logo

Overview

ID MAG02385
Name MMD3_bin.2
Sample SMP0060
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Casimicrobiaceae
Genus VBCG01
Species
Assembly information
Completeness (%) 58.68
Contamination (%) 0.5
GC content (%) 70.0
N50 (bp) 5,295
Genome size (bp) 1,904,183

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1951

Gene name Description KEGG GOs EC E-value Score Sequence
MMD3_k127_1008959_0 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K12141 - - 7.476e-246 766.0
MMD3_k127_1008959_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 567.0
MMD3_k127_1008959_2 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000004513 237.0
MMD3_k127_1008959_3 hydrogenase 4 membrane K12140 - - 0.000000000000000000009597 92.0
MMD3_k127_1008959_4 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.000000000002576 74.0
MMD3_k127_1018960_0 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 426.0
MMD3_k127_1018960_1 His Kinase A (phosphoacceptor) domain K02484 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 357.0
MMD3_k127_1018960_2 response regulator K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004931 276.0
MMD3_k127_1018960_3 Copper chaperone PCu(A)C K09796 - - 0.000000000000000000000000000000000000001696 152.0
MMD3_k127_1018960_4 TIGRFAM yecA family protein K07039 - - 0.00000000000000000000000000000001264 136.0
MMD3_k127_1018960_5 GCN5-related N-acetyl-transferase K06975 - - 0.00000000000000000000000006967 109.0
MMD3_k127_1026923_0 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 1.446e-197 627.0
MMD3_k127_1026923_1 ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004492 289.0
MMD3_k127_1036645_0 ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 421.0
MMD3_k127_1036645_1 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 - - 0.0000000000000000000000000000000000000000000000000000000000008603 221.0
MMD3_k127_1036645_2 VacJ family lipoprotein K04754 - - 0.0000000000000000000000000000001497 127.0
MMD3_k127_1036645_3 Transport permease protein K01992 - - 0.0000000000000000000000000000001785 138.0
MMD3_k127_1036645_4 STAS domain K07122 - - 0.0001312 54.0
MMD3_k127_1037769_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 1.754e-294 927.0
MMD3_k127_1037769_1 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 426.0
MMD3_k127_1037769_2 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000004462 90.0
MMD3_k127_1054026_0 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 3.735e-236 739.0
MMD3_k127_1054026_1 Esterase PHB depolymerase K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000161 193.0
MMD3_k127_1054026_2 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000003408 152.0
MMD3_k127_1054026_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000004813 147.0
MMD3_k127_106782_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 2.086e-311 978.0
MMD3_k127_106782_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 415.0
MMD3_k127_106782_2 TIGRFAM Succinate dehydrogenase fumarate reductase iron-sulphur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 366.0
MMD3_k127_106782_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 295.0
MMD3_k127_106782_4 fumarate reductase respiratory complex transmembrane subunit K00246 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 289.0
MMD3_k127_106782_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000002293 213.0
MMD3_k127_106782_6 NADH dehydrogenase (ubiquinone) activity K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000000000000000000000000000000248 158.0
MMD3_k127_106782_7 Acyl-ACP thioesterase K07107 - - 0.00000008698 55.0
MMD3_k127_1078180_0 amp-dependent synthetase and ligase K00666 - - 5.692e-247 804.0
MMD3_k127_1078180_1 AAA domain - - - 3.721e-199 635.0
MMD3_k127_1078180_2 PhoQ Sensor - - - 0.0000000004798 73.0
MMD3_k127_1084199_0 RNB K01147 - 3.1.13.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000399 615.0
MMD3_k127_1084199_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 434.0
MMD3_k127_1084199_2 Nitrile hydratase, alpha chain K01721 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007925 288.0
MMD3_k127_1084199_3 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001744 284.0
MMD3_k127_1084199_4 Nitrile hydratase beta subunit - - - 0.0000000000000000000000000000000000000000000002493 181.0
MMD3_k127_1084199_5 TIGRFAM TonB family K03832 - - 0.000000000000000004231 91.0
MMD3_k127_1093990_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1041.0
MMD3_k127_1093990_1 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 467.0
MMD3_k127_1093990_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 357.0
MMD3_k127_1093990_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000003187 254.0
MMD3_k127_1093990_4 Lysin motif K06194 - - 0.00000000000000003141 89.0
MMD3_k127_1096813_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 443.0
MMD3_k127_1096813_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008082 381.0
MMD3_k127_1096813_2 Male sterility protein K22025 - 1.1.1.410 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005908 376.0
MMD3_k127_1096813_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000002924 229.0
MMD3_k127_1096813_4 Domain of unknown function (DUF4142) K08995 - - 0.000000000000000000000000000000000000000000000000000000000001667 222.0
MMD3_k127_1096813_5 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000002503 209.0
MMD3_k127_1096813_6 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.0000000000000000000000000000007136 138.0
MMD3_k127_1096813_7 PFAM blue (type 1) copper domain protein - - - 0.000000000000000004986 92.0
MMD3_k127_1110843_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1040.0
MMD3_k127_1110843_1 acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009058 532.0
MMD3_k127_1110843_2 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002784 302.0
MMD3_k127_1110843_3 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.0000000000000000000000000000000000000000001797 174.0
MMD3_k127_1120009_0 glycosyl transferase K07011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002059 259.0
MMD3_k127_1120009_1 COG0451 Nucleoside-diphosphate-sugar epimerases K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000005484 224.0
MMD3_k127_1120009_2 Belongs to the LDH2 MDH2 oxidoreductase family K00016 - 1.1.1.27 0.0000000000000000000000000000000004459 147.0
MMD3_k127_1135236_0 Metallopeptidase family M24 - - - 1.502e-209 657.0
MMD3_k127_1135236_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 375.0
MMD3_k127_1135236_2 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 299.0
MMD3_k127_1135236_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000003826 233.0
MMD3_k127_1135236_4 NMT1-like family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000001506 233.0
MMD3_k127_1135236_5 binding-protein-dependent transport systems inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000001626 211.0
MMD3_k127_1142674_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 470.0
MMD3_k127_1142674_1 helix_turn_helix ASNC type - - - 0.00000000000000000000000000000000000000000000002721 175.0
MMD3_k127_1142674_2 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.99.6 0.0000000000000000000000003756 119.0
MMD3_k127_1166989_0 Fumarate reduCtase - - - 5.137e-265 831.0
MMD3_k127_1166989_1 Phosphoribosyl synthetase-associated domain K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 387.0
MMD3_k127_1166989_2 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 364.0
MMD3_k127_1166989_3 Shikimate dehydrogenase substrate binding domain protein K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 345.0
MMD3_k127_1166989_4 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008682 280.0
MMD3_k127_1166989_5 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001939 266.0
MMD3_k127_1166989_6 - - - - 0.00000000000001673 81.0
MMD3_k127_1166989_7 AAA domain - - - 0.0000000007156 62.0
MMD3_k127_1170497_0 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000001761 246.0
MMD3_k127_1170497_1 Periplasmic binding protein K02016,K06858 - - 0.000000000000000000000000000000000000000000000001292 181.0
MMD3_k127_1170497_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family - - - 0.000000000000000000000002608 104.0
MMD3_k127_1170497_3 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000000000000000004889 104.0
MMD3_k127_1170513_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 1.066e-293 915.0
MMD3_k127_1170513_1 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 309.0
MMD3_k127_1170513_2 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000000000000000000003426 205.0
MMD3_k127_1170513_3 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000006703 113.0
MMD3_k127_1170513_4 Role in flagellar biosynthesis K02420 - - 0.00000000000000000000000001442 111.0
MMD3_k127_1170513_5 flagellar K02404 - - 0.000000000000000004345 85.0
MMD3_k127_1172255_0 Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2) K01484 - 3.5.3.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005921 520.0
MMD3_k127_1172255_1 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009531 312.0
MMD3_k127_1172255_2 Arginine N-succinyltransferase K00673 - 2.3.1.109 0.000000000000000000000000000000000000000003658 159.0
MMD3_k127_1190104_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005446 584.0
MMD3_k127_1190104_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 399.0
MMD3_k127_1199465_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 563.0
MMD3_k127_1199465_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008299 442.0
MMD3_k127_1199465_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000008037 221.0
MMD3_k127_1199465_3 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000009991 166.0
MMD3_k127_1199465_4 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000000000000000000029 123.0
MMD3_k127_1199465_5 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 GO:0003674,GO:0003824,GO:0004150,GO:0005488,GO:0005515,GO:0016829,GO:0016830,GO:0016832,GO:0042802 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000001741 93.0
MMD3_k127_1221520_0 Sigma-54 interaction domain protein K02667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000414 557.0
MMD3_k127_1221520_1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008018 374.0
MMD3_k127_1221520_2 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 359.0
MMD3_k127_1221520_3 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000001144 243.0
MMD3_k127_1221520_4 PFAM N-acetylmuramoyl-L-alanine amidase K03806 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000002786 263.0
MMD3_k127_1221520_5 probably involved in intracellular septation K06190 - - 0.0000000000000000000000000000000000000000000000000000000004672 206.0
MMD3_k127_1221520_6 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000002858 131.0
MMD3_k127_1221520_7 Belongs to the BolA IbaG family K05527 - - 0.00000000000000000000711 102.0
MMD3_k127_1221520_8 - K06950 - - 0.0006341 44.0
MMD3_k127_12418_0 ABC transporter transmembrane region K06147 - - 1.43e-270 846.0
MMD3_k127_12418_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 403.0
MMD3_k127_12418_2 PFAM Endonuclease exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 307.0
MMD3_k127_12418_3 PFAM peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001383 285.0
MMD3_k127_12418_4 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000651 221.0
MMD3_k127_12418_5 - - - - 0.000000000000000002131 99.0
MMD3_k127_1271165_0 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 1.382e-264 818.0
MMD3_k127_1271165_1 PFAM peptidase M3A and M3B thimet oligopeptidase F K01414 - 3.4.24.70 1.572e-264 831.0
MMD3_k127_1271165_2 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 - - 3.535e-205 649.0
MMD3_k127_1271165_3 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 428.0
MMD3_k127_1271165_4 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 384.0
MMD3_k127_1271165_5 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 346.0
MMD3_k127_1271165_6 Nucleotidyl transferase K00992 - 2.7.7.99 0.00000000000000000000000000000000000000000000000000000000000000000000000008976 262.0
MMD3_k127_1271165_7 Domain of unknown function (DUF4124) - - - 0.0000000000000000000002413 109.0
MMD3_k127_1271165_8 Domain of unknown function (DUF4124) - - - 0.00000000000000001043 89.0
MMD3_k127_1284724_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 7.672e-260 810.0
MMD3_k127_1284724_1 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000455 192.0
MMD3_k127_1284724_2 Belongs to the small heat shock protein (HSP20) family - - - 0.000000000000000000000000000000000000000006369 158.0
MMD3_k127_1284724_3 pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000004394 141.0
MMD3_k127_1291510_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 9.629e-239 752.0
MMD3_k127_1291510_1 PFAM PfkB domain protein K00856 - 2.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006336 281.0
MMD3_k127_1291510_2 Glycine cleavage system P-protein K00282 - 1.4.4.2 0.00000000000000000000000000000000000339 140.0
MMD3_k127_1291510_3 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000000002621 136.0
MMD3_k127_1300667_0 Acyl-CoA synthetase (NDP forming) K09181 GO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006979,GO:0008080,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0022607,GO:0032459,GO:0032462,GO:0034212,GO:0036211,GO:0043170,GO:0043254,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052858,GO:0061733,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564 - 0.0 1032.0
MMD3_k127_1300667_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000008006 196.0
MMD3_k127_130748_0 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 4.744e-280 870.0
MMD3_k127_130748_1 Tartrate K01677 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 443.0
MMD3_k127_130748_2 Fumarase C-terminus K01678,K03780 - 4.2.1.2,4.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311 307.0
MMD3_k127_130748_3 Formate dehydrogenase, alpha subunit K00123,K22015 - 1.17.1.9,1.17.99.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005215 267.0
MMD3_k127_130748_4 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001855 270.0
MMD3_k127_130748_5 EVE domain - - - 0.000000000000000000000000000000000000000000000000000000000000002685 221.0
MMD3_k127_130748_6 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein - - - 0.0000000000000000000000000000000000000000000000000000000000007534 211.0
MMD3_k127_130748_7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.0000000000000000000000000000000000139 145.0
MMD3_k127_130748_8 Succinate dehydrogenase/Fumarate reductase transmembrane subunit - - - 0.00000000000000000000000719 109.0
MMD3_k127_1311367_0 PFAM MoeA domain protein domain I and II K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 486.0
MMD3_k127_1311367_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000001276 134.0
MMD3_k127_1318072_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.093e-279 875.0
MMD3_k127_1318072_1 PFAM Type II secretion system protein E - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 520.0
MMD3_k127_1318072_2 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 451.0
MMD3_k127_1318072_3 Protein tyrosine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 289.0
MMD3_k127_1318072_4 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000000000000000000000000003355 205.0
MMD3_k127_1329371_0 PFAM phospholipase D Transphosphatidylase K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 540.0
MMD3_k127_1329371_1 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 288.0
MMD3_k127_1329371_2 PFAM Cold-shock protein, DNA-binding - - - 0.0000000000000000000000000000000000000000000000000007114 188.0
MMD3_k127_1329371_3 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000002905 128.0
MMD3_k127_1334383_0 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 576.0
MMD3_k127_1334383_1 Aldehyde dehydrogenase family K00128,K00154 - 1.2.1.3,1.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 541.0
MMD3_k127_1344106_0 PQQ enzyme repeat - - - 1.701e-294 913.0
MMD3_k127_1344106_1 TonB-dependent receptor K02014 - - 1.583e-235 757.0
MMD3_k127_1344106_10 Domain of unknown function (DUF1924) - - - 0.00000000000000000000000000000000000000007001 157.0
MMD3_k127_1344106_11 helix-turn-helix, Fis-type - - - 0.000000000000000000000000000000002333 141.0
MMD3_k127_1344106_12 Dihaem cytochrome c - - - 0.000000000000000000000000004585 122.0
MMD3_k127_1344106_2 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 599.0
MMD3_k127_1344106_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 467.0
MMD3_k127_1344106_4 PFAM ATP-binding region ATPase domain protein K07645 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009543 405.0
MMD3_k127_1344106_5 PFAM response regulator receiver K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 293.0
MMD3_k127_1344106_6 Belongs to the LDH2 MDH2 oxidoreductase family K13609,K16844 - 1.1.1.338,1.5.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000001767 265.0
MMD3_k127_1344106_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000006226 242.0
MMD3_k127_1344106_8 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000008619 238.0
MMD3_k127_1344106_9 Ankyrin repeats (3 copies) K06867,K21440 - - 0.000000000000000000000000000000000000000000000000003272 191.0
MMD3_k127_1346552_0 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 1.614e-201 647.0
MMD3_k127_1346552_1 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006118 603.0
MMD3_k127_1346552_10 KTSC domain - - - 0.000000000000000008516 89.0
MMD3_k127_1346552_11 helix_turn_helix multiple antibiotic resistance protein K06075 - - 0.00000000000004233 79.0
MMD3_k127_1346552_12 Putative neutral zinc metallopeptidase K07054 - - 0.0000000000002301 72.0
MMD3_k127_1346552_13 Periplasmic Protein - GO:0003674,GO:0004857,GO:0005575,GO:0005623,GO:0008150,GO:0009279,GO:0016020,GO:0019867,GO:0030234,GO:0030312,GO:0030313,GO:0031975,GO:0043086,GO:0044092,GO:0044462,GO:0044464,GO:0050790,GO:0060241,GO:0065007,GO:0065009,GO:0071944,GO:0098772 - 0.0000004094 57.0
MMD3_k127_1346552_2 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 578.0
MMD3_k127_1346552_3 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 343.0
MMD3_k127_1346552_4 neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 284.0
MMD3_k127_1346552_5 Cysteine-rich motif following a subset of SET domains K07117 - - 0.0000000000000000000000000000000000000000000002387 174.0
MMD3_k127_1346552_6 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000376 169.0
MMD3_k127_1346552_7 Hsp20/alpha crystallin family - - - 0.00000000000000000000000000000000000000004295 156.0
MMD3_k127_1346552_8 Chromate K07240 - - 0.0000000000000000000000000000000000001108 151.0
MMD3_k127_1346552_9 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000003362 89.0
MMD3_k127_1348689_1 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 426.0
MMD3_k127_1348689_2 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000005623 204.0
MMD3_k127_1348689_3 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000000009633 104.0
MMD3_k127_1348689_4 Protein of unknown function (DUF3460) - - - 0.0000000000002325 72.0
MMD3_k127_1351841_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005819 509.0
MMD3_k127_1351841_1 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003053 426.0
MMD3_k127_1351841_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 419.0
MMD3_k127_1351841_3 Aminotransferase class IV K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 372.0
MMD3_k127_1351841_4 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000000000000000001277 258.0
MMD3_k127_1351841_5 PFAM flavin reductase domain protein, FMN-binding - - - 0.00000000000000000000000000000000000000000006588 170.0
MMD3_k127_1351841_6 Belongs to the UPF0250 family K09158 - - 0.00000000000000001918 85.0
MMD3_k127_1351841_7 - - - - 0.000000003902 68.0
MMD3_k127_1352895_0 Bacterial extracellular solute-binding protein K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 578.0
MMD3_k127_1352895_1 Belongs to the mannitol dehydrogenase family K00040 - 1.1.1.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 516.0
MMD3_k127_1352895_2 abc transporter K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007608 459.0
MMD3_k127_1352895_3 PFAM binding-protein-dependent transport systems inner membrane component K02054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 434.0
MMD3_k127_1352895_4 PFAM binding-protein-dependent transport systems inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 408.0
MMD3_k127_1352895_5 FCD - - - 0.0000000000000000000000000000000001787 138.0
MMD3_k127_1367600_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 2.469e-226 712.0
MMD3_k127_1367600_1 Cys/Met metabolism PLP-dependent enzyme K01739,K01740 - 2.5.1.48,2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 561.0
MMD3_k127_1367600_2 membrane protein, TerC - - - 0.0000000000000000000000000000000000000000000000000001693 194.0
MMD3_k127_1367600_3 colicin v production K03558 - - 0.00000000000000000000000004777 115.0
MMD3_k127_1367600_4 protein conserved in bacteria K03749 - - 0.0000000001598 69.0
MMD3_k127_1368537_0 abc transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 554.0
MMD3_k127_1368537_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 410.0
MMD3_k127_1368537_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 358.0
MMD3_k127_1368537_3 Patatin phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 348.0
MMD3_k127_1368537_4 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 295.0
MMD3_k127_1368537_5 ABC-type branched-chain amino acid transport K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003099 258.0
MMD3_k127_1368537_7 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000002594 81.0
MMD3_k127_1372050_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 521.0
MMD3_k127_1372050_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000001734 246.0
MMD3_k127_1372050_2 TilS substrate binding domain K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000002899 181.0
MMD3_k127_1372050_3 Type IV pilus biogenesis stability protein PilW K02656 - - 0.00000000000000000000000000000000000000000000008314 190.0
MMD3_k127_1372050_4 Domain of unknown function (DUF4115) K15539 - - 0.000000000000000005864 91.0
MMD3_k127_1376020_0 ATPase FliI YscN family K02412 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 579.0
MMD3_k127_1376020_1 The M ring may be actively involved in energy transduction K02409 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 475.0
MMD3_k127_1376020_2 FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 317.0
MMD3_k127_1376020_3 Flagellar biosynthesis type III secretory pathway protein K02411 - - 0.0000000000000000000000000000000000000007812 161.0
MMD3_k127_1376020_4 Flagellar hook-basal body K02408 - - 0.000000000000000000006194 94.0
MMD3_k127_1376020_5 Flagellar FliJ protein K02413 - - 0.000000002408 64.0
MMD3_k127_1376851_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 - 6.3.5.3 8.894e-264 828.0
MMD3_k127_1376851_1 Tripartite tricarboxylate transporter TctA family - - - 1.205e-219 691.0
MMD3_k127_1376851_2 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 7.558e-199 632.0
MMD3_k127_1376851_3 Phenylacetic acid degradation protein PaaY K02617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003407 301.0
MMD3_k127_1376851_4 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000000002962 124.0
MMD3_k127_1382705_0 MotA TolQ ExbB proton channel K03562 - - 0.000000000000000000000000000000000000000000000000000000000001048 211.0
MMD3_k127_1382705_1 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.000000000000000000000000000000000003569 144.0
MMD3_k127_1382705_2 Cell division and transport-associated protein TolA K03646 - - 0.000000000000000000000000000000000004279 153.0
MMD3_k127_1382705_3 - - - - 0.0000000000004182 77.0
MMD3_k127_1385896_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 1.396e-296 931.0
MMD3_k127_1385896_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 365.0
MMD3_k127_1385896_2 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K15022 - 1.17.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 316.0
MMD3_k127_140067_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008801 602.0
MMD3_k127_140067_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001443 280.0
MMD3_k127_140067_2 tellurite resistance protein - - - 0.00000000000000000000000000000000000000000000000000001603 193.0
MMD3_k127_140067_3 Tautomerase enzyme - - - 0.0000000000000000000000000000000000000000000000000002904 187.0
MMD3_k127_1407196_0 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003834 301.0
MMD3_k127_1407196_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008069 301.0
MMD3_k127_1407196_2 Protein of unknown function (DUF3047) - - - 0.0000000000000000000000000000000000000000000000000000000000006783 224.0
MMD3_k127_1407196_3 RDD family - - - 0.000000000000000008485 92.0
MMD3_k127_1407196_4 Protein of unknown function (DUF3106) - - - 0.0003006 46.0
MMD3_k127_1416708_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1289.0
MMD3_k127_1416708_1 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002769 460.0
MMD3_k127_1416708_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008497 334.0
MMD3_k127_1416708_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000003327 170.0
MMD3_k127_1416708_4 Psort location CytoplasmicMembrane, score - - - 0.00000000000000298 83.0
MMD3_k127_1416708_5 DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 - - 0.00005974 51.0
MMD3_k127_1416708_6 - - - - 0.0007209 48.0
MMD3_k127_1418528_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 484.0
MMD3_k127_1418528_1 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 364.0
MMD3_k127_1418528_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 285.0
MMD3_k127_1418528_3 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000003164 206.0
MMD3_k127_1449503_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 3.539e-305 957.0
MMD3_k127_1449503_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 520.0
MMD3_k127_1449503_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002331 302.0
MMD3_k127_1449503_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005857 264.0
MMD3_k127_1464407_0 Peptidase family M13 - - - 3.2e-288 899.0
MMD3_k127_1464407_1 Peptidase dimerisation domain K13049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003493 568.0
MMD3_k127_1464407_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000003379 207.0
MMD3_k127_1464407_3 DSBA-like thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000008329 194.0
MMD3_k127_1464407_4 - - - - 0.0000000000000000000000001399 113.0
MMD3_k127_1464407_5 - - - - 0.0000000000000000007337 87.0
MMD3_k127_1475471_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000757 569.0
MMD3_k127_1475471_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 496.0
MMD3_k127_1475471_2 pilus assembly protein FimV K08086 - - 0.00000000000005859 76.0
MMD3_k127_1485868_0 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 414.0
MMD3_k127_1485868_1 Short chain dehydrogenase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004185 348.0
MMD3_k127_1485868_2 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 357.0
MMD3_k127_1504087_0 Putative modulator of DNA gyrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 596.0
MMD3_k127_1504087_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 565.0
MMD3_k127_1504087_2 Putative modulator of DNA gyrase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005758 449.0
MMD3_k127_1504087_3 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000004409 154.0
MMD3_k127_1504087_4 - - - - 0.000000000000000000000000000004629 130.0
MMD3_k127_1504087_5 Belongs to the sulfur carrier protein TusA family - - - 0.0000000000000000000000003169 116.0
MMD3_k127_1506246_0 5-oxoprolinase K01469,K01473 - 3.5.2.14,3.5.2.9 0.0 1710.0
MMD3_k127_1506246_1 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007981 533.0
MMD3_k127_1506246_2 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 497.0
MMD3_k127_1506246_3 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 442.0
MMD3_k127_1506246_4 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 374.0
MMD3_k127_1506246_5 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003052 271.0
MMD3_k127_1506246_6 Glutathione peroxidase K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000002002 243.0
MMD3_k127_1506246_7 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.0000000000000000000000000000000000000000000001283 173.0
MMD3_k127_1518609_0 AcyL-CoA dehydrogenase K06445 - - 0.0 1050.0
MMD3_k127_1518609_1 GMC oxidoreductase - - - 4.536e-205 662.0
MMD3_k127_1518609_2 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004067 252.0
MMD3_k127_1518609_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000009262 182.0
MMD3_k127_1518609_4 - - - - 0.00000000000000000000000000000000000000005087 161.0
MMD3_k127_1518609_5 twin-arginine translocation pathway signal protein - - - 0.00000000000000000000000000005776 133.0
MMD3_k127_1518609_6 polyhydroxyalkanoic acid system protein - - - 0.000000000000000000004514 97.0
MMD3_k127_1526331_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 6.67e-273 848.0
MMD3_k127_1526331_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 593.0
MMD3_k127_1526331_2 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 468.0
MMD3_k127_1526331_3 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 436.0
MMD3_k127_1537036_0 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000907 565.0
MMD3_k127_1537036_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000001001 156.0
MMD3_k127_1537036_2 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000965 168.0
MMD3_k127_1537036_3 Protein of unknown function (DUF3306) - - - 0.0000000000000000003898 98.0
MMD3_k127_1537036_4 Protein of unknown function (DUF3305) - - - 0.00000000002128 65.0
MMD3_k127_1541739_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 7.503e-223 695.0
MMD3_k127_1541739_1 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 316.0
MMD3_k127_1541739_2 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000003674 230.0
MMD3_k127_1541739_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000002259 86.0
MMD3_k127_1541739_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000003521 95.0
MMD3_k127_1557279_0 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 4.971e-213 672.0
MMD3_k127_1557279_1 riboflavin synthase, alpha K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000001458 217.0
MMD3_k127_1557279_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000104 126.0
MMD3_k127_1573190_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 598.0
MMD3_k127_1573190_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 565.0
MMD3_k127_1573190_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 333.0
MMD3_k127_1573190_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000001611 240.0
MMD3_k127_1573190_4 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000004314 180.0
MMD3_k127_1573190_5 FR47-like protein - - - 0.000000000000000000000000000000000000000000001027 182.0
MMD3_k127_1573190_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000003255 156.0
MMD3_k127_1573190_7 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000156 150.0
MMD3_k127_1573190_8 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000001276 122.0
MMD3_k127_1573190_9 Modulates RecA activity K03565 - - 0.000000000000000000006753 100.0
MMD3_k127_1581833_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.274e-251 790.0
MMD3_k127_1581833_1 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 8.888e-232 721.0
MMD3_k127_1581833_2 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 372.0
MMD3_k127_1581833_3 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 340.0
MMD3_k127_1581833_4 PFAM flavin reductase domain protein, FMN-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000289 262.0
MMD3_k127_1581833_5 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000001022 173.0
MMD3_k127_161949_0 (ABC) transporter K01995 - - 1.985e-217 694.0
MMD3_k127_161949_1 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000123 158.0
MMD3_k127_161949_2 ABC transporter K01996 - - 0.000000000000000000000000000000000001202 141.0
MMD3_k127_1640794_0 peptidase m48, ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 432.0
MMD3_k127_1640794_1 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000003183 210.0
MMD3_k127_1640794_2 response regulator K02479,K07684 - - 0.000000000000000000002186 100.0
MMD3_k127_1640794_3 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.00000000000000000001199 91.0
MMD3_k127_1665367_0 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 5.377e-232 726.0
MMD3_k127_1665367_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 360.0
MMD3_k127_1665367_2 Bacterial protein of unknown function (DUF937) - - - 0.0000000000000000000000000000006243 126.0
MMD3_k127_1665367_3 Cyclic nucleotide-monophosphate binding domain K10914 - - 0.0002643 43.0
MMD3_k127_1693211_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 1.045e-208 679.0
MMD3_k127_1693211_1 Periplasmic binding protein domain K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 514.0
MMD3_k127_1693211_10 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000257 195.0
MMD3_k127_1693211_11 Protein of unknown function (DUF2970) - - - 0.00000098 55.0
MMD3_k127_1693211_2 Gentisate 1,2-dioxygenase K00450 - 1.13.11.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 517.0
MMD3_k127_1693211_3 Rhodanese Homology Domain K06917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 374.0
MMD3_k127_1693211_4 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 345.0
MMD3_k127_1693211_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 286.0
MMD3_k127_1693211_6 PBP superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003249 285.0
MMD3_k127_1693211_7 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008669 292.0
MMD3_k127_1693211_8 PFAM ABC transporter related K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000008956 258.0
MMD3_k127_1693211_9 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000001799 222.0
MMD3_k127_1701476_0 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007772 302.0
MMD3_k127_1701476_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007464 285.0
MMD3_k127_1701476_2 UPF0761 membrane protein K07058 - - 0.00000000000000000000000000000000000000000001979 170.0
MMD3_k127_1701476_3 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000004621 143.0
MMD3_k127_1701476_4 Biopolymer transport protein K03559 - - 0.0000000000000000000000000000000000006548 143.0
MMD3_k127_1701509_0 PFAM Peptidoglycan-binding LysM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 310.0
MMD3_k127_1701509_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 286.0
MMD3_k127_1701509_2 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004115 285.0
MMD3_k127_1701509_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000002377 230.0
MMD3_k127_1727792_0 carboxylase K01969 - 6.4.1.4 1.455e-278 879.0
MMD3_k127_1727792_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 510.0
MMD3_k127_1727792_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003807 282.0
MMD3_k127_1727792_3 2-hydroxychromene-2-carboxylate isomerase - - - 0.00000000000003192 83.0
MMD3_k127_1732807_0 AAA domain K03582 - 3.1.11.5 1.9e-304 963.0
MMD3_k127_1732807_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.00000000000000000000000000000005434 133.0
MMD3_k127_174700_0 helicase K03657 - 3.6.4.12 3.26e-282 885.0
MMD3_k127_174700_1 Oxidoreductase NAD-binding domain K15511 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005693 609.0
MMD3_k127_174700_2 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 288.0
MMD3_k127_174700_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003095 250.0
MMD3_k127_174700_4 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 0.00000000000000000006684 90.0
MMD3_k127_174700_5 - - - - 0.000002145 53.0
MMD3_k127_1761943_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 2.452e-198 627.0
MMD3_k127_1761943_1 protocatechuate 3,4-dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 424.0
MMD3_k127_1761943_2 Coenzyme A transferase K01031 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008138 364.0
MMD3_k127_1761943_3 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01032 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 349.0
MMD3_k127_1761943_4 protocatechuate 3,4-dioxygenase K00448 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 355.0
MMD3_k127_1761943_5 PFAM Xylose isomerase domain protein TIM barrel K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000007453 237.0
MMD3_k127_1761943_6 3-carboxy-cis,cis-muconate cycloisomerase K01857 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.5.1.2 0.00000000000007929 75.0
MMD3_k127_1764855_0 Belongs to the citrate synthase family K01659 - 2.3.3.5 1.562e-205 647.0
MMD3_k127_1764855_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 541.0
MMD3_k127_1764855_2 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K01841,K03417 - 4.1.3.30,5.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004449 459.0
MMD3_k127_1764855_3 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001879 408.0
MMD3_k127_1764855_4 2-methylcitrate dehydratase K01720 - 4.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 338.0
MMD3_k127_1764855_5 GntR family K03710 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 297.0
MMD3_k127_1764855_6 Succinate dehydrogenase, hydrophobic K00242 - - 0.0000000000000000000000000000000008475 139.0
MMD3_k127_1764855_7 succinate dehydrogenase, cytochrome b subunit K00241 - - 0.000000000000000000000000000006006 123.0
MMD3_k127_1780917_0 PFAM extracellular solute-binding protein, family 5 K02035,K13889 - - 1.494e-241 760.0
MMD3_k127_1780917_1 Belongs to the ABC transporter superfamily K02031,K02032,K13892 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007118 553.0
MMD3_k127_1780917_2 ABC-type dipeptide oligopeptide nickel transport systems, permease components K13890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 505.0
MMD3_k127_1780917_3 PFAM binding-protein-dependent transport systems inner membrane component K13891 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 475.0
MMD3_k127_1780917_4 D-aminopeptidase K16203 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009814 240.0
MMD3_k127_1785037_0 TIR domain - - - 0.000000000000000000000008658 119.0
MMD3_k127_1785037_1 domain, Protein - - - 0.000000000000000000006647 109.0
MMD3_k127_1793517_0 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 449.0
MMD3_k127_1793517_1 Protein of unknown function (DUF2868) - - - 0.0000000000000000000000000000000000000000000000000000000000000002113 248.0
MMD3_k127_1793517_2 Protein of unknown function (DUF1761) - - - 0.00004969 53.0
MMD3_k127_1806762_0 Putative modulator of DNA gyrase K03568 - - 1.077e-216 682.0
MMD3_k127_1806762_1 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000000000000000005717 188.0
MMD3_k127_1806762_2 DsrE/DsrF-like family - - - 0.0000000000000000000000000000000000000000000009594 171.0
MMD3_k127_1813946_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01531,K01535 - 3.6.3.2,3.6.3.6 0.0 1047.0
MMD3_k127_1813946_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.44e-275 872.0
MMD3_k127_1813946_2 Pyrimidine nucleoside phosphorylase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008458 576.0
MMD3_k127_1813946_3 MASE1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002833 366.0
MMD3_k127_1813946_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000002171 196.0
MMD3_k127_1813946_5 Flagellar regulatory protein FleQ - - - 0.0000000000000000000000000000000000000000000000000005754 195.0
MMD3_k127_1813946_6 - - - - 0.000000000000000000000000000000003167 130.0
MMD3_k127_1813946_7 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000001097 124.0
MMD3_k127_1813946_8 Universal stress protein - - - 0.000000000000000000005134 108.0
MMD3_k127_1813946_9 Cytochrome c, class I K08738 - - 0.0000002987 63.0
MMD3_k127_1818846_0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007617 566.0
MMD3_k127_1818846_1 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000001013 161.0
MMD3_k127_1818846_2 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.000000000000000000000000000000000000001044 155.0
MMD3_k127_1822862_0 Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) K03669 GO:0005575,GO:0016020 - 1.526e-231 731.0
MMD3_k127_1822862_1 Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) K03670 - - 1.69e-231 730.0
MMD3_k127_1822862_2 iron ion homeostasis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008165 535.0
MMD3_k127_1829706_0 PFAM ATP-binding region, ATPase domain protein K02486 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 434.0
MMD3_k127_1829706_1 Bacterial regulatory proteins, luxR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006118 271.0
MMD3_k127_1857391_0 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326 392.0
MMD3_k127_1857391_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006042 278.0
MMD3_k127_1857391_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000001426 268.0
MMD3_k127_1857391_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000000000000006517 213.0
MMD3_k127_1857391_4 peptidase S16 K07157 - - 0.000000000000000000000000002218 115.0
MMD3_k127_1867817_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005663 445.0
MMD3_k127_1867817_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000645 422.0
MMD3_k127_1867817_2 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001103 246.0
MMD3_k127_1867817_3 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000002935 188.0
MMD3_k127_1867817_4 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.000000000000000000000000000000000000774 148.0
MMD3_k127_1973669_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 350.0
MMD3_k127_1973669_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 312.0
MMD3_k127_1973669_2 Transglycosylase SLT domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000006574 231.0
MMD3_k127_1973669_3 PFAM Glycosyl transferase family 2 - - - 0.000003557 59.0
MMD3_k127_1973669_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0002790,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006457,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032991,GO:0033036,GO:0033220,GO:0034613,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042802,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061077,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.000006235 58.0
MMD3_k127_2009052_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 6.092e-206 658.0
MMD3_k127_2009052_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 528.0
MMD3_k127_2009052_2 PFAM UBA THIF-type NAD FAD binding protein K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000008801 244.0
MMD3_k127_2009052_3 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000002153 134.0
MMD3_k127_2009052_4 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000004163 137.0
MMD3_k127_2009052_5 Bacterial SH3 domain - - - 0.00000000000000000000000000000072 131.0
MMD3_k127_2009052_6 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.0000000000000000000000000008041 132.0
MMD3_k127_2009052_7 Psort location Cytoplasmic, score 8.96 K00057 - 1.1.1.94 0.000000001463 71.0
MMD3_k127_2009052_8 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0003443 44.0
MMD3_k127_2015739_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 4.109e-290 901.0
MMD3_k127_2015739_1 - - - - 0.00000000000001001 85.0
MMD3_k127_201697_0 Ubiquinone biosynthesis hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007935 334.0
MMD3_k127_201697_1 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 295.0
MMD3_k127_201697_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 283.0
MMD3_k127_201697_3 Disulfide bond isomerase protein N-terminus K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000000003965 232.0
MMD3_k127_201697_4 Belongs to the anti-sigma-factor antagonist family - - - 0.000000000000000000000000000000000000002832 162.0
MMD3_k127_201697_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K16216 - 1.1.1.320 0.00000001067 63.0
MMD3_k127_2019565_0 Malic enzyme, NAD binding domain K00027,K00029 - 1.1.1.38,1.1.1.40 7.173e-205 657.0
MMD3_k127_2019565_1 Sodium:sulfate symporter transmembrane region K11106,K14445 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008037 249.0
MMD3_k127_2019565_2 Cupin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001293 240.0
MMD3_k127_2019565_3 OsmC-like protein - - - 0.000000000000000000000000000000000000000000000000000258 190.0
MMD3_k127_2019565_4 TupA-like ATPgrasp - - - 0.00000000000000000000000000000000000000000000000009259 190.0
MMD3_k127_2019565_5 Glutamine amido-transferase - - - 0.00000000000000000000009116 101.0
MMD3_k127_2028197_0 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 423.0
MMD3_k127_2028197_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000461 353.0
MMD3_k127_2028197_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 349.0
MMD3_k127_2028197_3 STAS domain K06378 - - 0.00000000000000000000003837 103.0
MMD3_k127_2043926_0 enoyl-CoA hydratase K15513 - 4.1.2.44 2.277e-265 843.0
MMD3_k127_2043926_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 579.0
MMD3_k127_2043926_2 Drug metabolite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008468 385.0
MMD3_k127_2043926_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K15546 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 359.0
MMD3_k127_2043926_4 Molybdate transporter of MFS superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005215 279.0
MMD3_k127_2043926_5 GntR family transcriptional regulator K15977 - - 0.000000000000000000000000000000000000001741 156.0
MMD3_k127_2046367_0 PFAM ABC transporter K06158 - - 2.001e-218 696.0
MMD3_k127_2046367_1 Acetyl-coenzyme A transporter 1 K08218 - - 9.465e-194 610.0
MMD3_k127_2046367_2 ABC transporter K06020 - 3.6.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002393 546.0
MMD3_k127_2046367_3 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 376.0
MMD3_k127_2046367_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 295.0
MMD3_k127_2046367_5 ABC transporter K06020 - 3.6.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004077 277.0
MMD3_k127_2046367_6 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000006383 247.0
MMD3_k127_2046367_7 Domain of unknown function (DUF4124) - - - 0.00000000000000004541 95.0
MMD3_k127_2046468_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1109.0
MMD3_k127_2046468_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 5.058e-214 671.0
MMD3_k127_2046468_2 recombinase XerD K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 369.0
MMD3_k127_2046468_3 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000000000000000000000002885 103.0
MMD3_k127_204895_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 6.873e-285 884.0
MMD3_k127_204895_1 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 495.0
MMD3_k127_204895_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K21416 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004334 473.0
MMD3_k127_204895_3 e3 binding domain K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 333.0
MMD3_k127_2056639_0 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 9.606e-214 679.0
MMD3_k127_2056639_1 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 364.0
MMD3_k127_2058612_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 7.129e-226 719.0
MMD3_k127_2058612_1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008891 520.0
MMD3_k127_2058612_2 TIGRFAM histidinol-phosphate phosphatase family protein K03273 - 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000002894 266.0
MMD3_k127_2058612_3 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000003066 248.0
MMD3_k127_2058612_4 Metal-dependent hydrolase K07043 - - 0.0000000000000000000000000000000000000000000001129 186.0
MMD3_k127_2058612_5 Belongs to the frataxin K06202 - - 0.0000000000000000000005569 99.0
MMD3_k127_209915_0 AMP-binding enzyme C-terminal domain K18661 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 597.0
MMD3_k127_209915_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005375 480.0
MMD3_k127_209915_2 Carboxyl transferase domain K13932 - 4.1.1.87 0.00000000000000000000000000000000001225 158.0
MMD3_k127_2144099_0 due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm K01869 - 6.1.1.4 1.238e-248 779.0
MMD3_k127_2144099_1 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000615 310.0
MMD3_k127_2144099_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 299.0
MMD3_k127_2144099_3 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000000000000000003765 128.0
MMD3_k127_2195523_0 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008447 443.0
MMD3_k127_2195523_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058,K16843 - 1.1.1.310,1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 381.0
MMD3_k127_2195523_2 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 346.0
MMD3_k127_2195523_3 glyoxalase bleomycin resistance protein dioxygenase K06991 - - 0.000000000000000000000000000000000000000000000000003326 201.0
MMD3_k127_2195523_4 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.000000000000000000000000001143 115.0
MMD3_k127_224602_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000706 541.0
MMD3_k127_224602_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002318 294.0
MMD3_k127_224602_2 cobalamin synthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008958 268.0
MMD3_k127_224602_3 ABC transporter related K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003835 261.0
MMD3_k127_224602_4 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007856 261.0
MMD3_k127_224602_5 ABC transporter, substrate-binding protein, aliphatic sulfonates family K02051 - - 0.00000000000001813 87.0
MMD3_k127_224602_6 PFAM binding-protein-dependent transport systems inner membrane component - - - 0.00000007949 64.0
MMD3_k127_2257724_0 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006624 428.0
MMD3_k127_2257724_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 323.0
MMD3_k127_2257724_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.000000000000000000000000000000000000000000000000000000000000000000003775 239.0
MMD3_k127_2257724_3 Part of a membrane complex involved in electron transport K03616 - - 0.00000000000000000000000000000000000000000000000000000000000000000004466 236.0
MMD3_k127_2257724_4 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000003317 195.0
MMD3_k127_2257724_5 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000011 194.0
MMD3_k127_2257724_6 Domain of unknown function (DUF1841) - - - 0.0000000000000000000000000000000000000000000000006893 182.0
MMD3_k127_2257724_7 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.00000000000000000000000000000000000000000000008498 172.0
MMD3_k127_2257724_8 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000006098 122.0
MMD3_k127_2257724_9 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000003394 108.0
MMD3_k127_2276321_0 PFAM Cysteine-rich - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006196 609.0
MMD3_k127_2276321_1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 599.0
MMD3_k127_2276321_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009122 291.0
MMD3_k127_2276321_3 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000001099 231.0
MMD3_k127_2276321_4 nitrate reductase activity - - - 0.00000000000000000000000000000000000000000000000000000002603 205.0
MMD3_k127_2276321_5 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000000000003472 183.0
MMD3_k127_2276321_6 Protein of unknown function (DUF2892) - - - 0.00000000000000000005697 91.0
MMD3_k127_2276321_7 P pilus assembly Cpx signaling pathway, periplasmic inhibitor zinc-resistance associated protein K06006 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006457,GO:0008150,GO:0009987,GO:0010033,GO:0014070,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0044464,GO:0050896,GO:0051082,GO:0061077,GO:1990507 - 0.0000000000001543 80.0
MMD3_k127_2290041_0 Peptidase M48 K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 451.0
MMD3_k127_2290041_1 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 283.0
MMD3_k127_2290041_2 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000272 276.0
MMD3_k127_2290041_3 Nudix N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001585 268.0
MMD3_k127_2290041_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000001945 270.0
MMD3_k127_2290041_5 Thioesterase superfamily K07107 - - 0.0000000000000000000000000000001503 126.0
MMD3_k127_2290041_6 Cytochrome c - - - 0.0000000000000000000000003577 108.0
MMD3_k127_2290041_7 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000005558 118.0
MMD3_k127_2290041_8 Domain of unknown function (DUF1850) - - - 0.00000000006606 64.0
MMD3_k127_2294901_0 Ferrous iron transport protein B C terminus K04759 - - 1.593e-203 642.0
MMD3_k127_2294901_1 LD-carboxypeptidase K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000156 288.0
MMD3_k127_2294901_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.00000000000000000000000000000000000000000000000000000000006745 209.0
MMD3_k127_2294901_3 - - - - 0.000000000000000000000000000003731 124.0
MMD3_k127_2294901_4 - - - - 0.00004876 49.0
MMD3_k127_2298435_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 370.0
MMD3_k127_2298435_1 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000000004565 236.0
MMD3_k127_2298435_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000001193 96.0
MMD3_k127_2298435_3 general secretion pathway protein K02457 - - 0.00000000004639 70.0
MMD3_k127_2298435_4 General secretion pathway protein I K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.0000000118 59.0
MMD3_k127_2299365_0 DEAD/H associated K03724 - - 0.0 1806.0
MMD3_k127_2299365_1 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003481 265.0
MMD3_k127_2299365_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000004305 138.0
MMD3_k127_2299365_3 Dodecin K09165 - - 0.000000000000000000000000003608 115.0
MMD3_k127_2299365_4 transcriptional regulator - - - 0.000000001885 68.0
MMD3_k127_2319899_0 Glycolate oxidase subunit GlcD K00104 - 1.1.3.15 1.277e-204 645.0
MMD3_k127_2319899_1 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 479.0
MMD3_k127_2319899_2 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 439.0
MMD3_k127_2319899_3 Sugar (and other) transporter K07552 - - 0.000000000000000000000000000000000000000000000000012 190.0
MMD3_k127_2319899_4 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.0000000000000000000000000000000000000000004645 165.0
MMD3_k127_2319899_5 - - - - 0.00000000000000002832 91.0
MMD3_k127_2352905_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00018,K00058 - 1.1.1.29,1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 471.0
MMD3_k127_2352905_1 cell septum assembly - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006882 243.0
MMD3_k127_2352905_2 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000005637 229.0
MMD3_k127_2352905_3 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000008137 159.0
MMD3_k127_2363982_0 FAD linked oxidase domain protein - - - 0.0 1591.0
MMD3_k127_2363982_1 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.0000000000000000000005335 99.0
MMD3_k127_2369788_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 591.0
MMD3_k127_237586_0 PFAM alanine racemase domain protein K19967 - 4.1.2.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 405.0
MMD3_k127_237586_1 aspartyl asparaginyl beta-hydroxylase K12979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 385.0
MMD3_k127_237586_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 336.0
MMD3_k127_237586_3 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000000000006734 183.0
MMD3_k127_237586_4 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.000000000000000000000000000000000000000000000003123 182.0
MMD3_k127_237586_5 Secreted repeat of unknown function - - - 0.000000000000000000000000000000000000000000001887 170.0
MMD3_k127_237586_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000002196 160.0
MMD3_k127_2387706_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 526.0
MMD3_k127_2387706_1 Phosphotransferase enzyme family K00899 - 2.7.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 390.0
MMD3_k127_2387706_2 ACT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006774 403.0
MMD3_k127_2387706_3 Protein of unknown function (DUF3750) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002921 260.0
MMD3_k127_2387706_4 PFAM oxidoreductase domain protein K19181 - 1.1.1.292 0.00000000000000000000000000000000000000000000000000000000005165 207.0
MMD3_k127_2392172_0 poly(R)-hydroxyalkanoic acid synthase K03821 - - 1.614e-260 818.0
MMD3_k127_2392172_1 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000001259 239.0
MMD3_k127_2392172_2 esterase K12686 - - 0.0000000000000000000000000000000000000000000000000000000000000000001445 244.0
MMD3_k127_2392172_3 17 kDa surface antigen - - - 0.00000000000000000000001047 110.0
MMD3_k127_2392277_0 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003964 448.0
MMD3_k127_2392277_1 molybdenum cofactor K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 284.0
MMD3_k127_2392277_2 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001606 246.0
MMD3_k127_2392277_3 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000001734 246.0
MMD3_k127_2392277_4 Belongs to the UPF0307 family K09889 - - 0.00000000000000000000000000000000004791 139.0
MMD3_k127_2395835_0 Coenzyme F390 synthetase K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 569.0
MMD3_k127_2395835_1 branched-chain amino acid K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008057 445.0
MMD3_k127_2395835_2 helix_turn_helix, cAMP Regulatory protein K10914 - - 0.0000000000000000000000000000000000000000000000000000000003342 210.0
MMD3_k127_2395835_3 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000001278 138.0
MMD3_k127_2406698_0 dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes - - - 4.194e-298 928.0
MMD3_k127_2406698_1 Protein of unknown function (DUF1298) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 471.0
MMD3_k127_2406698_2 PFAM poly granule associated family protein - - - 0.000000000000000000000000001752 120.0
MMD3_k127_2406698_3 PFAM acyl-coA-binding protein, ACBP - - - 0.00000000000000000000001561 106.0
MMD3_k127_243779_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 3.891e-219 699.0
MMD3_k127_243779_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003181 435.0
MMD3_k127_2464589_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 1.152e-231 730.0
MMD3_k127_2464589_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006728 323.0
MMD3_k127_2464589_2 Domain of unknown function (DUF4124) - - - 0.00000000002574 73.0
MMD3_k127_2479020_0 3-hydroxyacyl-coa dehydrogenase K07516 - 1.1.1.35 4.1e-302 947.0
MMD3_k127_2479020_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 543.0
MMD3_k127_2479020_10 - - - - 0.000000000000000005822 93.0
MMD3_k127_2479020_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 419.0
MMD3_k127_2479020_3 LysM domain protein K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 406.0
MMD3_k127_2479020_4 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 306.0
MMD3_k127_2479020_5 PFAM Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001067 259.0
MMD3_k127_2479020_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000002123 233.0
MMD3_k127_2479020_7 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.000000000000000000000000000000000000000000000000005315 188.0
MMD3_k127_2479020_8 Chalcone isomerase-like - - - 0.0000000000000000000000000000000002942 151.0
MMD3_k127_2479020_9 Tetratricopeptide repeat - - - 0.00000000000000000000000000461 114.0
MMD3_k127_2503169_0 Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 564.0
MMD3_k127_2503169_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 377.0
MMD3_k127_2503169_2 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 333.0
MMD3_k127_2503169_3 Cytochrome c - - - 0.0000000000000000006262 98.0
MMD3_k127_2503169_4 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.0000000001216 64.0
MMD3_k127_2514152_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1112.0
MMD3_k127_2514152_1 Fumarylacetoacetase N-terminal K01555 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 570.0
MMD3_k127_2514152_2 XdhC and CoxI family K07402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 328.0
MMD3_k127_2514152_3 Diguanylate cyclase K03320 - - 0.0000000000000000000000000000001764 125.0
MMD3_k127_2514152_4 Chromate resistance exported protein - - - 0.0000002624 57.0
MMD3_k127_2529108_0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07666,K07774 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001268 274.0
MMD3_k127_2529108_1 Protein of unknown function (DUF1223) - - - 0.0000000000000000000000000000000000000007382 159.0
MMD3_k127_2548957_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 546.0
MMD3_k127_2548957_1 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 444.0
MMD3_k127_2548957_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004041 409.0
MMD3_k127_2548957_3 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000001808 143.0
MMD3_k127_2560580_0 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 3.982e-257 812.0
MMD3_k127_2560580_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 6.692e-234 734.0
MMD3_k127_2560580_2 Belongs to the thiolase family K00626 - 2.3.1.9 1.066e-206 648.0
MMD3_k127_2575017_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 2.298e-283 885.0
MMD3_k127_2575017_1 Serine threonine protein kinase K08282 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000004057 238.0
MMD3_k127_2575017_2 Belongs to the GST superfamily K00799 - 2.5.1.18 0.000000000000000000000000000000001776 137.0
MMD3_k127_2575017_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000001387 119.0
MMD3_k127_2575017_4 Belongs to the ABC transporter superfamily K10112 - - 0.000000000000000000000000007666 113.0
MMD3_k127_2575017_5 Cytochrome c - - - 0.00000000000000000000005108 105.0
MMD3_k127_257931_0 Malic enzyme K00029 - 1.1.1.40 0.0 1075.0
MMD3_k127_257931_1 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004765 499.0
MMD3_k127_257931_2 Cytochrome c-type biogenesis protein K02200 - - 0.000000000000000000000000000000000000001954 159.0
MMD3_k127_2580250_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 1.37e-233 741.0
MMD3_k127_2580250_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 2.324e-199 633.0
MMD3_k127_2580250_2 - - - - 0.0000000000002003 73.0
MMD3_k127_2580250_3 ATP synthase subunit D K02120 - - 0.000009392 54.0
MMD3_k127_260545_0 STAS domain K03321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003245 571.0
MMD3_k127_260545_1 binding-protein-dependent transport systems inner membrane component K02050,K15552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002046 391.0
MMD3_k127_260545_2 Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system K10831 - 3.6.3.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006382 376.0
MMD3_k127_260545_3 amine dehydrogenase activity - - - 0.00000004781 54.0
MMD3_k127_2634551_0 phenylacetic acid degradation protein paaN - - - 5.19e-257 801.0
MMD3_k127_2634551_1 Phosphate acetyl butaryl transferase K00029 - 1.1.1.40 3.603e-226 712.0
MMD3_k127_2634551_10 Iron-sulfur cluster assembly protein K02612 - - 0.0000000000000000000000000000000000000000000009 182.0
MMD3_k127_2634551_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 3.477e-195 617.0
MMD3_k127_2634551_3 TIGRFAM phenylacetate-CoA oxygenase, PaaG subunit K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005584 554.0
MMD3_k127_2634551_4 Oxidoreductase FAD-binding domain K02613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 457.0
MMD3_k127_2634551_5 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 381.0
MMD3_k127_2634551_6 enoyl-CoA hydratase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005096 357.0
MMD3_k127_2634551_7 phenylacetic acid K02611 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 317.0
MMD3_k127_2634551_8 Lysin motif - - - 0.0000000000000000000000000000000000000000000000000003471 209.0
MMD3_k127_2634551_9 With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA K02610 - - 0.0000000000000000000000000000000000000000000000002724 187.0
MMD3_k127_26522_0 MOFRL family K11529 - 2.7.1.165 2.264e-196 628.0
MMD3_k127_26522_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 597.0
MMD3_k127_26522_2 Peptidase dimerisation domain K02083 - 3.5.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007801 431.0
MMD3_k127_26522_3 Glutathione S-transferase, N-terminal domain K11208 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005232 273.0
MMD3_k127_26522_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. Binds to the 16 bp palindromic sequence 5'-CTGTATATATATACAG-3'. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006282,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031668,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001020,GO:2001141 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000002083 252.0
MMD3_k127_26522_5 PFAM Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000004584 187.0
MMD3_k127_26522_6 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K14160 - - 0.000000000000000000000000000000000002301 148.0
MMD3_k127_26522_8 Universal stress protein - - - 0.000000000000000000000000173 123.0
MMD3_k127_26522_9 Phasin protein - - - 0.0004032 51.0
MMD3_k127_2654544_0 Domain of unknown function (DUF4445) - - - 2.076e-309 962.0
MMD3_k127_2654544_1 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000427 391.0
MMD3_k127_2654544_2 Vitamin B12 dependent methionine synthase activation K00548,K15023 - 2.1.1.13,2.1.1.258 0.00000000000000000000000000000000000001954 145.0
MMD3_k127_266168_0 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007269 512.0
MMD3_k127_266168_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002435 335.0
MMD3_k127_266168_2 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000004426 194.0
MMD3_k127_266168_3 Thioesterase - - - 0.0000000000000000000000000000000000000000000003024 175.0
MMD3_k127_266168_4 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000008526 120.0
MMD3_k127_2673844_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004568 366.0
MMD3_k127_2673844_1 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 296.0
MMD3_k127_2673844_2 LytTr DNA-binding domain K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008843 294.0
MMD3_k127_2673844_3 Universal stress protein family K14055 - - 0.0000000000000000000000000000000000000000006639 170.0
MMD3_k127_2695060_0 PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A K01908 - 6.2.1.17 4.107e-300 932.0
MMD3_k127_2695060_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 3.678e-220 703.0
MMD3_k127_2695060_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 420.0
MMD3_k127_2695060_3 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 408.0
MMD3_k127_2695060_4 PFAM AFG1-family ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 417.0
MMD3_k127_2695060_5 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 383.0
MMD3_k127_2708000_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 568.0
MMD3_k127_2708000_1 Guanine deaminase K01487 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008892,GO:0009112,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0016814,GO:0018756,GO:0019239,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0046098,GO:0046483,GO:0046872,GO:0046914,GO:0055086,GO:0071704,GO:0072521,GO:1901360,GO:1901564 3.5.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003149 389.0
MMD3_k127_2708000_2 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007313 297.0
MMD3_k127_2708000_3 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007284 310.0
MMD3_k127_2708000_4 Belongs to the BolA IbaG family - - - 0.0000000000000000000000003454 106.0
MMD3_k127_2710490_0 FAD binding domain K10676 - 1.14.13.20 1.709e-244 770.0
MMD3_k127_2710490_1 tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000558 396.0
MMD3_k127_2710490_2 PFAM Sulfate transporter antisigma-factor antagonist STAS K03321 - - 0.000000000000000000000000000002722 120.0
MMD3_k127_2751414_0 Aldo/keto reductase family K15303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003922 364.0
MMD3_k127_2751414_1 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 359.0
MMD3_k127_2752647_0 DNA topoisomerase III K03169 - 5.99.1.2 0.0 1119.0
MMD3_k127_2752647_1 Aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006401 606.0
MMD3_k127_2752647_2 Protein of unknown function (DUF2905) - - - 0.000000000000000000000004061 102.0
MMD3_k127_2752647_3 amine dehydrogenase activity - - - 0.0000000005999 71.0
MMD3_k127_2752647_4 TIGRFAM DNA protecting protein DprA K04096 - - 0.0000001088 56.0
MMD3_k127_2753021_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 355.0
MMD3_k127_2753021_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008136 355.0
MMD3_k127_2753021_2 Bacterial protein of unknown function (DUF924) - - - 0.0000000000000000000000000000000000000000000000000000000004731 211.0
MMD3_k127_2753021_3 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000002908 183.0
MMD3_k127_2753021_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000008211 192.0
MMD3_k127_2753021_5 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000003666 152.0
MMD3_k127_2753021_6 cation diffusion facilitator family transporter K14696 - - 0.00000000000000000000000000000000000005942 155.0
MMD3_k127_2753021_7 Maf-like protein K06287 - - 0.000003179 53.0
MMD3_k127_2759347_0 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 385.0
MMD3_k127_2759347_1 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 367.0
MMD3_k127_2759347_2 phosphohistidine phosphatase K08296 - - 0.0000000000000000000000000000000000003711 143.0
MMD3_k127_2772230_0 glycosyl hydrolases - - - 1.113e-232 741.0
MMD3_k127_2772230_1 peptidase M20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 614.0
MMD3_k127_2772230_2 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 346.0
MMD3_k127_2772230_3 6-phosphogluconolactonase K00851,K01057 - 2.7.1.12,3.1.1.31 0.0000000000000000000000000000000000000000005888 160.0
MMD3_k127_2796846_0 Indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 0.0 1107.0
MMD3_k127_2796846_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.725e-217 682.0
MMD3_k127_2796846_10 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 0.0000000000000000003999 89.0
MMD3_k127_2796846_2 PFAM Rieske 2Fe-2S domain protein K03862,K18068 - 1.14.12.7,1.14.13.82 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 604.0
MMD3_k127_2796846_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 526.0
MMD3_k127_2796846_4 Oxidoreductase K03863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 394.0
MMD3_k127_2796846_5 PFAM metallophosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 340.0
MMD3_k127_2796846_6 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003363 288.0
MMD3_k127_2796846_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000005026 223.0
MMD3_k127_2796846_8 -Thioesterase K01075 - 3.1.2.23 0.0000000000000000000000000000000000000000000001262 177.0
MMD3_k127_2796846_9 transcriptional Regulator, LysR family - - - 0.00000000000000000000003241 102.0
MMD3_k127_2812750_0 ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 0.0 1107.0
MMD3_k127_2812750_1 Poly-beta-hydroxybutyrate polymerase N terminal K03821 - - 8.557e-267 833.0
MMD3_k127_2812750_10 Anaerobic ribonucleoside-triphosphate reductase - - - 0.000000000000000001073 90.0
MMD3_k127_2812750_2 4-hydroxybenzoate 3-monooxygenase K00481 - 1.14.13.2 2.712e-196 627.0
MMD3_k127_2812750_3 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 344.0
MMD3_k127_2812750_4 belongs to the bacterial solute-binding protein 3 family K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 332.0
MMD3_k127_2812750_5 PFAM binding-protein-dependent transport systems inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 331.0
MMD3_k127_2812750_6 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 322.0
MMD3_k127_2812750_7 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001715 286.0
MMD3_k127_2812750_8 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006039 270.0
MMD3_k127_2812750_9 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000001535 167.0
MMD3_k127_2825132_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000012 252.0
MMD3_k127_2825132_1 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000001019 236.0
MMD3_k127_2825132_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000004435 216.0
MMD3_k127_2825132_3 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000000000001259 141.0
MMD3_k127_2825132_4 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000000000000000000001317 122.0
MMD3_k127_2840473_0 PFAM binding-protein-dependent transport systems inner membrane component K05814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 434.0
MMD3_k127_2840473_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 449.0
MMD3_k127_2840473_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000001563 257.0
MMD3_k127_2840473_3 PFAM extracellular solute-binding protein family 1 K05813 - - 0.000000002524 57.0
MMD3_k127_2846638_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1163.0
MMD3_k127_2846638_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 311.0
MMD3_k127_2846638_2 secretion protein HlyD K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001685 299.0
MMD3_k127_2846638_3 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000001794 158.0
MMD3_k127_2850091_0 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007606 347.0
MMD3_k127_2850091_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 308.0
MMD3_k127_2850091_2 dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009854 274.0
MMD3_k127_2850091_3 PFAM DoxX family protein K15977 - - 0.0000000000000000000000000000000001651 144.0
MMD3_k127_2850091_4 - - - - 0.000000000000000000000000000000002149 135.0
MMD3_k127_2850091_5 GCN5-related N-acetyl-transferase K06975 - - 0.0000000000000000000002852 106.0
MMD3_k127_2850091_6 Glycine zipper 2TM domain - - - 0.0000000000000000002294 102.0
MMD3_k127_2851203_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 2.227e-213 675.0
MMD3_k127_2851203_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 9.172e-201 632.0
MMD3_k127_2851203_2 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000000000000000000000000000000000000009766 231.0
MMD3_k127_2851203_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.00000000000000000000000000000000000000000002838 163.0
MMD3_k127_2851203_4 Tetratricopeptide repeat - - - 0.00002661 57.0
MMD3_k127_2857_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 570.0
MMD3_k127_2857_1 Binding-protein-dependent transport system inner membrane component K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001554 274.0
MMD3_k127_2857_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000001093 146.0
MMD3_k127_2885361_0 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000241 225.0
MMD3_k127_2885361_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000006258 210.0
MMD3_k127_2885361_2 XdhC and CoxI family - - - 0.0000000000000000000000000000000000001374 145.0
MMD3_k127_2885361_3 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.00000000000000000000000000000004414 131.0
MMD3_k127_2885361_4 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000007615 115.0
MMD3_k127_2885361_5 Thioesterase superfamily K19222 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0061522,GO:0071704,GO:1901576,GO:1901661,GO:1901663 3.1.2.28 0.0000000000000000000000002178 117.0
MMD3_k127_2886395_0 PFAM aminotransferase, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 486.0
MMD3_k127_2886395_1 glucuronate isomerase K01812 - 5.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000001181 235.0
MMD3_k127_2886395_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000000001974 198.0
MMD3_k127_2889372_0 PFAM Uncharacterised protein family UPF0027 K14415 - 6.5.1.3 3.796e-223 702.0
MMD3_k127_2889372_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006497 571.0
MMD3_k127_2889372_2 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000117 239.0
MMD3_k127_2889372_3 PFAM Archease protein family (DUF101 UPF0211) K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000003086 194.0
MMD3_k127_2899015_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 559.0
MMD3_k127_2899015_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 566.0
MMD3_k127_2899015_10 Bacterial protein of unknown function (DUF883) - - - 0.00000000000000000005493 93.0
MMD3_k127_2899015_11 membrane - - - 0.00000000004645 68.0
MMD3_k127_2899015_2 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 402.0
MMD3_k127_2899015_3 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 385.0
MMD3_k127_2899015_4 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009998 392.0
MMD3_k127_2899015_5 Enoyl-(Acyl carrier protein) reductase K00019,K18335 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 325.0
MMD3_k127_2899015_6 Prolyl oligopeptidase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000001389 242.0
MMD3_k127_2899015_7 Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000000000000000000496 178.0
MMD3_k127_2899015_8 FMN-dependent dehydrogenase - - - 0.000000000000000000000000000000000000000005133 157.0
MMD3_k127_2899015_9 membrane - - - 0.000000000000000000000001781 109.0
MMD3_k127_2909352_0 Rod shape-determining protein MreB K03569 - - 2.981e-196 616.0
MMD3_k127_2909352_1 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001197 267.0
MMD3_k127_2909352_2 shape-determining protein MreD K03571 - - 0.000000000000000000000000000006198 126.0
MMD3_k127_2909352_3 Glu-tRNAGln amidotransferase C subunit - - - 0.00000000000004272 76.0
MMD3_k127_2915193_0 PFAM peptidase S10 serine carboxypeptidase - - - 5.789e-215 681.0
MMD3_k127_2915193_1 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 604.0
MMD3_k127_2915193_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 414.0
MMD3_k127_2915193_3 Histidine kinase K20976 - - 0.00000000000000000000007207 102.0
MMD3_k127_2917241_0 Vitamin B12 dependent methionine synthase activation region K00548 - 2.1.1.13 1.141e-238 752.0
MMD3_k127_2917241_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000008538 200.0
MMD3_k127_2917241_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000001556 141.0
MMD3_k127_2917241_3 SpoIIAA-like - - - 0.0000000000000000000000002787 116.0
MMD3_k127_294686_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 588.0
MMD3_k127_294686_1 PFAM 6-phosphogluconate dehydrogenase NAD-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009141 355.0
MMD3_k127_294686_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006225 331.0
MMD3_k127_294686_3 inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000008388 265.0
MMD3_k127_294686_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000428 230.0
MMD3_k127_294686_5 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000004729 150.0
MMD3_k127_294686_6 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.0000000000000000000000000000000226 130.0
MMD3_k127_2951201_0 Carbohydrate-selective porin, OprB family K07267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 511.0
MMD3_k127_2951201_1 PFAM Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 372.0
MMD3_k127_2951201_2 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 334.0
MMD3_k127_2951201_3 Class II Aldolase and Adducin N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 289.0
MMD3_k127_2951201_4 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.00000000000000000000000000000000000000000000000000000000000000007333 232.0
MMD3_k127_2951201_5 Protein of unknown function (DUF3667) - - - 0.0000000000000000000006825 100.0
MMD3_k127_295373_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1217.0
MMD3_k127_295373_1 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004154 544.0
MMD3_k127_295373_2 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 344.0
MMD3_k127_2976493_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.899e-216 682.0
MMD3_k127_2976493_1 aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 548.0
MMD3_k127_2976493_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 434.0
MMD3_k127_2976493_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 301.0
MMD3_k127_2976493_4 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.00000000000000000000000000000001158 132.0
MMD3_k127_2976493_5 Bacterial regulatory protein, Fis family K03557 - - 0.00000000000000005208 94.0
MMD3_k127_3012736_0 Mo-co oxidoreductase dimerisation domain K17225 - - 2.783e-219 691.0
MMD3_k127_3012736_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 589.0
MMD3_k127_3012736_2 Cytochrome C oxidase, cbb3-type, subunit III K08738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004798 259.0
MMD3_k127_3038819_0 SMART Nucleotide binding protein, PINc K07175 - - 9.998e-212 666.0
MMD3_k127_3038819_1 Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state - GO:0003674,GO:0003756,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005575,GO:0005623,GO:0006457,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0022607,GO:0030163,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043163,GO:0043165,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044464,GO:0045229,GO:0046872,GO:0051603,GO:0061024,GO:0061077,GO:0070011,GO:0071704,GO:0071709,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002223 299.0
MMD3_k127_3038819_2 MlaA lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000004004 205.0
MMD3_k127_3038819_3 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.0000000000000000000000000008584 113.0
MMD3_k127_3045988_0 Glycyl-tRNA synthetase, alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 527.0
MMD3_k127_3045988_1 Psort location Cytoplasmic, score 9.97 K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 439.0
MMD3_k127_3045988_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 408.0
MMD3_k127_3045988_3 PFAM CBS domain K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 376.0
MMD3_k127_3045988_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000000000002662 176.0
MMD3_k127_3045988_5 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000001109 67.0
MMD3_k127_3060490_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.348e-233 731.0
MMD3_k127_3060490_1 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 403.0
MMD3_k127_3060490_2 COG1404 Subtilisin-like serine proteases K14645 GO:0005575,GO:0005576 - 0.00000000000000000000000000000001496 136.0
MMD3_k127_3065971_0 Transport of potassium into the cell K03549 - - 3.29e-241 782.0
MMD3_k127_3065971_1 Signal transduction histidine kinase - - - 6.549e-196 635.0
MMD3_k127_3065971_2 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 408.0
MMD3_k127_3065971_3 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006647 383.0
MMD3_k127_3065971_4 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 361.0
MMD3_k127_3065971_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 323.0
MMD3_k127_3065971_6 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000005044 144.0
MMD3_k127_3065971_7 Domain of unknown function (DUF4390) - - - 0.000000000000000000000000000000005315 146.0
MMD3_k127_3082402_0 D-galactarate dehydratase K16846,K16850 - 4.2.1.7,4.4.1.24 3.215e-218 687.0
MMD3_k127_3082402_1 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 441.0
MMD3_k127_3082402_10 Belongs to the skp family K06142 - - 0.00000002786 55.0
MMD3_k127_3082402_2 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004512 373.0
MMD3_k127_3082402_3 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 363.0
MMD3_k127_3082402_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 362.0
MMD3_k127_3082402_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009902 325.0
MMD3_k127_3082402_6 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000002903 237.0
MMD3_k127_3082402_7 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000007441 173.0
MMD3_k127_3082402_8 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K02049 - - 0.0000000000000000000000000000002196 130.0
MMD3_k127_3082402_9 SAF K01685,K01708 - 4.2.1.42,4.2.1.7 0.000000000001216 76.0
MMD3_k127_3124326_0 ABC transporter K10441 - 3.6.3.17 1.996e-195 621.0
MMD3_k127_3124326_1 Na H antiporter NhaD-like permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 426.0
MMD3_k127_3124326_2 Belongs to the binding-protein-dependent transport system permease family K10440,K10553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000417 332.0
MMD3_k127_3124326_3 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 296.0
MMD3_k127_3124326_4 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000001119 123.0
MMD3_k127_3124326_5 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000006484 107.0
MMD3_k127_3125216_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007548 381.0
MMD3_k127_3125216_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006583 312.0
MMD3_k127_3125216_2 Required for insertion of 4Fe-4S clusters K15724 - - 0.000000000000000000000000000000000000000000000000000000000001011 212.0
MMD3_k127_3125216_3 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000004077 152.0
MMD3_k127_3125216_4 - - - - 0.000946 44.0
MMD3_k127_3129484_0 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 370.0
MMD3_k127_3129484_1 ABC transporter K02003,K05685 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 336.0
MMD3_k127_3129484_2 Protein of unknown function (DUF3443) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 335.0
MMD3_k127_3129484_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 302.0
MMD3_k127_3129484_4 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000001744 201.0
MMD3_k127_3129484_5 Sh3 type 3 domain protein - - - 0.000000000000000000000000000000000000000004525 163.0
MMD3_k127_3129484_6 Protein of unknown function (DUF2844) - - - 0.000000000000000000000000292 109.0
MMD3_k127_3129484_7 Heavy-metal resistance - - - 0.00000004783 61.0
MMD3_k127_3139224_0 Transport of potassium into the cell K03549 - - 8.159e-253 794.0
MMD3_k127_3139224_1 ABC transporter C-terminal domain K15738 - - 8.889e-213 683.0
MMD3_k127_3139224_2 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 575.0
MMD3_k127_3139224_3 Belongs to the MEMO1 family K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 308.0
MMD3_k127_3139224_4 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008397 297.0
MMD3_k127_3139224_5 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000001513 212.0
MMD3_k127_3139224_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000009194 176.0
MMD3_k127_3146459_0 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004352 579.0
MMD3_k127_3146459_1 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 304.0
MMD3_k127_3146459_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000007392 127.0
MMD3_k127_3146459_3 Exonuclease VII small subunit - - - 0.0000000000000000003967 91.0
MMD3_k127_3146514_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 1.017e-201 651.0
MMD3_k127_3146514_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008394 524.0
MMD3_k127_3146514_2 Membrane-bound lytic murein transglycosylase K08304 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 428.0
MMD3_k127_3146514_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 360.0
MMD3_k127_3146514_4 Peptidase C26 K01658 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 291.0
MMD3_k127_3146514_5 ApaG domain - - - 0.00000000000000000000000000000000000000000000001767 186.0
MMD3_k127_3146514_6 Protein of unknown function (DUF3301) - - - 0.00000000000000000001765 107.0
MMD3_k127_3146514_7 Belongs to the TrpC family K01609 - 4.1.1.48 0.0002447 49.0
MMD3_k127_3153941_0 Mo-molybdopterin cofactor biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 347.0
MMD3_k127_3153941_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 308.0
MMD3_k127_3153941_2 PFAM Response regulator receiver domain K02483,K07666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001403 294.0
MMD3_k127_3153941_3 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000000000000000000000009553 216.0
MMD3_k127_3153941_4 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000001101 195.0
MMD3_k127_3153941_5 PFAM Di-haem cytochrome c - - - 0.000000000000000000000000000000000000000001731 161.0
MMD3_k127_3153941_6 PFAM ATP-binding region ATPase domain protein K07645 - 2.7.13.3 0.000000000000000000000000000000000000004183 151.0
MMD3_k127_3157178_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 462.0
MMD3_k127_3157178_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00019 - 1.1.1.30 0.000000000000000000000000000000000000000000000000000000000004118 214.0
MMD3_k127_3163394_0 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 396.0
MMD3_k127_3163394_1 Beta-eliminating lyase K01668 - 4.1.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 335.0
MMD3_k127_3163394_2 catalyzes the formation of indole and pyruvate from tryptophan K01667 - 4.1.99.1 0.000000000000000000000000001823 112.0
MMD3_k127_3200154_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 3.813e-209 658.0
MMD3_k127_3200154_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 - 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002811 445.0
MMD3_k127_3200154_2 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000625 265.0
MMD3_k127_3200154_3 Mammalian cell entry related domain protein K02067,K06192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003849 267.0
MMD3_k127_3200154_4 Polyhydroxyalkanoate synthesis repressor PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000001414 226.0
MMD3_k127_3200154_5 Belongs to the thiolase family K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.0000000000000000000000000000000000000000000000000193 179.0
MMD3_k127_3200154_6 Phasin protein - - - 0.0000000000000000000000000000000044 138.0
MMD3_k127_3200154_7 ABC-type transport auxiliary lipoprotein component K18480 - - 0.00000000000000000001365 107.0
MMD3_k127_3203956_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 1.446e-195 616.0
MMD3_k127_3203956_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 316.0
MMD3_k127_3203956_2 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009751 271.0
MMD3_k127_3203956_3 Sua5 YciO YrdC YwlC family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008409 258.0
MMD3_k127_3203956_4 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003673 251.0
MMD3_k127_3203956_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000001794 231.0
MMD3_k127_3223478_0 Tricorn protease homolog K08676 - - 3.692e-197 631.0
MMD3_k127_3223478_1 serine protease K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 457.0
MMD3_k127_3223478_2 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004197 362.0
MMD3_k127_3223478_3 PFAM Xanthine uracil vitamin C permease K02824 - - 0.0000000000000000000000000000000000000000000000000000000000000000003081 231.0
MMD3_k127_3223478_4 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.000000000000000000000000000000002146 132.0
MMD3_k127_3225055_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 3.381e-198 647.0
MMD3_k127_3225055_1 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 336.0
MMD3_k127_3225055_2 2Fe-2S -binding domain protein K18029 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016725,GO:0019439,GO:0044237,GO:0044248,GO:0055114 1.17.2.1 0.0000000000000000000000000000000000000000000000000000001279 207.0
MMD3_k127_3225055_3 Prokaryotic cytochrome b561 K12262 - - 0.00000000000000000000000000000000000000000001742 171.0
MMD3_k127_32481_0 calcium:proton antiporter activity K07300 GO:0003674,GO:0005215,GO:0005451,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015081,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015385,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035725,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0099516,GO:1902600 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 402.0
MMD3_k127_32481_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004819 252.0
MMD3_k127_32481_2 PFAM HNH endonuclease K07451 - - 0.00000000000000000000412 103.0
MMD3_k127_32481_3 - - - - 0.0000000000005766 71.0
MMD3_k127_3253029_0 Pfam Methyltransferase small - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 396.0
MMD3_k127_3253029_1 YaeQ family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000108 243.0
MMD3_k127_3255430_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 587.0
MMD3_k127_3255430_1 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002033 501.0
MMD3_k127_3255430_10 Iron-sulphur cluster biosynthesis K13628 - - 0.00000000000000000000000003375 118.0
MMD3_k127_3255430_11 Endoribonuclease L-PSP - - - 0.0000000000000000000003795 101.0
MMD3_k127_3255430_12 PFAM Polysulphide reductase, NrfD K00185 - - 0.000158 44.0
MMD3_k127_3255430_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009477 359.0
MMD3_k127_3255430_3 Periplasmic binding proteins and sugar binding domain of LacI family K10439,K17202,K17205,K17213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005226 350.0
MMD3_k127_3255430_4 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 310.0
MMD3_k127_3255430_5 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000000000000006905 233.0
MMD3_k127_3255430_6 Thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000009398 193.0
MMD3_k127_3255430_7 TIGRFAM sulfur relay protein, TusE DsrC DsvC family K11179 - - 0.000000000000000000000000000000000000000000001665 167.0
MMD3_k127_3255430_8 Glutaredoxin - - - 0.00000000000000000000000000000000000000000003637 166.0
MMD3_k127_3255430_9 - - - - 0.00000000000000000000000000000000000000007281 160.0
MMD3_k127_3264914_0 Radical SAM - - - 6.19e-214 679.0
MMD3_k127_3264914_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 478.0
MMD3_k127_3264914_2 glycosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000277 229.0
MMD3_k127_3267470_0 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 9.988e-282 896.0
MMD3_k127_3267470_1 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005298 413.0
MMD3_k127_3267470_2 Beta/gamma crystallins - - - 0.0000000000000000000000000000000000000008693 162.0
MMD3_k127_3267470_3 - - - - 0.000000000000000000000000000000005078 141.0
MMD3_k127_3277087_0 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 372.0
MMD3_k127_3277087_1 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004586 309.0
MMD3_k127_3277087_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000009911 160.0
MMD3_k127_3277662_0 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 347.0
MMD3_k127_3277662_1 Histidine kinase K20975 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007345 356.0
MMD3_k127_3277662_2 helix_turn_helix, Lux Regulon - - - 0.0000000005694 61.0
MMD3_k127_3277662_3 - - - - 0.0003259 51.0
MMD3_k127_331018_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 5.198e-216 684.0
MMD3_k127_331018_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 550.0
MMD3_k127_331018_2 PFAM aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001956 289.0
MMD3_k127_331018_3 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000616 199.0
MMD3_k127_331018_4 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000007888 75.0
MMD3_k127_331057_0 4Fe-4S dicluster domain - - - 0.0 1356.0
MMD3_k127_331057_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008889 310.0
MMD3_k127_331057_2 COG0500 SAM-dependent methyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003073 286.0
MMD3_k127_3313329_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 5.817e-197 644.0
MMD3_k127_3313329_1 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006536 385.0
MMD3_k127_3313329_2 Transcriptional regulator, LysR K13634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 370.0
MMD3_k127_3313329_3 drug resistance transporter K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 332.0
MMD3_k127_3313329_4 Uncharacterized ACR, COG1430 - - - 0.000000000000000000000000000000771 140.0
MMD3_k127_3313329_5 transcriptional K15852 - - 0.0000000000000000002115 98.0
MMD3_k127_3332129_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 3.287e-201 643.0
MMD3_k127_3332129_1 Tricorn protease homolog K08676 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 318.0
MMD3_k127_3332953_0 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 2.374e-277 857.0
MMD3_k127_3332953_1 PFAM AAA ATPase central domain protein K06413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005354 451.0
MMD3_k127_3332953_2 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 356.0
MMD3_k127_3332953_3 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 338.0
MMD3_k127_3332953_4 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003471 324.0
MMD3_k127_3332953_5 Binding-protein-dependent transport systems inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 313.0
MMD3_k127_3332953_6 PFAM ABC transporter related K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007252 295.0
MMD3_k127_3332953_7 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000007002 242.0
MMD3_k127_3332953_8 PFAM Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.0000000000000000000000000000000000000000000000000000000000000198 220.0
MMD3_k127_3332953_9 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000009111 160.0
MMD3_k127_337666_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 526.0
MMD3_k127_337666_1 Extracellular liganD-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 518.0
MMD3_k127_337666_2 aldo keto reductase K05882 - 1.1.1.91 0.00000000000000000000000199 105.0
MMD3_k127_337666_3 Patatin phospholipase K07001 - - 0.0000000904 54.0
MMD3_k127_3393403_0 thymidine phosphorylase K00758 - 2.4.2.4 3.641e-196 625.0
MMD3_k127_3393403_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K00446 - 1.13.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005699 364.0
MMD3_k127_3393403_2 Belongs to the ribose-phosphate pyrophosphokinase family K00948 - 2.7.6.1 0.00000002276 67.0
MMD3_k127_3397155_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 3.496e-201 635.0
MMD3_k127_3397155_1 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 564.0
MMD3_k127_3397155_2 C4-dicarboxylate ABC transporter substrate-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008046 256.0
MMD3_k127_3397155_3 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004214 247.0
MMD3_k127_3398156_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000582 498.0
MMD3_k127_3398156_1 Protein of unknown function (DUF1624) - - - 0.0000000000000000000000000000000000000000000000003163 183.0
MMD3_k127_3398156_2 Dehydrogenase K15515 - 1.2.1.81 0.0000000000000000000000000000000000000000004926 158.0
MMD3_k127_341061_0 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009725 341.0
MMD3_k127_341061_1 (Lipo)protein K07287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 329.0
MMD3_k127_341061_2 cobalamin biosynthetic process K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 324.0
MMD3_k127_341061_3 A domain family that is part of the cupin metalloenzyme superfamily. K18850 - 1.14.11.47 0.000000000000000000000000000000000000000000000000000000001026 207.0
MMD3_k127_341061_4 - - - - 0.0000000000000000000003688 104.0
MMD3_k127_341061_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000002201 94.0
MMD3_k127_3418721_0 PFAM aldehyde oxidase and xanthine dehydrogenase molybdopterin binding K00256 - 1.3.99.16 6.772e-285 900.0
MMD3_k127_3418721_1 sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007403 531.0
MMD3_k127_3418721_2 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003523 319.0
MMD3_k127_3418721_3 2Fe-2S -binding domain protein K18029 - 1.17.2.1 0.00000000000000000000000000000000000000000000000002644 188.0
MMD3_k127_3418721_4 PQQ-like domain K05889 - 1.1.2.6 0.00000000001285 76.0
MMD3_k127_3418721_5 Tetratricopeptide repeat - - - 0.0001179 51.0
MMD3_k127_3422418_0 Methyl-accepting chemotaxis protein K02660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 598.0
MMD3_k127_3422418_1 Histidine kinase K02487,K06596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 496.0
MMD3_k127_3422418_2 Chemotaxis signal transduction protein K02659 - - 0.0000000000000000000000000000000000003374 146.0
MMD3_k127_343738_0 Acyl-CoA dehydrogenase, middle domain K00252 - 1.3.8.6 1.477e-200 633.0
MMD3_k127_343738_1 Maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 285.0
MMD3_k127_343738_2 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001343 277.0
MMD3_k127_343738_3 PFAM regulatory protein, MarR - - - 0.000000000000000000000000000000000000000000000002402 180.0
MMD3_k127_343738_4 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.000000000000000000000000000000000003925 142.0
MMD3_k127_343738_5 Type II transport protein GspH K08084 - - 0.0000000000000000000000000000006795 128.0
MMD3_k127_343738_6 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.00000000000000000004368 102.0
MMD3_k127_34462_0 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 5.838e-244 761.0
MMD3_k127_34462_1 COG2185 Methylmalonyl-CoA mutase, C-terminal domain subunit (cobalamin-binding) K01849,K20907 - 5.4.99.2,5.4.99.64 0.00000000000000000000000000000000000000000000000000000000001116 209.0
MMD3_k127_34462_2 TIGRFAM LAO AO transport system ATPase K07588 - - 0.000000000000000000000000000000000000003109 149.0
MMD3_k127_34462_3 - - - - 0.000000000000000000000000000007246 130.0
MMD3_k127_34462_4 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000002151 94.0
MMD3_k127_3476567_0 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 287.0
MMD3_k127_3476567_1 HAD-hyrolase-like K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000004836 212.0
MMD3_k127_3476567_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000005498 162.0
MMD3_k127_3476567_3 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000001106 121.0
MMD3_k127_3476567_4 - - - - 0.00001965 55.0
MMD3_k127_349682_0 stress-induced mitochondrial fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000005058 241.0
MMD3_k127_349682_1 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000002152 149.0
MMD3_k127_349682_2 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000005092 139.0
MMD3_k127_349682_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000003357 123.0
MMD3_k127_3497784_0 Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain K00101,K00104 - 1.1.2.3,1.1.3.15 7.335e-211 659.0
MMD3_k127_3497784_1 cytochrome C peroxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 550.0
MMD3_k127_3497784_2 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 362.0
MMD3_k127_3497784_3 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000000942 162.0
MMD3_k127_3497784_4 Protein kinase domain K12132 - 2.7.11.1 0.000000000007652 78.0
MMD3_k127_3502035_0 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008519 391.0
MMD3_k127_3502035_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000008357 153.0
MMD3_k127_3535656_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 489.0
MMD3_k127_3535656_1 Aminotransferase K14267 - 2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 474.0
MMD3_k127_3535656_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 327.0
MMD3_k127_3535656_3 Phosphoglycolate phosphatase K22292 - 3.1.3.105 0.00000000000000000000000000000000000000000000000000000000000000000000001506 249.0
MMD3_k127_3535656_4 Type II secretion system protein C K02452 - - 0.00001257 56.0
MMD3_k127_3548850_0 Ammonium Transporter Family K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 586.0
MMD3_k127_3548850_1 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 318.0
MMD3_k127_3548850_2 Protein of unknown function, DUF484 K09921 - - 0.0000000000000000000000000000000003027 136.0
MMD3_k127_3551761_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1699.0
MMD3_k127_3551761_1 peptidase dimerisation domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 620.0
MMD3_k127_3551761_2 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 500.0
MMD3_k127_3551761_3 Two component transcriptional regulator, winged helix family K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 325.0
MMD3_k127_3551761_4 histidine kinase HAMP region domain protein K07641 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 312.0
MMD3_k127_3551761_5 Histidine kinase - - - 0.00000002164 66.0
MMD3_k127_3558497_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 4.356e-279 875.0
MMD3_k127_3558497_1 Proton-conducting membrane transporter - - - 7.622e-273 858.0
MMD3_k127_3558497_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006316 552.0
MMD3_k127_3558497_3 chloride channel K03281 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 552.0
MMD3_k127_3558497_4 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 443.0
MMD3_k127_3558497_5 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 356.0
MMD3_k127_3558497_6 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 313.0
MMD3_k127_3558497_7 NADH Ubiquinone plastoquinone (Complex I) K12141 - - 0.000000000000000000000000000000000000000000000000000000002992 203.0
MMD3_k127_3558855_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 593.0
MMD3_k127_3558855_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 312.0
MMD3_k127_3558855_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000000000003606 213.0
MMD3_k127_3558855_3 PFAM Cytochrome C assembly protein - - - 0.000000000000000000000000000000000000000000000000000000009016 207.0
MMD3_k127_3558855_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000001395 158.0
MMD3_k127_3558855_5 Transporter associated domain - - - 0.0000000000000000000000000000000000001961 143.0
MMD3_k127_3558855_6 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000000001251 132.0
MMD3_k127_356706_0 DHH family K07462 - - 8.057e-197 628.0
MMD3_k127_3594566_0 peptidase dimerisation domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 530.0
MMD3_k127_3594566_1 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 421.0
MMD3_k127_3594566_2 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 372.0
MMD3_k127_3594566_3 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000002087 233.0
MMD3_k127_3607977_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0 1244.0
MMD3_k127_3607977_1 AAA domain (dynein-related subfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 400.0
MMD3_k127_3607977_2 Dehydrogenase K03519 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 314.0
MMD3_k127_3607977_3 carbon monoxide dehydrogenase K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002766 252.0
MMD3_k127_3642151_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 587.0
MMD3_k127_3642151_1 Major facilitator superfamily K03449 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 326.0
MMD3_k127_3682421_0 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 1.22e-235 742.0
MMD3_k127_3682421_1 Iron-containing alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003278 505.0
MMD3_k127_3682421_2 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003539 343.0
MMD3_k127_3682421_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000008977 88.0
MMD3_k127_3682421_4 - - - - 0.000000007143 62.0
MMD3_k127_3685385_0 Sigma-54 interaction domain K07715 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009901 555.0
MMD3_k127_3685385_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 462.0
MMD3_k127_3685385_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 346.0
MMD3_k127_3707446_0 AMP-binding enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009004 385.0
MMD3_k127_3707446_1 Universal stress protein family - - - 0.00000000000000000000000000002623 126.0
MMD3_k127_3722690_0 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 412.0
MMD3_k127_3722690_1 PFAM Glycosyltransferase family 9 (heptosyltransferase) - - - 0.00000000000000000000000000000000000000000000000000000000001123 221.0
MMD3_k127_3722690_2 YaeQ - - - 0.00000000000000000000000000000000000000000000000000003246 195.0
MMD3_k127_3722690_3 D,D-heptose 1,7-bisphosphate phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000006924 148.0
MMD3_k127_3723626_0 Platelet-activating factor acetylhydrolase, isoform II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004504 361.0
MMD3_k127_3723626_1 helix_turn_helix isocitrate lyase regulation K02624,K20539 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002683 256.0
MMD3_k127_3723626_2 Flavin containing amine oxidoreductase - - - 0.00000000011 68.0
MMD3_k127_3723626_3 TonB dependent receptor - - - 0.00000000049 66.0
MMD3_k127_3737486_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 479.0
MMD3_k127_3737486_1 uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000001744 267.0
MMD3_k127_3737486_2 Alpha beta hydrolase K00433 - 1.11.1.10 0.000000000000000000000000000000000000000000000000346 186.0
MMD3_k127_37595_0 FtsX-like permease family K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 368.0
MMD3_k127_37595_1 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 333.0
MMD3_k127_37595_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 321.0
MMD3_k127_37595_3 Sh3 type 3 domain protein - - - 0.000000000000000000000000000000000000000002787 163.0
MMD3_k127_37657_0 Dehydratase family K13875 - 4.2.1.25 5.04e-322 995.0
MMD3_k127_37657_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003917 509.0
MMD3_k127_37657_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000001514 261.0
MMD3_k127_37657_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001591 254.0
MMD3_k127_37657_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000002391 233.0
MMD3_k127_37657_5 CRS1_YhbY K07574 - - 0.000000000000000000000000001783 117.0
MMD3_k127_379349_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1223.0
MMD3_k127_379349_1 SurA N-terminal domain K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 485.0
MMD3_k127_379349_2 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000001725 144.0
MMD3_k127_379349_4 - - - - 0.00007901 46.0
MMD3_k127_3811501_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 537.0
MMD3_k127_3811501_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 402.0
MMD3_k127_3811501_2 Transcriptional regulator, LysR family K04761 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 359.0
MMD3_k127_3811501_3 haloacid dehalogenase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000001389 205.0
MMD3_k127_3811501_4 20S proteasome, A and B subunits K07395 - - 0.000000003156 57.0
MMD3_k127_3812521_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 1.322e-220 694.0
MMD3_k127_3812521_1 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009304 569.0
MMD3_k127_3812521_2 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000001008 259.0
MMD3_k127_3812521_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000007786 244.0
MMD3_k127_3812521_4 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000008158 238.0
MMD3_k127_383181_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 596.0
MMD3_k127_383181_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 448.0
MMD3_k127_383181_2 Acyl-CoA synthetase (NDP forming) K09181 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 330.0
MMD3_k127_383181_3 CoA binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003483 290.0
MMD3_k127_383181_4 Family of unknown function (DUF1028) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001284 282.0
MMD3_k127_383181_5 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007357 256.0
MMD3_k127_383181_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000001048 247.0
MMD3_k127_383181_7 dehydratase - - - 0.0000000000000000000000000000000000000000000000000001242 201.0
MMD3_k127_3844114_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.237e-206 651.0
MMD3_k127_3844114_1 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 529.0
MMD3_k127_3844114_2 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113 1.2.1.12 0.00000000000000001987 81.0
MMD3_k127_3844114_3 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.00000000000000007637 82.0
MMD3_k127_386235_0 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 559.0
MMD3_k127_386235_1 COG2513 PEP phosphonomutase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006457 395.0
MMD3_k127_386235_2 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003528 401.0
MMD3_k127_386235_3 Phospholipase/Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000001252 230.0
MMD3_k127_386235_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000002004 150.0
MMD3_k127_3871854_0 protein synthesis factor, GTP-binding K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007673 529.0
MMD3_k127_3871854_1 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003264 525.0
MMD3_k127_3883469_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 3.232e-199 630.0
MMD3_k127_3883469_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 471.0
MMD3_k127_3883469_2 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 432.0
MMD3_k127_3883469_3 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000169 277.0
MMD3_k127_3883469_4 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000107 254.0
MMD3_k127_3883469_5 Psort location CytoplasmicMembrane, score 10.00 K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006887 252.0
MMD3_k127_3883469_6 - - - - 0.000000000000000000006437 103.0
MMD3_k127_3893091_0 transport system, permease component K05778 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 370.0
MMD3_k127_3893091_1 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 341.0
MMD3_k127_3893091_2 BNR repeat-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 349.0
MMD3_k127_3893091_3 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000000000000001054 224.0
MMD3_k127_3893091_4 - - - - 0.000000000000000001256 101.0
MMD3_k127_3907349_0 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 535.0
MMD3_k127_3907349_1 PFAM LemA family protein K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003638 285.0
MMD3_k127_3907349_2 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000005814 255.0
MMD3_k127_3907349_3 Inhibitor of apoptosis-promoting Bax1 K19416 - - 0.000000000000000000000000000000000000000000000000000000000000000000007791 237.0
MMD3_k127_3907349_4 TPM domain K06872 - - 0.00000000000000000000000000000000000000000000000000000002266 211.0
MMD3_k127_3907349_5 Glycoprotease family K14742 - - 0.000000000000000000000000000000000000000000000000001585 190.0
MMD3_k127_3907349_6 Acetyltransferase (GNAT) domain K03789 - 2.3.1.128 0.0000000000000000000000000000000007439 137.0
MMD3_k127_3921758_0 OPT oligopeptide transporter protein - - - 9.125e-260 812.0
MMD3_k127_3921758_1 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000001144 202.0
MMD3_k127_3921758_2 - - - - 0.00000000000000000000000000000002132 140.0
MMD3_k127_3925432_0 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000216 289.0
MMD3_k127_3925432_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000001149 235.0
MMD3_k127_3925716_0 PFAM phospholipase A1 K01058 - 3.1.1.32,3.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002165 286.0
MMD3_k127_3925716_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000006979 256.0
MMD3_k127_3925716_2 Psort location CytoplasmicMembrane, score 9.46 - - - 0.000000000000000000001063 107.0
MMD3_k127_3936902_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 351.0
MMD3_k127_3936902_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002086 355.0
MMD3_k127_3936902_2 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000001985 194.0
MMD3_k127_3956744_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01577,K01652,K03852 - 2.2.1.6,2.3.3.15,4.1.1.8 1.546e-315 973.0
MMD3_k127_3956744_1 FAD dependent oxidoreductase - - - 8.649e-223 702.0
MMD3_k127_3956744_2 required for the utilization of tricarballylate as a carbon and energy source by S. enterica K13796 - - 1.54e-206 651.0
MMD3_k127_3956744_3 utilization protein B K13795 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 411.0
MMD3_k127_3956744_4 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 344.0
MMD3_k127_3956744_5 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000004381 258.0
MMD3_k127_3956744_6 gamma-aminobutyric acid catabolic process - - - 0.000000000000713 68.0
MMD3_k127_3963969_0 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006212 533.0
MMD3_k127_3963969_1 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 387.0
MMD3_k127_3963969_2 C-C_Bond_Lyase of the TIM-Barrel fold K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 305.0
MMD3_k127_3963969_3 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000012 241.0
MMD3_k127_3963969_4 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000004975 155.0
MMD3_k127_3966043_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0 1262.0
MMD3_k127_3966043_1 Aldehyde dehydrogenase family - - - 2.647e-214 678.0
MMD3_k127_3966043_2 Periplasmic binding protein K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 578.0
MMD3_k127_3966043_3 LysR substrate binding domain K13794,K19338 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 470.0
MMD3_k127_3966043_4 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004413 467.0
MMD3_k127_3966043_5 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 453.0
MMD3_k127_3966043_6 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009176 464.0
MMD3_k127_3966043_7 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000002351 190.0
MMD3_k127_3966043_8 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000002904 179.0
MMD3_k127_3966043_9 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 0.00000001411 56.0
MMD3_k127_3976413_0 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 576.0
MMD3_k127_3976413_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 379.0
MMD3_k127_3976413_2 Appr-1'-p processing enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000004091 234.0
MMD3_k127_3990601_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008816 487.0
MMD3_k127_3990601_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154 407.0
MMD3_k127_3990601_2 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000995 412.0
MMD3_k127_3990601_3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA K07141 - 2.7.7.76 0.00000000000000000000000000000000000000000000005581 184.0
MMD3_k127_3996776_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 5.31e-196 625.0
MMD3_k127_3996776_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007906 477.0
MMD3_k127_3996776_2 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 338.0
MMD3_k127_3996776_3 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 302.0
MMD3_k127_3996776_4 Phosphoribosyl transferase domain K07101 - - 0.000000000000000000000000000000000000000000000000000000000000001305 222.0
MMD3_k127_3996776_5 protein conserved in bacteria K09937 - - 0.000000000000001038 78.0
MMD3_k127_3999342_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006642 466.0
MMD3_k127_3999342_1 alpha/beta hydrolase fold K01432 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000001094 239.0
MMD3_k127_3999342_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000002077 169.0
MMD3_k127_3999342_3 transcriptional regulator - - - 0.0000000000000000000000000000000000005102 149.0
MMD3_k127_3999342_4 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000006098 57.0
MMD3_k127_4002040_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 484.0
MMD3_k127_4002040_1 chorismate mutase K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 426.0
MMD3_k127_4002040_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 418.0
MMD3_k127_4002040_3 Aminotransferase class I and II K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000002251 266.0
MMD3_k127_4005832_0 Methylmalonyl-CoA mutase K01847,K01848,K14447,K20906 - 5.4.99.2,5.4.99.63,5.4.99.64 1.481e-288 893.0
MMD3_k127_4005832_1 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 2.042e-243 760.0
MMD3_k127_4005832_2 COG COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase pyruvate dehydrogenase (cytochrome) glyoxylate carboligase phosphonopyruvate decarboxylase Amino acid transport and metabolism Coenzyme metabolism K01652 - 2.2.1.6 1.013e-200 640.0
MMD3_k127_4005832_3 ArgK protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003785 346.0
MMD3_k127_4005832_4 COG2185 Methylmalonyl-CoA mutase, C-terminal domain subunit (cobalamin-binding) K01849,K20907 - 5.4.99.2,5.4.99.64 0.000000000000000000000000000000000000000000000000000001519 201.0
MMD3_k127_4005832_5 Putative auto-transporter adhesin, head GIN domain - - - 0.000000000000000000000007892 113.0
MMD3_k127_4005832_6 - - - - 0.00008782 48.0
MMD3_k127_4006392_0 histidine kinase, dimerisation and phosphoacceptor region K07673 - 2.7.13.3 1.093e-223 709.0
MMD3_k127_4006392_1 response regulator, receiver K07684 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002232 278.0
MMD3_k127_4006392_2 - - - - 0.00000000000000000116 94.0
MMD3_k127_4006392_3 Glycine-zipper domain - - - 0.000000002836 66.0
MMD3_k127_4008944_0 Belongs to the binding-protein-dependent transport system permease family - - - 1.743e-238 752.0
MMD3_k127_4008944_1 Aldehyde dehydrogenase family K00130 - 1.2.1.8 6.681e-201 650.0
MMD3_k127_4008944_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 335.0
MMD3_k127_4008944_3 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004632 282.0
MMD3_k127_4008944_4 ATP synthase subunit D K02120 - - 0.0001668 44.0
MMD3_k127_4025806_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 475.0
MMD3_k127_4025806_1 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 376.0
MMD3_k127_4025806_2 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006058 324.0
MMD3_k127_4025806_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005301 288.0
MMD3_k127_4025806_4 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 - - 0.0000000000000000000000000000000000000000000000000005754 188.0
MMD3_k127_4025806_5 ribosomal subunit interface protein K05808 - - 0.000000000000000000000000000000000000001729 150.0
MMD3_k127_4025806_6 PFAM peptidase S16 lon domain protein K07157 - - 0.000000000000000000000000000172 128.0
MMD3_k127_4027659_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 603.0
MMD3_k127_4027659_1 UPF0056 inner membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000007701 209.0
MMD3_k127_4027659_2 Cytochrome B561 K12262 - - 0.0000000000000000000000000000000000000000000000000000242 194.0
MMD3_k127_4027659_3 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000000002786 154.0
MMD3_k127_4027659_4 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000841 151.0
MMD3_k127_4052582_0 Protein of unknown function (DUF1631) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 377.0
MMD3_k127_4058347_0 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009326 351.0
MMD3_k127_4058347_1 RNA polymerase sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004418 317.0
MMD3_k127_4058347_2 Sigma E regulatory protein, MucB RseB K03598 - - 0.000000000000000000000000000000000000000000000000000000000000002167 237.0
MMD3_k127_4058347_3 Anti sigma-E protein RseA K03597 - - 0.0000000000004947 76.0
MMD3_k127_4061327_0 Belongs to the TPP enzyme family K03852 - 2.3.3.15 2.568e-278 871.0
MMD3_k127_4061327_1 Tripartite tricarboxylate transporter TctA family K07793 - - 3.624e-205 651.0
MMD3_k127_4061327_2 PFAM Glycoside hydrolase 15-related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004268 444.0
MMD3_k127_4061327_3 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002382 398.0
MMD3_k127_4061327_4 Transcriptional regulator K19333 - - 0.000000000000000000000000000000000000000000000000000000000000000000001129 244.0
MMD3_k127_4061327_5 Tripartite tricarboxylate transporter TctB family - - - 0.000000000000000000000000001044 123.0
MMD3_k127_4061466_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 9.4e-323 1012.0
MMD3_k127_4061466_1 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000001572 126.0
MMD3_k127_4061466_2 Transcriptional regulator - - - 0.000000001393 69.0
MMD3_k127_4069928_0 Nitrate reductase beta subunit K00371,K17051 - 1.7.5.1 5.4e-323 992.0
MMD3_k127_4069928_1 nitrate reductase, gamma subunit K00374 - 1.7.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 390.0
MMD3_k127_4069928_2 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 332.0
MMD3_k127_4069928_3 TIGRFAM nitrate reductase molybdenum cofactor assembly chaperone K00373 - - 0.00000000000000000000000000000000000000000000000000000000000000000005198 257.0
MMD3_k127_4069928_4 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K17050 - 1.7.5.1 0.00000000000000000000000000000000000001444 144.0
MMD3_k127_4069928_5 Protein of unknown function (DUF2721) - - - 0.000000000000000000000000000002703 125.0
MMD3_k127_4086750_0 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 1.33e-253 792.0
MMD3_k127_4086750_1 Phosphoesterase family - - - 7.813e-217 685.0
MMD3_k127_4086750_2 domain protein K03320 - - 9.665e-195 636.0
MMD3_k127_4086750_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 411.0
MMD3_k127_4086750_4 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 366.0
MMD3_k127_4086750_5 Oxidoreductase molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 360.0
MMD3_k127_4086750_6 DNA polymerase involved in DNA repair K14161 - - 0.00000000000000000000000000000000000000000000000000000000000000000004821 248.0
MMD3_k127_4086750_8 - - - - 0.0002154 52.0
MMD3_k127_4089217_0 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008978 559.0
MMD3_k127_4089217_1 - - - - 0.00000000000000000000000000000000000000005722 170.0
MMD3_k127_4089217_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000006919 121.0
MMD3_k127_4094373_0 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 464.0
MMD3_k127_4094373_1 in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine K15777 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0046566,GO:0051213,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 319.0
MMD3_k127_4094373_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 307.0
MMD3_k127_4094373_3 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 296.0
MMD3_k127_4094373_4 Mandelate racemase muconate lactonizing enzyme K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 296.0
MMD3_k127_4094373_5 - - - - 0.0000000000000000000000000000000000000000000000007619 179.0
MMD3_k127_4094373_6 - - - - 0.000000000000000000000000000000001757 136.0
MMD3_k127_4094373_7 - - - - 0.00000000000000000000000000001582 123.0
MMD3_k127_4094373_8 Domain of unknown function (DUF1857) - - - 0.00006391 50.0
MMD3_k127_4112221_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 349.0
MMD3_k127_4112221_1 dna polymerase iii K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000005217 227.0
MMD3_k127_4112221_2 PFAM Type IV pilus assembly PilZ K02676 - - 0.0000000000000000000000000000000000000002963 164.0
MMD3_k127_4112221_3 Ankyrin repeat K06867 - - 0.000000000000000000003624 100.0
MMD3_k127_4112221_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000008201 88.0
MMD3_k127_4150483_0 PFAM Extradiol ring-cleavage dioxygenase class III protein subunit B K04099 - 1.13.11.57 4.196e-215 676.0
MMD3_k127_4150483_1 Bacterial regulatory helix-turn-helix protein, lysR family K02623 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 360.0
MMD3_k127_4150483_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 344.0
MMD3_k127_4150483_3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases - - - 0.000000006321 63.0
MMD3_k127_4166969_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1112.0
MMD3_k127_4166969_1 addiction module antidote protein - - - 0.000000000007268 72.0
MMD3_k127_4166969_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00004249 47.0
MMD3_k127_4172049_0 ParB-like nuclease domain K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000188 283.0
MMD3_k127_4172049_1 Zn-dependent hydrolases of the beta-lactamase fold K13985 - 3.1.4.54 0.000000000000000000000000000000000000000000000000000000000000000000000000001119 266.0
MMD3_k127_4172049_2 CAAX protease self-immunity - - - 0.00000000000000000000000000000000001924 145.0
MMD3_k127_4172049_3 Domain of unknown function (DUF4440) - - - 0.000000004635 63.0
MMD3_k127_4177875_0 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001871 260.0
MMD3_k127_4177875_1 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000007188 203.0
MMD3_k127_4177875_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000002633 197.0
MMD3_k127_4177875_3 Succinyldiaminopimelate K14267 - 2.6.1.17 0.0004217 42.0
MMD3_k127_4189198_0 Insulinase (Peptidase family M16) K07263 - - 0.0 1175.0
MMD3_k127_4189198_1 SAF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 302.0
MMD3_k127_4189198_2 PFAM DsrE DsrF-like family K09004 - - 0.00000000000000000000000000000000000000000000000000000000000000003012 233.0
MMD3_k127_4189198_3 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000147 173.0
MMD3_k127_4189198_4 Belongs to the pirin family K06911 - - 0.0000000000000000000000000004634 125.0
MMD3_k127_4189198_5 Cobalt uptake substrate-specific transmembrane region - - - 0.00000000000000000000001082 113.0
MMD3_k127_4189198_6 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000001542 72.0
MMD3_k127_4195580_0 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005193 489.0
MMD3_k127_4195580_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002691 334.0
MMD3_k127_4195580_2 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.00000000000000000000000000000000000000000000000008951 180.0
MMD3_k127_420123_0 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 367.0
MMD3_k127_420123_1 this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 345.0
MMD3_k127_420123_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003863 281.0
MMD3_k127_420123_3 PFAM GTP-binding signal recognition particle SRP54 G- domain K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003002 262.0
MMD3_k127_420123_4 Flagellar motor protein K02557 - - 0.00000000000000000000000001539 113.0
MMD3_k127_4220735_0 D-arabinono-1,4-lactone oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 528.0
MMD3_k127_4220735_1 amino acid aldolase or racemase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000675 280.0
MMD3_k127_4220735_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000001973 109.0
MMD3_k127_4249490_0 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 4.737e-256 818.0
MMD3_k127_4249490_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 4.977e-219 691.0
MMD3_k127_4249490_10 Pfam Response regulator receiver - - - 0.00000000000000000000001601 106.0
MMD3_k127_4249490_2 FAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 507.0
MMD3_k127_4249490_3 (ABC) transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 379.0
MMD3_k127_4249490_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 379.0
MMD3_k127_4249490_5 Transcriptional regulator crp fnr family K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001574 267.0
MMD3_k127_4249490_6 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000000003721 214.0
MMD3_k127_4249490_7 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000003382 147.0
MMD3_k127_4249490_8 Bacterial regulatory proteins, luxR family - - - 0.0000000000000000000000000000000000009529 141.0
MMD3_k127_4249490_9 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000003875 135.0
MMD3_k127_4293619_0 Belongs to the HypD family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009255 589.0
MMD3_k127_4293619_1 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007076 415.0
MMD3_k127_4293619_2 hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007774 413.0
MMD3_k127_4293619_3 HupF/HypC family K04653 - - 0.00000000000000000000004446 102.0
MMD3_k127_429618_0 PFAM 20S proteasome, A and B subunits K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000009453 250.0
MMD3_k127_429618_1 transcriptional regulator K07734 - - 0.0000000000000000000000000000000000000000000002671 188.0
MMD3_k127_429618_2 PFAM regulatory protein, MerR K22491 - - 0.0000000000000000000000000000000000000000297 169.0
MMD3_k127_429618_3 Belongs to the HSP15 family K04762 - - 0.00000000000000000000001295 113.0
MMD3_k127_429618_4 Protein conserved in bacteria - - - 0.0000000000000000000000273 106.0
MMD3_k127_4297064_0 GcpE protein K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 612.0
MMD3_k127_4297064_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 561.0
MMD3_k127_4297064_2 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008626 546.0
MMD3_k127_4297064_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002889 346.0
MMD3_k127_4297064_4 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301 297.0
MMD3_k127_4297064_5 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000007547 214.0
MMD3_k127_4297064_6 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000003091 141.0
MMD3_k127_4297064_7 sequence-specific DNA binding K15539 - - 0.000000000000001434 85.0
MMD3_k127_4369662_0 Belongs to the mannose-6-phosphate isomerase type 2 family K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 535.0
MMD3_k127_4369662_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 387.0
MMD3_k127_4369662_2 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 297.0
MMD3_k127_438563_0 Catalyzes the oxidation of dihydrolipoamide to lipoamide K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003852 597.0
MMD3_k127_438563_1 Zinc metalloprotease (Elastase) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008658 445.0
MMD3_k127_438563_2 Glutaredoxin-family domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004391 374.0
MMD3_k127_438563_3 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 368.0
MMD3_k127_438563_4 PFAM conserved - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 302.0
MMD3_k127_438563_5 Eukaryotic integral membrane protein (DUF1751) - - - 0.000000000000000000000000000000000000000000000000000000000000004206 229.0
MMD3_k127_438563_6 SMART Prolyl 4-hydroxylase, alpha subunit - - - 0.00000000000000000000000000000000000000000000004177 181.0
MMD3_k127_4396764_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000008422 159.0
MMD3_k127_4396764_1 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000235 156.0
MMD3_k127_4396764_2 phosphorelay signal transduction system - - - 0.00000000000000000000000000000471 130.0
MMD3_k127_4401051_0 B12 binding domain - - - 1.188e-213 681.0
MMD3_k127_4401051_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 8.833e-211 661.0
MMD3_k127_4401051_2 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000009915 211.0
MMD3_k127_4401051_3 Invasion gene expression up-regulator, SirB - - - 0.00000000000000000000000000000003069 132.0
MMD3_k127_4401051_4 Belongs to the P-Pant transferase superfamily K06133 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000162 116.0
MMD3_k127_4401051_5 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs - - - 0.0000000000000001727 79.0
MMD3_k127_4404592_0 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 1.751e-238 754.0
MMD3_k127_4404592_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000998 346.0
MMD3_k127_4404592_2 IclR family transcriptional regulator K13641 GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009574 283.0
MMD3_k127_4404592_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.00000000000005344 71.0
MMD3_k127_4406009_0 PFAM extracellular solute-binding protein family 1 K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549 520.0
MMD3_k127_4406009_1 Belongs to the ABC transporter superfamily K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009966 428.0
MMD3_k127_4406009_2 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 - 3.1.4.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004115 400.0
MMD3_k127_4406009_3 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 405.0
MMD3_k127_4406009_4 binding-protein-dependent transport systems inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 366.0
MMD3_k127_4406009_5 ABC-type sulfate transport system, permease component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 359.0
MMD3_k127_4406009_6 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 358.0
MMD3_k127_4407719_0 PFAM Ribulose bisphosphate carboxylase large chain K01601 - 4.1.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 353.0
MMD3_k127_4407719_1 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005775 313.0
MMD3_k127_4407719_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000198 172.0
MMD3_k127_4407719_3 Cupin domain - - - 0.00000000000000000000000000000000000000000000004115 188.0
MMD3_k127_4414086_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005264 362.0
MMD3_k127_4414086_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002548 266.0
MMD3_k127_4421009_0 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000909 407.0
MMD3_k127_4421009_1 KR domain K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 327.0
MMD3_k127_4421009_2 thiamine-containing compound biosynthetic process K02051 - - 0.000000000000000001491 98.0
MMD3_k127_442489_0 Outer membrane protein transport protein (OMPP1/FadL/TodX) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901 455.0
MMD3_k127_442489_1 Luciferase-like monooxygenase K00494 - 1.14.14.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 414.0
MMD3_k127_442489_10 Metal-sensitive transcriptional repressor - - - 0.000000000001093 83.0
MMD3_k127_442489_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 291.0
MMD3_k127_442489_3 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008628 260.0
MMD3_k127_442489_4 Glycine cleavage H-protein K02437 - - 0.000000000000000000000000000000000000000000000000000000000000000000005136 237.0
MMD3_k127_442489_5 E1-E2 ATPase K01535 - 3.6.3.6 0.000000000000000000000000000000000000000000000000000000000000003894 224.0
MMD3_k127_442489_6 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.000000000000000000000000000000000000000000000000000000537 207.0
MMD3_k127_442489_7 P-aminobenzoate N-oxygenase AurF - - - 0.000000000000000000000000000000000000000000000000000000784 205.0
MMD3_k127_442489_8 - - - - 0.0000000000000000000000000000000000003137 152.0
MMD3_k127_442489_9 transcriptional regulators K22042 - - 0.000000000000000000000000003097 116.0
MMD3_k127_4446289_0 COG0010 Arginase agmatinase formimionoglutamate hydrolase, arginase family K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008149 475.0
MMD3_k127_4446289_1 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 407.0
MMD3_k127_4446289_2 Belongs to the skp family K06142 - - 0.00000000000000001149 92.0
MMD3_k127_4453424_0 PFAM aminotransferase, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 398.0
MMD3_k127_4453424_1 HD domain K13815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 386.0
MMD3_k127_4453424_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000001024 60.0
MMD3_k127_445984_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 576.0
MMD3_k127_445984_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 434.0
MMD3_k127_445984_2 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 416.0
MMD3_k127_445984_3 Glycosyl transferases group 1 K02844 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005908 349.0
MMD3_k127_445984_4 Bacterial regulatory proteins, tetR family K05501 - - 0.0000000000000000000000000000000000000000000000000000000000001504 241.0
MMD3_k127_4480331_0 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 3.242e-202 638.0
MMD3_k127_4480331_1 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 532.0
MMD3_k127_4480331_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 379.0
MMD3_k127_4480331_3 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.0000000000000000000000000000000000000000000000000013 188.0
MMD3_k127_4480331_4 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.00000000000001089 74.0
MMD3_k127_4484909_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 359.0
MMD3_k127_4484909_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002482 360.0
MMD3_k127_4484909_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 317.0
MMD3_k127_4484909_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003065 276.0
MMD3_k127_4484909_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001631 273.0
MMD3_k127_4509115_0 AMP-binding enzyme C-terminal domain K00666 - - 1.641e-204 649.0
MMD3_k127_4509115_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 614.0
MMD3_k127_4509115_2 beta-keto acid cleavage enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005196 438.0
MMD3_k127_4509115_3 Shikimate dehydrogenase substrate binding domain K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 421.0
MMD3_k127_4509115_4 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 382.0
MMD3_k127_4509115_5 Short-chain dehydrogenase reductase (SDR) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 304.0
MMD3_k127_4509115_6 - - - - 0.0000000000002899 82.0
MMD3_k127_4513382_0 Belongs to the glycosyl hydrolase 31 family K01811 GO:0003674,GO:0003824,GO:0004553,GO:0005488,GO:0005515,GO:0016787,GO:0016798,GO:0042802,GO:0080176 3.2.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000639 544.0
MMD3_k127_4513382_1 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 349.0
MMD3_k127_4513382_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 310.0
MMD3_k127_4513382_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001073 276.0
MMD3_k127_4513382_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000002181 259.0
MMD3_k127_4513382_5 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000002304 213.0
MMD3_k127_4513382_6 YGGT family K02221 - - 0.000000000000000000000000000000000008212 144.0
MMD3_k127_4513382_7 DUF167 K09131 - - 0.0000000000000000000001022 108.0
MMD3_k127_4530669_0 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 370.0
MMD3_k127_4530669_1 Transcriptional regulator K02624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 317.0
MMD3_k127_4530669_2 PFAM Xylose isomerase domain protein TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 288.0
MMD3_k127_4530669_3 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005711 264.0
MMD3_k127_4530669_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.00000000000000000000000000000000000000000000000000000000000000000000000004482 271.0
MMD3_k127_4530878_0 HELICc2 K03722 - 3.6.4.12 1.685e-234 753.0
MMD3_k127_4530878_1 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 575.0
MMD3_k127_4530878_2 Enoyl-(Acyl carrier protein) reductase K00059,K00076 - 1.1.1.100,1.1.1.159 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 355.0
MMD3_k127_4530878_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 355.0
MMD3_k127_4530878_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007193 306.0
MMD3_k127_4530878_5 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002749 269.0
MMD3_k127_4530878_6 ZIP Zinc transporter K16267 - - 0.00000000000000000000000000000000000000000000000000000000000004112 232.0
MMD3_k127_4530878_7 PFAM Cytochrome C K17230 - - 0.0000000000000000001616 89.0
MMD3_k127_4557263_0 Ftsk_gamma K03466 - - 1.05e-270 843.0
MMD3_k127_4557263_1 MgsA AAA+ ATPase C terminal K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 601.0
MMD3_k127_4557263_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 593.0
MMD3_k127_4557263_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 464.0
MMD3_k127_4557263_4 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 376.0
MMD3_k127_4557263_5 Creatinine amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 296.0
MMD3_k127_4557263_6 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 298.0
MMD3_k127_4557263_7 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000000000000000000000000000000000000000001193 224.0
MMD3_k127_4559464_0 Radical SAM K01012 - 2.8.1.6 1.735e-211 670.0
MMD3_k127_4559464_1 biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 426.0
MMD3_k127_4559464_2 GMP synthase (glutamine-hydrolyzing) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000003209 240.0
MMD3_k127_4559464_3 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000001502 224.0
MMD3_k127_4559464_4 geranylgeranyl reductase - - - 0.000000000000000000002511 96.0
MMD3_k127_4576531_0 SOS response associated peptidase (SRAP) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000214 242.0
MMD3_k127_4576531_1 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.000000000000000000000000000000000000000000000000000000000000000004089 243.0
MMD3_k127_4576531_2 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000000000004532 211.0
MMD3_k127_4576531_3 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000003243 213.0
MMD3_k127_4576531_4 - - - - 0.000000000000000000000000000000000000000006883 165.0
MMD3_k127_4576531_5 AsmA family K07289,K07290 - - 0.000000000000000000000004475 114.0
MMD3_k127_4576531_6 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.00000000000005034 81.0
MMD3_k127_4576531_7 OmpA-like transmembrane domain K03286 - - 0.0002679 52.0
MMD3_k127_4577784_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 5.706e-261 832.0
MMD3_k127_4577784_1 Protein of unknown function - - - 3.299e-246 808.0
MMD3_k127_4577784_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 498.0
MMD3_k127_4577784_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 GO:0003674,GO:0003824,GO:0004084,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006531,GO:0006532,GO:0006551,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009098,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 460.0
MMD3_k127_4577784_4 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 340.0
MMD3_k127_4577784_5 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 337.0
MMD3_k127_4577784_6 Small MutS-related domain - - - 0.00000000000000000000000000000000000000000118 169.0
MMD3_k127_4577784_7 FtsK SpoIIIE family protein K03466 - - 0.000000000000000000000000000000001116 134.0
MMD3_k127_4577784_8 Zinc-finger domain - - - 0.00000000000000002665 94.0
MMD3_k127_4577784_9 SnoaL-like domain - - - 0.0000000000000001727 93.0
MMD3_k127_4581754_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 525.0
MMD3_k127_4581754_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 471.0
MMD3_k127_4581754_2 epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 355.0
MMD3_k127_4581754_3 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000001146 196.0
MMD3_k127_4586231_0 Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 530.0
MMD3_k127_4586231_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 350.0
MMD3_k127_4586231_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002319 258.0
MMD3_k127_4586231_3 - - - - 0.000000000000000000000002352 114.0
MMD3_k127_4586231_4 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000004009 72.0
MMD3_k127_4593706_0 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000278 526.0
MMD3_k127_4593706_1 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004645 283.0
MMD3_k127_4593706_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000006872 243.0
MMD3_k127_4593706_3 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000302 241.0
MMD3_k127_4593706_4 methyltransferase - - - 0.000000000000000000000000000000000000000000000000007711 192.0
MMD3_k127_4593706_5 Domain of unknown function (DUF1993) K09983 - - 0.000000000006691 65.0
MMD3_k127_4593706_6 Transcriptional regulator K03566 - - 0.00000000001947 73.0
MMD3_k127_4593706_7 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K02858 - 4.1.99.12 0.0000000009838 68.0
MMD3_k127_4597286_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1039.0
MMD3_k127_4597286_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 8.144e-277 861.0
MMD3_k127_4597286_10 Regulatory protein, FmdB family - - - 0.000000000000000000001532 107.0
MMD3_k127_4597286_11 Protein of unknown function (DUF541) - - - 0.00000000000000003587 94.0
MMD3_k127_4597286_12 Barstar (barnase inhibitor) - - - 0.0000000000001086 81.0
MMD3_k127_4597286_13 - - - - 0.0000001337 59.0
MMD3_k127_4597286_2 C-terminal region of band_7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 434.0
MMD3_k127_4597286_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 356.0
MMD3_k127_4597286_4 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008019 270.0
MMD3_k127_4597286_5 NUDIX domain K08310 - 3.6.1.67 0.000000000000000000000000000000000000000000000000000009466 199.0
MMD3_k127_4597286_6 tRNA pseudouridylate synthase B C-terminal domain K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000001402 177.0
MMD3_k127_4597286_7 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000000001675 145.0
MMD3_k127_4597286_8 Ribonuclease K01167 - 3.1.27.3 0.000000000000000000000000000000001553 136.0
MMD3_k127_4597286_9 Membrane protein implicated in regulation of membrane protease activity - - - 0.000000000000000000000000000001305 125.0
MMD3_k127_4601778_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 1.194e-208 670.0
MMD3_k127_4601778_1 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.0000000000000000000000000000000000000000000000000000002045 201.0
MMD3_k127_4601778_2 AMP-dependent synthetase - - - 0.0000000000000003914 79.0
MMD3_k127_4610792_0 CobB/CobQ-like glutamine amidotransferase domain K01952 - 6.3.5.3 3.54e-269 844.0
MMD3_k127_4610792_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002168 407.0
MMD3_k127_4610792_2 PFAM ABC transporter related K10004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 407.0
MMD3_k127_4610792_3 Bacterial periplasmic substrate-binding proteins K02030,K10001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 373.0
MMD3_k127_4610792_4 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K02029,K10003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 345.0
MMD3_k127_4610792_5 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K10002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 324.0
MMD3_k127_4610792_6 NADPH quinone K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006605 270.0
MMD3_k127_4615448_0 PFAM PrkA AAA K07180 - - 6.777e-255 794.0
MMD3_k127_4615448_1 SpoVR like protein K06415 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 575.0
MMD3_k127_4615448_2 Belongs to the UPF0229 family K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002429 414.0
MMD3_k127_462155_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1036.0
MMD3_k127_462155_1 Participates in both transcription termination and antitermination K02600 - - 1.799e-222 706.0
MMD3_k127_462155_2 AAA-like domain K06915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 494.0
MMD3_k127_462155_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000000000000001067 153.0
MMD3_k127_462155_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000000003343 135.0
MMD3_k127_462155_5 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.0002962 43.0
MMD3_k127_4623512_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 373.0
MMD3_k127_4623512_1 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 355.0
MMD3_k127_4623512_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006163 311.0
MMD3_k127_4623512_3 - - - - 0.00000000000000000006253 105.0
MMD3_k127_4623512_4 Protein of unknown function (DUF2782) - - - 0.0000000000000001634 86.0
MMD3_k127_4625581_0 Poly-beta-1,6-N-acetyl-D-glucosamine synthase K11936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 586.0
MMD3_k127_4625581_1 glycosyl transferase family 8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 457.0
MMD3_k127_4625581_10 Putative zinc-finger - - - 0.000000002209 62.0
MMD3_k127_4625581_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006859 427.0
MMD3_k127_4625581_3 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 329.0
MMD3_k127_4625581_4 Pfam Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 350.0
MMD3_k127_4625581_5 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 308.0
MMD3_k127_4625581_6 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005517 284.0
MMD3_k127_4625581_7 ABC-type sugar transport system, permease component K02026,K05815 - - 0.00000000000000000000000000000000000000000000000000000000000000007779 222.0
MMD3_k127_4625581_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000001713 214.0
MMD3_k127_4625581_9 thiamine biosynthesis protein ThiS K03154 - - 0.00000000000000003361 83.0
MMD3_k127_4626099_0 Hsp90 protein K04079 - - 5e-324 1005.0
MMD3_k127_4626099_1 oxidase, subunit K00425 - 1.10.3.14 4.615e-252 788.0
MMD3_k127_4626099_10 - - - - 0.000000000000000002814 85.0
MMD3_k127_4626099_11 Histidine kinase-like ATPases - - - 0.00000000000005034 81.0
MMD3_k127_4626099_2 Tripartite tricarboxylate transporter TctA family K07793 - - 2.206e-233 734.0
MMD3_k127_4626099_3 oxidase, subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 600.0
MMD3_k127_4626099_4 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 570.0
MMD3_k127_4626099_5 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007733 401.0
MMD3_k127_4626099_6 TIGRFAM ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC K16012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000752 359.0
MMD3_k127_4626099_7 Transcriptional regulatory protein, C terminal K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000005122 241.0
MMD3_k127_4626099_8 Tripartite tricarboxylate transporter TctB family - - - 0.0000000000000000000000000000000000000000000000000125 185.0
MMD3_k127_4626099_9 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000127 96.0
MMD3_k127_4640657_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 2.125e-223 706.0
MMD3_k127_4640657_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 1.024e-209 686.0
MMD3_k127_4640657_10 Acetyl-coenzyme A transporter 1 K08218 - - 0.00000000000000002996 94.0
MMD3_k127_4640657_11 phosphocarrier, HPr family K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000005757 77.0
MMD3_k127_4640657_2 ATPases associated with a variety of cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 436.0
MMD3_k127_4640657_3 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 401.0
MMD3_k127_4640657_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000789 300.0
MMD3_k127_4640657_5 Protein of unknown function (DUF3570) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008529 293.0
MMD3_k127_4640657_6 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000962 162.0
MMD3_k127_4640657_7 Phosphotransferase system, mannose fructose-specific component IIA K02821 - 2.7.1.194 0.00000000000000000000000000000000000000001086 158.0
MMD3_k127_4640657_8 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.0000000000000000000000000000000007973 131.0
MMD3_k127_4640657_9 phosphocarrier, HPr family K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000005425 129.0
MMD3_k127_4669607_0 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002297 285.0
MMD3_k127_4669607_1 Phosphoribosyl transferase domain K07101 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001956 254.0
MMD3_k127_4669607_2 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000000000000000000000000000000103 244.0
MMD3_k127_468507_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 4.595e-223 698.0
MMD3_k127_468507_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 577.0
MMD3_k127_4716846_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0 1109.0
MMD3_k127_4753644_0 ABC-type multidrug transport system, ATPase and permease K06147 - - 1.309e-204 651.0
MMD3_k127_4753644_1 Aminotransferase class I and II K00832 - 2.6.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 593.0
MMD3_k127_4753644_3 OmpA-like transmembrane domain - - - 0.00001387 56.0
MMD3_k127_4764152_0 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 492.0
MMD3_k127_4764152_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 363.0
MMD3_k127_4780300_0 Thi4 family - - - 7.547e-229 722.0
MMD3_k127_4780300_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 359.0
MMD3_k127_4780300_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04565 - 1.15.1.1 0.00000001306 63.0
MMD3_k127_4786273_0 sulfuric ester hydrolase activity K01992 - - 0.0000000000000000000000000000004667 133.0
MMD3_k127_4786273_1 Nucleotidyltransferase - - - 0.0000000000000000000007182 104.0
MMD3_k127_4797076_0 PFAM Type II secretion system protein E K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009983 385.0
MMD3_k127_4797076_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000009811 251.0
MMD3_k127_4797076_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001148 249.0
MMD3_k127_4797076_3 Alpha beta K07018 - - 0.000000000000000000000000000000000000003034 151.0
MMD3_k127_4797076_4 integral membrane protein K02221 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000226 141.0
MMD3_k127_4797076_5 Belongs to the bacterial histone-like protein family - - - 0.000000000000000000000000000004534 124.0
MMD3_k127_4797076_6 Belongs to the UPF0235 family K09131 - - 0.0000000000000000000004941 98.0
MMD3_k127_4804618_0 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003149 270.0
MMD3_k127_4804618_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K21345 - 2.7.7.70 0.0000000000000000000000000000000000000000000000000009894 187.0
MMD3_k127_4804618_2 General function prediction only - - - 0.00000000000000000000000000000000000000000000001595 179.0
MMD3_k127_4804618_3 LppC putative lipoprotein K07121 - - 0.0000000000000000000000000000006772 130.0
MMD3_k127_4804618_4 nucleic acid phosphodiester bond hydrolysis K07460 - - 0.000000000000000000000000002514 117.0
MMD3_k127_4838457_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005527 616.0
MMD3_k127_4838457_1 Helix-hairpin-helix domain K04477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 327.0
MMD3_k127_4838457_2 Dienelactone hydrolase family K07100 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001655 259.0
MMD3_k127_4838457_3 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000001242 239.0
MMD3_k127_4838457_4 S-acyltransferase activity K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000472 180.0
MMD3_k127_4838457_5 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000000000000000001559 144.0
MMD3_k127_4838457_6 Phosphopantetheine attachment site - - - 0.000000000000000000000005542 105.0
MMD3_k127_4858380_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1115.0
MMD3_k127_4858380_1 Solute carrier family 35 - - - 0.000000000000000000000000000000000000000000000000000276 198.0
MMD3_k127_4864582_0 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 602.0
MMD3_k127_4864582_1 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 291.0
MMD3_k127_4864582_2 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000002173 108.0
MMD3_k127_4881777_0 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 340.0
MMD3_k127_4881777_1 Protein of unknown function (DUF1615) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 338.0
MMD3_k127_4881777_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 324.0
MMD3_k127_4881777_3 Deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001764 282.0
MMD3_k127_4881777_4 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) - - - 0.00000000000000000000000000000000001201 141.0
MMD3_k127_4916753_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 1.241e-305 947.0
MMD3_k127_4916753_1 Coenzyme A transferase K01027,K01029 - 2.8.3.5 4.039e-229 749.0
MMD3_k127_4916753_10 phenylacetic acid degradation protein K02614 - - 0.00000000000000000000000000000000000000000000000000000001647 201.0
MMD3_k127_4916753_11 DinB superfamily - - - 0.00000000001074 64.0
MMD3_k127_4916753_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 1.275e-210 671.0
MMD3_k127_4916753_3 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 462.0
MMD3_k127_4916753_4 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009123 464.0
MMD3_k127_4916753_5 PFAM regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 403.0
MMD3_k127_4916753_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 385.0
MMD3_k127_4916753_7 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009445 351.0
MMD3_k127_4916753_8 Histidine-specific methyltransferase, SAM-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006502 285.0
MMD3_k127_4916753_9 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000004919 240.0
MMD3_k127_4959302_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008782 462.0
MMD3_k127_4959302_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 440.0
MMD3_k127_4959302_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 441.0
MMD3_k127_4959302_3 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 384.0
MMD3_k127_4959302_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005543 329.0
MMD3_k127_4959302_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000001097 139.0
MMD3_k127_4959302_6 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.00000000000000000000000006446 116.0
MMD3_k127_4959302_7 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000003013 85.0
MMD3_k127_4959302_8 Maf-like protein K06287 - - 0.0000000003937 61.0
MMD3_k127_4976932_0 Zinc-binding dehydrogenase K00001,K19745 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 437.0
MMD3_k127_4976932_1 Amidase K21801 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 351.0
MMD3_k127_4976932_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000004058 207.0
MMD3_k127_4976932_3 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000013 113.0
MMD3_k127_4976932_4 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000001819 74.0
MMD3_k127_4988569_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 542.0
MMD3_k127_4988569_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006833 483.0
MMD3_k127_4988569_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000005607 133.0
MMD3_k127_4988569_3 Transposase and inactivated derivatives - - - 0.00000002747 58.0
MMD3_k127_4999120_0 Mg-protoporphyrin IX monomethyl ester oxidative cyclase K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 595.0
MMD3_k127_4999120_1 B12 binding domain - - - 0.000000000000000000000006282 102.0
MMD3_k127_5004228_0 PFAM Sulfate transporter antisigma-factor antagonist STAS - - - 2.761e-246 771.0
MMD3_k127_5004228_1 CHAD - - - 0.00000000000000000000000000000000000000000000000000000000000003404 228.0
MMD3_k127_5005853_0 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 371.0
MMD3_k127_5005853_1 MarR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002191 367.0
MMD3_k127_5005853_2 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008401 361.0
MMD3_k127_5005853_3 Amidase - - - 0.00000000000000000000000000000000000000000000000000000000000007942 222.0
MMD3_k127_5005853_4 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000003982 161.0
MMD3_k127_5023663_0 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 394.0
MMD3_k127_5023663_1 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 353.0
MMD3_k127_5023663_2 metal-dependent hydrolase of the TIM-barrel fold K10221 - 3.1.1.57 0.000000000000000000000000000000000000000000000000000000000000000000000000003096 258.0
MMD3_k127_5023663_3 Carboxymuconolactone decarboxylase - - - 0.000000000000000000000000000000000000000000000000000000002049 206.0
MMD3_k127_5023663_4 - - - - 0.0000000000000000000003354 104.0
MMD3_k127_5058301_0 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006086 473.0
MMD3_k127_5058301_1 NAD(P)H-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 326.0
MMD3_k127_5058301_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001501 273.0
MMD3_k127_5058301_3 HemX, putative uroporphyrinogen-III C-methyltransferase K02496 - 2.1.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000001025 260.0
MMD3_k127_5058301_4 HemY domain protein K02498 - - 0.0000000000000000000000000000000000000000000000000000000000000000006844 244.0
MMD3_k127_5068685_0 Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps (A) adenylation of the enzyme by ATP K01974 - 6.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 339.0
MMD3_k127_5068685_1 Phage plasmid primase P4 family K06919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006772 306.0
MMD3_k127_5068685_2 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 304.0
MMD3_k127_5068685_3 Belongs to the V-ATPase 116 kDa subunit family K02123 - - 0.0000000000000000000000000000000000000000000000000000000000002092 225.0
MMD3_k127_5068685_4 Cupin - - - 0.000000000000000000000000000000000000000000002916 169.0
MMD3_k127_5068685_5 - - - - 0.0000000000000000000000000000000007201 151.0
MMD3_k127_5068685_6 - - - - 0.0000000000000000000000003571 118.0
MMD3_k127_5068685_7 Protein of unknown function (DUF504) - - - 0.0000000000000000001223 104.0
MMD3_k127_5088563_0 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K01685,K01708,K16846 - 4.2.1.42,4.2.1.7,4.4.1.24 2.786e-243 771.0
MMD3_k127_5088563_1 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 589.0
MMD3_k127_5088563_2 Belongs to the IlvD Edd family K13875 - 4.2.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 477.0
MMD3_k127_5088563_3 Regulatory protein GntR HTH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002708 248.0
MMD3_k127_5095078_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001637 578.0
MMD3_k127_5095078_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 345.0
MMD3_k127_5095078_2 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 316.0
MMD3_k127_5095078_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000001277 211.0
MMD3_k127_5095078_4 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000009072 194.0
MMD3_k127_5100787_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004572 534.0
MMD3_k127_5100787_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006351 499.0
MMD3_k127_5100787_2 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000000000000404 197.0
MMD3_k127_5100787_3 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000000000000008806 154.0
MMD3_k127_5103410_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 0.0 1602.0
MMD3_k127_5103410_1 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 1.744e-200 637.0
MMD3_k127_5103410_10 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000000000000000000000000000000000000005086 171.0
MMD3_k127_5103410_11 PFAM Glutamine - - - 0.000000000000000000000000000000000000005051 153.0
MMD3_k127_5103410_2 Phosphoesterase family K01114 - 3.1.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 565.0
MMD3_k127_5103410_3 HI0933 family K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 482.0
MMD3_k127_5103410_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004894 470.0
MMD3_k127_5103410_5 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009206 411.0
MMD3_k127_5103410_6 Abc transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 370.0
MMD3_k127_5103410_7 MASE2 domain K18968 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005314 280.0
MMD3_k127_5103410_8 PFAM Mammalian cell entry related domain protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000001237 217.0
MMD3_k127_5103410_9 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000002512 189.0
MMD3_k127_5128245_0 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 430.0
MMD3_k127_5128245_1 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 367.0
MMD3_k127_5128245_2 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 329.0
MMD3_k127_5128245_3 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000171 176.0
MMD3_k127_5133066_0 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003553 457.0
MMD3_k127_5133066_1 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001522 398.0
MMD3_k127_5133066_2 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 359.0
MMD3_k127_522193_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003008 289.0
MMD3_k127_522193_1 Involved in arsenical resistance. Thought to form the channel of an arsenite pump - - - 0.000000000000000000000002394 110.0
MMD3_k127_522193_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000006693 90.0
MMD3_k127_52791_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.228e-202 641.0
MMD3_k127_52791_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 369.0
MMD3_k127_52791_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000006041 87.0
MMD3_k127_544769_0 lipoprotein releasing system, transmembrane protein, LolC E family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 528.0
MMD3_k127_544769_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 330.0
MMD3_k127_544769_2 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006961 319.0
MMD3_k127_544769_3 PFAM isochorismatase hydrolase K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 293.0
MMD3_k127_544769_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000004817 240.0
MMD3_k127_544769_5 DNA polymerase X family K02347 - - 0.000000000000000000000000000000000000000000000000000000000000005055 233.0
MMD3_k127_544769_6 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000001058 171.0
MMD3_k127_547390_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2100.0
MMD3_k127_547930_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006985 588.0
MMD3_k127_547930_1 COG1960 Acyl-CoA dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 576.0
MMD3_k127_547930_2 Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA K00253 - 1.3.8.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 287.0
MMD3_k127_547930_3 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000006516 217.0
MMD3_k127_547930_4 Lysine exporter protein (Lyse ygga) - - - 0.0000000000000000000000000000000000000000000000000000002261 215.0
MMD3_k127_547930_5 MaoC like domain - - - 0.00000000000000000000000000000001463 132.0
MMD3_k127_587723_0 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 616.0
MMD3_k127_587723_1 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000008181 261.0
MMD3_k127_608194_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 497.0
MMD3_k127_608194_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007201 276.0
MMD3_k127_608194_2 Protein of unknown function (DUF3305) - - - 0.000000000000000000000000000001051 126.0
MMD3_k127_609321_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 592.0
MMD3_k127_609321_1 outer membrane cobalamin receptor K02014,K16092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 454.0
MMD3_k127_609321_2 Periplasmic binding protein K02016,K06858 - - 0.000000000000000000000001895 118.0
MMD3_k127_619176_0 Aminotransferase K14261 - - 4.792e-213 667.0
MMD3_k127_619176_1 Homoserine dehydrogenase K00003 - 1.1.1.3 1.614e-199 650.0
MMD3_k127_619176_2 Prolyl 4-hydroxylase alpha subunit homologues. K07336 - - 0.0000000000000000000000000000000000000000000000000000000000013 221.0
MMD3_k127_619176_3 Rrf2 family transcriptional regulator K13771 - - 0.00000000000000000000000000000000000000000000009584 174.0
MMD3_k127_619176_4 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000009763 172.0
MMD3_k127_619176_5 Protein of unknown function (DUF498/DUF598) - - - 0.0000000000000000000000000000000002899 136.0
MMD3_k127_63670_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 378.0
MMD3_k127_63670_1 AMP-binding enzyme K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000001649 201.0
MMD3_k127_63670_2 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000000000000000000002187 195.0
MMD3_k127_63670_3 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000005497 119.0
MMD3_k127_63670_4 - - - - 0.0000000006331 68.0
MMD3_k127_640786_0 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 424.0
MMD3_k127_640786_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001665 244.0
MMD3_k127_640786_2 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000112 215.0
MMD3_k127_640786_3 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000001786 196.0
MMD3_k127_640786_4 associated with various cellular activities K03924 - - 0.000000000000000000000000000000001089 132.0
MMD3_k127_640786_5 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000002102 94.0
MMD3_k127_644373_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 1.826e-212 668.0
MMD3_k127_644373_1 Conserved carboxylase domain K01571 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 617.0
MMD3_k127_644373_2 Transcriptional regulator K02624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002817 254.0
MMD3_k127_644373_3 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000002373 179.0
MMD3_k127_647287_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1079.0
MMD3_k127_647287_1 TIR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 346.0
MMD3_k127_647287_2 Phage lysozyme - - - 0.000000000000000000002228 98.0
MMD3_k127_649844_0 COG1506 Dipeptidyl aminopeptidases acylaminoacyl-peptidases - - - 5.08e-248 788.0
MMD3_k127_649844_1 4Fe-4S dicluster domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 528.0
MMD3_k127_649844_2 PFAM thioesterase superfamily protein K07107 - - 0.000000000000000000000000000000000000000000000000001715 202.0
MMD3_k127_649844_3 acetyltransferase - - - 0.000000000000000000000000000000000000009582 157.0
MMD3_k127_649844_4 FAD binding domain K11472 - - 0.0000000000000000007782 89.0
MMD3_k127_649844_5 FAD binding domain K11472 - - 0.00000002225 55.0
MMD3_k127_674804_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 357.0
MMD3_k127_674804_1 Sigma factor PP2C-like phosphatases K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000629 184.0
MMD3_k127_674804_2 stress-induced protein - - - 0.00000000000000000000000000000000000000000008038 164.0
MMD3_k127_674804_3 PFAM YicC-like - - - 0.00000000000000000000005756 110.0
MMD3_k127_674804_4 denitrification pathway - - - 0.00000000086 66.0
MMD3_k127_692213_0 Heat shock 70 kDa protein K04043 - - 1.238e-320 987.0
MMD3_k127_692213_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 447.0
MMD3_k127_692213_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005269 409.0
MMD3_k127_692213_3 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000001909 240.0
MMD3_k127_692213_4 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000000000000000000000104 166.0
MMD3_k127_698166_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 597.0
MMD3_k127_698166_1 pfkB family carbohydrate kinase K03272,K21344 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 404.0
MMD3_k127_698166_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000001834 193.0
MMD3_k127_698166_3 O-linked N-acetylglucosamine transferase SPINDLY family - - - 0.00000000000000000000009296 100.0
MMD3_k127_699615_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.028e-217 688.0
MMD3_k127_699615_1 CoA-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 548.0
MMD3_k127_699615_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 564.0
MMD3_k127_699615_3 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 297.0
MMD3_k127_699615_4 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.0000000000000000000000000000000000004322 153.0
MMD3_k127_704418_0 Xylose isomerase domain protein TIM barrel K00457 - 1.13.11.27 7.464e-227 717.0
MMD3_k127_704418_1 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 314.0
MMD3_k127_704418_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000001073 244.0
MMD3_k127_704418_3 NIPSNAP - - - 0.00000000000000000000000000000000000000000000000000003148 196.0
MMD3_k127_747141_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 9.18e-236 740.0
MMD3_k127_747141_1 - - - - 0.00003763 56.0
MMD3_k127_757221_0 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003031 308.0
MMD3_k127_757221_1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000001769 191.0
MMD3_k127_757221_2 - - - - 0.00000000000000000000000000000000000000003211 170.0
MMD3_k127_757221_3 PFAM cobalamin (vitamin B12) biosynthesis CbiX protein K03795 - 4.99.1.3 0.00000000000000000000000000002876 130.0
MMD3_k127_758735_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 527.0
MMD3_k127_758735_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 531.0
MMD3_k127_758735_2 PFAM FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 452.0
MMD3_k127_758735_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008672 376.0
MMD3_k127_758735_4 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002664 297.0
MMD3_k127_758735_5 Protein of unknown function (DUF1282) - - - 0.0000000000000000000000000000000000005836 147.0
MMD3_k127_758735_6 Ribosomal protein L31 K02909 - - 0.000000000000000000000000000001122 125.0
MMD3_k127_77750_0 Dynamin family - - - 1.446e-226 720.0
MMD3_k127_77750_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004353 325.0
MMD3_k127_77750_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000002656 241.0
MMD3_k127_77750_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000002684 198.0
MMD3_k127_77750_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000001344 172.0
MMD3_k127_77750_5 Methyltransferase K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000002213 169.0
MMD3_k127_77750_6 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000003961 151.0
MMD3_k127_79632_0 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004781 370.0
MMD3_k127_79632_1 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000008044 216.0
MMD3_k127_79632_2 Histidine kinase K01768,K02660,K03406,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000009579 213.0
MMD3_k127_79632_3 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000004145 184.0
MMD3_k127_79632_4 Belongs to the UPF0145 family - - - 0.000000000000000000000000000000000000000005868 157.0
MMD3_k127_79632_5 Domain of unknown function (DUF1772) - - - 0.000000000000000000000000000001837 126.0
MMD3_k127_798772_0 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 462.0
MMD3_k127_798772_1 Fungal family of unknown function (DUF1776) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 354.0
MMD3_k127_798772_2 Belongs to the HpcH HpaI aldolase family K01630,K02510 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0008150,GO:0008152,GO:0016829,GO:0016830,GO:0016832,GO:0044238,GO:0044424,GO:0044464,GO:0071704 4.1.2.20,4.1.2.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000856 271.0
MMD3_k127_798772_3 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002618 250.0
MMD3_k127_798772_4 Tripartite tricarboxylate transporter family receptor - - - 0.000001225 51.0
MMD3_k127_798782_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000748 563.0
MMD3_k127_798782_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 479.0
MMD3_k127_798782_2 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 303.0
MMD3_k127_798782_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000002664 256.0
MMD3_k127_798782_4 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000001026 244.0
MMD3_k127_798782_5 Peptidyl-tRNA hydrolase K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000007194 216.0
MMD3_k127_798782_6 - - - - 0.000000002539 66.0
MMD3_k127_798782_7 Late embryogenesis abundant protein - - - 0.00000114 59.0
MMD3_k127_826482_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 1.47e-298 925.0
MMD3_k127_826482_1 Protein of unknown function (DUF1326) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004456 282.0
MMD3_k127_826482_2 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.0000000000000000000000000000000000000000000000000000000000000004122 232.0
MMD3_k127_826482_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000533 122.0
MMD3_k127_831355_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 1.745e-283 880.0
MMD3_k127_831355_1 Belongs to the thiolase family K00626 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 536.0
MMD3_k127_831355_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 380.0
MMD3_k127_831355_3 Carbon monoxide dehydrogenase subunit G (CoxG) K09386 - - 0.000000000000000000000000000000000000000000000000001789 192.0
MMD3_k127_833389_0 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000002701 207.0
MMD3_k127_833389_1 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000001617 165.0
MMD3_k127_833389_2 Redoxin - - - 0.0000000000000000000000000000000000000001798 156.0
MMD3_k127_833389_3 exo-alpha-(2->6)-sialidase activity - - - 0.000006674 55.0
MMD3_k127_835588_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008986,GO:0009058,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576 2.7.9.2 0.0 1099.0
MMD3_k127_835588_1 PFAM Acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 567.0
MMD3_k127_835588_2 Short-chain dehydrogenase reductase SDR - - - 0.000000000000000000000000000000000000000000000000000000000000000000001734 246.0
MMD3_k127_837829_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 3.547e-198 630.0
MMD3_k127_837829_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 319.0
MMD3_k127_837829_2 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003235 258.0
MMD3_k127_837829_3 Sulfotransferase domain - - - 0.00002651 53.0
MMD3_k127_875143_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 5.956e-314 979.0
MMD3_k127_883467_0 Cys/Met metabolism PLP-dependent enzyme K01760 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 479.0
MMD3_k127_883467_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 375.0
MMD3_k127_883467_2 Peptidase C26 K01658,K07010 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005153 351.0
MMD3_k127_883467_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000004333 203.0
MMD3_k127_883467_4 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000009788 182.0
MMD3_k127_890261_0 TIGRFAM glutamate synthase, NADH NADPH, small subunit K00266 - 1.4.1.13,1.4.1.14 1.5e-231 726.0
MMD3_k127_890261_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.474e-214 679.0
MMD3_k127_890261_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 602.0
MMD3_k127_890261_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 424.0
MMD3_k127_890261_4 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 331.0
MMD3_k127_890261_5 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.00000000000000000000000000000000000000000000000000000000000000003549 227.0
MMD3_k127_890261_6 Sporulation related domain - - - 0.0000002808 60.0
MMD3_k127_905175_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 472.0
MMD3_k127_905175_1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 424.0
MMD3_k127_905175_2 type I secretion outer membrane protein, TolC K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 355.0
MMD3_k127_905175_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 291.0
MMD3_k127_905175_4 Glycosyltransferase family 9 (heptosyltransferase) K02841 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004642 259.0
MMD3_k127_905175_5 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000003941 251.0
MMD3_k127_905175_6 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000818 178.0
MMD3_k127_905175_7 RmlD substrate binding domain K08679 - 5.1.3.6 0.0000000000000000000000000000000488 132.0
MMD3_k127_907511_0 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 315.0
MMD3_k127_907511_1 - - - - 0.000000000000000000000000000000001338 146.0
MMD3_k127_907511_2 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.00000000000000000000000000002834 119.0
MMD3_k127_909897_0 sulfite reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 1.084e-246 777.0
MMD3_k127_909897_1 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 8.562e-213 665.0
MMD3_k127_909897_2 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007665 365.0
MMD3_k127_909897_3 Sulfurtransferase TusA - - - 0.000000000000000000000000000000000000000000000000000000000007456 211.0
MMD3_k127_909897_4 DsrE/DsrF-like family K07235 - - 0.0000000000000000000000000000000000000000000000003641 177.0
MMD3_k127_909897_5 DsrC like protein K11179 - - 0.00000000000000000000000000000000000000000000006295 175.0
MMD3_k127_909897_6 - - - - 0.00000000000000000000000000000000000000000001909 180.0
MMD3_k127_909897_7 Cas6 Crispr - - - 0.0000000000000000000000000000000002993 140.0
MMD3_k127_909897_8 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.000000000000000000000000000000001018 136.0
MMD3_k127_909897_9 - - - - 0.0000000000000000005763 89.0
MMD3_k127_915908_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 9.669e-212 669.0
MMD3_k127_915908_1 EamA-like transporter family K15268 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001377 256.0
MMD3_k127_915908_2 PFAM FecR protein - - - 0.00000000000000000000001729 109.0
MMD3_k127_915908_3 Histidine kinase-like ATPase domain - - - 0.000000001038 68.0
MMD3_k127_91839_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 388.0
MMD3_k127_91839_1 Putative aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000002714 234.0
MMD3_k127_91839_2 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000002386 203.0
MMD3_k127_91839_3 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000000000000000009793 203.0
MMD3_k127_91839_4 Ribosomal protein S18 K02963 - - 0.000000000000000000000000000000000002294 139.0
MMD3_k127_91839_5 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.000000000000003214 79.0
MMD3_k127_922750_0 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 415.0
MMD3_k127_922750_1 ABC-2 type transporter K09694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002009 258.0
MMD3_k127_922750_2 hydrolase of the alpha beta superfamily K07018 - - 0.000000000000000000000000000000000000000000000000000000000000000000009913 241.0
MMD3_k127_922750_3 Thioredoxin-like [2Fe-2S] ferredoxin - - - 0.00000000000000000000000005013 107.0
MMD3_k127_922750_4 ABC-2 type transporter K09694 - - 0.000000000001191 70.0
MMD3_k127_927812_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 580.0
MMD3_k127_927812_1 PFAM Short-chain dehydrogenase reductase SDR K00034 - 1.1.1.47 0.00000000000000000000000000000000000000000000000000000000000000004545 224.0
MMD3_k127_929090_0 Protein of unknown function, DUF255 K06888 - - 1.953e-209 665.0
MMD3_k127_929090_1 - - - - 0.000000000000000000000000000000001894 147.0
MMD3_k127_932899_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 3.206e-270 844.0
MMD3_k127_932899_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 2.934e-256 807.0
MMD3_k127_932899_2 Oxidoreductase NAD-binding domain K15511 - 1.14.13.208 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 567.0
MMD3_k127_932899_3 enoyl-CoA hydratase K15513 - 4.1.2.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 448.0
MMD3_k127_932899_4 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000009008 258.0
MMD3_k127_932899_5 helix_turn_helix ASNC type - - - 0.000000000000000000000000000000000004141 143.0
MMD3_k127_937596_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07812 - 1.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 532.0
MMD3_k127_937596_1 Belongs to the peptidase S24 family K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000007725 259.0
MMD3_k127_946484_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 424.0
MMD3_k127_946484_1 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 356.0
MMD3_k127_946484_2 epimerase, PhzC PhzF homolog K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000001378 170.0
MMD3_k127_946484_3 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.00000002226 58.0
MMD3_k127_946759_0 o-acetylhomoserine K01740 - 2.5.1.49 8.152e-213 668.0
MMD3_k127_946759_1 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001623 265.0
MMD3_k127_946759_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000086 188.0
MMD3_k127_946759_3 Universal stress protein family - - - 0.000000000000000000000000000000000000004547 151.0
MMD3_k127_946759_4 Major Facilitator Superfamily K08170 - - 0.0000000000000000000003955 98.0
MMD3_k127_967260_0 Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor K00697 - 2.4.1.15,2.4.1.347 6.03e-322 1013.0
MMD3_k127_967260_1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.0000000000000000000000000000000000000000000000000000000009928 203.0
MMD3_k127_967260_2 Trehalose-phosphatase K01087 - 3.1.3.12 0.000000003694 61.0
MMD3_k127_987787_0 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001506 283.0
MMD3_k127_987787_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000026 210.0
MMD3_k127_987787_2 Outer membrane lipoprotein LolB - - - 0.000000000000000000000000000008233 132.0
MMD3_k127_987787_3 - - - - 0.0004293 44.0
MMD3_k127_989172_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07788,K07789 - - 0.0 1530.0
MMD3_k127_989172_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K07789 - - 0.0 1441.0
MMD3_k127_989172_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.00000000000000000000000000000000002149 138.0
MMD3_k127_99148_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.571e-310 964.0
MMD3_k127_99148_1 COG0643 Chemotaxis protein histidine kinase and related kinases K02487,K06596 - - 3.496e-220 701.0
MMD3_k127_99148_2 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 577.0
MMD3_k127_99148_3 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 495.0
MMD3_k127_99148_4 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 293.0
MMD3_k127_99148_5 Belongs to the UPF0301 (AlgH) family K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004007 268.0
MMD3_k127_99148_6 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000001047 176.0
MMD3_k127_99148_7 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 GO:0000966,GO:0000967,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.000000000000004405 83.0
MMD3_k127_992901_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520,K04108 - 1.2.5.3,1.3.7.9 0.0 1212.0
MMD3_k127_992901_1 benzoate-CoA ligase K04105 - 6.2.1.25,6.2.1.27 6.131e-218 689.0
MMD3_k127_992901_2 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K04109,K11178 - 1.17.1.4,1.3.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 386.0
MMD3_k127_992901_3 aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518,K04107 - 1.2.5.3,1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000992 252.0
MMD3_k127_992901_4 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000001138 187.0
MMD3_k127_998070_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.429e-228 722.0
MMD3_k127_998070_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 338.0
MMD3_k127_998070_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000001379 232.0
MMD3_k127_998070_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000000000000004338 206.0
MMD3_k127_998070_4 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000003519 143.0
MMD3_k127_998637_0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 1.74e-204 652.0
MMD3_k127_998637_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07538 - 1.1.1.368 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 438.0
MMD3_k127_998637_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 418.0
MMD3_k127_998637_3 Rubrerythrin - - - 0.0000000000000000000000000000000001496 145.0