3_k127_6081033_2 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000006002 130.0
LYD3_k127_6081033_3 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000008496 130.0
LYD3_k127_6081033_4 S-layer homology domain - - - 0.000000002845 59.0
LYD3_k127_6087378_0 amino acid activation for nonribosomal peptide biosynthetic process K20276 - - 0.0000001369 60.0
LYD3_k127_6089685_0 mannose-ethanolamine phosphotransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 494.0
LYD3_k127_6089685_1 Major Facilitator Superfamily K03446 - - 0.00000000000000000001934 95.0
LYD3_k127_6089685_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.0001312 47.0
LYD3_k127_6095380_0 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 410.0
LYD3_k127_6095380_1 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006887 383.0
LYD3_k127_6095380_2 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 391.0
LYD3_k127_6095380_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009618 312.0
LYD3_k127_6095380_4 PFAM asparagine synthase K06864 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 303.0
LYD3_k127_6095380_5 Histidine kinase-like ATPases - - - 0.00000000000000000000000000001036 134.0
LYD3_k127_6095380_6 Transcriptional regulator K03655,K10439,K11708 - 3.6.4.12 0.0000000000000000000000000212 108.0
LYD3_k127_6095380_7 domain, Protein - - - 0.0000000000000000002254 98.0
LYD3_k127_6095380_8 Amb_all K01728 - 4.2.2.2 0.00000000004625 73.0
LYD3_k127_6095380_9 PFAM Polyketide cyclase dehydrase and lipid transport - - - 0.000001037 60.0
LYD3_k127_6096078_0 Putative zinc binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002299 461.0
LYD3_k127_6096078_1 glycosyl transferase group 1 K12993 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 366.0
LYD3_k127_6096078_10 ADP-glyceromanno-heptose 6-epimerase activity K01709 - 4.2.1.45 0.000002525 49.0
LYD3_k127_6096078_2 Cephalosporin hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004908 347.0
LYD3_k127_6096078_3 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 343.0
LYD3_k127_6096078_4 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003089 289.0
LYD3_k127_6096078_5 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K00067,K01790 - 1.1.1.133,5.1.3.13 0.000000000000000000000000000000000000000000000000000000000003813 219.0
LYD3_k127_6096078_6 PFAM NAD dependent epimerase dehydratase family K19180 - 1.1.1.339 0.00000000000000000000000000000000000000000000000000002354 202.0
LYD3_k127_6096078_7 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000001159 191.0
LYD3_k127_6096078_8 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000002585 189.0
LYD3_k127_6096078_9 polysaccharide biosynthetic process - - - 0.0000000000000000000000003489 121.0
LYD3_k127_6097016_0 Histidine kinase K03407,K13490 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 426.0
LYD3_k127_6097016_1 phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001964 249.0
LYD3_k127_6097016_10 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000001112 64.0
LYD3_k127_6097016_11 Two component signalling adaptor domain K03408 - - 0.00000008877 64.0
LYD3_k127_6097016_12 HD domain - - - 0.0004405 51.0
LYD3_k127_6097016_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000002049 246.0
LYD3_k127_6097016_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000007593 233.0
LYD3_k127_6097016_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000000000000000001565 182.0
LYD3_k127_6097016_5 - - - - 0.000000000000000000000007733 106.0
LYD3_k127_6097016_6 - - - - 0.00000000000000000000005177 112.0
LYD3_k127_6097016_7 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.00000000000000000000005601 114.0
LYD3_k127_6097016_8 protein heterodimerization activity - - - 0.00000000001584 69.0
LYD3_k127_6097016_9 shikimate 3-dehydrogenase (NADP+) activity K13832 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25,4.2.1.10 0.00000000006874 63.0
LYD3_k127_6099261_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 548.0
LYD3_k127_6099261_1 Protein serine threonine phosphatase K01090,K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233 300.0
LYD3_k127_6099261_2 cell adhesion involved in biofilm formation - - - 0.000000000000000000002379 108.0
LYD3_k127_611158_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001532 252.0
LYD3_k127_611566_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 307.0
LYD3_k127_611566_1 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000568 297.0
LYD3_k127_611566_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000008399 218.0
LYD3_k127_611566_3 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000002768 91.0
LYD3_k127_611566_4 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000001773 73.0
LYD3_k127_6119381_0 Putative neutral zinc metallopeptidase K07054 GO:0005575,GO:0005576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000581 291.0
LYD3_k127_6119381_1 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000003252 113.0
LYD3_k127_6119381_2 amp-dependent synthetase and ligase - - - 0.0000000000000000000001062 112.0
LYD3_k127_613426_0 Glycosyltransferase WbsX - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 471.0
LYD3_k127_613426_1 Glycosyltransferase WbsX - - - 0.0000000000000000000000000000000000000000000000000000000009248 224.0
LYD3_k127_613426_2 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000004502 207.0
LYD3_k127_613426_3 PAS fold - - - 0.0003791 49.0
LYD3_k127_6137703_0 Ricin-type beta-trefoil - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 417.0
LYD3_k127_6137703_1 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000001737 233.0
LYD3_k127_6137703_2 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000002028 236.0
LYD3_k127_6137703_3 acid phosphatase activity - - - 0.0000000000000000000000008446 119.0
LYD3_k127_6137703_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000001038 65.0
LYD3_k127_6137703_5 - - - - 0.0000004498 57.0
LYD3_k127_6137703_6 FabA-like domain - - - 0.000004558 59.0
LYD3_k127_6141651_0 Belongs to the MEMO1 family K06990 - - 0.00000468 54.0
LYD3_k127_6144776_0 Protein of unknown function (DUF3383) - - - 0.000000000000000000000000000000000000000000000000000001022 209.0
LYD3_k127_6144776_1 Protein of unknown function (DUF3277) - - - 0.00000000000000000000006264 104.0
LYD3_k127_6145200_0 Galactose oxidase, central domain - - - 0.000000000000004077 89.0
LYD3_k127_6145200_1 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0008318 51.0
LYD3_k127_6149209_0 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004721 319.0
LYD3_k127_6149209_1 xylan catabolic process K03932 - - 0.000000000000000000000000000000000000000000000000000000000000001174 234.0
LYD3_k127_6149209_2 Peptidyl-prolyl cis-trans isomerase K01802,K03773 - 5.2.1.8 0.000000007352 56.0
LYD3_k127_6158282_0 Putative restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000002185 232.0
LYD3_k127_6158282_1 PFAM LmbE family protein - - - 0.0000000000000002236 87.0
LYD3_k127_6158282_2 Nucleotidyltransferase domain K07076 - - 0.00005568 52.0
LYD3_k127_6164023_1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.000000000005613 78.0
LYD3_k127_6164023_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000001348 57.0
LYD3_k127_6171339_0 cellulose binding - - - 7.518e-214 688.0
LYD3_k127_6171339_1 cellulose binding - - - 1.601e-205 693.0
LYD3_k127_6181636_0 prohibitin homologues K07192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298 361.0
LYD3_k127_6181636_1 SPFH domain Band 7 family K07192 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001728 280.0
LYD3_k127_6181636_2 radical SAM domain protein K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000000000000000000000000000000000003479 269.0
LYD3_k127_6181636_3 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007454 267.0
LYD3_k127_6181636_4 - - - - 0.000000000000000006619 94.0
LYD3_k127_6181636_5 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.00000000000409 79.0
LYD3_k127_6181675_0 oligoendopeptidase F K08602 - - 1.117e-222 705.0
LYD3_k127_6181675_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 357.0
LYD3_k127_6181675_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000000000001581 157.0
LYD3_k127_6181675_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.000000000000000000000000000000000000001256 150.0
LYD3_k127_6181675_4 Regulatory protein, FmdB family - - - 0.000000000000002322 80.0
LYD3_k127_6185323_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008316 538.0
LYD3_k127_6185323_1 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002747 291.0
LYD3_k127_6185323_10 HD domain - - - 0.00000000000000005537 81.0
LYD3_k127_6185323_11 NADPH:quinone reductase activity - - - 0.00000000000000009258 81.0
LYD3_k127_6185323_12 metallopeptidase activity - - - 0.00000000476 69.0
LYD3_k127_6185323_13 PD-(D/E)XK nuclease superfamily - - - 0.00000002188 61.0
LYD3_k127_6185323_14 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate - - - 0.00004098 46.0
LYD3_k127_6185323_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002332 296.0
LYD3_k127_6185323_3 Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus K07261 GO:0000270,GO:0003674,GO:0003824,GO:0004175,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016787,GO:0019538,GO:0030203,GO:0034645,GO:0042221,GO:0042493,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0050896,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000002973 248.0
LYD3_k127_6185323_4 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001621 250.0
LYD3_k127_6185323_5 Protein serine threonine phosphatase K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000001118 199.0
LYD3_k127_6185323_6 VKc - - - 0.000000000000000000000000000000000000000000000005622 188.0
LYD3_k127_6185323_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000001421 156.0
LYD3_k127_6185323_8 Alpha/beta hydrolase family K03928 - 3.1.1.1 0.00000000000000000000000000000000000006848 162.0
LYD3_k127_6185323_9 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000001922 104.0
LYD3_k127_6192672_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 472.0
LYD3_k127_6192672_1 Anion-transporting ATPase K01551 - 3.6.3.16 0.0000000000000000000000000000000000000000000000000000000005204 218.0
LYD3_k127_6192672_2 GyrI-like small molecule binding domain - - - 0.000000000000000000000000000000000000000000000000000006578 196.0
LYD3_k127_6192672_3 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.00000000000000000004069 102.0
LYD3_k127_6195774_0 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 492.0
LYD3_k127_6195774_1 histone H2A K63-linked ubiquitination - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 383.0
LYD3_k127_6195774_11 PFAM Transglycosylase-associated protein - - - 0.00000005132 61.0
LYD3_k127_6195774_2 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 325.0
LYD3_k127_6195774_3 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000002312 269.0
LYD3_k127_6195774_4 Domain of unknown function (DUF4126) - - - 0.0000000000000000000000000000000000000000000000000000000004165 208.0
LYD3_k127_6195774_5 - - - - 0.0000000000000000000000000000000000000000000331 167.0
LYD3_k127_6195774_7 Dodecin K09165 - - 0.0000000000000000004286 93.0
LYD3_k127_6195774_8 - - - - 0.00000000000000002028 88.0
LYD3_k127_6195774_9 Lysin motif - - - 0.00000000000000197 80.0
LYD3_k127_6209566_0 PIN domain - - - 0.0000000000000000000000000004007 119.0
LYD3_k127_6209566_1 PFAM PIN domain - - - 0.0000000000000000000000001341 112.0
LYD3_k127_6209566_2 - - - - 0.000000000000005081 79.0
LYD3_k127_6209566_3 Antidote-toxin recognition MazE, bacterial antitoxin - - - 0.000000000003539 71.0
LYD3_k127_6211840_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 328.0
LYD3_k127_6211840_1 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000001017 166.0
LYD3_k127_6211840_2 Poly(3-hydroxybutyrate) depolymerase - - - 0.0000000000000000000000000000000000162 148.0
LYD3_k127_6211840_3 cellular response to phosphate starvation - - - 0.0000000000000000000004138 102.0
LYD3_k127_6211840_4 efflux transmembrane transporter activity - - - 0.0000000000003238 82.0
LYD3_k127_6211840_5 multidrug resistance efflux pump K03543 - - 0.000003821 59.0
LYD3_k127_6236336_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001579 242.0
LYD3_k127_6236336_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000004523 169.0
LYD3_k127_6236336_2 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000114 127.0
LYD3_k127_6236336_3 23S rRNA-intervening sequence protein - - - 0.00000000000000000001074 98.0
LYD3_k127_6236336_4 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000008409 48.0
LYD3_k127_6236418_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1206.0
LYD3_k127_6236418_1 Bacterial regulatory protein, Fis family K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 531.0
LYD3_k127_6236418_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000001974 198.0
LYD3_k127_6236418_3 ABC transporter K02003 - - 0.0000000000000000001082 99.0
LYD3_k127_6237731_0 Ricin-type beta-trefoil - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 415.0
LYD3_k127_6237731_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005865 283.0
LYD3_k127_6237731_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000002782 232.0
LYD3_k127_6241083_0 PFAM Aldo keto reductase family K07079 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 430.0
LYD3_k127_6241083_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000002365 192.0
LYD3_k127_625047_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004372 392.0
LYD3_k127_625047_1 Domain of unknown function (DUF4145) - - - 0.000000000000000000000000000000000000000000000001776 181.0
LYD3_k127_6258444_0 Cellulase (glycosyl hydrolase family 5) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 426.0
LYD3_k127_6258444_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000005039 231.0
LYD3_k127_6258444_2 Histidine kinase - - - 0.000000000000000000006122 100.0
LYD3_k127_6272927_0 Protein of unknown function (DUF2442) - - - 0.0000000000000000000000000000005766 124.0
LYD3_k127_6272927_2 amino acid activation for nonribosomal peptide biosynthetic process K05996 - 3.4.17.18 0.0000002049 64.0
LYD3_k127_6277321_0 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 334.0
LYD3_k127_6277321_1 - - - - 0.00000000000000000000000000000000000000000481 179.0
LYD3_k127_6280453_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 402.0
LYD3_k127_6280453_1 Sulfatase K01133 - 3.1.6.6 0.00000000000000000000000000000000000000000000000000000000000000000001665 259.0
LYD3_k127_6280453_10 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.0000000000001047 87.0
LYD3_k127_6280453_11 - - - - 0.000115 54.0
LYD3_k127_6280453_2 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000002314 162.0
LYD3_k127_6280453_3 methyltransferase - - - 0.000000000000000000000000000000000000001955 158.0
LYD3_k127_6280453_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000006705 133.0
LYD3_k127_6280453_5 - - - - 0.0000000000000000000000000001626 132.0
LYD3_k127_6280453_6 regulation of translation K03530,K05788 - - 0.00000000000000000001579 95.0
LYD3_k127_6280453_8 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000002828 84.0
LYD3_k127_6280453_9 PFAM glycosyl transferase family 39 - - - 0.000000000000001551 90.0
LYD3_k127_6284287_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000529 572.0
LYD3_k127_6284287_1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
LYD3_k127_6302219_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009301 428.0
LYD3_k127_6302219_1 Putative TM nitroreductase - - - 0.00000000000000000000000000000000000000000000001211 178.0
LYD3_k127_6302219_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000002175 164.0
LYD3_k127_6302219_3 Cytochrome C assembly protein - - - 0.00000000000000000000000000000000001409 145.0
LYD3_k127_6302219_4 cellulose binding - - - 0.00000000000001811 88.0
LYD3_k127_6302219_5 TPR repeat - - - 0.00000000000007427 82.0
LYD3_k127_6314361_0 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001896 272.0
LYD3_k127_6314361_1 iron ion homeostasis - - - 0.00000000000000000001901 106.0
LYD3_k127_6314361_3 ig-like, plexins, transcription factors - - - 0.0000000004294 66.0
LYD3_k127_631892_0 COG0277 FAD FMN-containing dehydrogenases K00102 - 1.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009843 553.0
LYD3_k127_631892_1 Water Stress and Hypersensitive response - - - 0.000000000000000000000000000000000000003436 159.0
LYD3_k127_631892_2 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.000000000000000000000000000000218 136.0
LYD3_k127_631892_3 CCR4-Not complex subunit Caf16 K12608 GO:0000166,GO:0000288,GO:0000289,GO:0000956,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000002118 93.0
LYD3_k127_6322352_0 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 344.0
LYD3_k127_6322352_1 Uncharacterised ArCR, COG2043 - - - 0.0000000000000000000000000000000000000000000000000000000003243 217.0
LYD3_k127_6322352_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000006891 137.0
LYD3_k127_6322352_3 Belongs to the glycosyl hydrolase 8 (cellulase D) family K00694,K15531,K20542 - 2.4.1.12,3.2.1.156,3.2.1.4 0.00000000000000000000000688 119.0
LYD3_k127_6322352_4 - - - - 0.000000000000000007089 84.0
LYD3_k127_6322352_5 domain, Protein - - - 0.0000000002053 68.0
LYD3_k127_6322352_6 CUB and sushi K17495 - - 0.00000001542 66.0
LYD3_k127_6323297_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.416e-202 644.0
LYD3_k127_6323297_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 2.895e-199 629.0
LYD3_k127_6323297_2 - - - - 0.0000000000378 73.0
LYD3_k127_6326904_0 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000462 207.0
LYD3_k127_6326904_1 Divalent heavy-metal cations transporter K07238 - - 0.0000000000000000000000000000000000000000001076 172.0
LYD3_k127_6326904_2 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000004126 125.0
LYD3_k127_6326904_3 - - - - 0.000000000000000000000000004735 125.0
LYD3_k127_6342465_0 formate C-acetyltransferase glycine radical - - - 4.352e-283 896.0
LYD3_k127_6342465_1 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 517.0
LYD3_k127_6342465_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003352 266.0
LYD3_k127_634372_0 PFAM glycoside hydrolase, family 10 K01181 - 3.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007747 306.0
LYD3_k127_634372_1 ribonuclease BN K07058 - - 0.000000000000000000000000000000000000002673 162.0
LYD3_k127_6358599_0 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 321.0
LYD3_k127_6358599_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000698 258.0
LYD3_k127_6358599_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000004989 219.0
LYD3_k127_6358599_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000003336 221.0
LYD3_k127_6358599_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000004963 156.0
LYD3_k127_6358599_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000005596 131.0
LYD3_k127_6358599_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000003341 97.0
LYD3_k127_6358599_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000138 76.0
LYD3_k127_6358599_8 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000002088 76.0
LYD3_k127_6364456_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 604.0
LYD3_k127_6364456_1 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006804 388.0
LYD3_k127_6364456_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000008079 128.0
LYD3_k127_6364456_3 Domain of unknown function (DUF4175) - - - 0.000000000000000000003699 105.0
LYD3_k127_6364456_4 Domain of unknown function K20276 - - 0.000000000000000005134 92.0
LYD3_k127_638074_0 Maltogenic Amylase, C-terminal domain K05343 - 3.2.1.1,5.4.99.16 0.0 1405.0
LYD3_k127_638074_1 A-macroglobulin complement component - - - 0.0 1256.0
LYD3_k127_638074_2 4-alpha-glucanotransferase - - - 3.375e-195 631.0
LYD3_k127_638074_3 Glycosyl transferase, family 2 K21349 - 2.4.1.268 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 304.0
LYD3_k127_638074_4 - - - - 0.000000000000000000000000000000000000000003486 164.0
LYD3_k127_638074_5 Domain of unknown function (DUF4404) - - - 0.00000000000000000000000000000000000000941 149.0
LYD3_k127_6393070_0 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 461.0
LYD3_k127_6393070_1 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001966 254.0
LYD3_k127_6393070_2 Hsp33 protein K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000002989 232.0
LYD3_k127_6393070_3 RNA-DNA hybrid ribonuclease activity K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000001408 201.0
LYD3_k127_6393070_4 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000000007954 179.0
LYD3_k127_6393070_5 Ami_3 K01448 - 3.5.1.28 0.00000000000000000000000000000000005694 145.0
LYD3_k127_6393070_6 Belongs to the ompA family - - - 0.0000000000000000007145 98.0
LYD3_k127_6393070_7 Ig domain protein group 2 domain protein - - - 0.000005938 59.0
LYD3_k127_6393070_8 Domain of unknown function (DUF4388) K12132 - 2.7.11.1 0.00007498 54.0
LYD3_k127_6399548_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 2.488e-260 831.0
LYD3_k127_6399548_1 Protein of unknown function (DUF3443) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008153 311.0
LYD3_k127_6399548_2 Protein of unknown function (DUF2844) - - - 0.00000000002805 75.0
LYD3_k127_6399548_3 PFAM GCN5-related N-acetyltransferase K03790 - 2.3.1.128 0.0004289 50.0
LYD3_k127_6402069_0 Belongs to the glycosyl hydrolase 26 family K01218 - 3.2.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 396.0
LYD3_k127_6402069_1 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007253 319.0
LYD3_k127_6402069_2 PFAM glycoside hydrolase family 10 - - - 0.0000000000000007017 92.0
LYD3_k127_6402069_3 Belongs to the FPP GGPP synthase family K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000003972 74.0
LYD3_k127_6408530_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 0.0 1693.0
LYD3_k127_6408530_1 Type III restriction K01153 - 3.1.21.3 0.00000000000000000000000000000000000000000000000000000000000579 218.0
LYD3_k127_6408530_2 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000001326 211.0
LYD3_k127_6408530_3 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000002641 133.0
LYD3_k127_6408530_4 Glycosyl hydrolase family 48 - - - 0.000000006498 63.0
LYD3_k127_6408607_0 Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001607 263.0
LYD3_k127_6408607_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000009287 251.0
LYD3_k127_6408607_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000001491 189.0
LYD3_k127_6408607_3 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000002478 173.0
LYD3_k127_6408607_4 zinc-ribbon domain - - - 0.0000000005619 71.0
LYD3_k127_6408607_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 0.0000001135 56.0
LYD3_k127_6412155_0 ATPase family associated with various cellular activities (AAA) - - - 0.0000000000000000000000000000000000005675 144.0
LYD3_k127_6412155_1 HAD superfamily K07025 - - 0.0000000000000000000000000000000004365 140.0
LYD3_k127_6412155_3 Domain of unknown function (DUF4143) K07133 - - 0.0000000000000000000006381 103.0
LYD3_k127_6421428_0 Ricin-type beta-trefoil - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006251 316.0
LYD3_k127_643294_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 420.0
LYD3_k127_643294_1 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K10855 - 6.4.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 355.0
LYD3_k127_643294_2 Belongs to the ompA family K03286,K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005657 321.0
LYD3_k127_643294_3 - - - - 0.0000000000000000000000000000000000000000000000001404 192.0
LYD3_k127_643294_4 Acetone carboxylase gamma subunit - - - 0.0000000000000000000000000000000000000000000356 165.0
LYD3_k127_643294_5 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000001532 137.0
LYD3_k127_643294_6 photosystem II stabilization K02237 - - 0.0000000000000000000000000000006419 136.0
LYD3_k127_643294_7 Bacterial protein of unknown function (DUF937) - - - 0.00000000000000000000001422 108.0
LYD3_k127_6437481_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 407.0
LYD3_k127_6437481_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009654 271.0
LYD3_k127_6437481_2 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000003746 205.0
LYD3_k127_6437481_3 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000001864 185.0
LYD3_k127_6437481_4 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000001529 149.0
LYD3_k127_6437481_5 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000001095 126.0
LYD3_k127_6437481_6 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000008415 109.0
LYD3_k127_6437481_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000138 76.0
LYD3_k127_6441065_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 425.0
LYD3_k127_6441065_1 Alpha/beta hydrolase family K06999 - - 0.0000000000000000000000000000000000899 145.0
LYD3_k127_644419_0 protein serine/threonine kinase activity - - - 0.0000000276 66.0
LYD3_k127_6456819_0 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 8.617e-235 745.0
LYD3_k127_6456819_1 belongs to the sigma-70 factor family - - - 0.00003995 50.0
LYD3_k127_6462600_0 Cytochrome c-type biogenesis protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 545.0
LYD3_k127_6462600_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 343.0
LYD3_k127_6462600_2 protein containing a von Willebrand factor type A (vWA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007944 306.0
LYD3_k127_6462600_3 SNARE associated Golgi protein K03975,K19302 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000001237 258.0
LYD3_k127_6462600_4 DIM6 NTAB family - - - 0.000000000000000000000000000000000000000000005707 171.0
LYD3_k127_6462600_5 - - - - 0.00000000000000000000000000000000000000000001273 186.0
LYD3_k127_646309_0 FAD binding domain of DNA photolyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002367 525.0
LYD3_k127_646309_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000001861 248.0
LYD3_k127_646309_2 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.000000000000000000000328 97.0
LYD3_k127_6465116_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 406.0
LYD3_k127_6465116_1 Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 306.0
LYD3_k127_6465116_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000005064 111.0
LYD3_k127_6467425_0 Calcineurin-like phosphoesterase superfamily domain K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 392.0
LYD3_k127_6467425_1 Phage integrase, N-terminal SAM-like domain K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007683 282.0
LYD3_k127_6467425_2 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000001854 199.0
LYD3_k127_6467425_3 hydrolase family 9 K01179 - 3.2.1.4 0.0000000000002869 76.0
LYD3_k127_647754_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 406.0
LYD3_k127_647754_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000009597 184.0
LYD3_k127_6482823_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 430.0
LYD3_k127_6482823_1 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001383 274.0
LYD3_k127_6482823_2 - - - - 0.000000000000000000249 95.0
LYD3_k127_6486559_0 Protein-arginine deiminase (PAD) K01481 - 3.5.3.15 0.0000000002739 66.0
LYD3_k127_6486559_1 Arylsulfotransferase (ASST) - - - 0.000000002069 71.0
LYD3_k127_6486559_2 Arylsulfotransferase (ASST) - - - 0.0000001036 60.0
LYD3_k127_6486559_3 Domain of unknown function (DUF4034) - - - 0.00002086 53.0
LYD3_k127_6508379_0 SMART Tetratricopeptide domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 402.0
LYD3_k127_6508379_1 Beta propeller domain - - - 0.00000000000000000000000000003091 136.0
LYD3_k127_6509511_0 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 522.0
LYD3_k127_6509511_1 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 395.0
LYD3_k127_6509511_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 346.0
LYD3_k127_6509511_3 Belongs to the ompA family K03286,K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000776 330.0
LYD3_k127_6509511_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001403 248.0
LYD3_k127_6509511_5 Glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000002708 193.0
LYD3_k127_6509511_6 - - - - 0.0000000000000000000000000000000000000000000000007312 191.0
LYD3_k127_6509511_7 PFAM Methyltransferase type - - - 0.000000005177 68.0
LYD3_k127_6526470_0 cysteine synthase A K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 491.0
LYD3_k127_6526470_1 Short-chain dehydrogenase reductase Sdr - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007489 381.0
LYD3_k127_6526470_2 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 317.0
LYD3_k127_6526470_3 cellulose binding - - - 0.000000000000000000000000000000000001402 160.0
LYD3_k127_6526470_4 metallopeptidase activity K01179,K07004,K12548 - 3.2.1.4 0.000000000000000000000000000000003546 149.0
LYD3_k127_6526470_5 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000009808 134.0
LYD3_k127_6526470_6 Peptidase family M23 - - - 0.0000000000102 77.0
LYD3_k127_6526470_7 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179 - 3.2.1.4 0.00003061 57.0
LYD3_k127_6526470_8 peptidase - - - 0.0002114 55.0
LYD3_k127_6529183_0 hydrolase, family 3 K05349 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 616.0
LYD3_k127_6529183_1 ABC transporter substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 418.0
LYD3_k127_6529183_2 RmuC family K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006551 407.0
LYD3_k127_6529183_3 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005529 357.0
LYD3_k127_6529183_4 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000001257 163.0
LYD3_k127_6529183_5 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000001736 162.0
LYD3_k127_6529183_6 - - - - 0.0000005391 61.0
LYD3_k127_6530209_0 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 325.0
LYD3_k127_6530209_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000001657 212.0
LYD3_k127_6530209_2 transport system involved in gliding motility, auxiliary component - - - 0.000000000000000000000000000000000141 151.0
LYD3_k127_6530209_3 Domain of unknown function (DUF4340) - - - 0.00000000000003345 85.0
LYD3_k127_6530610_0 glycosyl transferase family K00697 - 2.4.1.15,2.4.1.347 4.5e-290 910.0
LYD3_k127_6530610_1 ABC transporter K06147 - - 2.793e-224 709.0
LYD3_k127_6530610_2 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007037 410.0
LYD3_k127_6530610_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005914 277.0
LYD3_k127_6530610_4 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000008287 141.0
LYD3_k127_6532317_0 Transcriptional regulator K03655,K10439,K11708 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 602.0
LYD3_k127_6532317_1 dTDP-glucose 4,6-dehydratase activity K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 450.0
LYD3_k127_6532317_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 437.0
LYD3_k127_6532317_3 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007707 271.0
LYD3_k127_6532317_4 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000007961 258.0
LYD3_k127_6532317_5 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000002203 233.0
LYD3_k127_6532317_6 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 0.00000000002817 70.0
LYD3_k127_6535944_0 SWIM zinc finger - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 348.0
LYD3_k127_6535944_1 Domain of unknown function (DUF5107) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006008 342.0
LYD3_k127_6535944_2 SNF2 Helicase protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 318.0
LYD3_k127_6535944_3 Cephalosporin hydroxylase - - - 0.00000000000000000000000000000005555 136.0
LYD3_k127_6545744_0 Vitamin K epoxide reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 347.0
LYD3_k127_6545744_1 chlorophyll binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002871 247.0
LYD3_k127_6545744_2 Spermidine putrescine ABC transporter ATPase K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000004587 228.0
LYD3_k127_6545744_3 Binding-protein-dependent transport system inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000986 186.0
LYD3_k127_6545744_4 Beta-L-arabinofuranosidase, GH127 - - - 0.00000000000000000000000000000000007317 148.0
LYD3_k127_6545744_5 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000006645 122.0
LYD3_k127_6545744_6 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000002393 96.0
LYD3_k127_6545744_7 protein conserved in bacteria K09974 - - 0.0000000000000009257 90.0
LYD3_k127_6545744_8 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0000000000002301 79.0
LYD3_k127_6545744_9 - - - - 0.0000001912 53.0
LYD3_k127_6551286_0 FAD linked oxidase domain protein - - - 1.206e-237 753.0
LYD3_k127_6551286_1 - - - - 0.000000000000000000000000000000000000000000001019 185.0
LYD3_k127_6551286_2 Vault protein inter-alpha-trypsin domain - - - 0.000000009311 66.0
LYD3_k127_6559451_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.000000000000000000000000000000000000000000000000000000000006399 223.0
LYD3_k127_6580960_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 1.931e-213 674.0
LYD3_k127_6580960_1 Surface antigen - - - 0.00000000000000000000000000000000000000000000000000000000000001033 233.0
LYD3_k127_6580960_2 PFAM Orn DAP Arg decarboxylase 2 K01581 - 4.1.1.17 0.0000000000000000000000000000000000008842 143.0
LYD3_k127_6580960_3 Belongs to the uridine kinase family K00855,K00876 - 2.7.1.19,2.7.1.48 0.000002815 55.0
LYD3_k127_6585225_0 Thioredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 503.0
LYD3_k127_6585225_1 Bacterial protein of unknown function (DUF882) - - - 0.000000000000000000000000000004977 126.0
LYD3_k127_6585225_2 TPR repeat - - - 0.0000000002453 71.0
LYD3_k127_6593421_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 317.0
LYD3_k127_6593421_1 TIGRFAM Tat (twin-arginine translocation) pathway signal sequence K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000136 267.0
LYD3_k127_6622629_0 resolution of meiotic recombination intermediates - - - 0.000000000000000000000000000000000000000000000000000000000000000004802 250.0
LYD3_k127_6622629_1 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000007453 195.0
LYD3_k127_6622629_2 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000001382 153.0
LYD3_k127_6622629_4 Domain of Unknown Function (DUF350) - - - 0.000000000000000000007576 102.0
LYD3_k127_6623193_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004116 383.0
LYD3_k127_6623193_1 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000002139 86.0
LYD3_k127_6636114_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 458.0
LYD3_k127_6636114_1 TIGRFAM Carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 439.0
LYD3_k127_6636114_2 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 367.0
LYD3_k127_6636114_3 zinc-ribbon domain - - - 0.00000000000000000000000000000000000002445 163.0
LYD3_k127_6636114_4 biotin lipoyl attachment domain-containing protein K02160 - - 0.00000000000000008317 85.0
LYD3_k127_6636114_5 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000004102 76.0
LYD3_k127_6636114_6 - - - - 0.0000000000001256 81.0
LYD3_k127_6636114_7 - K07039 - - 0.000000000001938 79.0
LYD3_k127_6646594_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 425.0
LYD3_k127_6646594_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007937 364.0
LYD3_k127_6646594_2 Phosphate transport system permease K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002729 359.0
LYD3_k127_6646594_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 327.0
LYD3_k127_6646594_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000142 248.0
LYD3_k127_6653144_0 4Fe-4S single cluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006325 392.0
LYD3_k127_6653144_1 Iron-sulfur cluster-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 365.0
LYD3_k127_6653144_2 Memo-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 314.0
LYD3_k127_6653144_3 - - - - 0.0000000000000000000001492 111.0
LYD3_k127_6653144_4 - - - - 0.000000000000000000007478 102.0
LYD3_k127_6653144_5 signal peptide processing K00564,K13280 - 2.1.1.172,3.4.21.89 0.000000000000000008716 96.0
LYD3_k127_6653144_6 Domain of unknown function (DUF4926) - - - 0.000000000000001411 82.0
LYD3_k127_6653144_7 - - - - 0.00000000004218 69.0
LYD3_k127_6653144_8 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.000005818 56.0
LYD3_k127_6653144_9 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 GO:0008150,GO:0040008,GO:0045926,GO:0048519,GO:0050789,GO:0065007 - 0.0005579 50.0
LYD3_k127_667379_0 Major Facilitator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003484 508.0
LYD3_k127_667379_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K02548,K03179,K17105 - 2.5.1.39,2.5.1.42,2.5.1.74 0.0000000000000000000000000000000000000000000000000000000000004098 230.0
LYD3_k127_667379_2 Isoprenylcysteine carboxyl methyltransferase K16168 - - 0.000000000000000000000000000000000004417 154.0
LYD3_k127_667379_3 AcrB/AcrD/AcrF family - - - 0.00000000000000001052 84.0
LYD3_k127_667379_4 Regulatory protein MarR - - - 0.00000006845 61.0
LYD3_k127_671961_0 PilZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002228 246.0
LYD3_k127_675030_0 Transposase - - - 0.00000000000000000000000000000000000000001554 157.0
LYD3_k127_675030_1 PilZ domain K07001,K07003,K10914 - - 0.0000003102 57.0
LYD3_k127_675030_2 PIN domain - - - 0.0000003273 61.0
LYD3_k127_675030_3 positive regulation of growth K01081 - 3.1.3.5 0.0001398 49.0
LYD3_k127_68321_0 anaphase-promoting complex binding - - - 2.153e-200 659.0
LYD3_k127_686335_0 Belongs to the glycosyl hydrolase 43 family K01181,K09955 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006445 557.0
LYD3_k127_686335_2 domain, Protein - - - 0.00000271 59.0
LYD3_k127_692262_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1017.0
LYD3_k127_692262_1 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005082 352.0
LYD3_k127_692262_2 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001663 226.0
LYD3_k127_692262_3 - K00241 - - 0.00000000000000000000000000000000000000000000000000002468 195.0
LYD3_k127_692262_4 repeat-containing protein - - - 0.0000000000000000000000002143 115.0
LYD3_k127_692262_5 PFAM 4Fe-4S ferredoxin, iron-sulfur binding K00176 - 1.2.7.3 0.000000000000005225 76.0
LYD3_k127_69248_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 302.0
LYD3_k127_69248_1 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000239 264.0
LYD3_k127_69248_2 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000001069 222.0
LYD3_k127_69248_3 Crp-like helix-turn-helix domain K10914 - - 0.00000000000000000000000004793 114.0
LYD3_k127_697476_0 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000009735 211.0
LYD3_k127_697476_1 B-box zinc finger - - - 0.0000000000000000000000000000000000000001934 169.0
LYD3_k127_697476_2 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.00004216 55.0
LYD3_k127_705230_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047 488.0
LYD3_k127_705230_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000002151 262.0
LYD3_k127_705230_2 ABC-type transport system involved in resistance to organic solvents auxiliary component K07323 - - 0.000000000000000000005454 103.0
LYD3_k127_705230_3 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589,K13052 - - 0.00000001469 62.0
LYD3_k127_709567_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000001188 180.0
LYD3_k127_710945_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009546 392.0
LYD3_k127_710945_1 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 296.0
LYD3_k127_710945_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000003716 153.0
LYD3_k127_714348_0 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000354 244.0
LYD3_k127_714348_1 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000424 213.0
LYD3_k127_714348_2 PFAM FecR protein - - - 0.0000000000000000000000000000002972 140.0
LYD3_k127_714348_3 Protein kinase domain K08884,K12132 - 2.7.11.1 0.00002795 50.0
LYD3_k127_715021_0 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 1.419e-202 640.0
LYD3_k127_715021_1 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008793 305.0
LYD3_k127_715021_2 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000008571 239.0
LYD3_k127_715021_3 tagaturonate epimerase K21619 - 5.1.2.7 0.0000000000000000000000000000000000000000000000000000001505 198.0
LYD3_k127_715021_4 lactate racemase activity K22373 - 5.1.2.1 0.0000000000000000000000000000000000000000000000000006954 192.0
LYD3_k127_715021_5 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000004446 125.0
LYD3_k127_723122_0 Aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 504.0
LYD3_k127_723122_1 DNA Topoisomerase IV K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001988 369.0
LYD3_k127_723122_2 Two component regulator propeller - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 349.0
LYD3_k127_723122_3 - - - - 0.00000000003777 68.0
LYD3_k127_724197_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004859 368.0
LYD3_k127_724197_1 Riboflavin biosynthesis protein RibD K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002633 322.0
LYD3_k127_724197_2 riboflavin synthase, alpha subunit K00793 GO:0003674,GO:0003824,GO:0004746,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.9 0.000000000000000000000000000000000000000000000000000008423 196.0
LYD3_k127_724197_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000716 183.0
LYD3_k127_724197_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.00000000000000000000000000000000000000000000000008488 182.0
LYD3_k127_724197_5 Cold shock protein K03704 - - 0.00000000000000000000001309 101.0
LYD3_k127_724903_0 lactoylglutathione lyase activity K08234 - - 0.000000000000000000000000000000001431 135.0
LYD3_k127_724903_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000002488 115.0
LYD3_k127_724903_2 Domain of unknown function (DUF1844) - - - 0.00000000000000000005534 96.0
LYD3_k127_730499_0 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000004188 243.0
LYD3_k127_730499_2 Class II Aldolase and Adducin N-terminal domain - - - 0.00000000000000001338 83.0
LYD3_k127_735539_0 Putative transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 314.0
LYD3_k127_735539_1 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000000000000009134 224.0
LYD3_k127_735539_2 Fic/DOC family K07341 - - 0.0000000000000000000000000000000218 132.0
LYD3_k127_735539_3 PFAM SpoVT AbrB K07172,K18842 - - 0.000000000000001781 79.0
LYD3_k127_736409_0 Belongs to the bacterial solute-binding protein 9 family K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003972 268.0
LYD3_k127_736409_1 PFAM ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000005569 199.0
LYD3_k127_736409_2 Tfp pilus assembly protein FimV - - - 0.00000000000000000000000000000000000000000000008242 184.0
LYD3_k127_736409_3 ABC 3 transport family K09816 - - 0.000000000000000000000000000000000000000006247 173.0
LYD3_k127_736409_5 oxidoreductase activity K00505 - 1.14.18.1 0.0002101 55.0
LYD3_k127_736825_0 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 630.0
LYD3_k127_736825_1 MMPL family K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 524.0
LYD3_k127_736825_2 lipid A biosynthesis acyltransferase - - - 0.000000000000000000000000000000000000000000000004825 183.0
LYD3_k127_737368_0 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000241 246.0
LYD3_k127_737368_1 CHAT domain - - - 0.00000000000000000000000000168 118.0
LYD3_k127_750058_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008544 493.0
LYD3_k127_750058_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000891 163.0
LYD3_k127_801177_0 depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 323.0
LYD3_k127_801177_1 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000002762 139.0
LYD3_k127_802843_0 RibD C-terminal domain - - - 0.000000000000000000000000000000000000001507 157.0
LYD3_k127_811475_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 353.0
LYD3_k127_811475_1 sulfuric ester hydrolase activity - - - 0.000000000000000000000000000000000000000000000000000004678 214.0
LYD3_k127_811475_2 PFAM Homoserine dehydrogenase K00003 - 1.1.1.3 0.0000001105 55.0
LYD3_k127_816071_0 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED - - - 0.000000000000000000000000000000000000000000000000000000000000000000002527 239.0
LYD3_k127_816071_1 Alg9-like mannosyltransferase family K05286 - - 0.000000000000000000000000000000000000000032 166.0
LYD3_k127_816071_2 Membrane - - - 0.0000000000000000000000000000003963 141.0
LYD3_k127_833619_0 Ricin-type beta-trefoil - - - 0.000000000000000000000000000000000000000000000034 191.0
LYD3_k127_833619_1 iron ion homeostasis - - - 0.00000000000000000000000000000000000000001153 157.0
LYD3_k127_833619_2 iron ion homeostasis - - - 0.00000000000000000000000000000000000000001581 162.0
LYD3_k127_863829_0 Arabinogalactan endo-beta-1,4-galactanase K01224 - 3.2.1.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 292.0
LYD3_k127_864435_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787,K15726 - - 0.000000000000000000000000000000000000000000000000889 180.0
LYD3_k127_864435_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion K15727 - - 0.00000000000000000000000000000000000000008177 173.0
LYD3_k127_864435_2 PFAM outer membrane efflux protein K15725 - - 0.000005545 57.0
LYD3_k127_872318_0 IMG reference gene - - - 0.000000000000000000000000000000000003464 151.0
LYD3_k127_872318_1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000002225 95.0
LYD3_k127_872318_2 PFAM Flp Fap pilin component K02651 - - 0.000008166 53.0
LYD3_k127_874656_0 bacterioferritin comigratory protein K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000001463 182.0
LYD3_k127_874656_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000001106 174.0
LYD3_k127_874656_2 cellulose binding - - - 0.00000000000000000000000003937 126.0
LYD3_k127_87996_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004878 254.0
LYD3_k127_87996_1 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000007353 187.0
LYD3_k127_87996_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.0000000000000000000000000000000005274 132.0
LYD3_k127_87996_3 NADP Oxidoreductase K06988 - 1.5.1.40 0.000000000000000000000000000000002619 130.0
LYD3_k127_87996_4 ORF6N domain - - - 0.00000000000000004671 82.0
LYD3_k127_87996_5 MEDS: MEthanogen/methylotroph, DcmR Sensory domain - - - 0.000000000000001391 81.0
LYD3_k127_87996_6 Histidine kinase - - - 0.0002171 48.0
LYD3_k127_881378_0 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009338 572.0
LYD3_k127_881378_1 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 446.0
LYD3_k127_881378_2 Histidine kinase K02668,K07709 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 374.0
LYD3_k127_881378_3 TIGRFAM type IV-A pilus assembly ATPase PilB K02652 - - 0.0000000000000000000002973 97.0
LYD3_k127_881557_0 Homoserine dehydrogenase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 372.0
LYD3_k127_881557_1 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002642 263.0
LYD3_k127_881557_2 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000001315 186.0
LYD3_k127_881557_3 transcription regulator containing HTH domain K18831 - - 0.0000000000000000000000000000000000000000001902 161.0
LYD3_k127_881557_4 protein conserved in bacteria K19166 - - 0.0000000000000000000000002456 116.0
LYD3_k127_88627_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008126 421.0
LYD3_k127_88627_1 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 411.0
LYD3_k127_88627_2 Nucleoside H+ symporter K05820 - - 0.00000000000000000000000000000000000000000000000000000000000000005296 238.0
LYD3_k127_88627_3 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.000000000000000000000000001926 117.0
LYD3_k127_88627_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000001401 82.0
LYD3_k127_88627_5 - - - - 0.0000006053 55.0
LYD3_k127_890042_0 Archaea bacterial proteins of unknown function K06921 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001392 268.0
LYD3_k127_890042_1 Protein kinase; unclassified specificity. K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000002971 192.0
LYD3_k127_890042_2 PIN domain - - - 0.00000000000000000000000000000000000002561 147.0
LYD3_k127_890042_3 PFAM Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000000000000003538 138.0
LYD3_k127_890042_4 Helix-turn-helix domain - - - 0.0000000000000000000000001207 109.0
LYD3_k127_890042_5 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000000000000004415 100.0
LYD3_k127_891517_0 Formate dehydrogenase, alpha subunit K00123 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006464,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009326,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0016622,GO:0016903,GO:0018282,GO:0018289,GO:0018291,GO:0019538,GO:0022607,GO:0031163,GO:0032991,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0047111,GO:0051186,GO:0055114,GO:0071704,GO:0071840,GO:1901564,GO:1902494 1.17.1.9 1.074e-291 917.0
LYD3_k127_891517_1 4Fe-4S dicluster domain K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 319.0
LYD3_k127_891517_2 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000001797 194.0
LYD3_k127_892983_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 2.19e-228 741.0
LYD3_k127_901922_0 Sulfatase-modifying factor enzyme 1 K12132 - 2.7.11.1 0.000000000000000000000000000000000000000002376 166.0
LYD3_k127_901922_1 RDD family - - - 0.0000000000000000000000000000005136 130.0
LYD3_k127_901922_2 Tetratricopeptide repeat - - - 0.000000000000000000000000001089 121.0
LYD3_k127_901922_3 PFAM Excinuclease ABC C subunit domain protein K07461 - - 0.00000000000000000000000214 104.0
LYD3_k127_901922_4 D-alanyl-D-alanine carboxypeptidase K07259 - 3.4.16.4 0.000000001853 70.0
LYD3_k127_903763_0 Peptidase, M61 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 422.0
LYD3_k127_903763_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000257 284.0
LYD3_k127_903763_3 Serine Threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000001775 61.0
LYD3_k127_903763_4 guanyl-nucleotide exchange factor activity K01179,K01183,K02034 - 3.2.1.14,3.2.1.4 0.000000003913 70.0
LYD3_k127_903763_5 Parallel beta-helix repeats - - - 0.0000005682 63.0
LYD3_k127_903763_6 PFAM PEGA domain - - - 0.0001721 53.0
LYD3_k127_910953_0 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 550.0
LYD3_k127_910953_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 536.0
LYD3_k127_910953_2 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002312 469.0
LYD3_k127_910953_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 469.0
LYD3_k127_910953_4 Histidine ammonia-lyase K01745,K10774 GO:0003674,GO:0003824,GO:0016829,GO:0016840,GO:0016841,GO:0016853,GO:0016866,GO:0016869,GO:0050368 4.3.1.23,4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 426.0
LYD3_k127_910953_5 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 318.0
LYD3_k127_910953_6 Belongs to the beta-ketoacyl-ACP synthases family K00647,K09458 - 2.3.1.179,2.3.1.41 0.0000000000000000000000000000002057 132.0
LYD3_k127_910953_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000004572 92.0
LYD3_k127_910953_8 Thioesterase K07107 - - 0.00000000000000003031 85.0
LYD3_k127_910953_9 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.000000000000001376 79.0
LYD3_k127_921317_0 Integrase core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 612.0
LYD3_k127_921317_1 Bacterial dnaA protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 351.0
LYD3_k127_925838_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 0.0 1190.0
LYD3_k127_925838_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009315 337.0
LYD3_k127_925838_2 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001913 250.0
LYD3_k127_925838_3 - - - - 0.00000000000000000000000000000000000000000000000445 179.0
LYD3_k127_925838_4 - - - - 0.00000000000000000000000004667 119.0
LYD3_k127_925838_5 Mannosyltransferase (PIG-V) - - - 0.00000000000000000000000009073 121.0
LYD3_k127_925838_6 DUF3160 - - - 0.000000000000000000001741 104.0
LYD3_k127_925838_7 Protein of unknown function (DUF2845) - - - 0.00000001255 62.0
LYD3_k127_925838_8 Sigma-70, region 4 - - - 0.00001476 52.0
LYD3_k127_929503_0 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 563.0
LYD3_k127_929503_1 Rhs Element Vgr Protein K11904 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 426.0
LYD3_k127_929503_2 Putative peptidoglycan binding domain - - - 0.000000000000000000000000000175 123.0
LYD3_k127_929925_0 lipolytic protein G-D-S-L family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 348.0
LYD3_k127_929925_1 Alpha-L-arabinofuranosidase B, catalytic K20844 - 3.2.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 314.0
LYD3_k127_929925_2 Glycosyl hydrolases family 8 - - - 0.0000000000000005546 86.0
LYD3_k127_929929_0 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000001602 229.0
LYD3_k127_929929_1 Belongs to the glycosyl hydrolase 5 (cellulase A) family K19355 GO:0000003,GO:0000272,GO:0003006,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005575,GO:0005623,GO:0005975,GO:0005976,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009828,GO:0009845,GO:0009900,GO:0009987,GO:0010047,GO:0010154,GO:0010412,GO:0015923,GO:0016043,GO:0016052,GO:0016787,GO:0016798,GO:0016985,GO:0016998,GO:0022414,GO:0032501,GO:0032502,GO:0032504,GO:0042545,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044464,GO:0045229,GO:0046355,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0061458,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090351,GO:1901575,GO:1990059 3.2.1.78 0.000000000000000000000000000000000000000000000000000003437 208.0
LYD3_k127_929929_2 Methyltransferase FkbM domain - - - 0.000000000000001777 89.0
LYD3_k127_953722_0 CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000001646 121.0
LYD3_k127_953722_1 Arylsulfotransferase (ASST) - - - 0.000000006935 69.0
LYD3_k127_955082_0 Belongs to the GSP D family K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 552.0
LYD3_k127_955082_1 TIGRFAM Flp pilus assembly protein CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000009347 227.0
LYD3_k127_955082_2 Response regulator, receiver K02282 - - 0.00000000000000000000000000000000000000001236 155.0
LYD3_k127_955082_3 Response regulator, receiver K02282 - - 0.00000000000000000000002561 108.0
LYD3_k127_955082_4 TadE-like protein - - - 0.00000000000001848 79.0
LYD3_k127_955417_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1e-323 1034.0
LYD3_k127_955417_1 NADH ubiquinone oxidoreductase, NADH-binding K00124,K00335,K18331 - 1.12.1.3,1.6.5.3 2.273e-255 799.0
LYD3_k127_955417_10 thaumatin-like protein - - - 0.0001627 48.0
LYD3_k127_955417_2 acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain K00249 GO:0000062,GO:0000166,GO:0000271,GO:0001889,GO:0003674,GO:0003824,GO:0003995,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006082,GO:0006091,GO:0006109,GO:0006111,GO:0006112,GO:0006575,GO:0006577,GO:0006578,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006950,GO:0007275,GO:0007507,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009062,GO:0009250,GO:0009266,GO:0009409,GO:0009437,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009888,GO:0009889,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010675,GO:0010906,GO:0014070,GO:0014706,GO:0015980,GO:0016020,GO:0016042,GO:0016043,GO:0016051,GO:0016054,GO:0016491,GO:0016604,GO:0016607,GO:0016627,GO:0016853,GO:0017076,GO:0019216,GO:0019222,GO:0019254,GO:0019395,GO:0019752,GO:0022607,GO:0030154,GO:0030258,GO:0030424,GO:0030554,GO:0031090,GO:0031323,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033539,GO:0033692,GO:0033993,GO:0034440,GO:0034637,GO:0034641,GO:0034645,GO:0035051,GO:0036094,GO:0042221,GO:0042398,GO:0042493,GO:0042594,GO:0042692,GO:0042802,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043436,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045329,GO:0046395,GO:0046688,GO:0048037,GO:0048513,GO:0048545,GO:0048731,GO:0048732,GO:0048738,GO:0048856,GO:0048869,GO:0050660,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0051791,GO:0051793,GO:0055007,GO:0055114,GO:0060537,GO:0061008,GO:0061061,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070991,GO:0071704,GO:0071840,GO:0072329,GO:0072359,GO:0080090,GO:0097159,GO:0097164,GO:0097367,GO:0097458,GO:0120025,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901567,GO:1901575,GO:1901576,GO:1901681 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 396.0
LYD3_k127_955417_3 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004677 310.0
LYD3_k127_955417_4 SCO1/SenC - - - 0.000000000000000000000000000000000000000000000000000001314 195.0
LYD3_k127_955417_5 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.00000000000000000000000000000000000000000001342 168.0
LYD3_k127_955417_6 Histidine kinase-like ATPase domain - - - 0.000000000000000000001251 96.0
LYD3_k127_955417_9 UDP-4-amino-4-deoxy-L-arabinose aminotransferase - - - 0.00009942 49.0
LYD3_k127_956861_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 302.0
LYD3_k127_956861_1 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004735 276.0
LYD3_k127_956861_2 Glycosyl hydrolases family 8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004158 259.0
LYD3_k127_956861_3 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000005907 252.0
LYD3_k127_956861_4 CRS1_YhbY K07574 - - 0.000000000000000000000000000005837 138.0
LYD3_k127_956861_5 Kazal type serine protease inhibitors - - - 0.0000000000000000000000001162 119.0
LYD3_k127_96378_0 TonB-dependent Receptor Plug Domain K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009695 380.0
LYD3_k127_96378_1 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000008049 271.0
LYD3_k127_96378_2 serine threonine protein kinase K08884,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000002246 263.0
LYD3_k127_96378_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000005788 69.0
LYD3_k127_96378_4 Transcription factor RfeF - - - 0.0000000001311 74.0
LYD3_k127_964846_0 Domain of unknown function (DUF4215) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000722 297.0
LYD3_k127_964846_1 Belongs to the P(II) protein family K04751 - - 0.000000000000000000000000000000000000000309 151.0
LYD3_k127_964846_2 oxidoreductase activity K07114 - - 0.0000001813 63.0
LYD3_k127_964846_3 WD40 repeats - - - 0.00001367 58.0
LYD3_k127_986905_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000005896 99.0