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Overview

ID MAG02923
Name PJD3_bin.10
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Desulfobacterota_C
Class Deferrisomatia
Order Deferrisomatales
Family JARGFW01
Genus JARGFW01
Species
Assembly information
Completeness (%) 66.51
Contamination (%) 0.85
GC content (%) 68.0
N50 (bp) 2,814
Genome size (bp) 2,406,786

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2486

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_1012172_0 PFAM Multi antimicrobial extrusion protein MatE K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 533.0
PJD3_k127_101496_0 Domain of unknown function (DUF2088) - - - 1.294e-208 655.0
PJD3_k127_101496_1 PFAM peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 548.0
PJD3_k127_101496_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 374.0
PJD3_k127_101496_3 PFAM Alpha beta hydrolase K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 333.0
PJD3_k127_101496_5 DnaJ molecular chaperone homology domain K03686,K05516 - - 0.000000000000000000000000008483 111.0
PJD3_k127_101496_6 Tetratricopeptide repeat - - - 0.000000000001642 75.0
PJD3_k127_1049640_0 COG1283 Na phosphate symporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008361 490.0
PJD3_k127_1049640_1 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 391.0
PJD3_k127_1049640_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004498 316.0
PJD3_k127_1061834_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1159.0
PJD3_k127_1062005_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 1.103e-249 781.0
PJD3_k127_1079539_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600,K00605,K18847 GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0032259,GO:0032991,GO:0042133,GO:0042135,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204 2.1.2.1,2.1.2.10,2.2.1.8 0.0 1130.0
PJD3_k127_1079539_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 2.752e-227 712.0
PJD3_k127_1079539_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 576.0
PJD3_k127_1079539_3 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002934 338.0
PJD3_k127_1079539_4 tRNA thio-modification K03151 GO:0000049,GO:0002937,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0017144,GO:0018130,GO:0019438,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0042364,GO:0042723,GO:0042724,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.8.1.4 0.000000000000000000000000000000000000000000000000000000000001222 216.0
PJD3_k127_1079539_5 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000000007833 177.0
PJD3_k127_1079539_6 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000002234 155.0
PJD3_k127_108187_0 PFAM 2-nitropropane dioxygenase NPD K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000004913 206.0
PJD3_k127_108187_3 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000002363 68.0
PJD3_k127_1103662_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 323.0
PJD3_k127_1115610_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006076 357.0
PJD3_k127_1115610_1 PFAM Cyclic nucleotide-binding K01420,K21563 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 318.0
PJD3_k127_1115610_2 PFAM metal-dependent phosphohydrolase HD sub - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005672 261.0
PJD3_k127_1115610_3 - - - - 0.0000000000000000000000004071 105.0
PJD3_k127_1115637_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 424.0
PJD3_k127_1115637_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 334.0
PJD3_k127_1128744_0 AMP-binding enzyme K12508 - 6.2.1.34 1.213e-235 743.0
PJD3_k127_1128744_1 Tripartite ATP-independent periplasmic transporter, DctM component K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 547.0
PJD3_k127_1128744_2 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 330.0
PJD3_k127_1128744_3 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000000000000009051 187.0
PJD3_k127_1128744_4 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.000000000000000000000000000000000008423 143.0
PJD3_k127_1132775_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008671 565.0
PJD3_k127_1132775_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000005915 245.0
PJD3_k127_1143647_0 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 470.0
PJD3_k127_1143647_1 Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004153 401.0
PJD3_k127_1143647_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000005097 203.0
PJD3_k127_1143891_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 505.0
PJD3_k127_1143891_1 Belongs to the EPSP synthase family. MurA subfamily K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 385.0
PJD3_k127_1143891_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 333.0
PJD3_k127_1143891_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 329.0
PJD3_k127_1143891_4 50S ribosomal protein L31 K02909 - - 0.0000000000000000001971 88.0
PJD3_k127_1150063_0 - - - - 0.0000000000000000000000000000001204 131.0
PJD3_k127_1150063_1 - - - - 0.00000001551 63.0
PJD3_k127_1150063_2 Protein of unknown function (DUF3106) - - - 0.00000004449 59.0
PJD3_k127_1153963_0 PFAM UDP-glucose GDP-mannose dehydrogenase K02474,K13015 - 1.1.1.136 3.571e-268 830.0
PJD3_k127_1153963_1 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004415 451.0
PJD3_k127_1163088_0 Amidohydrolase family K15358 - 3.5.2.18 2.555e-213 668.0
PJD3_k127_1163088_1 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K20447 - 1.17.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005016 537.0
PJD3_k127_1163088_2 4fe-4S ferredoxin, iron-sulfur binding domain protein K20449 - 1.3.7.1 0.000000000000000000000000008014 113.0
PJD3_k127_1171014_0 histidine kinase HAMP region domain protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 311.0
PJD3_k127_1171014_1 histidine kinase HAMP region domain protein K03406 - - 0.000000000000000000009366 96.0
PJD3_k127_11731_0 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006658 282.0
PJD3_k127_11731_1 PFAM Roadblock LC7 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000009355 231.0
PJD3_k127_11731_2 response regulator K07657 - - 0.000000000000000000000000000000000000000004687 157.0
PJD3_k127_1174259_0 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000001334 167.0
PJD3_k127_1174259_1 PBS lyase HEAT-like repeat - - - 0.0000006387 59.0
PJD3_k127_1184572_0 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006524 359.0
PJD3_k127_1184572_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000004797 171.0
PJD3_k127_1184572_2 PFAM sigma-54 factor interaction domain-containing protein K02584 - - 0.000003138 50.0
PJD3_k127_1185199_0 NUDIX domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003089 251.0
PJD3_k127_1185199_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000001342 240.0
PJD3_k127_1185199_2 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.00000000000000000000000000000000000000001837 154.0
PJD3_k127_1188450_0 Belongs to the CinA family K03742,K03743 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 3.5.1.42 0.00000000000000000000000000000000000000000000000002742 183.0
PJD3_k127_1188450_1 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000009521 164.0
PJD3_k127_1188450_2 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016021,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030258,GO:0031224,GO:0031226,GO:0032026,GO:0042221,GO:0042577,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046839,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901576 3.1.3.27 0.000000000000000000000000000000000000002318 153.0
PJD3_k127_1188450_3 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000006711 107.0
PJD3_k127_1188450_4 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000008991 99.0
PJD3_k127_1201281_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K06281 - 1.12.99.6 6.06e-317 976.0
PJD3_k127_1201281_1 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 439.0
PJD3_k127_1201281_2 Ni Fe-hydrogenase, b-type cytochrome subunit K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 315.0
PJD3_k127_1201281_3 PFAM peptidase M52 hydrogen uptake protein K03605 - - 0.00000000000000000000001327 106.0
PJD3_k127_1204225_0 lytic transglycosylase activity K08309 - - 0.00000000000000000000000000194 123.0
PJD3_k127_1212374_0 Belongs to the HypD family K04654 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 476.0
PJD3_k127_1212374_1 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 432.0
PJD3_k127_1212374_2 Belongs to the bacterial histone-like protein family K05788 - - 0.0000000000000000000000000000001682 125.0
PJD3_k127_1212374_3 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.00000000000000000000001147 107.0
PJD3_k127_1212374_4 Bacterial regulatory protein, Fis family - - - 0.0005679 45.0
PJD3_k127_1216730_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 420.0
PJD3_k127_1216730_2 phosphate symporter K14683 - - 0.00000000000000000000000000000000000000000000000000000000000000000586 229.0
PJD3_k127_1222687_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 483.0
PJD3_k127_1222687_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.00000000000000000000000000000000000000000005003 161.0
PJD3_k127_1223202_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1159.0
PJD3_k127_1223202_1 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009374 296.0
PJD3_k127_1223202_2 PFAM PfkB domain protein K00847,K00852 - 2.7.1.15,2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000008973 264.0
PJD3_k127_1223202_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000001459 206.0
PJD3_k127_1223202_4 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000000874 156.0
PJD3_k127_1224655_0 PFAM isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 305.0
PJD3_k127_1224655_1 PFAM isocitrate isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009941 294.0
PJD3_k127_1224655_2 Xylose isomerase-like TIM barrel - - - 0.000000000004794 68.0
PJD3_k127_1232278_0 PFAM D-galactarate dehydratase Altronate hydrolase, C terminus K16850 - 4.2.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001878 407.0
PJD3_k127_1232278_1 D-galactarate dehydratase Altronate hydrolase K01685,K16850 - 4.2.1.7 0.0000000000000000002604 92.0
PJD3_k127_1234835_0 CheR methyltransferase, SAM binding domain K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000002908 242.0
PJD3_k127_1234835_1 PFAM CheW domain protein K03408 - - 0.00000000000000000000000000000000000000000000000000000000000000002587 226.0
PJD3_k127_1234835_2 PFAM CheC domain protein K03409 - - 0.000000000000000000000000000000000000000000000000000000000001542 213.0
PJD3_k127_1235786_0 Pilus assembly protein K02461,K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 344.0
PJD3_k127_1235786_1 Type II secretion system (T2SS), protein M K02462 - - 0.00000000000000000000000000000000000000000000000000000000000000002711 227.0
PJD3_k127_1240832_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 8.538e-204 642.0
PJD3_k127_1240832_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000009543 84.0
PJD3_k127_1253647_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.0 1323.0
PJD3_k127_1253647_1 PFAM Type II secretion system protein E K02669 - - 1.083e-204 644.0
PJD3_k127_1253647_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 343.0
PJD3_k127_1253647_3 Mut7-C ubiquitin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001022 279.0
PJD3_k127_1253647_4 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000001034 228.0
PJD3_k127_1253647_5 - - - - 0.00000000000000000000000000000000000000001815 156.0
PJD3_k127_1253647_6 Ankyrin repeat K06867 - - 0.0000000000000004694 87.0
PJD3_k127_1257041_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 493.0
PJD3_k127_1257041_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000001214 162.0
PJD3_k127_1257041_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000002771 145.0
PJD3_k127_1257041_3 LysR substrate binding domain - - - 0.000000000001365 70.0
PJD3_k127_1267452_2 WD40-like Beta Propeller Repeat - - - 0.00004395 54.0
PJD3_k127_1269414_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 1.2e-202 639.0
PJD3_k127_1269414_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 338.0
PJD3_k127_1273722_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 9.411e-213 670.0
PJD3_k127_1273722_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 485.0
PJD3_k127_1273722_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000001469 188.0
PJD3_k127_1273722_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000000000000000000000000000959 150.0
PJD3_k127_1273722_4 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria - - - 0.0000000000000000000000000000000000001464 150.0
PJD3_k127_1273722_5 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000006208 132.0
PJD3_k127_1297595_0 TIGRFAM TRAP transporter solute receptor, TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000826 466.0
PJD3_k127_1297595_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000001001 117.0
PJD3_k127_1297595_2 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 0.0001663 48.0
PJD3_k127_1299414_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 GO:0003674,GO:0003824,GO:0003866,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046417,GO:0071704,GO:1901576 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002253 579.0
PJD3_k127_1299414_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 388.0
PJD3_k127_1299414_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 302.0
PJD3_k127_1299414_3 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000002438 249.0
PJD3_k127_1323207_0 PFAM von Willebrand factor type A domain K07114 - - 0.0000000000000000000000000000000000000000005249 173.0
PJD3_k127_1323207_1 Oxygen tolerance - - - 0.0000000000000000000000000000000001575 146.0
PJD3_k127_1325882_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K07138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008761 513.0
PJD3_k127_1325882_1 Large family of predicted nucleotide-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 391.0
PJD3_k127_1325882_2 PFAM Transcription factor CarD K07736 - - 0.0000000000000000000000000000000000000000000000000000000000000001047 225.0
PJD3_k127_1325882_3 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000229 149.0
PJD3_k127_1325882_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0000166,GO:0000287,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016020,GO:0016114,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0032787,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044464,GO:0046490,GO:0046872,GO:0046914,GO:0050518,GO:0051483,GO:0051484,GO:0070567,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901576 2.7.7.60 0.00000000000000000000001144 109.0
PJD3_k127_1331546_0 Sodium:solute symporter family K14393 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 572.0
PJD3_k127_1331546_1 Domain of unknown function (DUF4212) - - - 0.00000000000000000000000000003027 118.0
PJD3_k127_1331546_2 PFAM Excinuclease ABC, C subunit domain protein K07461 - - 0.000000000000000000003689 100.0
PJD3_k127_1340988_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 569.0
PJD3_k127_1340988_1 Flavodoxin-like fold K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 310.0
PJD3_k127_1340988_2 MarR family transcriptional K15973 - - 0.0000000000000000000000000000000000000000002542 168.0
PJD3_k127_1369428_0 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 497.0
PJD3_k127_1369428_1 Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000003189 255.0
PJD3_k127_1397060_0 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 4.62e-226 709.0
PJD3_k127_1397060_1 Nitrogenase molybdenum-iron protein alpha chain K02586 - 1.18.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008192 292.0
PJD3_k127_1397060_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000009978 153.0
PJD3_k127_1397060_3 Ammonium Transporter K03320 - - 0.000000000002695 71.0
PJD3_k127_1403158_0 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008307 535.0
PJD3_k127_1403158_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 527.0
PJD3_k127_1403158_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002451 313.0
PJD3_k127_1403158_3 polysaccharide export K01991,K02237 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000006615 83.0
PJD3_k127_141091_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002486 286.0
PJD3_k127_141091_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.000000000000000000000000000000000000000000000000000000000000000000004241 240.0
PJD3_k127_141091_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K14161 - 2.7.7.7 0.0000000000000000000000000000000000000001355 158.0
PJD3_k127_141091_3 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000005274 114.0
PJD3_k127_1429090_0 Branched-chain amino acid transport system / permease component K01997,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000526 370.0
PJD3_k127_1429090_1 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009475 316.0
PJD3_k127_1430647_0 HI0933-like protein K00313 - - 1.183e-208 666.0
PJD3_k127_1430647_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 572.0
PJD3_k127_1430647_2 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000862 267.0
PJD3_k127_1430647_3 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.00000000000000000000000000000000000000000000000000003427 192.0
PJD3_k127_1430647_4 Could be a 3Fe-4S cluster-containing protein K03855 - - 0.00000000000000000000000000000000000005228 144.0
PJD3_k127_1448822_0 Iron-sulfur cluster binding protein K18929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225 403.0
PJD3_k127_1448822_1 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000003372 211.0
PJD3_k127_1452408_0 Circularly permuted ATP-grasp type 2 - - - 1.543e-233 735.0
PJD3_k127_1452408_1 PFAM Bacterial domain of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006868 396.0
PJD3_k127_1452408_2 Bacterial transglutaminase-like N-terminal region - - - 0.0000000000000000000000000000000000000008425 149.0
PJD3_k127_1452408_3 Transglutaminase/protease-like homologues - - - 0.00000000000000000000000000000003845 127.0
PJD3_k127_1452928_0 Histidine kinase K07644 - 2.7.13.3 5.281e-200 641.0
PJD3_k127_1452928_1 radical SAM domain protein K03716 - 4.1.99.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 438.0
PJD3_k127_1452928_2 PFAM response regulator receiver K07665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 379.0
PJD3_k127_1452928_3 chromosome segregation K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000001044 239.0
PJD3_k127_1452928_4 PFAM GGDEF domain containing protein - - - 0.000000000000000000001885 104.0
PJD3_k127_1452928_5 cell wall biogenesis - - - 0.00000002132 58.0
PJD3_k127_1453111_0 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 361.0
PJD3_k127_1453111_1 HlyD family secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003597 316.0
PJD3_k127_1456438_0 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K15893 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 352.0
PJD3_k127_1456438_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.00000000000000000000000000000003222 134.0
PJD3_k127_1456438_2 Cache domain K10125 - 2.7.13.3 0.00001516 49.0
PJD3_k127_146310_0 Peptidase M16C associated K06972 - - 6.976e-241 760.0
PJD3_k127_1463478_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 469.0
PJD3_k127_1463478_1 TIGRFAM Tyrosine recombinase XerD K03733,K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003333 264.0
PJD3_k127_1463478_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000001703 160.0
PJD3_k127_1465677_0 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006061 274.0
PJD3_k127_1465677_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000148 267.0
PJD3_k127_1477546_0 transposition - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 447.0
PJD3_k127_1477546_1 Uncharacterized protein K02A2.6-like - - - 0.0001451 54.0
PJD3_k127_1479182_0 - - - - 0.00000000000000000000000000000005072 137.0
PJD3_k127_1479182_1 Diguanylate cyclase - - - 0.0000000000000000000000000000004504 135.0
PJD3_k127_1479182_2 protein histidine kinase activity K07636 - 2.7.13.3 0.000828 50.0
PJD3_k127_1496095_0 conserved protein UCP016719 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005605 566.0
PJD3_k127_1496095_1 Mur ligase, middle domain K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007928 573.0
PJD3_k127_1496095_2 PFAM Uncharacterised BCR, COG1649 - - - 0.0000000000000000000000004808 122.0
PJD3_k127_1498528_0 PFAM Histone deacetylase K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 591.0
PJD3_k127_1498528_1 PFAM Hydantoinase oxoprolinase - - - 0.0000001568 54.0
PJD3_k127_1509175_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004852 593.0
PJD3_k127_1509175_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000001098 199.0
PJD3_k127_1509175_2 Biopolymer transport protein ExbD/TolR K03559 - - 0.00000000000000000000000000000000000000000000001286 180.0
PJD3_k127_1509175_4 PFAM PfkB domain protein K00847,K00852 - 2.7.1.15,2.7.1.4 0.0000000000000006816 78.0
PJD3_k127_151051_0 Carboxysome Shell Carbonic Anhydrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002917 537.0
PJD3_k127_151051_1 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005486 420.0
PJD3_k127_151051_2 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000002524 221.0
PJD3_k127_1511048_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007169 283.0
PJD3_k127_1511048_1 - - - - 0.000000000000001939 79.0
PJD3_k127_1517648_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1273.0
PJD3_k127_1517648_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 5.385e-231 725.0
PJD3_k127_1517648_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 5.108e-220 687.0
PJD3_k127_1517648_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003237 474.0
PJD3_k127_1517648_4 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 451.0
PJD3_k127_1517648_5 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 342.0
PJD3_k127_1517648_6 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 306.0
PJD3_k127_1517648_7 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000000000003051 145.0
PJD3_k127_1517648_8 AAA domain - - - 0.00000000000000000000000000001201 124.0
PJD3_k127_1517648_9 Uncharacterized conserved protein (DUF2196) - - - 0.0000000000000000008024 97.0
PJD3_k127_1523567_0 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002782 355.0
PJD3_k127_1523567_1 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000005087 183.0
PJD3_k127_1523567_2 lactate metabolic process - - - 0.000000000000000000000000000000000000000000000000111 178.0
PJD3_k127_1526579_1 polysaccharide biosynthetic process - - - 0.000000000000000000000003167 117.0
PJD3_k127_1528642_0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain K04940 - 1.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002402 342.0
PJD3_k127_1528642_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000005448 274.0
PJD3_k127_1528642_2 PFAM Extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000001174 242.0
PJD3_k127_153051_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 5.372e-222 692.0
PJD3_k127_153051_1 PFAM isocitrate isopropylmalate dehydrogenase K00031 - 1.1.1.42 5.779e-219 684.0
PJD3_k127_153051_2 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000002206 235.0
PJD3_k127_1531415_0 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005307 254.0
PJD3_k127_1531415_1 DNA polymerase III chi subunit, HolC K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000817 175.0
PJD3_k127_1531415_2 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000001441 151.0
PJD3_k127_1536058_0 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000000000000000000002245 172.0
PJD3_k127_1536058_1 Uncharacterized ACR, COG1993 K09137 - - 0.000000000000000000000000000000000000000005481 161.0
PJD3_k127_1536058_2 penicillin-binding protein - - - 0.000000000000000000000000000000008191 131.0
PJD3_k127_1536058_3 PFAM Class I peptide chain release factor K15034 - - 0.00000000000000000000000002068 113.0
PJD3_k127_1536058_4 Glycosyl transferase family group 2 - - - 0.000000000000000002422 88.0
PJD3_k127_1536058_6 PFAM translation initiation factor SUI1 K03113 - - 0.00000000338 69.0
PJD3_k127_1537390_0 helicase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 344.0
PJD3_k127_1549425_0 Sucrose-6F-phosphate phosphohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 426.0
PJD3_k127_1549425_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007083 265.0
PJD3_k127_1549425_2 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000004187 160.0
PJD3_k127_155316_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008727 390.0
PJD3_k127_155316_1 Phosphoserine phosphatase - - - 0.000000000000000000000000000000000000000000001505 167.0
PJD3_k127_1556891_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 1.078e-217 682.0
PJD3_k127_1556891_1 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 507.0
PJD3_k127_1556891_2 PFAM NAD-dependent epimerase dehydratase K01784,K02473 - 5.1.3.2,5.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006228 486.0
PJD3_k127_1556891_3 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K00971 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 349.0
PJD3_k127_1556891_4 Bacterial transferase hexapeptide (six repeats) K02617,K08279 - - 0.00000000000000000000000000000000000000000001409 169.0
PJD3_k127_1564306_0 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 467.0
PJD3_k127_1564306_1 Deoxynucleoside kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 356.0
PJD3_k127_1569336_0 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000000000003323 203.0
PJD3_k127_1569336_1 Phospholipase A1 K01058 - 3.1.1.32,3.1.1.4 0.0000000000000000000000000000000000000001678 154.0
PJD3_k127_1569336_2 Sodium/calcium exchanger protein K07301 - - 0.0000000000000000000000001509 108.0
PJD3_k127_1569336_3 CoA binding domain - - - 0.00000000000000000007179 91.0
PJD3_k127_1570965_0 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006109,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009894,GO:0009987,GO:0010675,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0031323,GO:0031329,GO:0032787,GO:0034248,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046538,GO:0046700,GO:0046939,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0055086,GO:0060255,GO:0062012,GO:0065007,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902031 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009566 335.0
PJD3_k127_1570965_1 Metallo-beta-lactamase superfamily K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000977 294.0
PJD3_k127_1570965_2 homoserine transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000001984 181.0
PJD3_k127_1570965_3 AI-2E family transporter K11744 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0009372,GO:0009987,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0044764,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071944 - 0.00000000000000000000000000000000000000000000003272 172.0
PJD3_k127_1570965_4 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000004071 105.0
PJD3_k127_1583655_0 Represses a number of genes involved in the response to DNA damage (SOS response) K01356,K03503 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001957 287.0
PJD3_k127_1583655_2 Capsule assembly protein Wzi - - - 0.00000000000000000000000000000000001446 140.0
PJD3_k127_1589638_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 467.0
PJD3_k127_1589638_1 Periplasmic binding protein K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005273 396.0
PJD3_k127_1599209_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 315.0
PJD3_k127_1599209_1 PFAM integrase family protein - - - 0.0000000000000000000000000000000000000000000005393 173.0
PJD3_k127_1599209_2 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000004007 130.0
PJD3_k127_1599209_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000000000003903 94.0
PJD3_k127_1605823_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 374.0
PJD3_k127_1605823_1 May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process K07699 - - 0.000000001557 69.0
PJD3_k127_1605843_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 444.0
PJD3_k127_1605843_2 - - - - 0.0000007485 55.0
PJD3_k127_1613203_0 Histidine kinase A domain protein K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 554.0
PJD3_k127_1613203_1 two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005724 383.0
PJD3_k127_1613203_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000001295 126.0
PJD3_k127_1613589_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 507.0
PJD3_k127_1613589_1 SMART Nucleotide binding protein, PINc K07175 - - 0.0000000000000000000000000001487 114.0
PJD3_k127_1613589_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000645 106.0
PJD3_k127_1618598_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008471 535.0
PJD3_k127_1622775_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000422 508.0
PJD3_k127_1622775_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000004103 243.0
PJD3_k127_1622775_2 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000003288 171.0
PJD3_k127_1622775_3 protein family UPF0079, ATPase K06925 - - 0.000000000000000000000000000000005545 130.0
PJD3_k127_1637221_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 512.0
PJD3_k127_1637221_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 373.0
PJD3_k127_1637221_2 thiolester hydrolase activity - - - 0.0000000000000000000000000000000000000000002439 163.0
PJD3_k127_1637221_3 COG1448 Aspartate tyrosine aromatic aminotransferase K00832 - 2.6.1.57 0.000000000000000000000000000001072 123.0
PJD3_k127_1637221_4 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000001118 78.0
PJD3_k127_1637221_5 Uncharacterized protein conserved in archaea (DUF2124) - - - 0.00003261 50.0
PJD3_k127_1652344_0 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 1.607e-222 697.0
PJD3_k127_1652344_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000825 529.0
PJD3_k127_1652344_2 PFAM Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 520.0
PJD3_k127_1652344_3 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001752 466.0
PJD3_k127_1652344_4 PFAM ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000492 330.0
PJD3_k127_1652344_5 Predicted membrane protein (DUF2318) - - - 0.0000000000000000000000000000000000000000000000000000000000003859 217.0
PJD3_k127_1652344_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.0000000000000000000000000000000000000404 147.0
PJD3_k127_1652344_7 Heavy-metal-associated domain - - - 0.0000000000000000001865 94.0
PJD3_k127_1663822_0 DEAD DEAH box helicase K06877 - - 4.176e-282 879.0
PJD3_k127_1671656_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 423.0
PJD3_k127_1671656_1 membrane protein, hemolysin III homolog K11068 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000002423 192.0
PJD3_k127_1677058_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 438.0
PJD3_k127_1677058_1 PIN domain K07064 - - 0.00000000000000000000000000000001559 134.0
PJD3_k127_1677058_2 positive regulation of growth - - - 0.0000000000006195 81.0
PJD3_k127_1679289_0 DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 390.0
PJD3_k127_1679289_1 Binds directly to 16S ribosomal RNA K02968 - - 0.0000000000000000000000000000000008238 132.0
PJD3_k127_1681563_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006939 567.0
PJD3_k127_1681563_1 - - - - 0.000000000000000000002493 99.0
PJD3_k127_168537_0 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 393.0
PJD3_k127_168537_1 Fibronectin type 3 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002534 265.0
PJD3_k127_168537_2 Nudix hydrolase - - - 0.000000000000000000000000000000000000000000000000001983 188.0
PJD3_k127_168537_3 Belongs to the flagella basal body rod proteins family K02392 - - 0.000000008204 57.0
PJD3_k127_1686093_0 DNA recombination protein, rmuC K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 412.0
PJD3_k127_1686093_1 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 295.0
PJD3_k127_1686093_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002676 284.0
PJD3_k127_1686093_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000006713 203.0
PJD3_k127_168610_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 1.347e-241 757.0
PJD3_k127_168610_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 6.632e-227 719.0
PJD3_k127_168610_2 cysteine-tRNA ligase activity - - - 0.000000000000000000000000000000000000000000000001409 179.0
PJD3_k127_168610_3 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000001369 183.0
PJD3_k127_168610_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000254 140.0
PJD3_k127_168610_5 Response regulator, receiver K03413 - - 0.0000003193 53.0
PJD3_k127_1701967_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 7.871e-244 762.0
PJD3_k127_1701967_1 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 579.0
PJD3_k127_1701967_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 456.0
PJD3_k127_1701967_3 TIGRFAM preprotein translocase, YajC subunit K03210 - - 0.000000000002701 67.0
PJD3_k127_1702006_0 PFAM Metal-dependent hydrolase HDOD - - - 0.0000000000000000000000000000000000000000000000000000000000000000002698 240.0
PJD3_k127_1702006_1 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000002619 153.0
PJD3_k127_1706588_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1257.0
PJD3_k127_1706588_1 SMART helicase c2 K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004377 392.0
PJD3_k127_1706588_2 PFAM OmpA MotB domain protein K02557 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 366.0
PJD3_k127_1706588_3 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000004562 198.0
PJD3_k127_1706588_4 PFAM MotA TolQ ExbB proton channel K02556 - - 0.000000000000000000000000000000000000000000001784 165.0
PJD3_k127_1706588_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000007015 156.0
PJD3_k127_1712579_0 Glycosyl transferase family 21 - - - 1.202e-261 820.0
PJD3_k127_1724653_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 6.637e-313 970.0
PJD3_k127_1724653_1 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 411.0
PJD3_k127_1724653_2 Belongs to the FPP GGPP synthase family K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 368.0
PJD3_k127_1724653_3 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000749 347.0
PJD3_k127_1724653_4 Tetrapyrrole (Corrin/Porphyrin) Methylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 314.0
PJD3_k127_1724653_5 Peptidase family U32 - - - 0.000000000000000000000005553 106.0
PJD3_k127_1724653_6 PFAM Peptidase M23 - - - 0.0000000001803 62.0
PJD3_k127_1724653_7 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.00000009817 57.0
PJD3_k127_1726985_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 493.0
PJD3_k127_1726985_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.0000000000000000000000000000000000000000000000000000000006216 209.0
PJD3_k127_1726985_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000002605 120.0
PJD3_k127_1739965_0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 488.0
PJD3_k127_1747027_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 3.314e-198 630.0
PJD3_k127_1747027_1 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000002278 135.0
PJD3_k127_1758204_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007507 268.0
PJD3_k127_1758204_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000008649 186.0
PJD3_k127_1762503_0 CoA binding domain - - - 1.936e-194 617.0
PJD3_k127_1762503_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 303.0
PJD3_k127_1762503_2 - - - - 0.0000000173 62.0
PJD3_k127_1766529_0 PFAM homoserine dehydrogenase K00003 - 1.1.1.3 1.147e-203 647.0
PJD3_k127_1766529_1 PFAM Aminotransferase class I and II K10206,K14261 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 355.0
PJD3_k127_1766529_2 Proposed homoserine kinase K15635 - 5.4.2.12 0.000000000000000008566 88.0
PJD3_k127_1804247_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 311.0
PJD3_k127_1804247_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000001854 211.0
PJD3_k127_1804247_2 Flavodoxin domain - - - 0.000000000000000009585 88.0
PJD3_k127_1804694_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 309.0
PJD3_k127_1804694_1 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001885 253.0
PJD3_k127_1804694_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000000000000004829 128.0
PJD3_k127_1807924_0 PFAM binding-protein-dependent transport systems inner membrane component K02033,K12369,K13890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 468.0
PJD3_k127_1807924_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 389.0
PJD3_k127_1807924_2 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.000000000000000000000000000000003418 142.0
PJD3_k127_1839769_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 411.0
PJD3_k127_1839769_1 Ferritin-like domain K02217 - 1.16.3.2 0.0000000000000000000000000000000000000000000000000000000000000000001593 233.0
PJD3_k127_1839769_2 PFAM Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000002652 113.0
PJD3_k127_1841291_0 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000001443 196.0
PJD3_k127_1841291_1 - - - - 0.000000000000000000000000000000000000147 147.0
PJD3_k127_1841291_2 radical SAM domain protein - - - 0.000000000000000000008116 97.0
PJD3_k127_1850562_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.638e-258 800.0
PJD3_k127_1850562_1 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 357.0
PJD3_k127_1857826_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 424.0
PJD3_k127_1857826_1 Penicillin-binding protein 1A K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000008473 205.0
PJD3_k127_186103_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 4.03e-321 990.0
PJD3_k127_186103_1 Cytochrome c554 and c-prime K10535 - 1.7.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005452 426.0
PJD3_k127_186103_2 Sensor histidine kinase, HAMP and PAS domain-containing - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 351.0
PJD3_k127_186103_3 SMART Chromosomal replication initiator DnaA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 352.0
PJD3_k127_186103_4 PDZ DHR GLGF domain protein K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003498 306.0
PJD3_k127_186103_5 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000000001266 201.0
PJD3_k127_1868743_0 extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004469 440.0
PJD3_k127_1868743_1 'PFAM Tripartite ATP-independent periplasmic - - - 0.000000000000000000000000000000000008642 146.0
PJD3_k127_1868743_2 Universal stress protein - - - 0.0000000000000000000000004894 111.0
PJD3_k127_1868743_3 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000006146 59.0
PJD3_k127_1882143_0 Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 338.0
PJD3_k127_1896331_0 PFAM DAHP synthetase I KDSA K01626,K03856,K04516,K13853 - 2.5.1.54,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 402.0
PJD3_k127_1896331_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 370.0
PJD3_k127_1896331_2 DnaJ-class molecular chaperone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005522 268.0
PJD3_k127_1896331_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000004151 217.0
PJD3_k127_1896331_4 - - - - 0.00000000000000000000001191 106.0
PJD3_k127_1896331_5 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000006976 83.0
PJD3_k127_1900301_0 denitrification pathway - - - 1.889e-287 892.0
PJD3_k127_1900301_1 phosphoribosyltransferase - - - 0.00000000000000000000000000002366 120.0
PJD3_k127_1904408_0 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 9.97e-257 802.0
PJD3_k127_1904408_1 ribonuclease Rne Rng family K08300,K08301 - 3.1.26.12 3.548e-205 670.0
PJD3_k127_1904408_2 Histidyl-tRNA synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001613 269.0
PJD3_k127_1905726_0 Binding-protein-dependent transport system inner membrane component K09970 - - 1.205e-195 616.0
PJD3_k127_1905726_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008727 569.0
PJD3_k127_1905726_2 Bacterial periplasmic substrate-binding proteins K09969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 551.0
PJD3_k127_1905726_3 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K09971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 533.0
PJD3_k127_1905726_4 Membrane - - - 0.00000000000000000000000000000000000000000000000000000005915 196.0
PJD3_k127_1913985_0 Glycerol-3-phosphate dehydrogenase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 310.0
PJD3_k127_1913985_1 translation release factor activity K03265 - - 0.00000000000000000000000000000000000000000000000000000003378 201.0
PJD3_k127_1934546_0 PQQ-like domain K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 344.0
PJD3_k127_1934546_1 Tellurite resistance protein TerB K05801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001284 261.0
PJD3_k127_1934546_2 SMART phosphoesterase PHP domain protein - - - 0.000000000000000000002547 94.0
PJD3_k127_1939527_0 Shikimate dehydrogenase substrate binding K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000003691 212.0
PJD3_k127_1939527_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000001406 207.0
PJD3_k127_1939527_2 geranylgeranyl reductase - - - 0.00000000000000000000005591 112.0
PJD3_k127_1939527_3 SMART Chromosomal replication initiator DnaA domain - - - 0.000000000000623 73.0
PJD3_k127_1941210_0 PFAM Thiamine pyrophosphate K00170,K00187 - 1.2.7.1,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008853 480.0
PJD3_k127_1941210_1 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00169 - 1.2.7.1 0.0000000000000000000000000000000003487 132.0
PJD3_k127_1941210_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000009256 63.0
PJD3_k127_1946116_0 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 326.0
PJD3_k127_1946116_1 PFAM lipolytic protein G-D-S-L family K01073 - 3.1.2.20 0.00000000000000000000000000003554 126.0
PJD3_k127_1961304_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 391.0
PJD3_k127_1961304_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 327.0
PJD3_k127_1961304_2 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000005529 105.0
PJD3_k127_1961304_3 actin binding - - - 0.00000000000000000001176 92.0
PJD3_k127_1973657_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 6.229e-298 923.0
PJD3_k127_1973657_1 Endoribonuclease L-PSP - - - 0.000000000001529 78.0
PJD3_k127_1975382_0 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 335.0
PJD3_k127_1975382_1 bacterial-type flagellum-dependent cell motility K01317 - 3.4.21.10 0.0000000000000000000000000000000000000000000000000003181 193.0
PJD3_k127_1975382_2 ATPase associated with various cellular activities K03924 - - 0.00000000000000000000000000001725 120.0
PJD3_k127_1976918_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 583.0
PJD3_k127_1976918_1 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000000006527 167.0
PJD3_k127_1982023_0 PFAM AAA ATPase central domain protein K06027 - 3.6.4.6 2.094e-268 833.0
PJD3_k127_1982023_2 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 488.0
PJD3_k127_1982023_3 PFAM Silent information regulator protein Sir2 K12410 - - 0.0000000000000000000000000000000000000000000000000000000001673 207.0
PJD3_k127_1982023_5 Protein of unknown function (DUF1257) - - - 0.00000000003666 63.0
PJD3_k127_1991498_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 5.974e-253 792.0
PJD3_k127_1991498_1 nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000007131 221.0
PJD3_k127_1991570_0 all-trans-retinol 13,14-reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 569.0
PJD3_k127_1991570_1 Pyridine nucleotide-disulfide oxidoreductase K03885 - 1.6.99.3 0.00000000000932 78.0
PJD3_k127_2010813_0 Transcriptional regulator, LysR - - - 0.0000000000000000000000000000000000000000000001313 173.0
PJD3_k127_2010813_1 4Fe-4S single cluster domain of Ferredoxin I - - - 0.000000000000000000000007601 102.0
PJD3_k127_2010813_2 Major facilitator superfamily K06902 - - 0.0000000000000001153 81.0
PJD3_k127_2010813_3 - - - - 0.00000003003 63.0
PJD3_k127_2024128_0 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 511.0
PJD3_k127_2024128_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 351.0
PJD3_k127_2024128_2 PFAM Aminotransferase class I and II K04720 - 4.1.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007882 314.0
PJD3_k127_2024128_3 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000001794 181.0
PJD3_k127_2025911_0 Histidine kinase K02668,K07710 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 413.0
PJD3_k127_2025911_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000001466 134.0
PJD3_k127_2029450_0 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007451 286.0
PJD3_k127_2029450_2 Predicted permease K07089 - - 0.0000008977 53.0
PJD3_k127_2041225_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007294 304.0
PJD3_k127_2041225_1 PFAM response regulator receiver - - - 0.0000000000000000000000000000002192 135.0
PJD3_k127_2041225_2 histidine kinase A domain protein - - - 0.00000000000001902 81.0
PJD3_k127_2068169_0 permease K07089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008099 503.0
PJD3_k127_2068169_1 Cytochrome C biogenesis protein K06196 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 335.0
PJD3_k127_2068169_2 Thioredoxin K03671 - - 0.00000007365 56.0
PJD3_k127_2068206_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000002978 247.0
PJD3_k127_2068206_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000004914 108.0
PJD3_k127_2068206_2 Tetratricopeptide repeat - - - 0.0000000000000001156 85.0
PJD3_k127_2073294_0 Cytochrome C and Quinol oxidase polypeptide I K00404,K15862 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 565.0
PJD3_k127_2073294_1 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 408.0
PJD3_k127_2073294_2 Cytochrome c K00406 - - 0.0000000000001247 76.0
PJD3_k127_2091135_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K14161 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007915 438.0
PJD3_k127_209190_0 Tripartite tricarboxylate transporter TctA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 495.0
PJD3_k127_2144142_0 PFAM 4Fe-4S K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 553.0
PJD3_k127_2144142_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 289.0
PJD3_k127_2144142_2 elongation factor Tu domain 2 protein K06207 - - 0.0000000000000000000000000000000000000000000000000000000000001748 214.0
PJD3_k127_2144142_3 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000382 55.0
PJD3_k127_2149553_0 reverse transcriptase - - - 0.0000000000000000001044 89.0
PJD3_k127_2149553_1 - K07403 - - 0.000000000005551 78.0
PJD3_k127_2170199_0 malic protein domain protein K00027,K00029 - 1.1.1.38,1.1.1.40 3.677e-254 797.0
PJD3_k127_2170199_1 DNA polymerase A domain K02335 - 2.7.7.7 6.821e-198 623.0
PJD3_k127_2195535_0 Efflux ABC transporter permease protein K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 355.0
PJD3_k127_2195535_1 PFAM Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000004918 186.0
PJD3_k127_2201582_0 VWA containing CoxE family protein K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004394 597.0
PJD3_k127_2201582_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 496.0
PJD3_k127_2201582_2 PFAM AAA ATPase central domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 463.0
PJD3_k127_2201582_3 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 310.0
PJD3_k127_2201582_4 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000003803 162.0
PJD3_k127_2201582_5 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000001608 157.0
PJD3_k127_2203438_0 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008566 346.0
PJD3_k127_2203438_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007794 341.0
PJD3_k127_2208910_0 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 484.0
PJD3_k127_2208910_1 gag-polyprotein putative aspartyl protease - - - 0.000000000000000000000005852 117.0
PJD3_k127_2209666_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.907e-230 719.0
PJD3_k127_2209666_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000002946 131.0
PJD3_k127_2219006_0 Type II secretion system K02653 - - 1.187e-203 639.0
PJD3_k127_2219006_1 twitching motility protein K02669 - - 1.368e-195 617.0
PJD3_k127_2219006_2 PFAM Type II secretion system protein E K02652 - - 0.00000000000000000000000000000000000000000003796 162.0
PJD3_k127_2226392_0 PFAM nucleoside recognition domain protein - - - 0.000000000000000000000000000000008927 131.0
PJD3_k127_2226392_1 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000002156 133.0
PJD3_k127_2226392_2 - - - - 0.0000000000004189 71.0
PJD3_k127_2244833_0 Peptidase family M1 domain K01256,K13722 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009746 464.0
PJD3_k127_2244833_1 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 316.0
PJD3_k127_2244833_2 - - - - 0.00000000000000000000000000000000000000000000000005584 185.0
PJD3_k127_2244833_3 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000001793 145.0
PJD3_k127_2244833_4 Belongs to the glutaminase family K01425 - 3.5.1.2 0.000000000000000001406 85.0
PJD3_k127_227241_0 Belongs to the methyltransferase superfamily K07444,K12297 - 2.1.1.173,2.1.1.264 0.000000000000000000000000000000000000000000000000000000000000001515 227.0
PJD3_k127_227241_1 Histidine kinase - - - 0.0000000000000000000000000002526 126.0
PJD3_k127_2273511_0 PFAM transposase, IS4 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002779 414.0
PJD3_k127_2273511_1 COG3335 Transposase and inactivated derivatives K07494 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 377.0
PJD3_k127_2275170_0 Peptidoglycan-synthase activator LpoB K07337 - - 0.00000000000000000000000000000000000000000000000000000000000000000005031 244.0
PJD3_k127_2275170_1 protein conserved in bacteria K09859 - - 0.0000000000000000000000000000000000000000000000000000000000000005618 231.0
PJD3_k127_2275170_2 LPP20 lipoprotein - - - 0.00000000000000000000000000000002357 130.0
PJD3_k127_2276826_0 Alpha amylase catalytic - - - 0.0 1195.0
PJD3_k127_2276826_1 HAD-superfamily hydrolase, subfamily IB, PSPase-like - - - 0.000000005857 58.0
PJD3_k127_2278137_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005069 271.0
PJD3_k127_2293976_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 605.0
PJD3_k127_2303998_0 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784,K12448 - 5.1.3.2,5.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 521.0
PJD3_k127_2303998_1 Protein of unknown function (DUF615) K09889 - - 0.000000000000000000000000001735 122.0
PJD3_k127_2303998_2 NAD dependent epimerase dehydratase family K08678 - 4.1.1.35 0.00000000000000003556 81.0
PJD3_k127_2319735_0 TIGRFAM type IV-A pilus assembly ATPase PilB K02652 - - 4.283e-199 633.0
PJD3_k127_2322311_0 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 392.0
PJD3_k127_2322311_1 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 357.0
PJD3_k127_2322311_2 flagellar biosynthetic protein FliR K02421 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001386 270.0
PJD3_k127_2322311_3 Flagellar biosynthetic protein FliQ K02420,K03227 - - 0.000000000000000000000000008795 112.0
PJD3_k127_2323281_2 - - - - 0.000002886 57.0
PJD3_k127_2336074_0 ABC transporter K06158 - - 5.732e-235 741.0
PJD3_k127_2336074_1 - - - - 0.00000005133 63.0
PJD3_k127_2339798_0 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 297.0
PJD3_k127_2341767_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 445.0
PJD3_k127_2341767_1 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000000000000000000000000000000000000000000000000000003322 205.0
PJD3_k127_2341767_2 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.00000000000000000000000000000000000000000000000000000008915 209.0
PJD3_k127_2341767_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0000000000000000000000000000000000000000000000001706 178.0
PJD3_k127_2341767_4 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.0000000000000000000000000000000001643 135.0
PJD3_k127_2342918_0 TIGRFAM sodium ion-translocating decarboxylase, beta subunit K01572 - 4.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 488.0
PJD3_k127_2342918_1 ligase activity, forming carbon-carbon bonds K00627,K01960 - 2.3.1.12,6.4.1.1 0.00000000000000000000000000000000000000000005361 167.0
PJD3_k127_2343722_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 472.0
PJD3_k127_2343722_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000003868 223.0
PJD3_k127_2343722_4 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.0000000000000000003501 89.0
PJD3_k127_2344138_0 PFAM WD40 domain protein beta Propeller - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 355.0
PJD3_k127_2346679_0 peptidase M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009329 411.0
PJD3_k127_2346679_1 - - - - 0.00000000000000000008734 89.0
PJD3_k127_2346679_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000596 72.0
PJD3_k127_2350539_0 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 9.21e-230 717.0
PJD3_k127_2350539_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00001094 49.0
PJD3_k127_2378504_0 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 441.0
PJD3_k127_2378504_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 365.0
PJD3_k127_2378504_2 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000003321 64.0
PJD3_k127_2384745_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703,K01176 - 2.4.1.21,3.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008178 608.0
PJD3_k127_2384745_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211 452.0
PJD3_k127_2395639_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K06147,K11085 - - 2.716e-217 686.0
PJD3_k127_2395639_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 465.0
PJD3_k127_2395639_2 PFAM glycosyl transferase family 9 K02843,K02849 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007599 460.0
PJD3_k127_2395639_3 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007196 399.0
PJD3_k127_2395639_4 PFAM Glycosyl transferase, group 1 K02844 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 387.0
PJD3_k127_2395639_5 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008713,GO:0008920,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016772,GO:0019200,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046401,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337 333.0
PJD3_k127_2395639_6 Methionine biosynthesis protein MetW - - - 0.00000000000000000004397 99.0
PJD3_k127_2395639_7 YicC domain protein - - - 0.000000000000000008923 83.0
PJD3_k127_2402043_0 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000011 284.0
PJD3_k127_2402043_1 PFAM peptidase M48 Ste24p - - - 0.000000000000000000000000000000000000000000000003467 175.0
PJD3_k127_2402043_2 - - - - 0.00000000000000000000000000000001114 143.0
PJD3_k127_2402043_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000001301 51.0
PJD3_k127_2404698_0 TIGRFAM RarD protein, DMT superfamily transporter K05786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007999 271.0
PJD3_k127_2404698_1 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) K00019 - 1.1.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000006486 242.0
PJD3_k127_2404698_2 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000002462 156.0
PJD3_k127_2409951_0 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005884 519.0
PJD3_k127_2409951_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 286.0
PJD3_k127_2409951_2 Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA K00556 - 2.1.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001812 271.0
PJD3_k127_2409951_3 - - - - 0.00000000000000000000000000000000000002571 152.0
PJD3_k127_2409951_4 lyase activity - - - 0.00000000000000004796 91.0
PJD3_k127_2409951_5 PFAM SH3 type 3 K07184 - - 0.0000001373 56.0
PJD3_k127_2414558_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 604.0
PJD3_k127_2414558_1 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002095 275.0
PJD3_k127_2414558_2 Membrane - - - 0.000000000000000000000000000000000000000000000000000003237 194.0
PJD3_k127_2414558_3 PFAM LemA family K03744 - - 0.0000000000000000000000000000000000000000000000009858 175.0
PJD3_k127_2414606_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 414.0
PJD3_k127_2414606_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004619 391.0
PJD3_k127_2414606_2 PFAM ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 313.0
PJD3_k127_2414606_3 MacB-like periplasmic core domain K02004 - - 0.000000000000008867 78.0
PJD3_k127_241648_0 Subtilase family - - - 0.0000000000000000000000000000000000001625 160.0
PJD3_k127_2419310_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 2.568e-271 840.0
PJD3_k127_2420231_0 Spermidine synthase K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000005826 260.0
PJD3_k127_2420231_1 Nitroreductase family - - - 0.0000000000000000000000000000000000000000000000000000000181 201.0
PJD3_k127_2420880_0 Histidine kinase - - - 1.592e-258 812.0
PJD3_k127_2420880_1 CBS domain containing protein K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 556.0
PJD3_k127_2420880_2 SMART Metal-dependent phosphohydrolase, HD region K07023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 310.0
PJD3_k127_2420880_3 lipoprotein transporter activity K02003 - - 0.000000000000000000000000000000000000000000000000000000000001098 226.0
PJD3_k127_2420880_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000006867 197.0
PJD3_k127_2424917_0 flagellar motor switch protein FliM K02416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 424.0
PJD3_k127_2424917_1 flagellar motor switch protein K02417 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 362.0
PJD3_k127_2425691_0 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 4.614e-212 674.0
PJD3_k127_2425691_1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000002633 148.0
PJD3_k127_2434912_0 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007828 398.0
PJD3_k127_2434912_1 response regulator K02479 - - 0.0000000000000000000000000003059 126.0
PJD3_k127_2434912_2 Putative zinc- or iron-chelating domain - - - 0.0000000000000000008773 94.0
PJD3_k127_244110_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 332.0
PJD3_k127_244110_1 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000003281 195.0
PJD3_k127_244110_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000006245 77.0
PJD3_k127_244110_3 PilZ domain - - - 0.0000000000006031 81.0
PJD3_k127_2441382_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008609 530.0
PJD3_k127_2441382_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 362.0
PJD3_k127_2441382_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000004621 122.0
PJD3_k127_245562_0 Seven times multi-haem cytochrome CxxCH - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 469.0
PJD3_k127_245562_1 Chase2 domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009781 414.0
PJD3_k127_245562_2 PFAM OmpA MotB domain protein - - - 0.0000000000000002021 80.0
PJD3_k127_245562_3 FecR protein - - - 0.00000000002657 69.0
PJD3_k127_2474060_0 extracellular solute-binding protein, family 5 K02035,K15584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 398.0
PJD3_k127_2474060_1 Belongs to the ABC transporter superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 334.0
PJD3_k127_2474060_2 Pfam Binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 313.0
PJD3_k127_2474060_3 nitrogen compound transport K02033,K02034,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007132 261.0
PJD3_k127_2476819_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000001541 225.0
PJD3_k127_247739_0 Required for chromosome condensation and partitioning K03529 - - 8.848e-262 837.0
PJD3_k127_248681_0 Transposase Tn5 dimerisation domain - - - 4.062e-241 768.0
PJD3_k127_2487512_0 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 494.0
PJD3_k127_2487512_1 flagellar protein FlaG K06603 - - 0.00000000000000000000001094 102.0
PJD3_k127_2487737_0 ABC-type branched-chain amino acid transport K07121 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 487.0
PJD3_k127_2487737_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000001281 165.0
PJD3_k127_2487737_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0005817 44.0
PJD3_k127_2497856_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 2.56e-247 779.0
PJD3_k127_2497856_1 BioY family K03523 - - 0.0000000000000000000000000000000000009018 146.0
PJD3_k127_2497856_2 indolepyruvate ferredoxin oxidoreductase beta subunit K00180 - 1.2.7.8 0.000000000000003679 90.0
PJD3_k127_2506059_0 PFAM Bile acid sodium symporter K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008297 550.0
PJD3_k127_2506059_1 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000001175 213.0
PJD3_k127_2506059_2 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000756 173.0
PJD3_k127_2506059_3 regulatory protein, arsR K03892 - - 0.000000000000000000000000204 109.0
PJD3_k127_2512218_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005995 303.0
PJD3_k127_2512218_1 Xylose isomerase-like TIM barrel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001453 247.0
PJD3_k127_2548518_0 General secretion pathway protein F K02455,K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 375.0
PJD3_k127_2548518_1 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002892 260.0
PJD3_k127_2548518_5 Type II secretion system protein K K02460 - - 0.00000000000000000000112 104.0
PJD3_k127_2549570_0 CBS domain containing protein K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 564.0
PJD3_k127_2549570_1 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 467.0
PJD3_k127_2551511_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 503.0
PJD3_k127_2551511_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 482.0
PJD3_k127_2557765_0 Receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 464.0
PJD3_k127_2557765_1 usher protein - - - 0.000000000001884 72.0
PJD3_k127_2557765_2 domain, Protein - - - 0.0000005155 55.0
PJD3_k127_2558058_0 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 2.595e-244 759.0
PJD3_k127_2558058_1 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004964 242.0
PJD3_k127_2561806_0 AcrB/AcrD/AcrF family - - - 6.355e-202 639.0
PJD3_k127_2561806_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0007058 43.0
PJD3_k127_2567367_0 Penicillin-binding protein 1A K05366,K21464 - 2.4.1.129,3.4.16.4 7.931e-214 680.0
PJD3_k127_2567367_1 PFAM PhoH family protein K06217 - - 0.00000000000000000000000000000000000001452 145.0
PJD3_k127_2568723_0 AAA domain K07028 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000523 576.0
PJD3_k127_2568723_1 PFAM Class II aldolase K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 337.0
PJD3_k127_2568723_2 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002843 322.0
PJD3_k127_2568723_3 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000028 228.0
PJD3_k127_2569061_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 373.0
PJD3_k127_2578163_0 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008958 419.0
PJD3_k127_2578163_1 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 368.0
PJD3_k127_2578778_0 nucleotide catabolic process K01119 - 3.1.3.6,3.1.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008576 306.0
PJD3_k127_2578778_1 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.00000000000000000000000000001685 119.0
PJD3_k127_2584409_0 PhoU domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004889 301.0
PJD3_k127_2584409_1 phosphate symporter K14683 - - 0.000000000000000000000000000000000000000000000000000000000000000000008462 238.0
PJD3_k127_2584409_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000004982 96.0
PJD3_k127_2584532_0 transport system, permease component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 502.0
PJD3_k127_2584532_1 COG4166 ABC-type oligopeptide transport system, periplasmic component K13893 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 312.0
PJD3_k127_2588896_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.264e-209 657.0
PJD3_k127_2588896_1 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 534.0
PJD3_k127_2588896_2 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.0000000000000008652 85.0
PJD3_k127_2593628_0 PFAM H transporting two-sector ATPase alpha beta subunit central region K02412 - 3.6.3.14 1.224e-223 702.0
PJD3_k127_2593628_1 PFAM MgtE intracellular K02383 - - 0.00000000000000000000000000000000000000000003524 171.0
PJD3_k127_2593628_2 PFAM Flagellar assembly protein FliH K02411 - - 0.0000000000000003431 79.0
PJD3_k127_2596307_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 488.0
PJD3_k127_2596307_1 PFAM CBS domain K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 312.0
PJD3_k127_2596307_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006234 274.0
PJD3_k127_2598951_0 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005325 394.0
PJD3_k127_2598951_1 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000003189 201.0
PJD3_k127_2598951_2 PFAM Class III cytochrome C family - - - 0.00000000004771 70.0
PJD3_k127_2610374_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 6.336e-260 822.0
PJD3_k127_2610374_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 284.0
PJD3_k127_2624086_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003253 253.0
PJD3_k127_2624086_1 phosphorelay signal transduction system - - - 0.00000000000000000000001755 104.0
PJD3_k127_2624086_2 twitching motility protein K02669 - - 0.0000000000000000000002672 100.0
PJD3_k127_2624086_3 type II secretion system protein E K02454,K02652,K12276 - - 0.0000000001507 66.0
PJD3_k127_2624086_4 type II secretion system protein E K02652 - - 0.0004793 45.0
PJD3_k127_262905_0 signal peptide peptidase SppA, 36K type K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 365.0
PJD3_k127_262905_1 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 313.0
PJD3_k127_262905_2 aspartic-type endopeptidase activity - - - 0.0000000000000000000000000000000000000001438 161.0
PJD3_k127_262905_3 - - - - 0.00000000000000000000000000000000000002319 149.0
PJD3_k127_2634236_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003239 381.0
PJD3_k127_2634236_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002083 371.0
PJD3_k127_2634236_2 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002538 272.0
PJD3_k127_2634236_3 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000002169 185.0
PJD3_k127_2635942_0 N-methylhydantoinase A acetone carboxylase, beta subunit K01469 - 3.5.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 550.0
PJD3_k127_2635942_1 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007799 300.0
PJD3_k127_2635942_2 Aldo/keto reductase family - - - 0.0000000000000000000000007973 107.0
PJD3_k127_2641062_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.702e-196 623.0
PJD3_k127_2641062_1 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 394.0
PJD3_k127_2641062_2 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001896 291.0
PJD3_k127_2641062_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000003012 186.0
PJD3_k127_2647853_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299 - 1.17.1.10,1.17.1.9 1.124e-241 754.0
PJD3_k127_2647853_1 2Fe-2S iron-sulfur cluster binding domain K05299 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.17.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000004971 250.0
PJD3_k127_2661219_0 deoxyhypusine monooxygenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 336.0
PJD3_k127_2661219_1 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.00000000002376 66.0
PJD3_k127_2672366_0 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 398.0
PJD3_k127_2672366_1 PFAM OmpA MotB domain protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000001832 235.0
PJD3_k127_2672366_2 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000000000000002531 179.0
PJD3_k127_2672543_0 AMP-binding enzyme C-terminal domain K02363 - 2.7.7.58,6.3.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 482.0
PJD3_k127_2674317_0 phosphate ion binding K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000003683 228.0
PJD3_k127_2674317_1 - - - - 0.000000000000000000000000000000001412 131.0
PJD3_k127_2674317_2 - - - - 0.000000000006706 66.0
PJD3_k127_2674317_3 transmembrane signaling receptor activity K03406 - - 0.000001098 57.0
PJD3_k127_2676278_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 519.0
PJD3_k127_2676278_1 transcriptional regulator K13643 - - 0.000000000000000000000000000000009811 128.0
PJD3_k127_2676278_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000003426 85.0
PJD3_k127_2678722_0 PFAM chemotaxis sensory transducer - - - 0.0000000000000000000000000000001892 140.0
PJD3_k127_2678722_1 chemotaxis K03408 - - 0.00000000000000000000001997 108.0
PJD3_k127_2678722_2 PFAM CheW domain protein K03408 - - 0.000000000006979 68.0
PJD3_k127_2679497_0 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 368.0
PJD3_k127_2679497_1 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000223 244.0
PJD3_k127_2679497_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001176 233.0
PJD3_k127_2679497_3 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000001156 237.0
PJD3_k127_268532_0 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000002566 248.0
PJD3_k127_268532_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000002303 152.0
PJD3_k127_268532_2 domain protein - - - 0.000000000000000000000000000000252 134.0
PJD3_k127_2700201_0 Prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005599 486.0
PJD3_k127_2700201_1 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000516 96.0
PJD3_k127_2704691_0 Histidine kinase HAMP - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 546.0
PJD3_k127_2704691_1 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 362.0
PJD3_k127_2706941_0 MFS_1 like family - - - 0.000000000000000000000000000000000000000000000000000003407 201.0
PJD3_k127_2706941_1 Major Facilitator Superfamily - - - 0.00000000000000000164 98.0
PJD3_k127_2719649_0 PFAM GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000004796 230.0
PJD3_k127_2719649_1 RNA polymerase recycling family C-terminal K03580 - - 0.000000000000000000000000000000000000000000000005057 193.0
PJD3_k127_2719649_2 cyclic nucleotide binding K00384,K01420 - 1.8.1.9 0.00000000000000000000000007692 109.0
PJD3_k127_2720897_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 433.0
PJD3_k127_2720897_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 386.0
PJD3_k127_2730329_0 COGs COG3146 conserved K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 441.0
PJD3_k127_2730329_1 methyltransferase - - - 0.0000000000000000000000000000000000000000000000002219 179.0
PJD3_k127_2730329_2 Fic/DOC family K07341 - - 0.0000000000000000000000000000004675 132.0
PJD3_k127_2734312_0 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 452.0
PJD3_k127_2734312_1 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533,K15396 - 2.1.1.200 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 311.0
PJD3_k127_2735461_0 PFAM 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 405.0
PJD3_k127_2735461_1 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008642 363.0
PJD3_k127_2735461_2 PFAM asparagine synthase K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001191 259.0
PJD3_k127_2735461_3 PFAM B12 binding domain - - - 0.00000003677 55.0
PJD3_k127_2735461_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K07138 - - 0.0003777 48.0
PJD3_k127_2767630_0 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 476.0
PJD3_k127_2767630_1 esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009222 342.0
PJD3_k127_2769456_0 Domain of Unknown Function (DUF1080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 306.0
PJD3_k127_2769456_1 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000004146 106.0
PJD3_k127_2777239_0 Domain of unknown function (DUF4388) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009329 311.0
PJD3_k127_2777239_1 PFAM dihydropteroate synthase, DHPS K15023 - 2.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 296.0
PJD3_k127_2777239_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000001212 159.0
PJD3_k127_2777239_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000003081 146.0
PJD3_k127_2788336_0 Putative citrate transport - - - 2.954e-233 732.0
PJD3_k127_2788336_1 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 378.0
PJD3_k127_2788336_2 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000001066 163.0
PJD3_k127_2788336_3 HEAT repeats - - - 0.00000000000000000000003275 102.0
PJD3_k127_2788336_4 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000001026 59.0
PJD3_k127_2793967_0 Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007719 258.0
PJD3_k127_2793967_1 phosphatase K20074 - 3.1.3.16 0.000000000000000000000000000000000001084 150.0
PJD3_k127_2793967_2 PFAM Rhodanese domain protein - - - 0.0000000007539 64.0
PJD3_k127_2799590_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 338.0
PJD3_k127_2799590_1 Uncharacterised protein family (UPF0261) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000714 317.0
PJD3_k127_2802842_0 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000006886 205.0
PJD3_k127_2802842_1 E3 Ubiquitin ligase - - - 0.00000000000000000000000000000000000000006854 170.0
PJD3_k127_2806719_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 574.0
PJD3_k127_2806719_1 LUD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002296 262.0
PJD3_k127_2812011_0 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 593.0
PJD3_k127_2812011_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000008184 159.0
PJD3_k127_2815710_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 3.369e-199 626.0
PJD3_k127_2815710_1 Dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 509.0
PJD3_k127_2821307_0 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005018 317.0
PJD3_k127_2821307_1 cog0421, spermidine synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004532 265.0
PJD3_k127_2838646_0 response regulator K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 438.0
PJD3_k127_2838646_1 Amino acid amide ABC transporter substrate-binding protein, HAAT family K01999 - - 0.000000000000000000000000000000002157 132.0
PJD3_k127_2843389_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001318 246.0
PJD3_k127_2843389_1 PFAM Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000461 187.0
PJD3_k127_2843389_2 - - - - 0.00000000000000000000000001909 120.0
PJD3_k127_2851209_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 6.203e-203 635.0
PJD3_k127_2851209_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003759 396.0
PJD3_k127_2851209_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 315.0
PJD3_k127_2851209_3 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) - - - 0.0000000000000000000000000001493 117.0
PJD3_k127_2851209_4 - - - - 0.00000000000002944 73.0
PJD3_k127_2859329_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 359.0
PJD3_k127_2859497_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008444 538.0
PJD3_k127_2859497_1 PFAM CheC domain protein K03409 - - 0.000000000000000000000000000000000000000000000000000000000000000000002491 237.0
PJD3_k127_2871813_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 4.44e-229 716.0
PJD3_k127_2871813_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000001624 219.0
PJD3_k127_2871813_3 Methyltransferase K08316 - 2.1.1.171 0.0000000000000000000000000000000000000000299 163.0
PJD3_k127_2871813_4 Secondary thiamine-phosphate synthase enzyme - - - 0.000000000000000002559 87.0
PJD3_k127_2879761_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004433 518.0
PJD3_k127_2879761_1 PFAM Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000001225 210.0
PJD3_k127_2879761_2 Predicted permease - - - 0.00000000000000000000000000000000000000000000000000046 187.0
PJD3_k127_2882183_0 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 374.0
PJD3_k127_2882183_1 PFAM Thioredoxin K03671 - - 0.00000000000000000000000000000003071 131.0
PJD3_k127_2882183_2 regulatory protein, arsR K03892 - - 0.0000000000000000001824 93.0
PJD3_k127_2899460_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K05587,K18331 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 456.0
PJD3_k127_2899460_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K03943 - 1.6.5.3,1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000002664 249.0
PJD3_k127_2899460_2 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000005375 209.0
PJD3_k127_2900543_0 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004645 314.0
PJD3_k127_2900543_1 Peptidase family U32 - - - 0.0000000000000000000000000000000000000000000000773 173.0
PJD3_k127_2900543_2 PFAM Uncharacterised protein family UPF0047 - - - 0.00000000000000000001721 91.0
PJD3_k127_2904102_0 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007539 441.0
PJD3_k127_2904102_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000738 340.0
PJD3_k127_2904102_2 Protein of unknown function DUF116 K09729 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 323.0
PJD3_k127_2904102_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000005157 258.0
PJD3_k127_2904102_4 - - - - 0.00000000000000002177 95.0
PJD3_k127_2904102_5 - - - - 0.0000000000005945 80.0
PJD3_k127_2910192_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001182 302.0
PJD3_k127_2910192_1 Protein of unknown function (DUF445) - - - 0.000000000000000000000000000000000000000000000000000000000000000000002901 245.0
PJD3_k127_2912906_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005245 548.0
PJD3_k127_2912906_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000008903 234.0
PJD3_k127_2912906_2 Polysulphide reductase NrfD - - - 0.0000000000000000000000000000000006371 140.0
PJD3_k127_2913692_1 Required for flagellar hook formation. May act as a scaffolding protein K02389 GO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009424,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044422,GO:0044461,GO:0044463,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.000000000000000000002431 100.0
PJD3_k127_2913692_2 Flagellar basal body rod protein K02390 - - 0.00001049 50.0
PJD3_k127_2916532_0 Amino acid permease - - - 1.625e-208 659.0
PJD3_k127_2916532_1 Mechanosensitive ion channel K05802 - - 0.00001203 49.0
PJD3_k127_2921685_0 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 310.0
PJD3_k127_2921685_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145,K05829 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001616 283.0
PJD3_k127_2921685_2 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000000000004262 142.0
PJD3_k127_2923916_0 High confidence in function and specificity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 569.0
PJD3_k127_2923916_1 Homeodomain-like domain - - - 0.0000000000000000009724 85.0
PJD3_k127_2926565_0 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 394.0
PJD3_k127_2926565_1 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000128 278.0
PJD3_k127_2926565_2 Lysine 2,3-aminomutase YodO family protein K01843 - 5.4.3.2 0.00000000006166 65.0
PJD3_k127_2935926_0 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 1.412e-194 625.0
PJD3_k127_2935926_1 NADH dehydrogenase - - - 0.000000002953 64.0
PJD3_k127_2941179_0 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 572.0
PJD3_k127_2941179_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008839 387.0
PJD3_k127_2943051_0 metal-dependent phosphohydrolase, HD sub domain K01524 - 3.6.1.11,3.6.1.40 7.188e-199 632.0
PJD3_k127_2943051_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 316.0
PJD3_k127_2945377_0 lactate racemase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003311 266.0
PJD3_k127_2945377_1 SMART Metal-dependent phosphohydrolase, HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008303 253.0
PJD3_k127_2950217_0 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 3.327e-246 766.0
PJD3_k127_2950217_1 PFAM Hydantoinase B oxoprolinase K01474 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 408.0
PJD3_k127_2955836_0 Flagellar Assembly Protein A K09749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 462.0
PJD3_k127_2955836_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000002794 218.0
PJD3_k127_2955836_2 Response regulator, receiver - - - 0.000000000000000000000000000000000000000000007087 166.0
PJD3_k127_2955836_3 Belongs to the HesB IscA family - - - 0.00000003092 56.0
PJD3_k127_2960997_0 PFAM Pilus assembly protein PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 289.0
PJD3_k127_2960997_1 Type II and III secretion system protein K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000001043 248.0
PJD3_k127_2960997_2 Pilus assembly protein, PilP K02665 - - 0.000000000000000000000000000000000000000000001762 171.0
PJD3_k127_2961533_0 histidine kinase HAMP region domain protein - - - 0.0 1089.0
PJD3_k127_2961533_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 587.0
PJD3_k127_2964336_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006365 469.0
PJD3_k127_2964336_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 310.0
PJD3_k127_2964336_2 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000008592 244.0
PJD3_k127_2964336_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000004669 231.0
PJD3_k127_2964336_4 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000000007956 195.0
PJD3_k127_2964336_5 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000008232 67.0
PJD3_k127_296939_0 PFAM nucleoside recognition domain protein - - - 0.00000000000000000000000000000000000000001015 166.0
PJD3_k127_296939_1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K03796 - - 0.000000008406 66.0
PJD3_k127_2980316_0 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 366.0
PJD3_k127_2980316_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000001569 130.0
PJD3_k127_2999544_0 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.0000000000000000000000000000000000000000000000000000004806 203.0
PJD3_k127_2999544_3 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000005727 93.0
PJD3_k127_3001981_0 NhaP-type Na H and K H - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006016 262.0
PJD3_k127_3001981_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.0000000000000000000000000000000000000000000000000000000000000001962 224.0
PJD3_k127_3001981_2 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000004177 147.0
PJD3_k127_3007776_0 Protein of unknown function (DUF3141) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003479 479.0
PJD3_k127_3007776_1 short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000004343 171.0
PJD3_k127_3007776_2 PFAM PHA accumulation regulator DNA-binding protein - - - 0.00000000000000000003606 92.0
PJD3_k127_3010441_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008543 405.0
PJD3_k127_3010441_1 Penicillin-binding protein, 1A family K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 361.0
PJD3_k127_3010441_2 DDE superfamily endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004917 280.0
PJD3_k127_3013362_0 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 424.0
PJD3_k127_3013362_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000004389 254.0
PJD3_k127_3021780_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 2.636e-224 711.0
PJD3_k127_3021780_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 1.038e-203 654.0
PJD3_k127_3021780_2 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 570.0
PJD3_k127_3021780_3 response regulator K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 361.0
PJD3_k127_3021780_4 Universal stress protein family - - - 0.000000000000000000000000005308 121.0
PJD3_k127_3021780_5 Phosphatase - - - 0.0002646 46.0
PJD3_k127_3025038_0 peptidase M48, Ste24p - - - 8.875e-226 714.0
PJD3_k127_3025038_1 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 453.0
PJD3_k127_3025038_2 - - - - 0.00000000000000000000000000000000000000000000000000115 194.0
PJD3_k127_3025038_4 Protein of unknown function (DUF815) K06923 - - 0.00002388 57.0
PJD3_k127_3033085_0 PFAM Conserved region in glutamate synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005457 413.0
PJD3_k127_3033085_1 Ribonuclease R winged-helix domain K09720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 365.0
PJD3_k127_3033085_2 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 293.0
PJD3_k127_3033085_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 299.0
PJD3_k127_3033085_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000004634 100.0
PJD3_k127_3037651_0 RNA-binding protein S4 K14761 - - 0.000000000000003498 79.0
PJD3_k127_3037651_2 Histidine kinase - - - 0.00000007001 59.0
PJD3_k127_3047027_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 4e-323 1002.0
PJD3_k127_3047027_1 PBS lyase HEAT-like repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 577.0
PJD3_k127_3047027_2 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007256 483.0
PJD3_k127_3048544_0 Cation transporter/ATPase, N-terminus K01537,K01539 - 3.6.3.8,3.6.3.9 0.0 1243.0
PJD3_k127_3048544_1 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009019 358.0
PJD3_k127_3048544_2 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 289.0
PJD3_k127_3048544_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000004335 196.0
PJD3_k127_3048544_4 Cytochrome c - - - 0.0000000000000000000000000000003361 124.0
PJD3_k127_3057314_0 PFAM Acetyl-CoA hydrolase transferase - - - 3.858e-256 800.0
PJD3_k127_3057314_1 His Kinase A (phosphoacceptor) domain K10125 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005099 533.0
PJD3_k127_3066267_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 394.0
PJD3_k127_3070913_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 2.443e-216 680.0
PJD3_k127_3070913_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005447 311.0
PJD3_k127_3070913_2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001092 273.0
PJD3_k127_3070913_3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003403 253.0
PJD3_k127_3096904_0 e3 binding domain K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 352.0
PJD3_k127_3096904_1 Transketolase, pyrimidine binding domain K00162,K00167 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000009306 168.0
PJD3_k127_3100638_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 3.704e-224 700.0
PJD3_k127_3100638_1 Nitroreductase family - - - 0.00000000009672 64.0
PJD3_k127_3101722_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000569 295.0
PJD3_k127_3101722_1 PFAM magnesium chelatase ChlI subunit K07391 - - 0.00000000000000000000000000000000000000000000004313 175.0
PJD3_k127_3101722_2 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000004495 164.0
PJD3_k127_3104223_0 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 0.0 1039.0
PJD3_k127_3104223_1 Universal stress protein - - - 0.00000000000000007719 88.0
PJD3_k127_3108397_0 NADH dehydrogenase K00335,K18331 - 1.12.1.3,1.6.5.3 4.258e-215 679.0
PJD3_k127_3108397_1 4Fe-4S ferredoxin iron-sulfur binding domain protein K05588 - 1.6.5.3 0.000000000000000000000000000000000000000000003603 167.0
PJD3_k127_3115120_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 3.125e-201 636.0
PJD3_k127_3115120_1 PFAM ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 353.0
PJD3_k127_3115120_2 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000000000000000000000000000000000000000000000000003249 220.0
PJD3_k127_3115120_3 TIGRFAM lipopolysaccharide transport periplasmic protein LptA K09774 - - 0.00000000000000000000000000000000000000000839 164.0
PJD3_k127_3128538_0 histidine kinase, HAMP K02482 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 545.0
PJD3_k127_3128538_1 SpoU rRNA Methylase family K03437 - - 0.0000000000000000000000000000000000001048 145.0
PJD3_k127_3128538_2 response regulator - - - 0.00000000000002104 74.0
PJD3_k127_3136253_0 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 325.0
PJD3_k127_3136253_1 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000001573 159.0
PJD3_k127_3145395_0 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001212 261.0
PJD3_k127_3145395_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000001543 181.0
PJD3_k127_3145395_2 Nuclease (SNase domain protein) - - - 0.00000000000000304 80.0
PJD3_k127_3160978_0 PFAM Multicopper oxidase - - - 0.000000000000000000000000000000000000000001003 177.0
PJD3_k127_3179629_0 SMART Elongator protein 3 MiaB NifB - - - 6.237e-279 873.0
PJD3_k127_3179629_1 pfam abc1 K03688 - - 6.151e-243 762.0
PJD3_k127_3179629_10 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000001039 157.0
PJD3_k127_3179629_11 TIGRFAM cytochrome C family protein - - - 0.0000000000000000000000000000006364 128.0
PJD3_k127_3179629_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 2.188e-195 632.0
PJD3_k127_3179629_3 PFAM Cation transporter K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 512.0
PJD3_k127_3179629_4 Protein of unknown function (DUF554) K07150 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003228 258.0
PJD3_k127_3179629_5 response to stress - - - 0.000000000000000000000000000000000000000000000000000000000000000000002809 246.0
PJD3_k127_3179629_6 PFAM TrkA-N domain protein K03499 - - 0.0000000000000000000000000000000000000000000000000000000000002746 229.0
PJD3_k127_3179629_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000004855 221.0
PJD3_k127_3179629_8 PFAM TrkA-N domain protein K03499 - - 0.00000000000000000000000000000000000000000000000000000005767 214.0
PJD3_k127_3179629_9 PFAM CreA family protein K05805 - - 0.000000000000000000000000000000000000000000000000000003224 196.0
PJD3_k127_3181572_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 549.0
PJD3_k127_3181572_1 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 322.0
PJD3_k127_3181572_3 Amidohydrolase K07045 - - 0.000009944 49.0
PJD3_k127_3203144_0 PFAM aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 591.0
PJD3_k127_3203662_0 7TM-HD extracellular K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007264 471.0
PJD3_k127_3203662_1 Prokaryotic diacylglycerol kinase K00901 - 2.7.1.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000008811 269.0
PJD3_k127_3203662_2 CBS domain containing protein K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000006724 243.0
PJD3_k127_3203662_3 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000002621 126.0
PJD3_k127_3215717_0 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 432.0
PJD3_k127_3215717_1 phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 426.0
PJD3_k127_3215717_2 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005592 299.0
PJD3_k127_3215717_3 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K04108 - 1.3.7.9 0.00000000000000000000000000000000000006127 150.0
PJD3_k127_3218938_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1242.0
PJD3_k127_3218938_1 Belongs to the glutamate synthase family K00265 - 1.4.1.13,1.4.1.14 7.079e-264 814.0
PJD3_k127_3223388_0 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 292.0
PJD3_k127_3223388_1 ABC transporter K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000007345 231.0
PJD3_k127_3223388_2 peptidyl-tyrosine sulfation K00525,K01768 - 1.17.4.1,4.6.1.1 0.0000000000000000000000000000000000000000002892 165.0
PJD3_k127_3223388_3 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000001549 160.0
PJD3_k127_3223388_4 Thioesterase superfamily K01075 - 3.1.2.23 0.0000000000000000000000000000006441 129.0
PJD3_k127_3230740_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001622 539.0
PJD3_k127_3230740_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.00000000000000000000000000000000000001343 146.0
PJD3_k127_3245811_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 2.661e-204 649.0
PJD3_k127_3248175_0 adenosylhomocysteinase K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 611.0
PJD3_k127_3248175_1 Alpha amylase catalytic K00690 - 2.4.1.7 0.0000402 49.0
PJD3_k127_3252324_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 1.646e-213 674.0
PJD3_k127_3252324_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 308.0
PJD3_k127_3252324_2 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 298.0
PJD3_k127_3252324_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000006025 240.0
PJD3_k127_3252324_4 Pyridine nucleotide-disulphide oxidoreductase K15022 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0055114,GO:0071944 1.17.1.10 0.000000000000000000000000000000000000000000000000000004643 193.0
PJD3_k127_3252324_5 Part of a membrane complex involved in electron transport K03612 - - 0.000000000000000000000000000000005782 131.0
PJD3_k127_3252646_0 Voltage gated chloride channel K03281 - - 9.04e-228 717.0
PJD3_k127_3252646_1 Catalyzes the conversion of dihydroorotate to orotate K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000007164 227.0
PJD3_k127_3260597_0 PQQ-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003673 426.0
PJD3_k127_3260597_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000004084 124.0
PJD3_k127_3261812_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004388 428.0
PJD3_k127_3261812_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000424 284.0
PJD3_k127_3261812_2 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000002965 263.0
PJD3_k127_3261812_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000005912 242.0
PJD3_k127_3261812_4 SAM-dependent RNA methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000008851 213.0
PJD3_k127_3261812_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000009682 187.0
PJD3_k127_3261812_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000001791 179.0
PJD3_k127_3261812_7 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000000008232 143.0
PJD3_k127_3261812_8 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000003114 130.0
PJD3_k127_3269387_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 1.175e-201 637.0
PJD3_k127_3269387_1 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 285.0
PJD3_k127_3278357_0 Tetratricopeptide repeats - - - 4.947e-251 795.0
PJD3_k127_3282585_0 Major Facilitator Superfamily K02575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006137 269.0
PJD3_k127_3282585_1 NUDIX domain - - - 0.00000000000000000000000000000000000000000000000000001091 197.0
PJD3_k127_3282585_2 Amidohydrolase - - - 0.000000000000000000000000000000000001156 152.0
PJD3_k127_3304894_0 PFAM Acyl-CoA dehydrogenase K16173 - 1.3.99.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003134 514.0
PJD3_k127_3304894_1 TIGRFAM sodium ion-translocating decarboxylase, beta subunit K01572 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 316.0
PJD3_k127_3304894_2 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958,K02160,K17490 - 2.1.3.1,6.4.1.1 0.0000000000000003057 80.0
PJD3_k127_332659_0 Chloride channel K03281 - - 5.785e-261 818.0
PJD3_k127_332659_1 PFAM UvrD REP helicase K03657 - 3.6.4.12 7.308e-195 632.0
PJD3_k127_332659_2 - - - - 0.00000000000001436 82.0
PJD3_k127_3328150_0 Protein of unknown function (DUF1329) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 596.0
PJD3_k127_3328150_1 Protein of unknown function (DUF1302) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005631 245.0
PJD3_k127_3329221_0 Molecular chaperone. Has ATPase activity K04079 - - 7.94e-257 814.0
PJD3_k127_3329221_1 Peptidase M16C associated K06972 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003321 250.0
PJD3_k127_3329221_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000003251 68.0
PJD3_k127_3329221_3 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.00001592 56.0
PJD3_k127_3331712_0 Multicopper oxidase - - - 7.328e-202 645.0
PJD3_k127_3331712_1 Belongs to the bacterial solute-binding protein 3 family K02030,K10001 - - 0.00000000000000000000000000000000000000000000006432 173.0
PJD3_k127_3332534_0 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006019 262.0
PJD3_k127_3332534_1 PFAM glycosyl transferase family 9 - - - 0.000000000000000000000000000000000000000000000000001287 190.0
PJD3_k127_3332534_2 Signal transduction protein - - - 0.00000000000000000000000000000000009574 147.0
PJD3_k127_3334939_0 acyl-coa dehydrogenase - - - 8.812e-217 676.0
PJD3_k127_3334939_1 PFAM carboxyl transferase K01615 - 4.1.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 427.0
PJD3_k127_3334939_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000218 301.0
PJD3_k127_3334939_3 Transcriptional regulator - - - 0.00000000000000000000000000000000003556 139.0
PJD3_k127_33439_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004857 272.0
PJD3_k127_33439_1 YdjC-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000004777 235.0
PJD3_k127_33439_2 Thioesterase-like superfamily K10805 - - 0.0000000000000000000000000000008289 123.0
PJD3_k127_3346188_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007372 589.0
PJD3_k127_3346188_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004578 343.0
PJD3_k127_3346188_2 conserved protein UCP033563 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004426 318.0
PJD3_k127_3346188_3 PFAM methyltransferase K15460 - 2.1.1.223 0.00000000000000000000000000000000000000000000000000000000000000000000262 252.0
PJD3_k127_3346188_4 Protein of unknown function (DUF3343) - - - 0.0000000000000000000000005865 107.0
PJD3_k127_3346188_5 Protein of unknown function (DUF721) - - - 0.0000000000000000009194 93.0
PJD3_k127_3347330_0 histidine kinase HAMP region domain protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003092 290.0
PJD3_k127_3347330_1 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000009226 130.0
PJD3_k127_3347330_2 Predicted membrane protein (DUF2238) K08984 - - 0.000000064 63.0
PJD3_k127_3353774_0 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000006638 225.0
PJD3_k127_3353774_1 COGs COG4087 Soluble P-type ATPase - - - 0.0000000000000000000000000000000000000000000000000000005778 198.0
PJD3_k127_3353774_2 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000001099 187.0
PJD3_k127_3357606_0 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009853 366.0
PJD3_k127_3357606_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.000000000000000000000000000000000000000000000000000000000000004144 222.0
PJD3_k127_3357606_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000001469 108.0
PJD3_k127_3361204_0 PFAM carboxyl transferase K01615 - 4.1.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 496.0
PJD3_k127_3361204_1 PFAM carboxyl transferase K01615 - 4.1.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003262 305.0
PJD3_k127_3361204_2 PFAM Acyl-CoA dehydrogenase K16173 - 1.3.99.32 0.00000000000000000000000000000000000000000002125 161.0
PJD3_k127_3368976_0 COG0471 Di- and tricarboxylate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007699 260.0
PJD3_k127_3368976_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000000000000000000000000000000000000000004721 191.0
PJD3_k127_3368976_2 ATPase BadF BadG BcrA BcrD type - - - 0.0008996 43.0
PJD3_k127_3373135_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 576.0
PJD3_k127_3373135_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001984 259.0
PJD3_k127_337528_0 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 563.0
PJD3_k127_337528_1 Las17-binding protein actin regulator - - - 0.00000000000000000000000000000000000000000000000000000000000009663 219.0
PJD3_k127_337528_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000007598 151.0
PJD3_k127_337595_0 Pyridine nucleotide-disulphide oxidoreductase K15022 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0055114,GO:0071944 1.17.1.10 3.391e-276 856.0
PJD3_k127_337595_1 2Fe-2S iron-sulfur cluster binding domain K05299 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016651,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051540,GO:0055114,GO:0071944 1.17.1.10 0.0000000000000000000008118 97.0
PJD3_k127_3419339_0 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 315.0
PJD3_k127_3419339_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.000000000000000000000000000000000004098 141.0
PJD3_k127_3419339_2 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000006598 106.0
PJD3_k127_3421288_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000227 440.0
PJD3_k127_3421288_1 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 405.0
PJD3_k127_3421288_2 thiolester hydrolase activity - - - 0.00000000000000000000000000000000000000000000000000009478 190.0
PJD3_k127_3432520_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006792 308.0
PJD3_k127_3432520_1 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000000000000000000000005917 212.0
PJD3_k127_3432520_3 Histidine kinase - - - 0.00002755 55.0
PJD3_k127_3432520_4 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00004768 52.0
PJD3_k127_343894_0 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000002745 202.0
PJD3_k127_343894_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000001509 164.0
PJD3_k127_343894_2 TIGRFAM cytochrome C family protein - - - 0.00000000000000000978 95.0
PJD3_k127_3440800_0 NADH dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 304.0
PJD3_k127_3440800_1 ATP synthesis coupled electron transport K12137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000241 277.0
PJD3_k127_345092_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009672 432.0
PJD3_k127_345092_1 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 391.0
PJD3_k127_345092_2 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 375.0
PJD3_k127_3454286_0 Pfam:Pyridox_oxidase - - - 0.000000000000000000000000000000000000000000000000008632 183.0
PJD3_k127_3460547_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII - - - 0.0000000000000000000000000000000000000000000000000000000000000000004833 250.0
PJD3_k127_3465851_0 TIGRFAM acetoacetyl-CoA synthase K01907 - 6.2.1.16 1.563e-205 643.0
PJD3_k127_3465851_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 365.0
PJD3_k127_3465851_2 PFAM Pyruvate carboxyltransferase K01640 - 4.1.3.4 0.00000000000000000000000000000001105 128.0
PJD3_k127_3479115_0 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 346.0
PJD3_k127_3479115_1 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007216 344.0
PJD3_k127_3479115_2 bacterial-type flagellum-dependent cell motility K01317 - 3.4.21.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000665 294.0
PJD3_k127_3484718_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000689 454.0
PJD3_k127_3487837_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.045e-210 662.0
PJD3_k127_3487837_1 PFAM PSP1 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 349.0
PJD3_k127_3487837_2 DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.000000184 56.0
PJD3_k127_3488412_0 PFAM Radical SAM - - - 1.055e-199 641.0
PJD3_k127_3488412_1 PFAM Rhomboid family K07059 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 340.0
PJD3_k127_3497330_0 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 412.0
PJD3_k127_3497330_1 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 361.0
PJD3_k127_3497330_2 PFAM glycosyl transferase family 9 K02843 - - 0.00000000000000000000000000000000000000000000000000000002707 199.0
PJD3_k127_3505602_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 1.072e-255 822.0
PJD3_k127_3505602_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007977 434.0
PJD3_k127_3505602_2 protein conserved in bacteria (DUF2064) K09931 - - 0.0000000000000000000000000000000000000000000000005475 183.0
PJD3_k127_3505602_3 Periplasmic binding protein - - - 0.00000000000000000000000000000000000000000000007068 186.0
PJD3_k127_3513804_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002556 533.0
PJD3_k127_3513804_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005875 485.0
PJD3_k127_3513804_2 TIGRFAM cytochrome C family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009885 387.0
PJD3_k127_3513804_3 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 370.0
PJD3_k127_3513804_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000001333 186.0
PJD3_k127_3513804_6 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.0000000000000000000000000000000000000000000000002601 186.0
PJD3_k127_3518379_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 454.0
PJD3_k127_3518379_1 PFAM Cobyrinic acid ac-diamide synthase K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 368.0
PJD3_k127_3518379_2 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007739 353.0
PJD3_k127_3518379_3 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000002451 188.0
PJD3_k127_35219_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003554 566.0
PJD3_k127_35219_1 Thioredoxin-like - - - 0.00000000000000000000000000000000000008807 156.0
PJD3_k127_35219_2 PFAM response regulator receiver - - - 0.00000000000000000000000000000001255 131.0
PJD3_k127_3527830_0 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 378.0
PJD3_k127_3527830_1 Membrane protease subunits, stomatin prohibitin homologs K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 320.0
PJD3_k127_3527830_2 TraB family K09973 - - 0.000000000000000000000000000000000002042 147.0
PJD3_k127_3531782_0 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 351.0
PJD3_k127_3531782_1 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000001193 203.0
PJD3_k127_3531782_2 response regulator K02479 - - 0.00000000000000000000000000000000000003307 145.0
PJD3_k127_3562601_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 598.0
PJD3_k127_3562601_1 PFAM NAD-dependent epimerase dehydratase K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000727 524.0
PJD3_k127_3571339_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1040.0
PJD3_k127_3574754_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 392.0
PJD3_k127_3574754_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000001061 247.0
PJD3_k127_3574754_2 Cupin - - - 0.0000000000000000000000001097 109.0
PJD3_k127_3598483_0 TraB family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 506.0
PJD3_k127_3598483_1 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000001176 196.0
PJD3_k127_3605642_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 537.0
PJD3_k127_3608040_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 554.0
PJD3_k127_3608040_1 ribonuclease BN K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 450.0
PJD3_k127_3608040_2 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000007252 201.0
PJD3_k127_3611829_0 PFAM sigma-54 factor interaction domain-containing protein - - - 2.955e-238 752.0
PJD3_k127_3611829_1 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000002238 255.0
PJD3_k127_3611829_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000002273 151.0
PJD3_k127_3615737_0 Type II and III secretion system protein K02453 - - 3.078e-256 812.0
PJD3_k127_3615737_1 Domain present in PSD-95, Dlg, and ZO-1/2. K02452 - - 0.0000000000000000000000000000000000000000000000000000000000007842 214.0
PJD3_k127_3617530_0 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 449.0
PJD3_k127_3617530_1 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000009193 256.0
PJD3_k127_3617530_2 thiol-disulfide isomerase and thioredoxins - - - 0.00007828 46.0
PJD3_k127_3621753_0 carboxylase K01571,K01960 - 4.1.1.3,6.4.1.1 1.006e-305 947.0
PJD3_k127_3630609_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009607 520.0
PJD3_k127_3630609_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 345.0
PJD3_k127_3630609_2 PFAM Metal-dependent hydrolase HDOD - - - 0.0002416 44.0
PJD3_k127_3640375_0 Cell surface protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529 358.0
PJD3_k127_3640375_1 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 315.0
PJD3_k127_3640375_2 Putative regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005681 261.0
PJD3_k127_3640375_3 hydrolases or acyltransferases, alpha beta hydrolase superfamily K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003969 258.0
PJD3_k127_3640375_4 Belongs to the LarC family K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000001029 212.0
PJD3_k127_3640375_5 Major Facilitator Superfamily - - - 0.000000000000000000000002817 110.0
PJD3_k127_3657443_0 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 359.0
PJD3_k127_3657443_1 PFAM ABC transporter K02003 - - 0.0000000000000000000000000001754 116.0
PJD3_k127_3660011_0 Response regulator receiver modulated diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001821 527.0
PJD3_k127_3680115_0 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005235 430.0
PJD3_k127_3680115_1 RDD family - - - 0.0000000000000000000003155 106.0
PJD3_k127_3680115_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000006607 81.0
PJD3_k127_3682759_0 cell wall glycoprotein biosynthetic process - - - 1.305e-224 700.0
PJD3_k127_3682759_1 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000003306 104.0
PJD3_k127_3683965_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006381 258.0
PJD3_k127_3683965_1 EamA-like transporter family - - - 0.00000000007072 65.0
PJD3_k127_3692086_0 PFAM Integrase catalytic - - - 5.054e-229 719.0
PJD3_k127_3693746_0 PFAM CoA-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001778 252.0
PJD3_k127_3693746_1 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000004268 163.0
PJD3_k127_3693870_0 Zn-dependent hydrolase, glyoxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 290.0
PJD3_k127_3693870_1 PFAM flavin reductase domain protein, FMN-binding - - - 0.0000000000000000000007392 102.0
PJD3_k127_3700189_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 546.0
PJD3_k127_3703370_0 Protein of unknown function (DUF3108) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 310.0
PJD3_k127_3703370_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000001297 198.0
PJD3_k127_3705407_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 540.0
PJD3_k127_3705407_1 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions - - - 0.00000000000000000000001956 100.0
PJD3_k127_3715156_0 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000005275 218.0
PJD3_k127_3715156_1 thiamine pyrophosphokinase K00949 - 2.7.6.2 0.00000000000000000000003299 109.0
PJD3_k127_3715156_2 Sodium:solute symporter family K03307 - - 0.000000000000007626 78.0
PJD3_k127_3718289_0 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000842 445.0
PJD3_k127_3718289_1 Archease protein family (MTH1598/TM1083) - - - 0.00000006147 61.0
PJD3_k127_3720633_0 Na phosphate symporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 434.0
PJD3_k127_3720633_1 ATPase activity K01990,K06021,K06857 - 3.6.3.27,3.6.3.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008065 276.0
PJD3_k127_3720633_2 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000001891 227.0
PJD3_k127_3722058_0 Chromosomal replication initiator, DnaA K07491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 330.0
PJD3_k127_3722058_1 response regulator, receiver - - - 0.00000000000000000000000002524 115.0
PJD3_k127_3745460_0 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 314.0
PJD3_k127_3745460_2 Haloacid dehalogenase-like hydrolase K07025,K20866 - 3.1.3.10 0.0000000000102 70.0
PJD3_k127_3754121_0 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 570.0
PJD3_k127_3754121_1 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.0000000000000000000000000005212 124.0
PJD3_k127_3754121_2 carbohydrate transport K11688,K21395 - - 0.000000000000000000000007935 104.0
PJD3_k127_3770946_0 EXOIII K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001514 432.0
PJD3_k127_3770946_1 cheY-homologous receiver domain - - - 0.0000000000000001341 79.0
PJD3_k127_3773387_0 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005038 353.0
PJD3_k127_3773387_1 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000002578 224.0
PJD3_k127_3775591_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1228.0
PJD3_k127_3775591_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000001443 216.0
PJD3_k127_378468_0 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000000000000759 165.0
PJD3_k127_378468_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000005886 156.0
PJD3_k127_378468_2 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000008971 147.0
PJD3_k127_378468_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000839 48.0
PJD3_k127_3784829_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 374.0
PJD3_k127_3784829_1 PFAM RNA binding S1 domain protein K02945 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008962 247.0
PJD3_k127_3785670_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 1.233e-320 990.0
PJD3_k127_3785670_1 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 421.0
PJD3_k127_3785670_3 - - - - 0.0000000000000000000000000000000000000000007277 172.0
PJD3_k127_3785670_4 COG0559 Branched-chain amino acid ABC-type transport system, permease components K01997 - - 0.00000002273 56.0
PJD3_k127_3791328_0 Acts as a magnesium transporter K06213 - - 1.676e-221 693.0
PJD3_k127_3791328_1 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000386 520.0
PJD3_k127_3791328_2 Enoyl-(Acyl carrier protein) reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005067 376.0
PJD3_k127_3791328_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000369 258.0
PJD3_k127_3791328_5 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000001171 164.0
PJD3_k127_3791328_6 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000002547 116.0
PJD3_k127_3792160_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 3.737e-289 898.0
PJD3_k127_3792160_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 3.206e-195 622.0
PJD3_k127_3792160_2 Conserved TM helix - - - 0.0000000000000000000005744 96.0
PJD3_k127_3792160_3 gag-polyprotein putative aspartyl protease - - - 0.00000000000001348 74.0
PJD3_k127_3792160_4 Binding-protein-dependent transport system inner membrane component - - - 0.00009548 55.0
PJD3_k127_3800907_0 Cytochrome c554 and c-prime K10535 - 1.7.2.6 0.0000000000000000000000000000000000000000000000006832 181.0
PJD3_k127_3800907_1 - - - - 0.0000000000000000000000000000008387 129.0
PJD3_k127_3800907_2 Domain of unknown function (DUF4105) - - - 0.00000006736 56.0
PJD3_k127_3802082_0 PFAM amine oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 377.0
PJD3_k127_3802082_1 PFAM Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000003739 276.0
PJD3_k127_3813048_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 5.963e-270 835.0
PJD3_k127_3813048_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 309.0
PJD3_k127_3813048_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000005051 192.0
PJD3_k127_3813048_3 ATP:ADP antiporter activity K15762 - - 0.00000000000000000000000000000000000000000000000000003672 209.0
PJD3_k127_3813048_4 Pentapeptide repeats (8 copies) - - - 0.000000000000000000000000000000000000000004495 166.0
PJD3_k127_3818379_0 PFAM phosphoesterase, RecJ domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000008991 235.0
PJD3_k127_3818379_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000002546 178.0
PJD3_k127_3826216_0 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 383.0
PJD3_k127_3826216_1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 379.0
PJD3_k127_3826216_2 - - - - 0.00000000000000000000000000000000000000000000639 175.0
PJD3_k127_384237_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026 441.0
PJD3_k127_384237_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 384.0
PJD3_k127_384237_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000645 234.0
PJD3_k127_384237_3 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.000000000000000000000000000000000000000000000000000000000000000003815 226.0
PJD3_k127_3844936_0 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005645 433.0
PJD3_k127_3844936_1 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.00000000000000000000000000001064 119.0
PJD3_k127_3844936_2 Tetratricopeptide repeat - - - 0.00000000000000003357 90.0
PJD3_k127_3857378_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 2.393e-303 943.0
PJD3_k127_3857378_1 PFAM AMP-dependent synthetase and ligase - - - 2.922e-199 628.0
PJD3_k127_3857378_2 PFAM regulatory protein TetR K13770 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009535 253.0
PJD3_k127_3857755_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1155.0
PJD3_k127_3869736_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 546.0
PJD3_k127_3869736_1 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 362.0
PJD3_k127_3869736_2 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009255 307.0
PJD3_k127_3904296_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016150,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 7.918e-259 807.0
PJD3_k127_3904296_1 Transposase DDE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 316.0
PJD3_k127_39062_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 506.0
PJD3_k127_39062_1 Cyclic nucleotide-monophosphate binding domain K04739 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 322.0
PJD3_k127_39062_2 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 317.0
PJD3_k127_3920529_0 ethanolamine utilization protein K04019 GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0030091,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050790,GO:0051339,GO:0051349,GO:0065007,GO:0065009,GO:0071704,GO:1901564 - 5.194e-198 627.0
PJD3_k127_3920529_1 Belongs to the UbiD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007596 597.0
PJD3_k127_3920529_2 Class ii aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000001175 159.0
PJD3_k127_3920529_3 Type III restriction enzyme res subunit - - - 0.0000000008874 69.0
PJD3_k127_3945997_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 533.0
PJD3_k127_3945997_1 Phenylalanyl-tRNA synthetase, beta subunit K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000004816 249.0
PJD3_k127_3945997_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000000005135 164.0
PJD3_k127_394749_0 PFAM transposase, IS4 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 418.0
PJD3_k127_3947614_0 Beta-ketoacyl synthase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005657 344.0
PJD3_k127_3947614_1 PFAM OsmC family protein - - - 0.0000000000000000000000000000000000000002378 156.0
PJD3_k127_3962197_0 Na dependent nucleoside transporter K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 553.0
PJD3_k127_3962197_1 PFAM Auxin Efflux Carrier K07088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003637 283.0
PJD3_k127_3962197_2 Redoxin - - - 0.00000000000000001249 85.0
PJD3_k127_3962197_3 Redoxin - - - 0.0000005564 55.0
PJD3_k127_3976601_0 PFAM Na transporting methylmalonyl-CoA oxaloacetate decarboxylase beta subunit K01572 - 4.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005005 267.0
PJD3_k127_3976601_2 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000006414 87.0
PJD3_k127_3976601_3 - - - - 0.0000006418 51.0
PJD3_k127_3982273_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K04108 - 1.3.7.9 0.0 1205.0
PJD3_k127_3982273_1 PFAM major facilitator superfamily MFS_1 K08177 - - 0.000000000000000000000000000000000000000000000000000000000000003682 225.0
PJD3_k127_39843_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 1.053e-233 738.0
PJD3_k127_39843_1 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004189 441.0
PJD3_k127_39843_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431,K12251 - 3.5.1.53,3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 323.0
PJD3_k127_39843_3 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000000000003238 184.0
PJD3_k127_39843_4 Sporulation related domain - - - 0.0000000000000000000000000000000000002878 149.0
PJD3_k127_39843_6 PFAM Colicin V production K03558 - - 0.000001209 58.0
PJD3_k127_3987724_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007155 309.0
PJD3_k127_3987724_1 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000004933 224.0
PJD3_k127_3987724_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000001298 186.0
PJD3_k127_3987724_3 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.000000000000003925 78.0
PJD3_k127_3997881_0 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 9.304e-232 728.0
PJD3_k127_3997881_1 helix_turn_helix, arabinose operon control protein K02508,K18954 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001643 252.0
PJD3_k127_4024778_0 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0000000000000000000000000000000000000000000000000000000000000001163 229.0
PJD3_k127_4024778_1 Curli production assembly/transport component CsgG - - - 0.000000000000000000000000000000000000000000000000004118 196.0
PJD3_k127_4024778_2 Curli production assembly/transport component CsgG - - - 0.00000000000000000000002995 101.0
PJD3_k127_4024778_3 Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b) K07337,K21008 GO:0000270,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009279,GO:0009987,GO:0016020,GO:0019867,GO:0019899,GO:0030203,GO:0030234,GO:0030312,GO:0030313,GO:0031241,GO:0031975,GO:0034645,GO:0042546,GO:0043085,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044093,GO:0044237,GO:0044249,GO:0044260,GO:0044425,GO:0044462,GO:0044464,GO:0050790,GO:0065007,GO:0065009,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0098552,GO:0098772,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000001896 99.0
PJD3_k127_4024778_4 - - - - 0.00001997 57.0
PJD3_k127_4025641_0 histidine kinase HAMP region domain protein K13598 - 2.7.13.3 7.679e-249 793.0
PJD3_k127_4025641_1 response regulator K13599 - - 0.0000000000000000000000000000000000000000000006128 180.0
PJD3_k127_4027000_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 4.438e-303 957.0
PJD3_k127_4027000_1 Domain of unknown function (DUF386) - - - 0.000000000000000000000000000000000000000000005176 173.0
PJD3_k127_4032732_0 Polyphosphate kinase 2 (PPK2) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 550.0
PJD3_k127_4032732_1 Ion transport protein K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 345.0
PJD3_k127_4032732_2 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000000001103 153.0
PJD3_k127_4032732_3 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000000001611 157.0
PJD3_k127_4032732_4 chaperone-mediated protein folding - - - 0.000000000000000000000000000001507 129.0
PJD3_k127_4043600_0 SMART Elongator protein 3 MiaB NifB K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005403 506.0
PJD3_k127_4043600_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 330.0
PJD3_k127_4043600_2 NAD(P)H dehydrogenase (quinone) activity - - - 0.00000000000000000000000000000000000008333 144.0
PJD3_k127_4043600_3 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000382 72.0
PJD3_k127_4049540_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 2.687e-227 713.0
PJD3_k127_4049540_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 330.0
PJD3_k127_4049540_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001021 282.0
PJD3_k127_4052809_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000715 460.0
PJD3_k127_4052809_1 two component, sigma54 specific, transcriptional regulator, Fis family K10943 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000103 265.0
PJD3_k127_4054728_0 Adenylate cyclase K05851 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 300.0
PJD3_k127_4054728_1 Protein of unknown function (DUF2889) - - - 0.000000000000000000000000000000000000000000000004636 179.0
PJD3_k127_4054728_2 Nitronate monooxygenase K00459,K02371 - 1.13.12.16,1.3.1.9 0.00000000000000000000000000000001337 128.0
PJD3_k127_4078676_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 1.252e-194 613.0
PJD3_k127_4078676_1 HlyD family secretion protein K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 420.0
PJD3_k127_4095569_0 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 615.0
PJD3_k127_4095569_1 ABC transporter K09810 - - 0.000000000000000000000000000000000000001538 149.0
PJD3_k127_4100259_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005331 250.0
PJD3_k127_4100259_1 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000003633 177.0
PJD3_k127_4100259_2 - - - - 0.00000000000000000000003328 103.0
PJD3_k127_4114003_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 6.627e-256 805.0
PJD3_k127_4122011_0 Bacterial transglutaminase-like N-terminal - - - 0.0 1545.0
PJD3_k127_4122011_1 PFAM Bacterial domain of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 519.0
PJD3_k127_4131213_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008995 505.0
PJD3_k127_4131213_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000001371 240.0
PJD3_k127_4131243_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 340.0
PJD3_k127_4131243_1 - - - - 0.00000000000000000000000000000001059 131.0
PJD3_k127_4151751_0 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 458.0
PJD3_k127_4151751_2 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000003769 116.0
PJD3_k127_4151751_3 Regulatory protein, FmdB family - - - 0.00000000000000000000001164 112.0
PJD3_k127_4152485_0 transmembrane signaling receptor activity K03406,K11527 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009959 354.0
PJD3_k127_4152485_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000002221 67.0
PJD3_k127_4160163_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 2.752e-195 617.0
PJD3_k127_4160163_1 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 589.0
PJD3_k127_4160163_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007949 573.0
PJD3_k127_4160163_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001352 245.0
PJD3_k127_4160163_4 Essential cell division protein K03589 - - 0.000000000000000000000000000000000000000000000000000000004295 207.0
PJD3_k127_418876_0 PFAM peptidase M4 thermolysin - - - 0.00000000004033 72.0
PJD3_k127_418876_1 PFAM O-Antigen - - - 0.00005308 54.0
PJD3_k127_4194253_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 4.829e-285 889.0
PJD3_k127_4194253_1 heat shock protein binding - GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005515,GO:0006790,GO:0008150,GO:0008152,GO:0009058,GO:0009403,GO:0009404,GO:0009987,GO:0016002,GO:0016043,GO:0016491,GO:0016667,GO:0017144,GO:0019748,GO:0020037,GO:0022607,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044272,GO:0044550,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0051259,GO:0051260,GO:0055114,GO:0065003,GO:0070206,GO:0070207,GO:0070813,GO:0070814,GO:0071840,GO:0097159,GO:1901363,GO:1903136 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006288 406.0
PJD3_k127_4194253_2 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000000000000000000000000001151 197.0
PJD3_k127_4194253_3 PFAM 4Fe-4S ferredoxin K08358 - - 0.000000000000000000000006531 100.0
PJD3_k127_4198398_0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL-like protein K07303 - 1.3.99.16 1.314e-236 744.0
PJD3_k127_4198398_1 thiolester hydrolase activity K02614 - - 0.0000000000000000000000000000000000000000008787 160.0
PJD3_k127_4198398_2 Alpha beta hydrolase - - - 0.00000000000000002399 87.0
PJD3_k127_419963_0 PFAM carboxyl transferase K01615 - 4.1.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 512.0
PJD3_k127_419963_1 TIGRFAM acetoacetyl-CoA synthase K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004145 400.0
PJD3_k127_420098_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021 363.0
PJD3_k127_420098_1 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000005565 203.0
PJD3_k127_4212107_0 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 2.35e-206 655.0
PJD3_k127_4212107_1 VWA containing CoxE family protein K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 446.0
PJD3_k127_4246533_0 Protein of unknown function (DUF3750) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002036 269.0
PJD3_k127_4246533_1 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000003715 227.0
PJD3_k127_4246533_2 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000000000000000007015 209.0
PJD3_k127_4246533_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000008559 130.0
PJD3_k127_4246533_4 Ion channel - - - 0.00000000000000000000003144 102.0
PJD3_k127_4251980_0 PFAM UTP--glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 481.0
PJD3_k127_4251980_1 metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006896 367.0
PJD3_k127_4259410_0 Seven times multi-haem cytochrome CxxCH - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006037 312.0
PJD3_k127_4259410_1 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000002808 168.0
PJD3_k127_4259410_2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K16874 - - 0.000000000000000000000000000000000000007992 147.0
PJD3_k127_4259750_0 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003768 429.0
PJD3_k127_4259750_1 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 305.0
PJD3_k127_4259750_2 PFAM isochorismatase hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000009766 231.0
PJD3_k127_4259750_3 lactoylglutathione lyase activity - - - 0.0000000000000000000000000000003373 130.0
PJD3_k127_4259750_4 Thioesterase-like superfamily - - - 0.000000000000000000000000005323 125.0
PJD3_k127_4259750_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000001893 111.0
PJD3_k127_4259750_6 Forkhead associated domain - - - 0.0000000000000000000002686 114.0
PJD3_k127_4276926_0 Protein of unknown function (DUF1847) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008165 382.0
PJD3_k127_4276926_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008534,GO:0009987,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008803 353.0
PJD3_k127_4276926_2 ATPase associated with various cellular K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 313.0
PJD3_k127_4276926_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000009311 250.0
PJD3_k127_4276926_4 DsbA oxidoreductase - - - 0.0000000000000000000000000000000000000000007078 163.0
PJD3_k127_4281844_0 Mate efflux family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 411.0
PJD3_k127_4281844_1 PFAM ATPase associated with various cellular activities, AAA_3 K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 400.0
PJD3_k127_4288131_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005028 328.0
PJD3_k127_4288131_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002744 262.0
PJD3_k127_4288131_2 FAD dependent oxidoreductase K07137 - - 0.0000000000000000000000000000000438 138.0
PJD3_k127_4295111_0 Fis Family K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 614.0
PJD3_k127_4295111_1 His Kinase A (phosphoacceptor) domain K13587 - 2.7.13.3 0.00000000000000000000000000000000000002032 152.0
PJD3_k127_4305802_0 PFAM ABC transporter related - - - 2.93e-266 827.0
PJD3_k127_4305802_1 MgtC family K07507 GO:0008150,GO:0009405,GO:0044419,GO:0051704 - 0.0000000000000000000000000000000000000003082 162.0
PJD3_k127_4305802_2 ankyrin repeats K06867 - - 0.0000000000000000000000000000000000933 141.0
PJD3_k127_4305802_3 ubiE/COQ5 methyltransferase family - - - 0.00000000000000305 77.0
PJD3_k127_4321010_0 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000000000000000000000000000000000000000000000000000000002843 229.0
PJD3_k127_4321010_1 membrane - - - 0.000000000000000000000000000000000000000000002281 174.0
PJD3_k127_4321010_2 Uncharacterised protein family UPF0066 K01628 - 4.1.2.17 0.000000000000000000000000000000005649 135.0
PJD3_k127_4321010_3 Beta-lactamase superfamily domain - - - 0.0000000000000000000002626 98.0
PJD3_k127_4321010_4 isomerase activity K01821 - 5.3.2.6 0.000000000000000008475 83.0
PJD3_k127_4325825_0 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002953 502.0
PJD3_k127_4325825_1 PFAM major facilitator superfamily MFS_1 K08177 - - 0.00000000004867 74.0
PJD3_k127_4327197_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000009778 227.0
PJD3_k127_4327197_1 Pentapeptide repeats (8 copies) - - - 0.000003948 60.0
PJD3_k127_4339125_0 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002113 453.0
PJD3_k127_4339125_1 CO dehydrogenase flavoprotein C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000001425 213.0
PJD3_k127_4339125_2 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000114 196.0
PJD3_k127_4339125_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.0000000000000000000000000000000000549 138.0
PJD3_k127_4352629_0 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007874 438.0
PJD3_k127_4352629_1 ABC transporter, phosphonate, periplasmic substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 399.0
PJD3_k127_4352629_2 alginic acid biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000107 187.0
PJD3_k127_4363453_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009667 488.0
PJD3_k127_4363453_1 beta-galactosidase activity K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000001401 226.0
PJD3_k127_436672_0 Binding-protein-dependent transport system inner membrane component K02037,K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 535.0
PJD3_k127_436672_1 phosphate transport system K02038 - - 0.000000000000000000000000000000000194 136.0
PJD3_k127_437717_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 7.623e-295 919.0
PJD3_k127_437717_1 alpha/beta hydrolase fold - - - 0.0000000000000000000005335 99.0
PJD3_k127_4377859_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 7.417e-220 693.0
PJD3_k127_4377859_1 fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 495.0
PJD3_k127_4377859_2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K03496 - - 0.00000000005694 68.0
PJD3_k127_4401501_0 Cache domain K02482 - 2.7.13.3 5.83e-280 874.0
PJD3_k127_4401501_1 THUMP K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000003091 181.0
PJD3_k127_4401501_2 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000117 168.0
PJD3_k127_4404360_0 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 321.0
PJD3_k127_4404360_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002636 252.0
PJD3_k127_4404360_2 sister chromatid segregation - - - 0.00000000000000000000000000000000000000000000008624 174.0
PJD3_k127_4407864_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 334.0
PJD3_k127_4407864_1 two component, sigma54 specific, transcriptional regulator, Fis family K07714,K07715 - - 0.00000000000000000000000000000000000000000000000000000000004762 216.0
PJD3_k127_4407864_2 CheR methyltransferase, SAM binding domain K00575 - 2.1.1.80 0.00000000000000000000000000000000000005979 147.0
PJD3_k127_4412026_0 PFAM ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 419.0
PJD3_k127_4412026_1 Major Facilitator Superfamily K02445,K07783 - - 0.00000000000000000000000000106 117.0
PJD3_k127_4435883_0 belongs to the sigma-70 factor family - - - 0.000000000000000000000000000002053 135.0
PJD3_k127_4436899_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 9.309e-280 872.0
PJD3_k127_4436899_1 - - - - 0.0000000000000000000000000000006137 130.0
PJD3_k127_4436899_2 Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction - - - 0.0000000000000005018 78.0
PJD3_k127_4445115_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582,K16898 - 3.1.11.5,3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 462.0
PJD3_k127_4445713_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 4.178e-214 668.0
PJD3_k127_4445713_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.0000000000000000000000000000000000000000000000000000000000000000001112 234.0
PJD3_k127_4445713_2 Ribosomal protein L35 K02916 - - 0.00000000000001075 81.0
PJD3_k127_444871_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006065 555.0
PJD3_k127_444871_1 Pyruvate 2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 374.0
PJD3_k127_444871_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 314.0
PJD3_k127_444871_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000006832 246.0
PJD3_k127_444871_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000004284 171.0
PJD3_k127_444927_0 anaerobic respiration - - - 2.315e-307 956.0
PJD3_k127_4455168_0 Domain of unknown function - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 329.0
PJD3_k127_4455168_1 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007915 259.0
PJD3_k127_4455168_2 PFAM cobalamin (vitamin B12) biosynthesis CbiM protein K02007 - - 0.000000000000000000000000000000000000000000007733 166.0
PJD3_k127_4463865_0 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009598 297.0
PJD3_k127_4463865_1 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00001975 47.0
PJD3_k127_4465837_0 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 328.0
PJD3_k127_4465837_1 Patatin-like phospholipase K07001 - - 0.000000000000000000000000001062 120.0
PJD3_k127_450172_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 3.206e-225 706.0
PJD3_k127_450172_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 332.0
PJD3_k127_450172_2 PFAM YbbR family protein - - - 0.00000001057 64.0
PJD3_k127_4506714_0 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000148 243.0
PJD3_k127_4506714_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000672 175.0
PJD3_k127_4506714_2 PFAM nitrogen-fixing NifU domain protein - - - 0.0000000000000000000000000002141 115.0
PJD3_k127_4506714_3 - - - - 0.00000000000000000000003456 99.0
PJD3_k127_4506714_4 Tellurite resistance protein TehB - - - 0.000000000000000000000269 102.0
PJD3_k127_4507492_0 FAD binding domain K00239,K00278 - 1.3.5.1,1.3.5.4,1.4.3.16 3.355e-308 949.0
PJD3_k127_4507492_1 2Fe-2S iron-sulfur cluster binding domain protein - - - 0.00000000000000006007 81.0
PJD3_k127_4509561_0 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007928 511.0
PJD3_k127_4509561_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000007773 153.0
PJD3_k127_455566_0 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 608.0
PJD3_k127_455566_1 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000003252 200.0
PJD3_k127_455566_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000004636 179.0
PJD3_k127_4556411_0 denitrification pathway K02569,K21636 - 1.1.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000008132 272.0
PJD3_k127_4556411_1 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000002271 234.0
PJD3_k127_4556411_2 amine dehydrogenase activity K13730 - - 0.00000000000003459 74.0
PJD3_k127_4559515_0 Histidine Phosphotransfer domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005798 584.0
PJD3_k127_4559515_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000008756 216.0
PJD3_k127_4563037_0 TrwC relaxase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001822 257.0
PJD3_k127_4569745_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001279 289.0
PJD3_k127_4589683_0 acyl-coa dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007736 594.0
PJD3_k127_4589683_1 acyl-coa dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000002396 156.0
PJD3_k127_459033_0 AsmA-like C-terminal region K07289 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 564.0
PJD3_k127_459033_1 SMART Elongator protein 3 MiaB NifB K07139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 324.0
PJD3_k127_459033_2 PFAM Dynamin family - - - 0.00000000000000000000000000003992 120.0
PJD3_k127_4597170_0 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000001722 90.0
PJD3_k127_4597170_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000585 47.0
PJD3_k127_4597172_0 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005159 325.0
PJD3_k127_4597172_1 ABC transporter K02017 - 3.6.3.29 0.0000000000000000000000000000000000000000000000000000000000000000000001476 246.0
PJD3_k127_4597172_2 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.00000000000000000000000000000000000000000000000000000000006225 213.0
PJD3_k127_4606935_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 2.459e-199 626.0
PJD3_k127_4606935_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000001586 184.0
PJD3_k127_4616778_0 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000004791 206.0
PJD3_k127_4616778_1 PFAM Type IV pilus assembly PilZ - - - 0.000000000000000000000176 103.0
PJD3_k127_4616778_2 DUF1771-domain-containing protein - GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019205,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046404,GO:0046483,GO:0050896,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:1901360 - 0.00009766 53.0
PJD3_k127_461859_0 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 437.0
PJD3_k127_461859_1 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00177 - 1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000007488 267.0
PJD3_k127_4631159_0 Putative RNA methylase family UPF0020 K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 341.0
PJD3_k127_4631159_1 CoA binding domain - - - 0.000000000000000000000000000000000000000000000000003592 186.0
PJD3_k127_4631159_2 PFAM DinB family protein - - - 0.00000000000000000000000000000000000000000003078 166.0
PJD3_k127_4631159_3 Thrombospondin type 3 repeat - - - 0.0000000000000000000000000000000000000000004597 169.0
PJD3_k127_4631159_4 Protein conserved in bacteria K09954 - - 0.000000000000000000000005254 113.0
PJD3_k127_463170_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.535e-196 621.0
PJD3_k127_463170_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000004915 196.0
PJD3_k127_463170_2 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000011 113.0
PJD3_k127_4635056_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2220.0
PJD3_k127_4635056_1 Molydopterin dinucleotide binding domain K07306,K07309,K07310,K08352 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009390,GO:0009897,GO:0009986,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0032991,GO:0033797,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071944,GO:0098552,GO:0098567,GO:1902494 1.8.5.3,1.8.5.5,1.97.1.9 2.507e-292 915.0
PJD3_k127_4635056_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 3.678e-199 631.0
PJD3_k127_4635056_3 Type III restriction protein res subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003614 521.0
PJD3_k127_4635056_4 PFAM MscS Mechanosensitive ion channel K16053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006387 471.0
PJD3_k127_4635056_5 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000001647 134.0
PJD3_k127_4635719_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 364.0
PJD3_k127_4635719_1 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 319.0
PJD3_k127_4635719_2 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000002259 250.0
PJD3_k127_4635719_3 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000001897 217.0
PJD3_k127_467445_0 arginine decarboxylase K01585 - 4.1.1.19 2.516e-247 780.0
PJD3_k127_467445_1 Saccharopine dehydrogenase C-terminal domain K00290 - 1.5.1.7 2.218e-222 695.0
PJD3_k127_467445_2 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 - 4.1.1.96 6.597e-195 615.0
PJD3_k127_467445_3 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.000000003767 59.0
PJD3_k127_4680702_0 PFAM CoA-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000725 392.0
PJD3_k127_4680702_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 383.0
PJD3_k127_4682887_0 Bacterial protein of unknown function (DUF853) K06915 - - 3.312e-252 787.0
PJD3_k127_4682887_1 Thioesterase K18700 - 3.1.2.29 0.00000000000000000000000000000000000000000000000001118 182.0
PJD3_k127_4682887_2 - - - - 0.00000000000000000000000000001654 119.0
PJD3_k127_4682887_3 Protein of unknown function (DUF3307) - - - 0.0000000001829 71.0
PJD3_k127_4682887_4 SatD family (SatD) - - - 0.0000001776 59.0
PJD3_k127_4682887_5 SatD family (SatD) - - - 0.00009145 53.0
PJD3_k127_470970_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000003355 230.0
PJD3_k127_470970_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000006876 162.0
PJD3_k127_470970_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.0000000000000000000000000000000000001301 147.0
PJD3_k127_470970_3 Sigma-54 interaction domain - - - 0.000316 44.0
PJD3_k127_4718860_0 Periplasmic copper-binding protein (NosD) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 346.0
PJD3_k127_4718860_1 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000001412 211.0
PJD3_k127_4718860_2 Substrate binding domain of ABC-type glycine betaine transport system - - - 0.00000000000000000000000000000000000000000000000000006612 195.0
PJD3_k127_4718860_3 domain protein - - - 0.000000000000000000000000000000000000000000000000004092 183.0
PJD3_k127_4720295_0 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 8.742e-272 859.0
PJD3_k127_4749207_0 Belongs to the peptidase S16 family K01338,K04076,K04770 - 3.4.21.53 3.41e-216 681.0
PJD3_k127_475453_0 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 525.0
PJD3_k127_475453_1 tRNA synthetases class II (D, K and N) K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000003051 225.0
PJD3_k127_475453_2 Cyclic nucleotide-monophosphate binding domain K04739 - - 0.00000000000000000000000000000006064 128.0
PJD3_k127_4770045_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005944 586.0
PJD3_k127_4770045_1 KR domain K00023,K00059 - 1.1.1.100,1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 339.0
PJD3_k127_4771668_0 PFAM Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1176.0
PJD3_k127_4771668_1 Cysteine-rich domain - - - 0.00000000000000000000000000000005394 125.0
PJD3_k127_4785270_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004331 369.0
PJD3_k127_4785270_1 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000692 274.0
PJD3_k127_4785270_2 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000007264 184.0
PJD3_k127_4785270_3 peptide-methionine (S)-S-oxide reductase activity K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000001591 171.0
PJD3_k127_4785270_4 - - - - 0.00000000000000000000000000000001048 130.0
PJD3_k127_4785270_5 - - - - 0.000000000000000000000000005133 116.0
PJD3_k127_4785270_6 - - - - 0.00006045 46.0
PJD3_k127_4791232_0 Belongs to the ABC transporter superfamily K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 372.0
PJD3_k127_4791232_1 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000006557 207.0
PJD3_k127_4791232_2 Binding-protein-dependent transport system inner membrane component K02026,K10238 - - 0.0000000000000000000000000000000000000001961 151.0
PJD3_k127_4791232_3 type II secretion system protein E K02283 - - 0.00003883 50.0
PJD3_k127_4795421_0 Activator of Hsp90 ATPase 1 family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001151 246.0
PJD3_k127_4795421_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000009564 102.0
PJD3_k127_4795459_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 340.0
PJD3_k127_4795459_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000002794 218.0
PJD3_k127_4796084_0 PFAM Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 342.0
PJD3_k127_4796084_1 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000001524 160.0
PJD3_k127_4817569_0 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613 451.0
PJD3_k127_4817569_1 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202 429.0
PJD3_k127_4817569_2 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003233 246.0
PJD3_k127_4822896_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007605 461.0
PJD3_k127_4822896_1 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000004857 112.0
PJD3_k127_4845032_0 Cytochrome c554 and c-prime - - - 1.753e-208 662.0
PJD3_k127_4845032_1 Alpha/beta hydrolase family K06889 - - 0.0000000000000000000000000000000000000000000000000000007985 208.0
PJD3_k127_4845032_2 Belongs to the small heat shock protein (HSP20) family - - - 0.0000000000000000000000000000000000000000000007408 168.0
PJD3_k127_4845032_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000002018 53.0
PJD3_k127_4845032_4 Protein of unknown function (DUF3015) - - - 0.0000005188 54.0
PJD3_k127_4862824_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 2.324e-205 649.0
PJD3_k127_4862824_1 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 441.0
PJD3_k127_4862824_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006837 408.0
PJD3_k127_4869444_0 Histidine kinase K07716 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 338.0
PJD3_k127_4869444_1 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000007642 225.0
PJD3_k127_4869444_2 Histidine kinase - - - 0.00000000000000000000000000000000001894 140.0
PJD3_k127_4869776_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 490.0
PJD3_k127_4869776_1 - - - - 0.00000000000000000000000000000000000000000005957 168.0
PJD3_k127_4869820_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K13599 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009203 414.0
PJD3_k127_4874922_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042866,GO:0043436,GO:0043891,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 434.0
PJD3_k127_4874922_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000002034 265.0
PJD3_k127_4875871_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 292.0
PJD3_k127_4875871_1 cysteinyl-tRNA synthetase K01738,K01883,K12339 - 2.5.1.47,6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000003871 261.0
PJD3_k127_4881328_0 ATP-dependent helicase K03579 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006788 390.0
PJD3_k127_4881328_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 305.0
PJD3_k127_4881328_2 SMART Tetratricopeptide - - - 0.00000000000000000000000000000000000000000000000000000000000000006597 231.0
PJD3_k127_4889526_0 Molybdopterin-binding domain of aldehyde dehydrogenase - - - 5.431e-306 946.0
PJD3_k127_4889526_1 2Fe-2S iron-sulfur cluster binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000552 173.0
PJD3_k127_4897891_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 302.0
PJD3_k127_4897891_1 CRS1_YhbY K07574 - - 0.00000000000000000000006869 104.0
PJD3_k127_4897891_2 Uncharacterised protein family (UPF0270) K09898 - - 0.00000000000006728 82.0
PJD3_k127_4897891_3 PFAM CoA-binding domain protein K09181 - - 0.000000000003488 68.0
PJD3_k127_4901202_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 441.0
PJD3_k127_4901202_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002954 295.0
PJD3_k127_4915322_0 PFAM WD40 domain protein beta Propeller - - - 0.0000000000000000000000000000000000000000000000000000468 203.0
PJD3_k127_4920126_0 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 1.212e-286 893.0
PJD3_k127_4920126_1 TIGRFAM TRAP transporter solute receptor, TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 507.0
PJD3_k127_4920126_2 cation diffusion facilitator family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005651 347.0
PJD3_k127_4920126_3 PFAM EAL domain, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 317.0
PJD3_k127_4920126_4 Domain of unknown function (DUF1850) - - - 0.0000000000000000000000000000000000000000000000000000000000001577 217.0
PJD3_k127_4920126_5 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000003435 163.0
PJD3_k127_4920126_6 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000009022 160.0
PJD3_k127_49418_0 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) K05951 - 2.4.2.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 370.0
PJD3_k127_49418_1 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005583 342.0
PJD3_k127_49418_2 PFAM Binding-protein-dependent transport system inner membrane component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000134 277.0
PJD3_k127_49418_3 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.00000003595 56.0
PJD3_k127_4951351_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005552 338.0
PJD3_k127_4951351_1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 309.0
PJD3_k127_4951351_2 Psort location Cytoplasmic, score K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000001994 197.0
PJD3_k127_4951351_3 PFAM Hydantoinase B oxoprolinase K01474 - 3.5.2.14 0.000000000000000001626 85.0
PJD3_k127_4971568_0 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 522.0
PJD3_k127_4971568_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006247 435.0
PJD3_k127_4971568_2 PFAM Branched-chain amino acid transport system permease component K01997,K01998 - - 0.0004185 44.0
PJD3_k127_4974271_0 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 582.0
PJD3_k127_497886_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008017 582.0
PJD3_k127_497886_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000003813 214.0
PJD3_k127_4986818_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 333.0
PJD3_k127_4986818_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007339 326.0
PJD3_k127_4986818_2 COG0500 SAM-dependent methyltransferases - - - 0.00000000000000000000000000000000000004847 153.0
PJD3_k127_4988590_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 531.0
PJD3_k127_4988590_1 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 340.0
PJD3_k127_4988590_2 Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system K02074,K09817 - - 0.0000000000000000000000000000000000000000000000000000000000000000005729 243.0
PJD3_k127_4993693_0 Rhomboid family K19225 - 3.4.21.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 291.0
PJD3_k127_4993693_1 cog0421, spermidine synthase - - - 0.0000000000000000000000000000000000000000000000000000000000001495 219.0
PJD3_k127_4993693_2 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000007187 181.0
PJD3_k127_4993693_3 Predicted permease - - - 0.0000000000000000000000000000000000000000002171 161.0
PJD3_k127_4993693_4 COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding K03426 - 3.6.1.22 0.00000000000009936 78.0
PJD3_k127_5007237_0 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 8.393e-228 727.0
PJD3_k127_5007237_1 ABC transporter K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 509.0
PJD3_k127_5009795_0 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 501.0
PJD3_k127_5012898_0 Belongs to the ABC transporter superfamily K13896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006548 470.0
PJD3_k127_5012898_1 Binding-protein-dependent transport system inner membrane component K13895 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006857,GO:0008150,GO:0015833,GO:0015893,GO:0016020,GO:0035672,GO:0042221,GO:0042493,GO:0042884,GO:0042886,GO:0042891,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006056 291.0
PJD3_k127_5016603_0 UPF0210 protein K09157 - - 1.065e-221 694.0
PJD3_k127_5017766_0 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000001433 184.0
PJD3_k127_5019902_0 plastoquinone (Complex I) K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 347.0
PJD3_k127_5019902_1 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000001228 175.0
PJD3_k127_5019902_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000008802 143.0
PJD3_k127_5019902_3 NADH dehydrogenase - - - 0.00002278 48.0
PJD3_k127_5021001_0 Putative citrate transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000001679 249.0
PJD3_k127_5021001_1 membrane - - - 0.00000000000000000001958 94.0
PJD3_k127_5024135_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 319.0
PJD3_k127_502529_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 6.883e-239 747.0
PJD3_k127_502529_1 PFAM SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005827 304.0
PJD3_k127_502529_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0031647,GO:0036506,GO:0042026,GO:0042802,GO:0043167,GO:0043169,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0065007,GO:0065008 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 300.0
PJD3_k127_502529_3 chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000001295 165.0
PJD3_k127_502529_4 Protein of unknown function, DUF480 K09915 - - 0.00000000000000000008976 92.0
PJD3_k127_5029764_0 transposase IS116 IS110 IS902 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 333.0
PJD3_k127_5031904_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008446 401.0
PJD3_k127_5031904_1 Peptidase MA superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 337.0
PJD3_k127_5046179_0 SMART phosphoesterase PHP domain protein K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 323.0
PJD3_k127_5046179_1 translation release factor activity K03265 - - 0.0000000000000000000000000000000000000000000000000000000004528 208.0
PJD3_k127_505964_0 PFAM aminotransferase class V K00830,K00839 - 2.6.1.112,2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244 490.0
PJD3_k127_5065179_0 PFAM CheB methylesterase K13924 - 2.1.1.80,3.1.1.61 3.355e-200 638.0
PJD3_k127_5065179_1 PFAM CheB methylesterase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000004799 183.0
PJD3_k127_5065179_2 Methyltransferase, chemotaxis proteins K00575,K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000001007 95.0
PJD3_k127_5065987_0 PFAM sigma-54 factor interaction domain-containing protein K02481,K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007721 411.0
PJD3_k127_5065987_1 PFAM transglutaminase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 361.0
PJD3_k127_5065987_2 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 368.0
PJD3_k127_5065987_3 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000003826 109.0
PJD3_k127_5075640_0 PFAM AMP-dependent synthetase and ligase K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 487.0
PJD3_k127_5075640_1 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006433 428.0
PJD3_k127_5075640_2 Periplasmic binding protein K01999 - - 0.00000000000000003524 81.0
PJD3_k127_5092225_0 Belongs to the 5'-nucleotidase family K01119 - 3.1.3.6,3.1.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000336 313.0
PJD3_k127_5092225_1 denitrification pathway - - - 0.000001301 51.0
PJD3_k127_5110968_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1791.0
PJD3_k127_511101_0 PFAM ROSMUCR transcriptional regulator - - - 0.000000000000000004582 85.0
PJD3_k127_511101_1 Type II secretion system protein B - - - 0.0000000003796 70.0
PJD3_k127_511101_2 reverse transcriptase - - - 0.00002259 49.0
PJD3_k127_5113550_0 PFAM inner-membrane translocator K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004966 560.0
PJD3_k127_5113550_1 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008676 391.0
PJD3_k127_5113550_2 Periplasmic binding protein K01999 - - 0.0000000000000000000001312 102.0
PJD3_k127_5147216_0 PFAM Coenzyme A transferase K01039 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 532.0
PJD3_k127_5147216_1 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001186 247.0
PJD3_k127_5147216_2 PFAM Coenzyme A transferase K01040 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000001199 213.0
PJD3_k127_5151343_0 Histidine kinase A domain protein - - - 0.0 1403.0
PJD3_k127_5151343_1 Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit K00595 - 2.1.1.132 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 479.0
PJD3_k127_5151343_2 EXOIII K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 436.0
PJD3_k127_5151343_3 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 437.0
PJD3_k127_5151343_4 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K05936 - 2.1.1.133,2.1.1.271 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005047 405.0
PJD3_k127_5151343_5 PFAM Precorrin-8X methylmutase CbiC CobH K06042 - 5.4.99.60,5.4.99.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000001601 274.0
PJD3_k127_5151343_6 PFAM cobalamin (vitamin B12) biosynthesis CbiG K02189 - 3.7.1.12 0.0000000000000000000000000000000000000000003263 162.0
PJD3_k127_5151343_7 CbiX - - - 0.000000000000000000002117 100.0
PJD3_k127_5151343_8 - - - - 0.00004901 49.0
PJD3_k127_5168346_0 N-methylhydantoinase A acetone carboxylase, beta subunit K01469 - 3.5.2.9 3.316e-234 734.0
PJD3_k127_5168346_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 485.0
PJD3_k127_5168346_2 Putative transmembrane protein (PGPGW) - - - 0.00000000000000000000000000000000000000003084 156.0
PJD3_k127_5175279_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1114.0
PJD3_k127_5179431_0 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002762 517.0
PJD3_k127_5179431_1 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006167 381.0
PJD3_k127_5179431_2 TIGRFAM phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 353.0
PJD3_k127_5179431_3 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 323.0
PJD3_k127_5179431_4 MreB/Mbl protein - - - 0.00008471 54.0
PJD3_k127_5180768_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000496 391.0
PJD3_k127_5180768_1 PFAM Three-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 369.0
PJD3_k127_5180768_2 Domain of unknown function (DUF374) K09778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001416 246.0
PJD3_k127_5180768_3 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000001009 196.0
PJD3_k127_5180922_0 polyketide synthase K12436 - - 8.271e-208 666.0
PJD3_k127_5184248_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1058.0
PJD3_k127_5184248_1 Peptidoglycan-binding domain 1 protein K08305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 401.0
PJD3_k127_5187519_0 Protein of unknwon function (DUF3310) - - - 0.000003989 49.0
PJD3_k127_5187519_1 DNA N-6-adenine-methyltransferase (Dam) - - - 0.00001842 54.0
PJD3_k127_5187519_2 DNA polymerase family A K02335 GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.000495 51.0
PJD3_k127_5189827_0 PFAM Branched-chain amino acid transport system permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 512.0
PJD3_k127_5189827_1 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 326.0
PJD3_k127_5189827_2 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001878 258.0
PJD3_k127_5190598_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001859 286.0
PJD3_k127_5190598_1 PFAM Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000004088 168.0
PJD3_k127_5194635_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000889 193.0
PJD3_k127_5194635_1 transferase activity, transferring glycosyl groups K01014 - 2.8.2.1 0.00000000000000000000000000000002451 143.0
PJD3_k127_5199348_0 TIGRFAM Flagellar hook-associated protein, FlgK K02396 - - 0.0000000000000000000000000000000000000004456 152.0
PJD3_k127_5203702_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 5.458e-201 628.0
PJD3_k127_5203702_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000007721 219.0
PJD3_k127_521598_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 314.0
PJD3_k127_521598_1 Bacterial transglutaminase-like N-terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000005025 229.0
PJD3_k127_5217239_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003275 478.0
PJD3_k127_5217239_1 type IV pilus modification protein PilV K02459,K02671 - - 0.000000000000000000000000013 113.0
PJD3_k127_5219283_0 fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005501 307.0
PJD3_k127_5219283_1 NAD(P)H dehydrogenase (quinone) activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001515 278.0
PJD3_k127_5227690_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 370.0
PJD3_k127_5227690_1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 294.0
PJD3_k127_5227690_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000002698 240.0
PJD3_k127_5227690_3 Caspase domain - - - 0.000000000000000000000000000000000000000000000000001678 196.0
PJD3_k127_5227690_4 Peptidase family M23 - - - 0.00000000000000000000000000000000000007818 154.0
PJD3_k127_5227690_5 PFAM conserved K06966 - 3.2.2.10 0.00000000000000000000000000000000001242 138.0
PJD3_k127_5230914_0 Rubrerythrin - - - 0.0000000000000000000000000000000000000002785 156.0
PJD3_k127_5230914_1 PFAM Cupin 2 conserved barrel domain protein - - - 0.00000000000000000000000000000000000000802 148.0
PJD3_k127_5230914_2 Lysin motif - - - 0.0000000000000003792 91.0
PJD3_k127_5233442_0 Putative Fe-S cluster K03616 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 405.0
PJD3_k127_5233442_1 Rnf-Nqr subunit, membrane protein K03617 - - 0.000000000000000000000000000000000000000000000000000000000000000000003923 237.0
PJD3_k127_5242766_0 TIGRFAM CoA-substrate-specific enzyme activase - - - 0.000000000000000000000000000000000000402 151.0
PJD3_k127_5246196_2 unfolded protein binding K18640 - - 0.0000000000000000000000000000000000005131 155.0
PJD3_k127_5246196_3 unfolded protein binding K18640 - - 0.000000000000000000000000000006069 119.0
PJD3_k127_5246196_4 Protein of unknown function (DUF1257) - - - 0.00000000000000000000000007792 107.0
PJD3_k127_5262526_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003557 349.0
PJD3_k127_5262526_1 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 304.0
PJD3_k127_5267904_0 PFAM GTP-binding signal recognition particle SRP54 G- domain K02404 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 491.0
PJD3_k127_5267904_1 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008822 281.0
PJD3_k127_5267904_2 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000001123 143.0
PJD3_k127_5268845_0 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002343 274.0
PJD3_k127_5268845_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006891 256.0
PJD3_k127_5268845_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000002179 91.0
PJD3_k127_5270552_1 cell adhesion involved in biofilm formation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 360.0
PJD3_k127_5270552_2 TIGRFAM cytochrome C family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001133 273.0
PJD3_k127_5274759_0 Amino acid permease K16238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000796 312.0
PJD3_k127_5274759_1 Belongs to the glutaminase family K01425 - 3.5.1.2 0.000000000000000000000000000000000000000000000000000000000000002155 223.0
PJD3_k127_5275484_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 434.0
PJD3_k127_5275484_1 PFAM von Willebrand factor type A domain K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 354.0
PJD3_k127_5275484_2 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001545 315.0
PJD3_k127_5275484_3 Chitobiase/beta-hexosaminidase C-terminal domain - - - 0.00000000000000000000000000000000000007303 160.0
PJD3_k127_5275484_4 PFAM von Willebrand factor type A domain K07114 - - 0.000000000000000000000000000000002914 134.0
PJD3_k127_5287801_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 481.0
PJD3_k127_5287801_1 SEC-C Motif Domain Protein - - - 0.000000000000000000000000000000000000000000000000000002991 199.0
PJD3_k127_5287801_2 Cold shock protein domain K03704 - - 0.00000000000000000000000008827 111.0
PJD3_k127_5287801_3 Glutathione peroxidase - - - 0.0000000000000003548 86.0
PJD3_k127_5291271_0 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005355 432.0
PJD3_k127_5291271_1 metal-binding protein - - - 0.00000000000000000000000000006408 124.0
PJD3_k127_5291382_0 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003029 271.0
PJD3_k127_5291382_1 4Fe-4S binding domain K00124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003335 251.0
PJD3_k127_5291777_0 His Kinase A (phosphoacceptor - - - 0.0000000000000000000000000000000000000000000000000000000000000001948 244.0
PJD3_k127_5291777_1 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 GO:0003674,GO:0003824,GO:0006040,GO:0006044,GO:0006046,GO:0008150,GO:0008152,GO:0008448,GO:0009056,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0046348,GO:0071704,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901575 3.5.4.2 0.000000000000000000000000000000000000000000002353 175.0
PJD3_k127_5291777_2 - - - - 0.000000000000003135 78.0
PJD3_k127_5291777_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00001727 54.0
PJD3_k127_5294134_0 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 332.0
PJD3_k127_5294134_1 NADH pyrophosphatase zinc ribbon domain K03426 - 3.6.1.22 0.000000000000000000000000000000000000002066 150.0
PJD3_k127_5294134_2 - - - - 0.00000000000000000000000000000000001699 152.0
PJD3_k127_5294134_3 SprA-related family - - - 0.00000000003069 76.0
PJD3_k127_5294229_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 2.06e-268 841.0
PJD3_k127_5294229_2 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.000000008631 57.0
PJD3_k127_5308688_0 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007098 501.0
PJD3_k127_5308688_1 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004051 226.0
PJD3_k127_5308688_2 Peptidase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000004554 188.0
PJD3_k127_5308688_3 Tautomerase enzyme K01821 - 5.3.2.6 0.000000000009878 69.0
PJD3_k127_5308688_4 4Fe-4S binding domain - - - 0.00000000005717 73.0
PJD3_k127_5314042_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 - 3.6.3.14,3.6.3.15 6.166e-235 737.0
PJD3_k127_5314042_1 Protein of unknown function (DUF2764) - - - 0.000000000000000000000000000000000000000000001179 175.0
PJD3_k127_5314042_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.000000000000002742 78.0
PJD3_k127_5321184_0 Poly A polymerase, head domain K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 434.0
PJD3_k127_5321184_1 Protein of unknown function, DUF481 K07283 - - 0.00000000000000000000000000000000000000000000000000000000000000000003406 241.0
PJD3_k127_5321184_2 nucleic acid-binding protein contains PIN domain K18828 - - 0.00000000000000000000000000000000000000000000000001618 183.0
PJD3_k127_5321184_3 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000000000000003541 84.0
PJD3_k127_5321184_4 Transposase DDE domain - - - 0.000000000001206 71.0
PJD3_k127_5321184_5 Arm DNA-binding domain K14059 - - 0.00005527 51.0
PJD3_k127_5331353_0 COG0463 Glycosyltransferases involved in cell wall biogenesis K13693 - 2.4.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602 396.0
PJD3_k127_5331353_1 HAD-superfamily hydrolase, subfamily IIB K07026 - 3.1.3.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 344.0
PJD3_k127_5331353_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000006982 269.0
PJD3_k127_5332443_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 2.765e-243 766.0
PJD3_k127_5332443_1 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 509.0
PJD3_k127_5332443_2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus K00441,K21231 - 1.12.98.1,1.3.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 323.0
PJD3_k127_5332443_3 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000000000000000000000000000000000001939 148.0
PJD3_k127_5341875_0 General secretory system II, protein E domain protein K02454 - - 7.739e-259 812.0
PJD3_k127_5341875_1 - - - - 0.000000000000000000000000000000000000000000001336 189.0
PJD3_k127_5341875_2 PilX N-terminal - - - 0.0000000000004472 81.0
PJD3_k127_5341875_3 type IV pilus modification protein PilV K02458,K02671 - - 0.0000003542 61.0
PJD3_k127_5341875_4 protein transport across the cell outer membrane K02246,K08084 - - 0.000002621 59.0
PJD3_k127_5346589_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 407.0
PJD3_k127_5346589_1 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 394.0
PJD3_k127_5346589_2 N-acetylmuramoyl-L-alanine amidase K01447 - 3.5.1.28 0.0007843 43.0
PJD3_k127_5364515_0 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 467.0
PJD3_k127_5364515_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 304.0
PJD3_k127_5367565_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 5.39e-296 914.0
PJD3_k127_5367565_1 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006602 544.0
PJD3_k127_5367565_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004845 444.0
PJD3_k127_5367565_3 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 429.0
PJD3_k127_5367565_4 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007578 422.0
PJD3_k127_5367565_5 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 328.0
PJD3_k127_5367565_6 PFAM 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000004551 175.0
PJD3_k127_5367565_7 peptidyl-prolyl cis-trans isomerase activity K00645,K02597,K03769,K03771 - 2.3.1.39,5.2.1.8 0.00000000000000000000000000000006028 133.0
PJD3_k127_5372218_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 3.547e-224 717.0
PJD3_k127_5372218_1 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001177 283.0
PJD3_k127_5374380_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 2.003e-218 692.0
PJD3_k127_5374380_1 Chemotaxis phosphatase CheX K03409 - - 0.000000000000000000000000000000000000000000000000000001277 198.0
PJD3_k127_5374380_2 Serine aminopeptidase, S33 K06889 - - 0.0000000000000000000000000000000000000000874 156.0
PJD3_k127_5374380_3 - - - - 0.000000000000006032 80.0
PJD3_k127_5376605_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 429.0
PJD3_k127_5376605_1 phosphohistidine phosphatase K08296 - - 0.00000000000003301 74.0
PJD3_k127_5387316_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000007707 168.0
PJD3_k127_5395773_0 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 388.0
PJD3_k127_5395773_1 DNA-binding transcription factor activity K21903 - - 0.0000000000000000000000000000000001456 137.0
PJD3_k127_5398697_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.595e-223 709.0
PJD3_k127_5398697_1 FAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005697 608.0
PJD3_k127_5398697_2 radical SAM domain protein K04070 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 440.0
PJD3_k127_5398697_3 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009085 273.0
PJD3_k127_5406513_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 538.0
PJD3_k127_5406513_1 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008376 393.0
PJD3_k127_5406513_2 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000001371 241.0
PJD3_k127_5412473_0 PFAM magnesium chelatase ChlI subunit K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 565.0
PJD3_k127_5417303_0 RNase_H superfamily K07502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 355.0
PJD3_k127_5417303_2 DEAD DEAH box helicase K06877 - - 0.00000000000000000007515 91.0
PJD3_k127_5417303_3 Sodium/hydrogen exchanger family - - - 0.0000000000322 70.0
PJD3_k127_5422972_0 Nucleoside recognition K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000872 448.0
PJD3_k127_542536_0 AAA domain K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 443.0
PJD3_k127_542536_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000002356 135.0
PJD3_k127_5434810_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 521.0
PJD3_k127_5434810_1 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 371.0
PJD3_k127_5446253_0 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009853 521.0
PJD3_k127_5446253_2 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose - - - 0.0000000000000000001222 102.0
PJD3_k127_5456362_0 ABC-2 type transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006694 464.0
PJD3_k127_5456362_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002607 281.0
PJD3_k127_5456362_2 Cys Met metabolism K01739,K01760 - 2.5.1.48,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000003595 259.0
PJD3_k127_545986_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 8.468e-227 722.0
PJD3_k127_545986_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0001959 44.0
PJD3_k127_5465473_0 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006977 457.0
PJD3_k127_5466296_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 574.0
PJD3_k127_5466296_1 Formiminotransferase-cyclodeaminase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 316.0
PJD3_k127_5476084_0 ImcF-related N-terminal domain K11891 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 330.0
PJD3_k127_5483057_0 COG1335 Amidases related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000000001213 230.0
PJD3_k127_5483057_1 Cold shock protein domain K03704 - - 0.00000000000000000000000001787 110.0
PJD3_k127_5483057_2 domain protein - - - 0.00001543 51.0
PJD3_k127_5496882_0 PFAM ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 292.0
PJD3_k127_5496882_1 TIGRFAM Pyridine nucleotide-disulfide oxidoreductase family protein - - - 0.00004577 51.0
PJD3_k127_5511106_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 306.0
PJD3_k127_5512309_0 Pyridine nucleotide-disulphide oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 553.0
PJD3_k127_5516159_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 1.252e-198 642.0
PJD3_k127_5516159_1 ABC-type branched-chain amino acid transport systems ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 308.0
PJD3_k127_5519362_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.000000000000000000000000000000000000000000000000000000000000000000000002453 252.0
PJD3_k127_5519362_1 PFAM Peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000004201 226.0
PJD3_k127_5521015_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000002893 194.0
PJD3_k127_5521015_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000007974 129.0
PJD3_k127_5521015_2 4Fe-4S dicluster domain - - - 0.00000000000000001162 91.0
PJD3_k127_5521585_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 477.0
PJD3_k127_5521585_1 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000007599 94.0
PJD3_k127_5532389_0 Displays ATPase and GTPase activities K06958 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 419.0
PJD3_k127_5532389_1 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 387.0
PJD3_k127_5532389_2 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000000000000000000000000000000000000000002253 224.0
PJD3_k127_5532389_3 PFAM PTS system fructose subfamily IIA component K02793 - 2.7.1.191 0.00000000000000000000000000000000000002964 147.0
PJD3_k127_5532389_4 system, mannose fructose sorbose family, IID component K02796 - - 0.000000000000000000000000000000000001701 154.0
PJD3_k127_5532389_5 PFAM PTS system sorbose subfamily IIB component K02794 - 2.7.1.191 0.00000000000000000000000000000001571 132.0
PJD3_k127_5532389_6 PTS system sorbose-specific iic component K02795 - - 0.0000000000000003437 91.0
PJD3_k127_5536879_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944 1.6.5.3 1.746e-196 618.0
PJD3_k127_5536879_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 293.0
PJD3_k127_5536879_2 PFAM NADH dehydrogenase (ubiquinone), 30 kDa subunit K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000009227 188.0
PJD3_k127_5548490_0 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008516 302.0
PJD3_k127_5548490_1 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000000003496 103.0
PJD3_k127_5548490_2 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000004176 92.0
PJD3_k127_5548490_3 denitrification pathway - - - 0.0009591 51.0
PJD3_k127_5555740_0 peptidase M42 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008785 273.0
PJD3_k127_5555740_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000000000000000000074 231.0
PJD3_k127_5555740_2 PFAM Positive regulator of sigma(E) RseC MucC K03803 - - 0.000000000000000000000000000000003262 138.0
PJD3_k127_5555740_3 reverse transcriptase - - - 0.00002419 46.0
PJD3_k127_5557267_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 1.756e-252 788.0
PJD3_k127_5557267_1 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000002253 255.0
PJD3_k127_5557267_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000002324 134.0
PJD3_k127_5568830_0 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000135 215.0
PJD3_k127_5568830_1 Late competence development protein ComFB K02241 - - 0.000000005482 62.0
PJD3_k127_5588373_0 PFAM Asparaginase K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000005065 216.0
PJD3_k127_5588373_1 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000164 190.0
PJD3_k127_5588373_2 Iron-sulfur cluster-binding domain - - - 0.000000000000000000000000000000000000000000000003112 173.0
PJD3_k127_5592252_0 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 505.0
PJD3_k127_5592252_1 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000005209 137.0
PJD3_k127_5592252_2 cold-shock protein K03704 - - 0.0000000000000000000000000009157 118.0
PJD3_k127_5592252_3 - - - - 0.00000000000000000000000002324 115.0
PJD3_k127_5592252_4 TIGRFAM channel protein, hemolysin III family K11068 - - 0.000000000000000000004457 93.0
PJD3_k127_5596674_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 374.0
PJD3_k127_5597867_0 TIGRFAM LAO AO transport system ATPase K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002827 493.0
PJD3_k127_5597867_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 486.0
PJD3_k127_5606218_0 PFAM Glu Leu Phe Val dehydrogenase K15371 - 1.4.1.2 0.0 1353.0
PJD3_k127_5606218_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 1.872e-207 660.0
PJD3_k127_5610528_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007311 595.0
PJD3_k127_5610528_1 Serine aminopeptidase, S33 K06889 - - 0.0000000000002213 73.0
PJD3_k127_5613004_0 Histidine kinase - - - 0.0000000000000000000000000000007184 140.0
PJD3_k127_5623306_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004997 383.0
PJD3_k127_5623306_1 PFAM cobalamin B12-binding domain protein K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000000000004463 224.0
PJD3_k127_5623306_2 Protein of unknown function (DUF2889) K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000005568 203.0
PJD3_k127_5623306_3 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000002234 190.0
PJD3_k127_5623306_4 - - - - 0.0000000000000000000000000000000000001174 148.0
PJD3_k127_5626004_0 branched-chain amino acid permease (azaleucine resistance) - - - 0.0000000000000000000000000000000000000000000000000000000000002125 222.0
PJD3_k127_5626004_1 DsrE/DsrF-like family - - - 0.000000000000000000000000000000000000000178 151.0
PJD3_k127_5626004_2 Branched-chain amino acid transport protein (AzlD) - - - 0.000000000000000002767 93.0
PJD3_k127_5632183_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001629 282.0
PJD3_k127_5632183_1 Nucleotidyl transferase K00966 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002009 275.0
PJD3_k127_5632183_2 Tetratricopeptide repeat - - - 0.000000000000003248 81.0
PJD3_k127_5633815_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005912 355.0
PJD3_k127_5633815_1 elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000004411 118.0
PJD3_k127_5633815_2 RNA polymerase-binding protein DksA K06204 - - 0.00000000000000000000000009949 110.0
PJD3_k127_5635624_0 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016020,GO:0016491,GO:0022900,GO:0030312,GO:0040007,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 311.0
PJD3_k127_5635624_1 Electron transfer flavoprotein FAD-binding domain K03522 - - 0.00000000000000000000000000000000000000000000000002748 186.0
PJD3_k127_5635624_2 Protein-disulfide isomerase - - - 0.000000000000000000000000000000000000000000003008 167.0
PJD3_k127_5635624_3 PFAM peptidase M1, membrane alanine aminopeptidase - - - 0.00000000000000000001286 94.0
PJD3_k127_5635624_4 Thioredoxin - - - 0.0000000000287 70.0
PJD3_k127_564729_0 PFAM TrkA-N domain protein K03499 - - 1.779e-194 623.0
PJD3_k127_564729_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006352 415.0
PJD3_k127_564729_2 PilZ domain - - - 0.000000000000000000000000000000000003514 148.0
PJD3_k127_5647309_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 334.0
PJD3_k127_5647309_1 protein heterodimerization activity - - - 0.0000000000000000000009851 102.0
PJD3_k127_5656552_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001493 261.0
PJD3_k127_5656552_1 Transketolase K00615 GO:0000287,GO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005999,GO:0006081,GO:0006098,GO:0006139,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009058,GO:0009117,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0016020,GO:0016051,GO:0016604,GO:0016607,GO:0016740,GO:0016744,GO:0019219,GO:0019222,GO:0019321,GO:0019322,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0019842,GO:0030246,GO:0030976,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0031984,GO:0033043,GO:0033044,GO:0034641,GO:0036094,GO:0040008,GO:0042175,GO:0042579,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046166,GO:0046184,GO:0046364,GO:0046390,GO:0046483,GO:0046496,GO:0046872,GO:0046983,GO:0048029,GO:0048037,GO:0050662,GO:0050789,GO:0050794,GO:0051128,GO:0051156,GO:0051171,GO:0051186,GO:0051252,GO:0055086,GO:0060255,GO:0060968,GO:0065007,GO:0070013,GO:0071704,GO:0072524,GO:0080090,GO:0090407,GO:0097159,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901681,GO:1902275,GO:1903506,GO:2000112,GO:2001141 2.2.1.1 0.000000000009154 69.0
PJD3_k127_5671070_0 PFAM EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 301.0
PJD3_k127_5671070_1 PFAM flavin reductase domain protein FMN-binding - - - 0.0000000000000000000000000000000000000000000000000000000000003935 217.0
PJD3_k127_567972_1 Domain of unknown function (DUF4150) - - - 0.000000000000003467 81.0
PJD3_k127_567972_2 PFAM pentapeptide repeat protein - - - 0.00000000005789 70.0
PJD3_k127_5685377_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005743 433.0
PJD3_k127_5685377_1 PFAM 4Fe-4S - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 314.0
PJD3_k127_5685474_0 diguanylate cyclase K19707,K21088 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042802,GO:0043900,GO:0043902,GO:0044093,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051171,GO:0051252,GO:0052621,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:1900190,GO:1900192,GO:1900231,GO:1900233,GO:1903506,GO:2000112,GO:2001141 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006649 366.0
PJD3_k127_5687858_0 PFAM NADH Ubiquinone plastoquinone (complex I) K05568,K12137 - - 3.491e-265 833.0
PJD3_k127_5687858_1 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 1.559e-242 756.0
PJD3_k127_5687858_2 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 5.173e-241 757.0
PJD3_k127_5687858_3 - - - - 0.0000000000000000000000142 116.0
PJD3_k127_5688315_0 COG0513 Superfamily II DNA and RNA helicases K17675 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001688 346.0
PJD3_k127_5694741_0 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 404.0
PJD3_k127_5694741_1 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000002394 260.0
PJD3_k127_5694741_2 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000000000273 70.0
PJD3_k127_5695116_0 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family K18359 - 1.2.1.58 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 371.0
PJD3_k127_5695116_2 4Fe-4S dicluster domain - - - 0.000176 44.0
PJD3_k127_5695359_0 Protein of unknown function (DUF1186) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 385.0
PJD3_k127_5695359_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006656 322.0
PJD3_k127_5695359_2 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 314.0
PJD3_k127_5695359_3 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000000003607 243.0
PJD3_k127_5695359_4 NUDIX domain K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000001961 209.0
PJD3_k127_5695359_5 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000005273 166.0
PJD3_k127_5697884_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000744 336.0
PJD3_k127_5697884_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.00000000000000001962 88.0
PJD3_k127_569949_0 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006942 356.0
PJD3_k127_569949_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002615 267.0
PJD3_k127_572688_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000105 279.0
PJD3_k127_5737227_0 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000002812 229.0
PJD3_k127_5737227_1 TonB C terminal K03832 - - 0.000000000000000000000000000000000000002838 158.0
PJD3_k127_5737227_2 - - - - 0.0000000003534 64.0
PJD3_k127_5739926_0 PFAM Glu Leu Phe Val dehydrogenase K15371 - 1.4.1.2 6.603e-262 821.0
PJD3_k127_5745169_0 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000005596 204.0
PJD3_k127_5745169_1 phosphorelay signal transduction system K07714 - - 0.0000000000000000000005784 103.0
PJD3_k127_5745169_2 - - - - 0.0003596 49.0
PJD3_k127_5753930_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000000000000000000004162 195.0
PJD3_k127_5753930_1 PGAP1-like protein - - - 0.0000000000000000000001397 107.0
PJD3_k127_5753930_2 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000005234 69.0
PJD3_k127_5758978_0 elongation factor Tu domain 2 protein K06207 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000528 391.0
PJD3_k127_5758978_1 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000000008756 113.0
PJD3_k127_5758978_2 Tellurite resistance protein TerB K05801 - - 0.00000000000000000001551 92.0
PJD3_k127_5762278_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134,K03472 - 1.2.1.12,1.2.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 454.0
PJD3_k127_5762278_1 Bacterial regulatory proteins, tetR family K03577 - - 0.0000000000000000000000000001048 124.0
PJD3_k127_5762278_2 Aminotransferase class I and II K00813,K00832 GO:0003674,GO:0003824,GO:0004069,GO:0004838,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006558,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0019438,GO:0019752,GO:0019842,GO:0030170,GO:0033585,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0070279,GO:0070547,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223 2.6.1.1,2.6.1.57 0.00000000000000006696 85.0
PJD3_k127_5764128_0 PFAM aminoacyl-tRNA synthetase class Ib K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002017 497.0
PJD3_k127_5764128_1 TIGRFAM SagB-type dehydrogenase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 300.0
PJD3_k127_5764128_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000001449 50.0
PJD3_k127_5766422_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 6.445e-226 707.0
PJD3_k127_5771344_0 Sigma-54 interaction domain K02584 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004757 512.0
PJD3_k127_5773444_0 PFAM MMPL family K07003 - - 0.0 1215.0
PJD3_k127_5773444_1 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001277 283.0
PJD3_k127_5773444_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004035 251.0
PJD3_k127_5773444_3 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000324 263.0
PJD3_k127_5773444_4 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000004093 160.0
PJD3_k127_5781776_0 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000006038 226.0
PJD3_k127_5783495_0 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 4.686e-246 763.0
PJD3_k127_5783495_1 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003924 366.0
PJD3_k127_5786045_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1056.0
PJD3_k127_5786045_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000006162 234.0
PJD3_k127_5789090_0 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000001429 194.0
PJD3_k127_5789090_1 YGGT family K02221 - - 0.000000000000000000000000000000000000000003074 164.0
PJD3_k127_5789090_2 regulation of cell shape K04074,K06997 - - 0.00000000000000000000000000000000000000004018 160.0
PJD3_k127_5789090_3 Belongs to the UPF0235 family K09131 - - 0.00000000000000000000000001446 113.0
PJD3_k127_5802464_0 Domain of unknown function (DUF362) K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 418.0
PJD3_k127_5806964_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 6.67e-206 648.0
PJD3_k127_5806964_1 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002904 252.0
PJD3_k127_5806964_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000001563 226.0
PJD3_k127_5806964_3 Hydrolases of the alpha beta superfamily K06889,K07397 - - 0.00000000008335 66.0
PJD3_k127_5807397_0 peroxiredoxin activity K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000000000000000000000000000000000000000000000000000000003423 202.0
PJD3_k127_5807397_1 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000001548 171.0
PJD3_k127_5807397_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding - - - 0.0000000000005573 74.0
PJD3_k127_5807397_3 PFAM Glycosyl transferase family 2 - - - 0.000000002268 61.0
PJD3_k127_5810785_0 PFAM aminotransferase class V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 495.0
PJD3_k127_5810785_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000001164 214.0
PJD3_k127_5812389_0 glutamate synthase - - - 2.358e-205 646.0
PJD3_k127_5812389_1 PFAM Amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 447.0
PJD3_k127_5812389_2 Belongs to the glutamate synthase family K00265 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000003878 131.0
PJD3_k127_5814886_0 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006607 411.0
PJD3_k127_5814886_2 Adenylate cyclase - - - 0.0004013 49.0
PJD3_k127_5831216_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 356.0
PJD3_k127_5831216_1 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 310.0
PJD3_k127_5831216_2 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 299.0
PJD3_k127_5833870_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 390.0
PJD3_k127_5833870_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 350.0
PJD3_k127_5833870_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002058 274.0
PJD3_k127_5833870_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000136 232.0
PJD3_k127_5833870_4 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000000000151 239.0
PJD3_k127_5837187_0 PFAM Ketose-bisphosphate aldolase, class-II K01624 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 471.0
PJD3_k127_5837187_1 DAHP synthetase I family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000009172 242.0
PJD3_k127_583779_0 PFAM chemotaxis sensory transducer - - - 2.72e-200 638.0
PJD3_k127_583779_1 ATP-binding region ATPase domain protein K03407,K13490 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005296 626.0
PJD3_k127_583779_2 GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 447.0
PJD3_k127_583779_3 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008995 420.0
PJD3_k127_583779_4 Two component signalling adaptor domain K03408 - - 0.000000000000000000000000000000114 127.0
PJD3_k127_583779_5 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000002427 55.0
PJD3_k127_5848558_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000001049 198.0
PJD3_k127_5848558_2 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000001364 81.0
PJD3_k127_5860786_0 - - - - 0.00000000000000000001843 93.0
PJD3_k127_5860786_1 RNA recognition motif - - - 0.00000000000000003493 92.0
PJD3_k127_5860786_2 - - - - 0.00000000000000004049 83.0
PJD3_k127_5860786_3 EamA-like transporter family K05786 - - 0.00000003861 56.0
PJD3_k127_5862736_0 Phosphoglucose isomerase K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000217 505.0
PJD3_k127_5862736_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008056 360.0
PJD3_k127_5862736_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K13810 - 2.2.1.2,5.3.1.9 0.000000000000000000000000000000000000000000000000000000323 198.0
PJD3_k127_5862960_0 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 440.0
PJD3_k127_5862960_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 451.0
PJD3_k127_5862960_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 391.0
PJD3_k127_5862960_3 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029,K02030 - - 0.0000000000000000000000000000000000000000005888 160.0
PJD3_k127_5862960_4 - - - - 0.000000000000000000008143 96.0
PJD3_k127_5866351_0 peroxiredoxin activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 384.0
PJD3_k127_5866351_1 actin binding - - - 0.0000000000000000000000000000000000000000000002747 171.0
PJD3_k127_5866351_2 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0000000000000002341 93.0
PJD3_k127_5877830_0 Cys Met metabolism pyridoxal-phosphate-dependent protein K01761 - 4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 543.0
PJD3_k127_5877830_1 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000004329 208.0
PJD3_k127_5877830_2 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000003829 135.0
PJD3_k127_5877830_3 Domain of unknown function (DUF1330) - - - 0.000000000000000000000000000001713 123.0
PJD3_k127_5877830_4 Roadblock/LC7 domain K07131 - - 0.0000000000000000000009769 101.0
PJD3_k127_5885239_0 Sugar phosphate permease K02445 - - 0.00000000000000000000000000000000000000000000000001166 192.0
PJD3_k127_5887514_0 Proton-conducting membrane transporter K12141 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006092 384.0
PJD3_k127_5887514_1 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000801 266.0
PJD3_k127_5887514_2 hydrogenase 4 membrane K12140 - - 0.0000000000000000000000000000000000000000000000000000000004175 218.0
PJD3_k127_5894190_0 PFAM tRNA synthetase, class II (G, H, P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 533.0
PJD3_k127_5894190_1 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 482.0
PJD3_k127_5894190_2 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003108 273.0
PJD3_k127_5894190_4 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.00000000000000000000000000000002062 129.0
PJD3_k127_5897877_0 cytochrome c peroxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 301.0
PJD3_k127_5897877_1 hydrogenase large subunit K00533,K06281 - 1.12.7.2,1.12.99.6 0.00000000000000000000000000000000000000000000002681 171.0
PJD3_k127_590852_0 COG0471 Di- and tricarboxylate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003666 418.0
PJD3_k127_590852_1 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 360.0
PJD3_k127_5912297_0 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000001344 242.0
PJD3_k127_5912297_1 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000001371 235.0
PJD3_k127_5912495_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 572.0
PJD3_k127_5912495_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 298.0
PJD3_k127_5912495_2 AMP-binding enzyme C-terminal domain - - - 0.000000000003739 66.0
PJD3_k127_5912495_3 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.0000000000107 66.0
PJD3_k127_5913005_0 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 391.0
PJD3_k127_5913005_1 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 374.0
PJD3_k127_5913005_2 shikimate 3-dehydrogenase (NADP+) activity - - - 0.0000000000000000000000000000000000000000000000007467 182.0
PJD3_k127_5913005_3 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000001015 173.0
PJD3_k127_5913005_4 Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine K04068 - 1.97.1.4 0.000000000000000000000000000000000000000006367 164.0
PJD3_k127_5919248_0 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006445 323.0
PJD3_k127_5919248_1 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 311.0
PJD3_k127_5919248_2 ABC-type uncharacterized transport system - - - 0.000000000000000002422 88.0
PJD3_k127_5921308_0 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 402.0
PJD3_k127_5921308_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005545 289.0
PJD3_k127_5921826_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 511.0
PJD3_k127_5921826_1 PASTA K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000536 301.0
PJD3_k127_5921826_2 histidine kinase HAMP region domain protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001263 258.0
PJD3_k127_5921826_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000007233 68.0
PJD3_k127_5925004_0 transport system involved in gliding motility, auxiliary K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003573 402.0
PJD3_k127_5925004_1 ABC-type transport system involved in multi-copper enzyme maturation permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 350.0
PJD3_k127_5925004_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 319.0
PJD3_k127_5932607_0 Hydrophobe amphiphile Efflux-1 (HAE1) family K03296 - - 9.326e-263 823.0
PJD3_k127_593323_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000001403 179.0
PJD3_k127_593323_1 PFAM Antibiotic biosynthesis monooxygenase - - - 0.0000000000005553 73.0
PJD3_k127_593323_2 Protein of unknown function (DUF1638) - - - 0.0000008074 57.0
PJD3_k127_594573_0 Homocysteine biosynthesis enzyme, sulfur-incorporation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 355.0
PJD3_k127_594573_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000001669 158.0
PJD3_k127_594573_3 Homocysteine biosynthesis enzyme, sulfur-incorporation - - - 0.0001147 45.0
PJD3_k127_5947487_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 8.109e-217 689.0
PJD3_k127_5952586_0 Peptidase family M3 K01414 - 3.4.24.70 9.206e-246 778.0
PJD3_k127_5956216_0 two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 406.0
PJD3_k127_5956216_1 Domain of unknown function (DUF3786) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007732 254.0
PJD3_k127_5956216_2 - - - - 0.0000000000000000000000004554 109.0
PJD3_k127_5956216_3 - - - - 0.000000000000000000007077 95.0
PJD3_k127_5956216_4 ubiE/COQ5 methyltransferase family K07755 - 2.1.1.137 0.0000000000000000007346 94.0
PJD3_k127_5957062_0 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 289.0
PJD3_k127_5957062_1 PFAM Appr-1-p processing domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000002136 221.0
PJD3_k127_5957062_3 Pentapeptide repeats (9 copies) - - - 0.000000000002406 78.0
PJD3_k127_5960653_0 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000000000000000000000000000000000000000001158 235.0
PJD3_k127_5960653_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000007597 137.0
PJD3_k127_5965529_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 1.516e-250 782.0
PJD3_k127_5965529_1 ABC transporter K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007034 540.0
PJD3_k127_5965529_2 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000257 413.0
PJD3_k127_5965529_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 382.0
PJD3_k127_5965529_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 374.0
PJD3_k127_5965529_5 ATPases associated with a variety of cellular activities K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 359.0
PJD3_k127_5965529_6 Mut7-C ubiquitin - - - 0.000001245 57.0
PJD3_k127_5982045_0 PFAM permease YjgP YjgQ family protein K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002439 385.0
PJD3_k127_5982045_1 Helix-turn-helix domain K02806 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004939 271.0
PJD3_k127_5982045_2 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001201 260.0
PJD3_k127_5982045_3 PFAM permease YjgP YjgQ family protein K11720 - - 0.000000000000000000000000000000000000000000000000000003362 206.0
PJD3_k127_5982045_4 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.000000000000000000000000000000000000000000000000000006045 204.0
PJD3_k127_5993351_0 Predicted ATPase of the ABC class - - - 1.279e-241 762.0
PJD3_k127_5999013_0 peptidyl-lysine modification to peptidyl-hypusine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002266 486.0
PJD3_k127_5999013_1 PFAM Cytochrome c assembly protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 349.0
PJD3_k127_5999013_2 TIGRFAM siroheme synthase K02304 - 1.3.1.76,4.99.1.4 0.0000000000000000000000000000000000000000000007152 179.0
PJD3_k127_5999013_3 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000636 66.0
PJD3_k127_6003113_0 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 511.0
PJD3_k127_6003113_1 Methyltransferase domain - - - 0.00000000000000000000000000001114 127.0
PJD3_k127_6003113_2 SlyX K03745 - - 0.0000006569 62.0
PJD3_k127_6011116_0 Flagellar basal body rod protein K02390 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006359 448.0
PJD3_k127_6011116_1 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000000000000000000000000000000000000000000000000000000000004715 212.0
PJD3_k127_6011116_3 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.000000000000000000000000000000004145 130.0
PJD3_k127_6015050_0 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 589.0
PJD3_k127_6015050_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583 462.0
PJD3_k127_6015050_2 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 342.0
PJD3_k127_6028381_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 5.157e-264 821.0
PJD3_k127_6028381_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 546.0
PJD3_k127_6028381_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 486.0
PJD3_k127_6028381_3 COG1555 DNA uptake protein and related DNA-binding K02237 - - 0.0000000002953 68.0
PJD3_k127_6035111_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006513 411.0
PJD3_k127_6035111_1 TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 300.0
PJD3_k127_6035111_2 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 293.0
PJD3_k127_6035111_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.0000000000000000000000000000000000000000000000000000000000005015 220.0
PJD3_k127_6044214_0 PFAM peptidase M20 K01438 - 3.5.1.16 0.0000000000000000000000000000000000001366 146.0
PJD3_k127_6044214_1 PFAM Dinitrogenase iron-molybdenum cofactor - - - 0.0000000000000000000000000000000000005081 143.0
PJD3_k127_6044214_2 Dinitrogenase iron-molybdenum cofactor - - - 0.00007723 49.0
PJD3_k127_6056356_0 MutS domain I K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.047e-255 813.0
PJD3_k127_6056356_1 repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 590.0
PJD3_k127_6056356_3 Diguanylate cyclase - - - 0.0000000000000000077 94.0
PJD3_k127_6057506_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007772 589.0
PJD3_k127_6057506_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 439.0
PJD3_k127_6057506_2 Metallo-beta-lactamase superfamily K22405 - 1.6.3.4 0.00000000000000000003723 91.0
PJD3_k127_6061303_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1619.0
PJD3_k127_6061303_1 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000001366 136.0
PJD3_k127_6061428_0 Biotin and Thiamin Synthesis associated domain K03150 - 4.1.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 478.0
PJD3_k127_6061428_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 436.0
PJD3_k127_6061428_2 NAD(P)H dehydrogenase (quinone) K00355 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004673 284.0
PJD3_k127_6061428_3 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000154 220.0
PJD3_k127_6061428_4 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 GO:0003674,GO:0003824,GO:0004789,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.3 0.000000000000000000000000000000000000000000000000000000386 208.0
PJD3_k127_6061428_5 Thiamine biosynthesis K03154 - - 0.000000000000000615 80.0
PJD3_k127_6061428_6 Peptidase family M48 - - - 0.000000009122 60.0
PJD3_k127_6061428_7 Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment K07399 - - 0.0005941 48.0
PJD3_k127_606548_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008195 349.0
PJD3_k127_606548_1 of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000007947 234.0
PJD3_k127_6066306_0 PFAM Basic membrane K02058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 576.0
PJD3_k127_6066306_1 ABC transporter K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 528.0
PJD3_k127_6066306_2 Esterase PHB depolymerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002303 235.0
PJD3_k127_6066306_3 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000006668 121.0
PJD3_k127_606848_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 7.646e-210 657.0
PJD3_k127_606848_1 PFAM AMP-dependent synthetase and ligase K00666,K01897,K18661 - 6.2.1.3 0.0000000000000000000000000000000000001361 153.0
PJD3_k127_6069321_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K02482 - 2.7.13.3 0.0000000000000000000000002159 117.0
PJD3_k127_6069321_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000107 74.0
PJD3_k127_6069321_3 PFAM glycine cleavage H-protein - - - 0.0004171 51.0
PJD3_k127_6071348_0 PFAM aldo keto reductase K07079 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 517.0
PJD3_k127_6071348_1 PFAM ABC transporter related K01996 - - 0.0000000000000000000000000000000000000000000000000000000002247 205.0
PJD3_k127_6074570_0 Cell shape determining protein MreB Mrl K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084 572.0
PJD3_k127_6074570_1 Protein of unknown function (DUF2892) - - - 0.00000000000000000000000004447 113.0
PJD3_k127_6081545_0 WYL domain K13572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 360.0
PJD3_k127_6081545_1 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000001382 100.0
PJD3_k127_6081545_2 PIN domain - - - 0.00000000000000000001475 94.0
PJD3_k127_6082765_0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 312.0
PJD3_k127_6082765_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 301.0
PJD3_k127_6084407_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007969 415.0
PJD3_k127_6084407_1 - - - - 0.000001025 55.0
PJD3_k127_6084407_2 - - - - 0.0003431 49.0
PJD3_k127_6089344_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 3.866e-293 910.0
PJD3_k127_6089344_1 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000007353 201.0
PJD3_k127_6091195_0 peptidyl-tyrosine sulfation - - - 1.944e-216 706.0
PJD3_k127_6091195_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 294.0
PJD3_k127_6095171_0 purine-nucleoside phosphorylase activity K00772,K03784 GO:0003674,GO:0003824,GO:0004731,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009116,GO:0009164,GO:0009987,GO:0015949,GO:0016740,GO:0016757,GO:0016763,GO:0019439,GO:0019686,GO:0033554,GO:0034641,GO:0034655,GO:0034656,GO:0042278,GO:0042802,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000004996 255.0
PJD3_k127_6095171_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000001121 149.0
PJD3_k127_6095171_2 - - - - 0.00000000003225 67.0
PJD3_k127_6097649_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 300.0
PJD3_k127_6108730_0 Flagellar Assembly Protein A K09749 - - 2.51e-207 665.0
PJD3_k127_6108730_1 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 484.0
PJD3_k127_6108730_2 Chorismate mutase K00014,K00891,K04092,K04516 - 1.1.1.25,2.7.1.71,5.4.99.5 0.00003292 49.0
PJD3_k127_6114883_0 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005023 283.0
PJD3_k127_6114883_2 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.00000000000000009176 82.0
PJD3_k127_6116106_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000473 408.0
PJD3_k127_6116106_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001886 277.0
PJD3_k127_6117066_0 anaerobic respiration - - - 0.000000000000000000000000000000000000000000000000000001156 198.0
PJD3_k127_6125571_0 ABC transporter K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 304.0
PJD3_k127_6125571_1 ATPases associated with a variety of cellular activities K02031 - - 0.000000000000000000000000000000000000000000000001112 176.0
PJD3_k127_6125571_2 ATP:ADP antiporter activity K15762 - - 0.0000000002919 64.0
PJD3_k127_6126427_0 PFAM Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002507 561.0
PJD3_k127_6126427_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 359.0
PJD3_k127_6126427_2 Belongs to the P(II) protein family - - - 0.0000000000000000000000000000000000000000000000007798 177.0
PJD3_k127_6126427_4 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.00000000000000000000007969 106.0
PJD3_k127_6126427_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000005898 53.0
PJD3_k127_6133993_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 2.971e-258 803.0
PJD3_k127_6134888_0 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 495.0
PJD3_k127_6134888_1 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008054 454.0
PJD3_k127_6134888_2 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000611 193.0
PJD3_k127_6147478_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769 2.6.1.83 1.738e-225 704.0
PJD3_k127_6147478_1 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 332.0
PJD3_k127_6148347_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 1.512e-196 620.0
PJD3_k127_6148347_1 Lysine-2,3-aminomutase K01843 - 5.4.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 560.0
PJD3_k127_6148347_2 PFAM Acyl-CoA dehydrogenase K19066,K19067 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0022607,GO:0036094,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0048037,GO:0050660,GO:0050662,GO:0051259,GO:0051262,GO:0052890,GO:0055114,GO:0065003,GO:0071840,GO:0097159,GO:1901265,GO:1901363 1.3.8.10,1.3.8.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000818 512.0
PJD3_k127_6148347_3 PFAM Acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 363.0
PJD3_k127_6149468_0 PFAM chemotaxis sensory transducer - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004195 317.0
PJD3_k127_6149468_1 Ethylbenzene dehydrogenase - - - 0.00000000106 62.0
PJD3_k127_6157029_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 513.0
PJD3_k127_6162589_0 HMGL-like K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002269 339.0
PJD3_k127_6162589_1 cell redox homeostasis - - - 0.00000000000000000000000000000000000000004232 159.0
PJD3_k127_6163120_0 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007906 396.0
PJD3_k127_6163120_1 - - - - 0.000000000000009321 76.0
PJD3_k127_6163120_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.0000000000131 75.0
PJD3_k127_6163403_0 Bacterial extracellular solute-binding protein, family 7 K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 464.0
PJD3_k127_6163403_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000004228 224.0
PJD3_k127_6164955_0 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 523.0
PJD3_k127_6164955_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007317 510.0
PJD3_k127_6170420_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 535.0
PJD3_k127_6170420_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 412.0
PJD3_k127_6170420_2 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 307.0
PJD3_k127_6170420_3 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 308.0
PJD3_k127_6170420_4 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.000000000000000000000000000000000000000000000000000000000001019 212.0
PJD3_k127_6170420_5 - - - - 0.0000000000000000000000000000000000000000000000003268 180.0
PJD3_k127_6170420_6 - - - - 0.000000000000000000000000008415 124.0
PJD3_k127_6170420_7 FMN_bind K00348 - 1.6.5.8 0.00000000000000000000000009022 123.0
PJD3_k127_6179226_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 293.0
PJD3_k127_6179226_1 Sigma-54 interaction domain - - - 0.00000000000000000000000000000000000000001741 158.0
PJD3_k127_6181353_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002466 606.0
PJD3_k127_6181353_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007606 347.0
PJD3_k127_6181353_2 PFAM Peptidase M22, glycoprotease K01409,K14742 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000001006 237.0
PJD3_k127_6181353_3 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000001087 221.0
PJD3_k127_6181353_4 PFAM FeoA family protein K04758 - - 0.00000000000000000000001967 101.0
PJD3_k127_6181353_5 SMART PDZ DHR GLGF domain protein K11749 - - 0.0000000000000000000002477 96.0
PJD3_k127_6181353_6 PFAM FeoA domain K04758 - - 0.0000002455 57.0
PJD3_k127_618306_0 Histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 361.0
PJD3_k127_618306_1 Histidine kinase - - - 0.00003033 53.0
PJD3_k127_619421_0 PFAM Type II secretion system protein E - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 289.0
PJD3_k127_619421_1 HlyD family secretion protein K01993 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002859 262.0
PJD3_k127_619421_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000000000002103 222.0
PJD3_k127_619421_3 Chemotaxis phosphatase CheX K03409 - - 0.00000000000000000000000000000000000001253 151.0
PJD3_k127_619421_4 ATPases associated with a variety of cellular activities K01990 - - 0.0000002713 57.0
PJD3_k127_6194923_0 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004187 602.0
PJD3_k127_6194923_1 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 548.0
PJD3_k127_6194923_2 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 412.0
PJD3_k127_6195521_0 Belongs to the citrate synthase family K01647 GO:0003674,GO:0003824,GO:0004108,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0019752,GO:0036440,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046912,GO:0055114,GO:0071704,GO:0072350 2.3.3.1 1.801e-204 648.0
PJD3_k127_6195521_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 0.00000000000000000000000000000000000000000000000001551 180.0
PJD3_k127_6195521_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00003024 47.0
PJD3_k127_6201411_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 2.123e-225 717.0
PJD3_k127_6201411_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000009714 192.0
PJD3_k127_6201411_2 mechanosensitive ion channel K22044 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000003763 178.0
PJD3_k127_6204618_0 elongation factor G domain IV K02355 - - 1.647e-287 895.0
PJD3_k127_6209665_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 386.0
PJD3_k127_6209665_1 ABC-2 family transporter protein K09694 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 327.0
PJD3_k127_6210579_0 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 308.0
PJD3_k127_6210579_1 Domain of Unknown Function (DUF349) - - - 0.00000003906 64.0
PJD3_k127_6214942_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 520.0
PJD3_k127_6214942_1 Electron transfer flavoprotein, alpha subunit K03522 - - 0.000000000000000000000000000000000000000000000000000000001663 203.0
PJD3_k127_6215576_0 peptidase M48, Ste24p - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007513 491.0
PJD3_k127_6215576_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 361.0
PJD3_k127_6215576_2 PFAM Magnesium chelatase, subunit ChlI K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000132 295.0
PJD3_k127_6218758_0 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001091 255.0
PJD3_k127_6218758_1 Diguanylate cyclase - - - 0.0000000000000000000000000000000198 138.0
PJD3_k127_6218758_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000006019 126.0
PJD3_k127_6218758_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000001917 114.0
PJD3_k127_6219458_0 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 570.0
PJD3_k127_6219458_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008488 323.0
PJD3_k127_6219458_2 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000003483 248.0
PJD3_k127_6219458_3 Domain of Unknown Function (DUF349) - - - 0.00000000000000000000000000000000000000000000000000003243 206.0
PJD3_k127_6220002_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 613.0
PJD3_k127_6220002_1 Histidine kinase K07716 - 2.7.13.3 0.000000000000000000000000000000000000003874 148.0
PJD3_k127_6220002_2 PFAM Glucosamine-6-phosphate isomerases 6-phosphogluconolactonase K01057 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009987,GO:0016787,GO:0016788,GO:0017057,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0052689,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 3.1.1.31 0.0000003413 53.0
PJD3_k127_622717_0 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 373.0
PJD3_k127_622717_1 TIGRFAM Flagellar hook-associated protein, FlgK K02396 - - 0.0000000000000000000000000000000000000000000000000000000001545 215.0
PJD3_k127_622717_2 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.00000000000000000000000000000000000000000000000000007058 192.0
PJD3_k127_622717_3 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.000000000000000000000001114 104.0
PJD3_k127_622717_4 PFAM phospholipid glycerol acyltransferase - - - 0.000000000000000001075 87.0
PJD3_k127_6227334_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000004848 241.0
PJD3_k127_6227334_1 lipoyl(octanoyl) transferase activity K03644,K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181,2.8.1.8 0.0000000000000000000000000000000000002566 145.0
PJD3_k127_6231850_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 497.0
PJD3_k127_6238672_0 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004825 533.0
PJD3_k127_6238672_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006461 479.0
PJD3_k127_6238672_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 457.0
PJD3_k127_6242476_0 Carboxyl transferase domain K01615 - 4.1.1.70 1.248e-216 691.0
PJD3_k127_6242476_1 Na transporting methylmalonyl-CoA oxaloacetate decarboxylase beta subunit K01572 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000007352 260.0
PJD3_k127_6242476_2 Biotin-requiring enzyme - - - 0.0000000000000000000008921 96.0
PJD3_k127_624721_0 SMART Nucleotide binding protein, PINc K07175 - - 3.768e-236 735.0
PJD3_k127_624721_1 PFAM aminotransferase class V - - - 0.00005036 45.0
PJD3_k127_624809_0 HDOD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007805 385.0
PJD3_k127_624809_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000000001097 215.0
PJD3_k127_624809_2 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000000000000000000000000000000000000118 199.0
PJD3_k127_6258764_0 - - - - 0.000000000000000000000000000000000000003677 166.0
PJD3_k127_6261268_0 flavodoxin nitric oxide synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 484.0
PJD3_k127_6261268_1 epimerase dehydratase K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 323.0
PJD3_k127_6261268_2 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000000000000000000000000000000000000000001744 245.0
PJD3_k127_6261268_3 PFAM Dynamin family - - - 0.000000000000000000002875 100.0
PJD3_k127_6271243_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 555.0
PJD3_k127_6271243_1 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 497.0
PJD3_k127_6276711_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 364.0
PJD3_k127_6276711_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000003432 237.0
PJD3_k127_6276711_2 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000000006236 222.0
PJD3_k127_6276711_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000007586 199.0
PJD3_k127_6276711_4 PFAM Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000171 160.0
PJD3_k127_6276711_5 Rhodanese Homology Domain - - - 0.000000000000000000000008016 106.0
PJD3_k127_6277042_0 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 303.0
PJD3_k127_6277042_1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 292.0
PJD3_k127_6288777_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000002794 245.0
PJD3_k127_6288777_1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K03796 - - 0.000000000000000000000000000000000000000000000000000000000004217 220.0
PJD3_k127_6290282_0 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 388.0
PJD3_k127_6291151_0 The M ring may be actively involved in energy transduction K02409 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 596.0
PJD3_k127_6291151_1 Belongs to the flagella basal body rod proteins family K02388 - - 0.0000000000000000000000000000000000000000000001473 174.0
PJD3_k127_6291151_2 Flagellar hook-basal body complex protein FliE K02408 - - 0.00000000000000000000000004442 111.0
PJD3_k127_6291151_3 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.0000000000000001098 81.0
PJD3_k127_6296759_0 SMART Metal-dependent phosphohydrolase, HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002623 364.0
PJD3_k127_6296759_1 Hydrolase of the alpha beta-hydrolase K07020 - - 0.00000000000000000000000000000000000000000000008843 183.0
PJD3_k127_6296759_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000002848 79.0
PJD3_k127_6298508_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000001657 215.0
PJD3_k127_6298508_1 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K00344,K00966,K01840,K03431,K15778,K16881 - 1.6.5.5,2.7.7.13,5.4.2.10,5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000002323 184.0
PJD3_k127_6298508_2 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000000000003599 183.0
PJD3_k127_6314158_0 Belongs to the NifD NifK NifE NifN family K02587 - - 1.723e-245 771.0
PJD3_k127_6314158_1 Belongs to the NifD NifK NifE NifN family K02592 - - 0.000000000000000000000000000000000000000000007449 164.0
PJD3_k127_6314158_2 Ferredoxin - - - 0.0000000000000000000000000000000000000003764 150.0
PJD3_k127_6336129_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 1.252e-310 964.0
PJD3_k127_6336129_1 Sporulation and spore germination - - - 0.0000000000000000000000000000000000000202 149.0
PJD3_k127_6340051_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 2.325e-251 782.0
PJD3_k127_6342067_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 5.582e-286 886.0
PJD3_k127_6342067_1 metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000576 112.0
PJD3_k127_635075_0 COGs COG3278 Cbb3-type cytochrome oxidase subunit 1 K00404 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000006258 226.0
PJD3_k127_635075_1 - - - - 0.0002622 49.0
PJD3_k127_6359240_0 Pseudouridine synthase K06179,K06180 - 5.4.99.23,5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000789 290.0
PJD3_k127_6359240_1 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000004159 224.0
PJD3_k127_6359240_2 PFAM regulatory protein, ArsR K21903 - - 0.00000000000000000000000000000000000000000001255 166.0
PJD3_k127_6359240_3 - - - - 0.0000005972 53.0
PJD3_k127_6359657_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 368.0
PJD3_k127_6359657_1 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K03796 - - 0.000000000000000000000000000000000000000002786 160.0
PJD3_k127_6360445_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 484.0
PJD3_k127_6360445_1 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000693 120.0
PJD3_k127_6360445_2 Protein of unknown function (DUF503) K09764 - - 0.000000000000000000000000924 106.0
PJD3_k127_6360445_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000002474 104.0
PJD3_k127_6370070_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 409.0
PJD3_k127_6370070_1 TIGRFAM phosphodiesterase, MJ0936 - - - 0.00000000000000000000000000000000000000000000000007924 196.0
PJD3_k127_6371375_0 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 334.0
PJD3_k127_6379151_0 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000000000000000000000000009613 151.0
PJD3_k127_6379177_0 binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 3.649e-320 987.0
PJD3_k127_6379177_1 Cysteine-rich domain - - - 1.787e-214 670.0
PJD3_k127_6379177_2 FAD dependent oxidoreductase - - - 0.000000000000000000000000001505 113.0
PJD3_k127_639406_0 associated with various cellular activities K11907 - - 1.386e-277 861.0
PJD3_k127_6401082_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 593.0
PJD3_k127_6401082_1 signal sequence binding - - - 0.0000000000000000000000000000000000000000002439 163.0
PJD3_k127_6415316_0 TIGRFAM anaerobic ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004625 522.0
PJD3_k127_6415316_1 TIGRFAM anaerobic ribonucleoside-triphosphate reductase activating protein K04069 - 1.97.1.4 0.00000000000000000000000000001439 121.0
PJD3_k127_6415316_2 - - - - 0.00000000000000000000000000003833 118.0
PJD3_k127_6422866_0 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000000000000000000000005914 237.0
PJD3_k127_6422866_1 Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000005518 147.0
PJD3_k127_6424764_0 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 389.0
PJD3_k127_6424815_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 515.0
PJD3_k127_6424815_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000004314 233.0
PJD3_k127_6424815_2 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000001302 191.0
PJD3_k127_6424815_3 nuclease - - - 0.000000000000000000000000000000007858 139.0
PJD3_k127_643294_0 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 400.0
PJD3_k127_643294_1 PBS lyase HEAT-like repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006735 351.0
PJD3_k127_643294_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006811 246.0
PJD3_k127_643294_3 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000000000000000000000000000000000000026 240.0
PJD3_k127_643294_4 HEAT repeat - - - 0.00000000000004408 79.0
PJD3_k127_6435664_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 4.134e-202 636.0
PJD3_k127_6435664_1 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003597 619.0
PJD3_k127_6435664_2 Belongs to the CarB family K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001262 273.0
PJD3_k127_6435872_0 FAD dependent oxidoreductase K07137 - - 1.413e-196 625.0
PJD3_k127_6435872_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 526.0
PJD3_k127_6435872_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000009257 79.0
PJD3_k127_6436644_0 Deoxyribodipyrimidine photo-lyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 561.0
PJD3_k127_6436644_1 Lipocalin-like domain K03098 - - 0.00000000000000000000000000000000000000000000000000001403 194.0
PJD3_k127_6436644_2 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.0000000000000003369 87.0
PJD3_k127_6461127_0 PFAM FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005489 552.0
PJD3_k127_6466109_0 Adenylate cyclase K05851 - 4.6.1.1 2.092e-201 643.0
PJD3_k127_6472871_0 - - - - 0.0 1386.0
PJD3_k127_6472871_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000005059 63.0
PJD3_k127_6483833_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007959 379.0
PJD3_k127_6483833_1 PDZ DHR GLGF domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001235 269.0
PJD3_k127_6483833_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000000000003766 205.0
PJD3_k127_6498225_0 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 416.0
PJD3_k127_6498225_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000004913 236.0
PJD3_k127_6498225_2 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000000000000000002917 168.0
PJD3_k127_6500409_0 acetyl-CoA hydrolase transferase - - - 1.73e-238 751.0
PJD3_k127_6500409_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003651 265.0
PJD3_k127_6500409_2 acetylesterase activity K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002031 271.0
PJD3_k127_6500409_3 helix_turn_helix isocitrate lyase regulation - - - 0.000000001292 61.0
PJD3_k127_6507228_0 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000866 262.0
PJD3_k127_6507228_1 TIGRFAM Pyridine nucleotide-disulfide oxidoreductase family protein - - - 0.0000000000000000000000000000000000000003238 155.0
PJD3_k127_6508586_0 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 365.0
PJD3_k127_6508586_1 DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000004459 272.0
PJD3_k127_6508586_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000893 250.0
PJD3_k127_6516413_0 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 348.0
PJD3_k127_6518534_0 serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004921 480.0
PJD3_k127_6518534_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006885 284.0
PJD3_k127_6518534_2 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000000000000000002073 231.0
PJD3_k127_6518534_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000002715 160.0
PJD3_k127_6518534_4 PFAM Carboxylyase-related protein K03182 - 4.1.1.98 0.000000000000000000000000000000000003309 141.0
PJD3_k127_6518534_5 Glycine zipper 2TM domain K06077 - - 0.00000000000000000000000000000008163 131.0
PJD3_k127_6518534_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000597 109.0
PJD3_k127_6518534_7 - - - - 0.0000001516 63.0
PJD3_k127_6521268_0 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 306.0
PJD3_k127_6521268_1 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000000000000000000000000000000000000008865 236.0
PJD3_k127_6521268_2 biopolymer transport protein K03559 - - 0.0000000000000000000000000000000000000000000000000000000000000003071 223.0
PJD3_k127_6525451_0 prephenate dehydrogenase K04517,K14187 - 1.3.1.12,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000439 469.0
PJD3_k127_6525451_1 PFAM Metal-dependent phosphohydrolase, HD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004452 317.0
PJD3_k127_6525451_2 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000005079 128.0
PJD3_k127_6525566_0 Dehydrogenase E1 component K00164 - 1.2.4.2 9.984e-263 822.0
PJD3_k127_6525566_1 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00627,K00658 - 2.3.1.12,2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 341.0
PJD3_k127_6530974_0 Type VI secretion system, TssF K11896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000424 498.0
PJD3_k127_6530974_1 Pfam:T6SS_VasB K11895 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008287 413.0
PJD3_k127_6530974_2 TIGRFAM type VI secretion protein, VC_A0110 family K11896 - - 0.000000000004115 67.0
PJD3_k127_6540401_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005987 478.0
PJD3_k127_6540401_1 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006579 258.0
PJD3_k127_6544289_0 von Willebrand factor (vWF) type A domain - - - 0.000000002644 69.0
PJD3_k127_6555295_0 Major Facilitator Superfamily K02445 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000343 260.0
PJD3_k127_6555295_1 Major Facilitator Superfamily K02445 - - 0.00000000000000000000000000000000000000000000000000000000000004542 220.0
PJD3_k127_658527_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1370.0
PJD3_k127_672568_0 Aminotransferase class I and II K00814 - 2.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007294 275.0
PJD3_k127_672568_1 PFAM Conserved region in glutamate synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005451 240.0
PJD3_k127_674764_0 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008829 302.0
PJD3_k127_674764_1 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003049 304.0
PJD3_k127_674764_2 Fe-S cluster domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002983 257.0
PJD3_k127_674764_3 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.0000000000000000000000000000000000000000000000000000000000007704 218.0
PJD3_k127_674764_4 protein secretion K03116,K03117 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0040007,GO:0042802,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.0000000000000000000000000005844 116.0
PJD3_k127_679830_0 Putative peptidoglycan binding domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 383.0
PJD3_k127_679830_1 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000002289 233.0
PJD3_k127_679830_2 PFAM Uncharacterised ArCR, COG2043 - - - 0.000000000000000000000000000000000000000000000000000000005739 200.0
PJD3_k127_679830_3 PFAM OmpA MotB domain protein K02557 - - 0.0000000000000000000000000000000000000005837 162.0
PJD3_k127_679830_4 - - - - 0.00000000000000000000000000000001308 135.0
PJD3_k127_686169_0 PFAM Branched-chain amino acid transport system permease component K05832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 299.0
PJD3_k127_686169_1 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002282 271.0
PJD3_k127_69185_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000005074 260.0
PJD3_k127_69185_1 protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000000000000000000000000000000000000000000002478 201.0
PJD3_k127_69185_2 PFAM nuclease (SNase domain protein) - - - 0.0000000000000000000000000000000000000000002507 163.0
PJD3_k127_697685_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 364.0
PJD3_k127_697685_1 sequence-specific DNA binding K03557,K07712 GO:0000018,GO:0000229,GO:0000785,GO:0000786,GO:0000787,GO:0000789,GO:0000976,GO:0000984,GO:0000985,GO:0001017,GO:0001046,GO:0001047,GO:0001067,GO:0001121,GO:0001130,GO:0001131,GO:0001140,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016032,GO:0016070,GO:0018130,GO:0019042,GO:0019045,GO:0019046,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031421,GO:0032359,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044374,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044815,GO:0045892,GO:0045893,GO:0045911,GO:0045934,GO:0045935,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000000000000000000000000002008 206.0
PJD3_k127_701863_0 PFAM Histone deacetylase - - - 9.056e-240 752.0
PJD3_k127_701863_1 Lysine-2,3-aminomutase K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 432.0
PJD3_k127_701863_2 ATP-grasp domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 372.0
PJD3_k127_701863_3 Rhodanese Homology Domain K01011,K21028 - 2.8.1.1,2.8.1.11,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007849 268.0
PJD3_k127_701863_4 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) K10794 - 1.21.4.1 0.000000000000000000000000000000000000000000000000000000000000003501 221.0
PJD3_k127_701863_5 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000001217 195.0
PJD3_k127_701863_6 - - - - 0.0000000000000000000000000000000000002691 143.0
PJD3_k127_701863_7 acetyltransferase K18815 - 2.3.1.82 0.0000000000000000000000000001184 131.0
PJD3_k127_71109_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1462.0
PJD3_k127_71136_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 354.0
PJD3_k127_71136_1 Nucleotide-binding protein implicated in inhibition of septum formation K06287 - - 0.000000000000000000000000000000000000000000000000000000004509 209.0
PJD3_k127_71136_3 Fe-S cluster domain protein - - - 0.0001198 54.0
PJD3_k127_723855_0 HRDC domain protein K03684 - 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 339.0
PJD3_k127_723855_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000001501 141.0
PJD3_k127_726407_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 2.1.1.74 6.739e-213 672.0
PJD3_k127_728529_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 8.488e-301 938.0
PJD3_k127_728529_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000001151 113.0
PJD3_k127_728529_2 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000001865 98.0
PJD3_k127_730414_0 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 618.0
PJD3_k127_730414_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000006098 57.0
PJD3_k127_735796_0 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000497 274.0
PJD3_k127_735796_3 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K00254,K02823,K17828 GO:0003674,GO:0003824,GO:0004152,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.1.14,1.3.5.2 0.0000000000000001247 83.0
PJD3_k127_735796_4 Serine aminopeptidase, S33 - - - 0.000000000000006982 76.0
PJD3_k127_739456_0 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 392.0
PJD3_k127_739456_1 Belongs to the UbiD family K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 326.0
PJD3_k127_739456_2 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000007118 242.0
PJD3_k127_739456_3 Zincin-like metallopeptidase - - - 0.00000000000000000000000000000006734 129.0
PJD3_k127_739640_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004825 274.0
PJD3_k127_743703_0 PFAM ATP-binding region, ATPase domain protein K02668,K07708,K07709 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003111 400.0
PJD3_k127_743703_1 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006401 276.0
PJD3_k127_743703_2 DNA mismatch repair protein MutT - - - 0.00000000000000000000000000000000004771 143.0
PJD3_k127_74424_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 576.0
PJD3_k127_74424_1 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005669 267.0
PJD3_k127_75259_0 Type II and III secretion system protein K02666 - - 5.786e-213 672.0
PJD3_k127_75259_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000003598 243.0
PJD3_k127_761165_0 FAD dependent oxidoreductase K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 415.0
PJD3_k127_761165_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000008843 211.0
PJD3_k127_761165_2 PFAM conserved K06966 - 3.2.2.10 0.0000000004439 66.0
PJD3_k127_763652_0 thiol-disulfide isomerase and thioredoxins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 325.0
PJD3_k127_763652_1 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000000000000000001547 227.0
PJD3_k127_763652_2 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000009656 184.0
PJD3_k127_763652_3 PFAM NADPH-dependent FMN reductase - - - 0.00001148 48.0
PJD3_k127_76459_0 Cytochrome c554 and c-prime K10535 - 1.7.2.6 0.00000000000000000000000000000000000000000000000000000745 199.0
PJD3_k127_770217_0 PFAM Dynamin family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 581.0
PJD3_k127_777907_0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009368 264.0
PJD3_k127_777907_1 response regulator receiver K03407,K03415 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000003103 243.0
PJD3_k127_777907_2 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.000004425 49.0
PJD3_k127_781114_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 2.185e-201 633.0
PJD3_k127_781114_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 334.0
PJD3_k127_781114_2 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000756 82.0
PJD3_k127_782881_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 383.0
PJD3_k127_782881_1 PFAM Polysulphide reductase, NrfD - - - 0.000000000000649 68.0
PJD3_k127_784829_0 TIGRFAM ATP-dependent DNA helicase, RecQ K03654 - 3.6.4.12 5.477e-242 758.0
PJD3_k127_784829_1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.00000000000000000000000000000000000000000000000521 175.0
PJD3_k127_784829_2 protein domain associated with GTPases - - - 0.00000003872 62.0
PJD3_k127_785758_0 ABC transporter substrate binding protein K01989 - - 0.00000000000000000000000000000000000000001941 165.0
PJD3_k127_789639_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 373.0
PJD3_k127_789639_1 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000000000000001003 160.0
PJD3_k127_816198_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 361.0
PJD3_k127_816198_1 pfam chad - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 334.0
PJD3_k127_816198_2 Cellulose biosynthesis protein BcsQ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 327.0
PJD3_k127_816198_3 CYTH K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000003255 166.0
PJD3_k127_816782_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 3.943e-278 860.0
PJD3_k127_816782_1 SMART Elongator protein 3 MiaB NifB K22227 - - 5.133e-204 637.0
PJD3_k127_816782_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 548.0
PJD3_k127_817783_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.105e-295 919.0
PJD3_k127_817783_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 533.0
PJD3_k127_832921_0 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 459.0
PJD3_k127_832921_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 346.0
PJD3_k127_832921_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001625 271.0
PJD3_k127_832921_3 oxidoreductase K00177 - 1.2.7.3 0.00000000000000000000000000000000000000001179 170.0
PJD3_k127_832921_4 filamentous hemagglutinin family N-terminal domain - - - 0.000000000000000000000000000000000000001352 159.0
PJD3_k127_832921_5 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000003961 93.0
PJD3_k127_859583_0 Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 434.0
PJD3_k127_859583_1 Voltage gated chloride channel K03281 - - 0.0000000000000000000000000000000000000000000000000000000000000002306 229.0
PJD3_k127_865382_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 497.0
PJD3_k127_865382_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000003496 201.0
PJD3_k127_869505_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 7.598e-231 727.0
PJD3_k127_877363_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0 1055.0
PJD3_k127_877363_1 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000753 337.0
PJD3_k127_877813_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 410.0
PJD3_k127_877813_1 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000009004 81.0
PJD3_k127_877813_2 - - - - 0.0000000000003637 79.0
PJD3_k127_877813_3 PFAM Flavin containing amine oxidoreductase - - - 0.00000000004981 67.0
PJD3_k127_882024_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 299.0
PJD3_k127_882024_1 methyltransferase - - - 0.00000000000000000000001421 109.0
PJD3_k127_882476_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 327.0
PJD3_k127_882476_1 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009676 286.0
PJD3_k127_882476_2 AAA domain, putative AbiEii toxin, Type IV TA system K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003143 293.0
PJD3_k127_890840_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 2.569e-206 650.0
PJD3_k127_890840_1 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.00000000000000000000000000000003369 130.0
PJD3_k127_898512_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 458.0
PJD3_k127_898512_1 beta-lactamase activity K07126 - - 0.000000000001403 79.0
PJD3_k127_898512_2 acid phosphatase activity - - - 0.0000000006641 68.0
PJD3_k127_923987_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 538.0
PJD3_k127_923987_1 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 532.0
PJD3_k127_923987_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism K00990 - 2.7.7.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006738 373.0
PJD3_k127_941557_0 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 514.0
PJD3_k127_941557_1 pfam abc1 K03688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001046 258.0
PJD3_k127_941557_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00176 - 1.2.7.3 0.00000000000000000000002689 103.0
PJD3_k127_941614_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 1.86e-199 625.0
PJD3_k127_941614_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3,2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 353.0
PJD3_k127_952942_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 4.432e-211 700.0
PJD3_k127_952942_1 Outer membrane protein assembly complex, YaeT protein K07277 - - 0.0001128 54.0
PJD3_k127_962790_0 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 454.0
PJD3_k127_962790_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004813 298.0
PJD3_k127_962790_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000002035 222.0
PJD3_k127_962790_3 Predicted metal-binding protein (DUF2284) - - - 0.000000000000000000000000000000000000000000000002644 178.0
PJD3_k127_962790_4 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352,K21307 - 1.8.5.5,1.8.5.6 0.00000000000000000002127 98.0
PJD3_k127_962790_5 - - - - 0.00000000002553 72.0
PJD3_k127_965821_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 495.0
PJD3_k127_965821_1 response regulator K07714 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 379.0
PJD3_k127_965821_2 Bacterial regulatory protein, Fis family K07714 - - 0.00000000000000000000000000000000000000000000000000000000000001308 221.0
PJD3_k127_965821_3 Response regulator sensory box histidine kinase - - - 0.00002419 46.0
PJD3_k127_966772_0 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 327.0
PJD3_k127_966772_1 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000005991 235.0
PJD3_k127_966772_2 PFAM Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000002242 175.0
PJD3_k127_966772_3 Uncharacterised ArCR, COG2043 - - - 0.00000000000000000000000000000000000003007 149.0
PJD3_k127_96880_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002575 583.0
PJD3_k127_96880_1 ABC transporter transmembrane region K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007485 541.0
PJD3_k127_96880_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000005217 134.0
PJD3_k127_96880_3 Transcriptional regulator - - - 0.0000000000000000000000004645 109.0
PJD3_k127_998039_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 343.0
PJD3_k127_998039_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124,K07307 - - 0.00000000000000000000000000000000000000000000000000000002763 203.0
PJD3_k127_998039_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000002826 99.0