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Overview

ID MAG02924
Name PJD3_bin.13
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order SZUA-152
Family SZUA-152
Genus JAKEGK01
Species
Assembly information
Completeness (%) 81.89
Contamination (%) 1.49
GC content (%) 46.0
N50 (bp) 5,656
Genome size (bp) 2,479,330

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2366

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_1000762_0 Glutamate-1-semialdehyde aminotransferase K01845 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016853,GO:0016866,GO:0016869,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042286,GO:0042440,GO:0042802,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 507.0
PJD3_k127_1000762_1 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006192 364.0
PJD3_k127_1000762_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000000001362 194.0
PJD3_k127_1000762_3 Domain of unknown function (DUF5063) - - - 0.000000000000000004404 90.0
PJD3_k127_100775_0 TIGRFAM Flagellar hook-associated protein 3 K02397 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 340.0
PJD3_k127_100775_1 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001044 265.0
PJD3_k127_100775_2 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 GO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464 - 0.0000000000000000000000000000000000000000444 153.0
PJD3_k127_100775_3 Flagellar basal body rod FlgEFG protein C-terminal K02396 - - 0.000000000000000000000000000000001147 136.0
PJD3_k127_100775_4 DsrC like protein K11179 - - 0.00000000000000000002847 94.0
PJD3_k127_1023915_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494 3.6.4.12 2.579e-241 767.0
PJD3_k127_1023915_1 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000000000000000087 209.0
PJD3_k127_1023915_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000001103 159.0
PJD3_k127_1025983_0 Isocitrate/isopropylmalate dehydrogenase K00031 GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114 1.1.1.42 0.000000000000000000000000000000109 126.0
PJD3_k127_1025983_1 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02462 - - 0.000000000000000000000000003216 117.0
PJD3_k127_1025983_2 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.00000001186 66.0
PJD3_k127_1025983_3 Type II secretion system (T2SS), protein N K02463 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00008318 53.0
PJD3_k127_1052325_0 acetyltransferase - - - 0.0000000000000000000000000000000000000000000001169 171.0
PJD3_k127_1052325_1 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000001372 148.0
PJD3_k127_1052325_2 - - - - 0.00000000000000000000000000000000001646 138.0
PJD3_k127_1052325_3 - - - - 0.00000000000000000000000000001289 126.0
PJD3_k127_1052325_4 Fructose-bisphosphate aldolase class-II K01624 - 4.1.2.13 0.0000000000000000001495 93.0
PJD3_k127_1054784_0 AAA domain K07028 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 436.0
PJD3_k127_1054784_1 Amino acid permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002163 370.0
PJD3_k127_1054784_2 Transcriptional regulatory protein, C terminal K07662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008042 264.0
PJD3_k127_1054784_3 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07640 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000509 243.0
PJD3_k127_1054784_4 Rhodanese-like domain - - - 0.00000000000000000000429 97.0
PJD3_k127_1054784_5 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family K00219 - 1.3.1.34 0.0000000000000001237 80.0
PJD3_k127_1077898_0 PFAM UDP-glucose GDP-mannose dehydrogenase K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 367.0
PJD3_k127_1077898_1 PFAM peptidase M22 glycoprotease K14742 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000436 250.0
PJD3_k127_1077898_2 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000000000000000000000000000007131 211.0
PJD3_k127_1077898_3 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.00000000000000000000000000000000000000003914 159.0
PJD3_k127_1077898_4 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000007118 139.0
PJD3_k127_1079106_0 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 333.0
PJD3_k127_1079106_1 PFAM NAD binding domain of 6-phosphogluconate dehydrogenase K00020,K00042 - 1.1.1.31,1.1.1.60 0.0000000000000000000000000000000000000000000000000000004561 203.0
PJD3_k127_1079106_2 K+ potassium transporter K01159 - 3.1.22.4 0.000000000000003123 76.0
PJD3_k127_1079106_3 - - - - 0.00000265 59.0
PJD3_k127_1083858_0 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.00000000000000000000000000000000000000000000000000000000004022 213.0
PJD3_k127_1083858_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000006818 198.0
PJD3_k127_1083858_2 PFAM ApaG domain protein K06195 - - 0.0000000000000000000499 89.0
PJD3_k127_1083858_3 Outer membrane protein beta-barrel domain - - - 0.00000001642 64.0
PJD3_k127_1084712_0 Putative peptidoglycan binding domain K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 471.0
PJD3_k127_1084712_1 Bacterial protein of unknown function (DUF839) K07093 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 397.0
PJD3_k127_1084712_2 Type II secretion system protein B K02451 - - 0.0000000003067 70.0
PJD3_k127_1088330_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 1.854e-252 804.0
PJD3_k127_1088330_1 5'-nucleotidase, C-terminal domain K01119 - 3.1.3.6,3.1.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 317.0
PJD3_k127_1088330_2 Serine aminopeptidase, S33 K06889 - - 0.00000000000000000000000000000000000000000000000000000000004046 214.0
PJD3_k127_1088330_3 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.00000000000004273 83.0
PJD3_k127_1128072_0 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 490.0
PJD3_k127_1128072_1 Homocysteine s-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 385.0
PJD3_k127_1128072_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000000000000000000000000000000006438 226.0
PJD3_k127_1128072_3 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000142 212.0
PJD3_k127_1128072_4 Protein of unknown function (DUF1439) - - - 0.00000000000000000000000000004954 123.0
PJD3_k127_1128072_5 YHS domain - - - 0.00000003371 58.0
PJD3_k127_1155610_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005253 519.0
PJD3_k127_1155610_1 PFAM MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003713 281.0
PJD3_k127_1155610_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000008763 235.0
PJD3_k127_1155610_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000001941 183.0
PJD3_k127_1155610_4 Tol-Pal system-associated acyl-CoA thioesterase K07107 - - 0.00000000000000000000000000000000000000000000003164 173.0
PJD3_k127_1155610_5 Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000000000008077 173.0
PJD3_k127_118776_0 Peptidase, M16 K06972 - - 1.883e-276 869.0
PJD3_k127_118776_1 MOSC domain - - - 0.000000000000000000000000000000000000000002003 161.0
PJD3_k127_118776_2 PFAM Exonuclease K01141 - 3.1.11.1 0.000000000002035 70.0
PJD3_k127_1191546_0 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000575 217.0
PJD3_k127_1191546_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000001079 208.0
PJD3_k127_1191546_2 Ethanolamine utilisation protein EutQ K06995 - - 0.00000000000000000000000000000003389 126.0
PJD3_k127_1194126_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 5.208e-303 941.0
PJD3_k127_1194126_1 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006739 325.0
PJD3_k127_1194126_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002729 284.0
PJD3_k127_1194126_3 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000000000000000000000000000000001925 256.0
PJD3_k127_1194126_4 oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001701 246.0
PJD3_k127_1194126_5 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000001307 192.0
PJD3_k127_1194126_6 Thioredoxin-like - - - 0.000000000000000000000004096 109.0
PJD3_k127_1194126_7 subunit of a heme lyase K02200 - - 0.0000000000000001257 82.0
PJD3_k127_1194126_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000004537 50.0
PJD3_k127_1194126_9 Tetratricopeptide repeat - - - 0.000006658 50.0
PJD3_k127_119992_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 6.907e-262 815.0
PJD3_k127_119992_1 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 367.0
PJD3_k127_119992_2 ParB-like nuclease domain K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 356.0
PJD3_k127_119992_3 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000000000000001434 222.0
PJD3_k127_119992_4 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000000000001698 166.0
PJD3_k127_119992_6 ATP synthase I chain K02116 - - 0.00000000000324 71.0
PJD3_k127_1234401_0 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 596.0
PJD3_k127_1234401_1 response regulator K07715 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 556.0
PJD3_k127_1234401_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07711 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003609 411.0
PJD3_k127_1234401_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 377.0
PJD3_k127_1234401_4 protein histidine kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002111 292.0
PJD3_k127_1234401_5 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004003 250.0
PJD3_k127_1234401_6 rubredoxin - - - 0.000000000000000000000000002189 111.0
PJD3_k127_1234401_7 RNA recognition motif - - - 0.00000000000000000000009209 103.0
PJD3_k127_1234401_8 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000008313 79.0
PJD3_k127_1234401_9 subunit of a heme lyase K02200 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0017004,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071840,GO:0071944,GO:0098552,GO:0098567 - 0.000006107 49.0
PJD3_k127_126727_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 619.0
PJD3_k127_126727_1 PFAM SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000004501 203.0
PJD3_k127_1294476_0 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001028 270.0
PJD3_k127_1294476_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000004051 223.0
PJD3_k127_1298322_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 328.0
PJD3_k127_1298322_1 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000004673 96.0
PJD3_k127_1298322_2 Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility K21087 GO:0000166,GO:0001539,GO:0003674,GO:0005488,GO:0006928,GO:0008144,GO:0008150,GO:0009987,GO:0017076,GO:0019001,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0035438,GO:0036094,GO:0040011,GO:0040012,GO:0043167,GO:0043168,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051674,GO:0065007,GO:0071945,GO:0071973,GO:0097159,GO:0097367,GO:0097588,GO:1901265,GO:1901363,GO:1902021,GO:2000145 - 0.00000000000004967 81.0
PJD3_k127_1298322_3 Thioredoxin-like domain - - - 0.00085 45.0
PJD3_k127_1298998_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.775e-276 859.0
PJD3_k127_1298998_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 552.0
PJD3_k127_1298998_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 465.0
PJD3_k127_1298998_3 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009351 362.0
PJD3_k127_1298998_4 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000001858 255.0
PJD3_k127_1298998_5 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000001311 254.0
PJD3_k127_1298998_6 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000000000000000005003 161.0
PJD3_k127_1298998_7 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.00000000000000000000000000000000000000006092 152.0
PJD3_k127_1298998_8 Lipopolysaccharide assembly protein A domain K08992 - - 0.00000001304 59.0
PJD3_k127_1313937_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 9.596e-284 893.0
PJD3_k127_1313937_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 2.278e-202 638.0
PJD3_k127_1313937_2 PFAM regulatory protein, MerR - - - 0.00000000000000000000000000000000000000000000000000002609 189.0
PJD3_k127_1313937_3 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032774,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000881 158.0
PJD3_k127_1313937_4 GGDEF domain - - - 0.0000000000000000000000000000000000004685 152.0
PJD3_k127_1313937_5 cytochrome - - - 0.0000000000001261 74.0
PJD3_k127_132617_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002642 319.0
PJD3_k127_132617_1 Histidine kinase-, DNA gyrase B-, and HSP90-like - - - 0.000000000000000000000000000000000000000000000000000000000000002982 235.0
PJD3_k127_132617_2 organic phosphonate transport K02044 - - 0.0000000000000000000000000000000000000001534 161.0
PJD3_k127_132617_3 Domain of unknown function (DUF5062) - - - 0.0000000000000000002253 91.0
PJD3_k127_1333898_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 1.1e-220 694.0
PJD3_k127_1333898_1 Domain of unknown function (DUF4931) K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 494.0
PJD3_k127_1333898_2 Belongs to the UPF0260 family K09160 - - 0.0000000000000000000000000000000000000000000000000000000003003 205.0
PJD3_k127_1333898_3 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000139 208.0
PJD3_k127_1333898_4 FKBP-type peptidyl-prolyl isomerase K03773 - 5.2.1.8 0.00000000000000000000006852 98.0
PJD3_k127_1340130_0 PFAM CheR methyltransferase, SAM binding domain K13486 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001821 269.0
PJD3_k127_1340130_1 Chemotaxis signal transduction protein K13489 - - 0.0000000000000000000000000000000000000001068 158.0
PJD3_k127_1340130_2 RESPONSE REGULATOR receiver K13490 - - 0.00000000000000000000000000000000002543 141.0
PJD3_k127_1344988_0 COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 7.453e-261 841.0
PJD3_k127_1344988_1 Type IV pilus assembly protein PilX C-term K02673 - - 0.0000000000000001052 87.0
PJD3_k127_1344988_2 TIGRFAM prepilin-type N-terminal cleavage methylation domain K02655 - - 0.0000001641 56.0
PJD3_k127_134806_0 PFAM AMP-dependent synthetase and ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 465.0
PJD3_k127_134806_1 Thermostable hemolysin - - - 0.00000000000000000000000000000472 124.0
PJD3_k127_1349541_0 ERAD pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000102 266.0
PJD3_k127_1349541_1 long-chain fatty acid transporting porin activity K07267 - - 0.000000000005803 77.0
PJD3_k127_1363701_0 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008840,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0019877,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 351.0
PJD3_k127_1363701_1 PFAM Amino acid-binding ACT K03567 - - 0.00000000000000000000000000000000000000000000000000000000000000002066 228.0
PJD3_k127_1363701_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008840,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0019877,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.3.7 0.00000000000000000001436 92.0
PJD3_k127_1363701_3 Peroxiredoxin K03564 - 1.11.1.15 0.0000000000000001272 81.0
PJD3_k127_1388970_0 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000539 309.0
PJD3_k127_1388970_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008566 292.0
PJD3_k127_1388970_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000001754 234.0
PJD3_k127_1388970_3 - - - - 0.00000000000000000000000000003765 121.0
PJD3_k127_1393554_0 lipoprotein releasing system, transmembrane protein, LolC E family K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004051 429.0
PJD3_k127_1393554_1 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 289.0
PJD3_k127_1393554_2 protein conserved in bacteria K09928 - - 0.0000000000000000000000000000000000000003237 151.0
PJD3_k127_1395119_0 Methionine synthase K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0 1291.0
PJD3_k127_1395119_1 PFAM TrkA-N domain K03499 - - 3.033e-222 696.0
PJD3_k127_1395119_10 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000000002008 220.0
PJD3_k127_1395119_11 PFAM Tellurite resistance protein TehB - - - 0.000000000000000000000000000000000000000000000000000002168 197.0
PJD3_k127_1395119_12 Sel1 repeat protein K07126 - - 0.0000000000000000000000000000000005667 142.0
PJD3_k127_1395119_13 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000001014 126.0
PJD3_k127_1395119_14 - - - - 0.00000000000004212 76.0
PJD3_k127_1395119_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 1.156e-218 687.0
PJD3_k127_1395119_3 signal transduction histidine kinase - - - 5.117e-214 687.0
PJD3_k127_1395119_4 response regulator receiver K13599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 461.0
PJD3_k127_1395119_5 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 440.0
PJD3_k127_1395119_6 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 349.0
PJD3_k127_1395119_7 Transcriptional regulator K13634 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 331.0
PJD3_k127_1395119_8 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000000000000000059 273.0
PJD3_k127_1395119_9 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000007358 259.0
PJD3_k127_1409955_0 Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) K05365 - 2.4.1.129,3.4.16.4 1.725e-252 801.0
PJD3_k127_1409955_1 Helicase K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 411.0
PJD3_k127_1409955_2 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 363.0
PJD3_k127_1409955_3 Type IV pilus biogenesis stability protein PilW - - - 0.00000000000000007295 87.0
PJD3_k127_1411545_0 Domain of unknown function (DUF3330) - - - 0.00000000002627 67.0
PJD3_k127_1411545_1 heat shock protein binding K05516,K05801,K18481 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363 - 0.000006504 59.0
PJD3_k127_1411951_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 452.0
PJD3_k127_1411951_1 Belongs to the UPF0753 family K09822 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003006 351.0
PJD3_k127_1411951_2 - - - - 0.00000000000000000000000000000000000000000000000000000000001915 214.0
PJD3_k127_1424571_0 bifunctional purine biosynthesis protein purh K00602 GO:0003674,GO:0003824,GO:0004643,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 456.0
PJD3_k127_1424571_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006874 436.0
PJD3_k127_1424571_2 Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters K03557 - - 0.0000000000000000000003614 98.0
PJD3_k127_1435657_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 2.918e-298 930.0
PJD3_k127_1435657_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000322 515.0
PJD3_k127_1435657_2 transporter, dctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 301.0
PJD3_k127_1435657_3 Haem-degrading - - - 0.000000000000000000000000000000000000000000000000000004546 195.0
PJD3_k127_1435657_4 Phosphate-starvation-inducible E K13256 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000006951 124.0
PJD3_k127_1456408_0 Belongs to the glutamine synthetase family K01915 - 6.3.1.2 6.09e-220 689.0
PJD3_k127_1456408_1 COG0518 GMP synthase - Glutamine amidotransferase domain K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000001867 245.0
PJD3_k127_145905_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002472 274.0
PJD3_k127_145905_1 FimV C-terminal K08086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000935 282.0
PJD3_k127_145905_2 E3 Ubiquitin ligase - - - 0.0000000000000000000000000000000000000000000000000006264 193.0
PJD3_k127_145905_3 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000002906 151.0
PJD3_k127_145905_4 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16785 - - 0.0000000000000000005992 96.0
PJD3_k127_1461490_0 Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) K17763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 346.0
PJD3_k127_1461490_1 PFAM Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000001006 205.0
PJD3_k127_1461490_2 photoreceptor activity - - - 0.0000000000000000000000000000000000005772 151.0
PJD3_k127_1461490_3 Histidine kinase-like ATPase domain - - - 0.000000000000000000000000000000000002701 143.0
PJD3_k127_1461490_4 STAS domain K17762 - - 0.00000000000000000000000000000002469 128.0
PJD3_k127_1461490_5 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000002722 114.0
PJD3_k127_1461490_6 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000000000000000005705 113.0
PJD3_k127_1461490_7 cellulase activity - - - 0.0000000001353 76.0
PJD3_k127_1465314_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 449.0
PJD3_k127_1465314_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005091 379.0
PJD3_k127_1465314_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000003883 164.0
PJD3_k127_1465314_3 Bacterial extracellular solute-binding protein K05772 - - 0.0000000000000000000000000000000000000001318 154.0
PJD3_k127_1465314_4 Protein of unknown function (DUF3305) - - - 0.000000000000000000000000000004534 124.0
PJD3_k127_1465314_5 4Fe-4S binding domain - - - 0.000000000000000000000000005617 118.0
PJD3_k127_1465314_6 Evidence 4 Homologs of previously reported genes of - - - 0.000000003351 60.0
PJD3_k127_1476237_0 Putative diguanylate phosphodiesterase K21025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 438.0
PJD3_k127_1476237_1 TIGRFAM lysine 2,3-aminomutase YodO family protein K01843,K19810 - 5.4.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 359.0
PJD3_k127_1476237_2 Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002174 308.0
PJD3_k127_1476237_3 - - - - 0.0000000000000000000000000000000000000000000000000000007242 215.0
PJD3_k127_1476237_4 With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P K04568 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006430,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016746,GO:0016755,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052868,GO:0071704,GO:0071915,GO:0072580,GO:0072581,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000174 103.0
PJD3_k127_1482701_0 PFAM ATPase associated with various cellular activities, AAA_3 K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 403.0
PJD3_k127_1482701_1 Enterobacterial TraT complement resistance protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003046 276.0
PJD3_k127_1482701_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003918 273.0
PJD3_k127_1482701_3 - - - - 0.000000000000000000000000000000002942 132.0
PJD3_k127_1482701_4 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.0000000000000000000002033 100.0
PJD3_k127_1482701_5 Belongs to the ompA family K03640 - - 0.00000000000000000005823 98.0
PJD3_k127_1487319_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 2.452e-239 748.0
PJD3_k127_1487319_1 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 507.0
PJD3_k127_1487319_2 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000000000000000404 223.0
PJD3_k127_1501357_0 Predicted ATPase of the ABC class - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009708 530.0
PJD3_k127_1501357_1 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008771 404.0
PJD3_k127_1501357_2 - - - - 0.000000000000000000000000002035 115.0
PJD3_k127_1518652_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004341 285.0
PJD3_k127_1518652_1 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.000000000000000000001022 97.0
PJD3_k127_1522452_0 COGs COG1136 ABC-type antimicrobial peptide transport system ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001917 276.0
PJD3_k127_1522452_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.0000000000000000000000000000000000000000000000000000000000006256 214.0
PJD3_k127_1522452_2 LTXXQ motif family protein - - - 0.000127 51.0
PJD3_k127_1529944_0 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 480.0
PJD3_k127_1529944_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002152 377.0
PJD3_k127_1529944_2 PFAM Aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 358.0
PJD3_k127_1529944_3 Two component transcriptional regulator, LuxR family K07689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001732 282.0
PJD3_k127_1529944_4 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00966,K00992 GO:0000166,GO:0000270,GO:0000287,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0005488,GO:0006022,GO:0006040,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019752,GO:0030203,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044281,GO:0046872,GO:0070569,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564 2.7.7.13,2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008838 269.0
PJD3_k127_1529944_5 COG0642 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001522 248.0
PJD3_k127_1529944_6 Histidine kinase-like ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001104 241.0
PJD3_k127_1529944_7 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000524 196.0
PJD3_k127_1529944_8 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000001267 186.0
PJD3_k127_1529944_9 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000000001671 120.0
PJD3_k127_1552882_0 PFAM Sulfate transporter antisigma-factor antagonist STAS K03321 - - 0.00000000000000000000000000000001347 127.0
PJD3_k127_1552882_1 Sel1 domain protein repeat-containing protein K07126 - - 0.0000000000000000001896 93.0
PJD3_k127_1552882_2 LPP20 lipoprotein - - - 0.00000000000000006566 88.0
PJD3_k127_1552882_3 LPP20 lipoprotein - - - 0.000001336 60.0
PJD3_k127_1560828_0 Part of a membrane complex involved in electron transport K03615 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003178 585.0
PJD3_k127_1560828_1 Part of a membrane complex involved in electron transport K03614 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 438.0
PJD3_k127_1560828_2 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 284.0
PJD3_k127_1560828_3 Part of a membrane complex involved in electron transport K03612 - - 0.00000000000000000000000000000000000000000000000000000000000000002248 230.0
PJD3_k127_1560828_4 Type IV Pilus-assembly protein W K02672 - - 0.0000000000000000000000000000000000000000000000000000000000000008001 232.0
PJD3_k127_1560828_5 Prokaryotic N-terminal methylation motif K02671 - - 0.00000000000000000000000000000000000746 142.0
PJD3_k127_1560828_6 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000001123 134.0
PJD3_k127_1560828_7 Tfp pilus assembly protein, tip-associated adhesin PilY1 K02674 - - 0.00000000000000000000000004065 120.0
PJD3_k127_1560828_8 Type II transport protein GspH K08084 - - 0.00000000000000000004455 99.0
PJD3_k127_1560828_9 Pilus assembly protein PilX K02673 - - 0.0000000000000000001544 96.0
PJD3_k127_1587719_0 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008705 376.0
PJD3_k127_1587719_1 Protein of unknown function - - - 0.00000000000000000000000000000000000000000000000000000000002751 225.0
PJD3_k127_1587719_2 Belongs to the UPF0307 family K09889 - - 0.0000000000000000000000000000000000005693 145.0
PJD3_k127_1591689_0 O-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003199 505.0
PJD3_k127_1591689_1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 352.0
PJD3_k127_1591689_2 COG3000 Sterol desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000002147 226.0
PJD3_k127_1607791_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 488.0
PJD3_k127_1607791_1 Vitamin B12 dependent methionine synthase, activation K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005633 305.0
PJD3_k127_162457_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 3.382e-219 686.0
PJD3_k127_162457_1 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009497 289.0
PJD3_k127_162457_2 GGDEF domain K13069 - 2.7.7.65 0.0000000000000000000000000000000007854 148.0
PJD3_k127_162457_3 PFAM UBA THIF-type NAD FAD binding K21029 - 2.7.7.80 0.00000000000000000000000000485 111.0
PJD3_k127_162457_4 TIGRFAM phosphate binding protein K02040 - - 0.00000000000000000001299 103.0
PJD3_k127_163822_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 2.752e-217 686.0
PJD3_k127_163822_1 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 394.0
PJD3_k127_163822_2 Transcriptional regulator K01420 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002312 278.0
PJD3_k127_163822_3 COG0226 ABC-type phosphate transport system, periplasmic component K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002421 274.0
PJD3_k127_1642333_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000156 273.0
PJD3_k127_1642333_1 adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000005578 229.0
PJD3_k127_1642333_2 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000001805 231.0
PJD3_k127_1642333_3 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000000009314 211.0
PJD3_k127_1642333_4 involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000004815 186.0
PJD3_k127_1642333_5 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000000005336 181.0
PJD3_k127_1642333_6 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000000008186 150.0
PJD3_k127_1642333_7 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000004713 134.0
PJD3_k127_1642333_8 - - - - 0.000000000000945 70.0
PJD3_k127_1642333_9 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000001692 58.0
PJD3_k127_1649115_0 PFAM Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326 471.0
PJD3_k127_1649115_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 370.0
PJD3_k127_1649115_2 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000005275 237.0
PJD3_k127_165298_0 Protein tyrosine kinase - - - 7.427e-197 640.0
PJD3_k127_165298_1 PFAM Type II secretion system protein E - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 306.0
PJD3_k127_1653707_0 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005783 559.0
PJD3_k127_1653707_1 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000009139 247.0
PJD3_k127_1653707_2 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000002491 147.0
PJD3_k127_1653707_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000003365 142.0
PJD3_k127_165540_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 2.075e-260 812.0
PJD3_k127_165540_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002826 547.0
PJD3_k127_165540_2 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 358.0
PJD3_k127_1656860_0 SpoVR family K06415 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 2.395e-254 791.0
PJD3_k127_1656860_1 Belongs to the UPF0229 family K09786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 543.0
PJD3_k127_1656860_2 PrkA AAA domain K07180 - - 0.00000000000000000000000000000000000000000000000000000000004014 205.0
PJD3_k127_1656860_3 - - - - 0.00000000000000000000000002977 110.0
PJD3_k127_1682231_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 1.957e-194 611.0
PJD3_k127_1682231_1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 443.0
PJD3_k127_1682231_2 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.000000000006779 67.0
PJD3_k127_1682231_3 HflC and HflK could regulate a protease K04087 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0016020,GO:0016021,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0031233,GO:0032991,GO:0043086,GO:0043170,GO:0044092,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050790,GO:0050896,GO:0065007,GO:0065009,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0098796,GO:0140096,GO:1901564 - 0.0000000001061 62.0
PJD3_k127_1683499_0 Beta-Casp domain K07576 - - 6.722e-204 643.0
PJD3_k127_1683499_1 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000001062 191.0
PJD3_k127_1683828_0 Type II secretion system (T2SS), protein K K02460 - - 0.000000000000000000000000000000000000000000000000003534 195.0
PJD3_k127_1683828_1 Type II secretion system (T2SS), protein J K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776 - 0.00000000000000000000000000000000000000000002756 168.0
PJD3_k127_1683828_2 involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.000023 51.0
PJD3_k127_1684024_0 FeS assembly protein SufB K09014 - - 3.034e-260 807.0
PJD3_k127_1684024_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483,K11183 - 2.7.3.9 3.485e-207 657.0
PJD3_k127_1684024_10 Domain of unknown function (DUF4398) - - - 0.000000000000000003466 89.0
PJD3_k127_1684024_12 GGDEF domain - - - 0.0001254 46.0
PJD3_k127_1684024_2 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 587.0
PJD3_k127_1684024_3 FeS assembly protein SufD K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 390.0
PJD3_k127_1684024_4 FeS assembly ATPase SufC K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006007 351.0
PJD3_k127_1684024_5 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004683 280.0
PJD3_k127_1684024_6 Domain of unknown function (DUF4398) - - - 0.00000000000000000000000000000000000000000000000000000000000001514 228.0
PJD3_k127_1684024_7 Response regulator, receiver K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000974 156.0
PJD3_k127_1684024_8 Domain of unknown function (DUF1840) - - - 0.00000000000000000000000000003367 119.0
PJD3_k127_1684024_9 Protein of unknown function (DUF1488) - - - 0.000000000000000000001933 98.0
PJD3_k127_1684146_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008986,GO:0009058,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576 2.7.9.2 4.601e-291 903.0
PJD3_k127_1684146_1 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 499.0
PJD3_k127_1684146_2 PFAM glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000002469 194.0
PJD3_k127_1707590_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 485.0
PJD3_k127_1707590_1 COGs COG0790 FOG TPR repeat SEL1 subfamily - - - 0.0000000000000000000002149 109.0
PJD3_k127_1707590_2 subunit of a heme lyase K02200 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009897,GO:0009986,GO:0009987,GO:0015035,GO:0015036,GO:0016020,GO:0016043,GO:0016491,GO:0016667,GO:0017004,GO:0022607,GO:0031224,GO:0031226,GO:0031233,GO:0031237,GO:0034622,GO:0043933,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0055114,GO:0065003,GO:0071840,GO:0071944,GO:0098552,GO:0098567 - 0.0003189 51.0
PJD3_k127_172563_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.273e-236 740.0
PJD3_k127_172563_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 4.259e-226 704.0
PJD3_k127_172563_10 Sporulation related domain K03749 - - 0.00000000000000007566 91.0
PJD3_k127_172563_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 427.0
PJD3_k127_172563_3 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 411.0
PJD3_k127_172563_4 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009831 351.0
PJD3_k127_172563_5 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 330.0
PJD3_k127_172563_6 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000003743 267.0
PJD3_k127_172563_7 Colicin V production protein K03558 - - 0.000000000000000000000000000000000000000000000000002032 186.0
PJD3_k127_172563_8 - - - - 0.000000000000000000000000000004603 124.0
PJD3_k127_172563_9 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000001974 106.0
PJD3_k127_1744086_0 His Kinase A (phospho-acceptor) domain K02484,K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000003732 273.0
PJD3_k127_1744086_1 Formyl transferase K00604 - 2.1.2.9 0.00000000000003661 76.0
PJD3_k127_1797865_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000002205 210.0
PJD3_k127_1797865_1 - - - - 0.00000000000000000000000000005161 120.0
PJD3_k127_1797865_2 PFAM peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000001505 113.0
PJD3_k127_1797865_3 Histidine kinase - - - 0.00000000000000000000002149 105.0
PJD3_k127_1797865_4 Cysteine-rich CPXCG - - - 0.00000000000000007637 82.0
PJD3_k127_1799139_0 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002249 256.0
PJD3_k127_1799139_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000007283 233.0
PJD3_k127_1799139_2 Zn-dependent peptidases K06972 - - 0.00000000000000000000000000000000000000003507 154.0
PJD3_k127_1799139_3 Protein of unknown function (DUF1499) - - - 0.00000000000000000000000000000000946 132.0
PJD3_k127_1799139_4 DNA topological change - - - 0.00000000000000000000000002143 117.0
PJD3_k127_1800639_0 XdhC and CoxI family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008101 337.0
PJD3_k127_1800639_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002264 277.0
PJD3_k127_1800639_2 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00000000000000000000000000000006017 133.0
PJD3_k127_1800639_3 Resolvase, N terminal domain - - - 0.0000003468 55.0
PJD3_k127_1812763_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 595.0
PJD3_k127_1812763_1 histidyl-tRNA aminoacylation K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000002709 163.0
PJD3_k127_1812763_2 protein conserved in bacteria K15539 - - 0.00000000004401 71.0
PJD3_k127_1837945_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000091 294.0
PJD3_k127_1837945_1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001412 273.0
PJD3_k127_1837945_2 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000000000000000001042 189.0
PJD3_k127_1837945_3 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000000000000000000000000000000000002427 179.0
PJD3_k127_1837945_4 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048027,GO:0070181,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000004451 137.0
PJD3_k127_1837945_5 membrane - - - 0.00000000000000000000000002802 121.0
PJD3_k127_1839156_0 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 471.0
PJD3_k127_1839156_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009330,GO:0009987,GO:0016020,GO:0016043,GO:0019897,GO:0019898,GO:0022402,GO:0030541,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0098813,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 421.0
PJD3_k127_1839156_2 PFAM EAL domain K21025 - - 0.0000000000000000000000000000000000000000000225 168.0
PJD3_k127_1861178_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009392 377.0
PJD3_k127_1861178_1 FOG TPR repeat - - - 0.000000000000000000000000000000000002262 145.0
PJD3_k127_1907654_0 TRAP-type C4-dicarboxylate transport system, large permease component K11690 GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015849,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098656,GO:1903825,GO:1905039 - 9.756e-227 709.0
PJD3_k127_1907654_1 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0008150,GO:0015711,GO:0015740,GO:0015849,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0071702 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 561.0
PJD3_k127_1907654_2 PFAM aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004616 403.0
PJD3_k127_1907654_3 TRAP-type C4-dicarboxylate transport system, small permease component K11689 GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015849,GO:0022857,GO:0034220,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098656,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005998 288.0
PJD3_k127_1907654_4 HIT domain - - - 0.000000000000000000005211 95.0
PJD3_k127_1907654_5 - - - - 0.00001323 47.0
PJD3_k127_194208_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009986,GO:0009987,GO:0016465,GO:0018995,GO:0022610,GO:0030430,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0050789,GO:0051082,GO:0051704,GO:0061077,GO:0065007,GO:0101031,GO:1990220,GO:2000535 - 1.616e-283 878.0
PJD3_k127_194208_1 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 576.0
PJD3_k127_194208_2 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000006428 202.0
PJD3_k127_194208_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000000007188 169.0
PJD3_k127_194208_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.0000000000000000000000000000000000000000002991 161.0
PJD3_k127_194208_5 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000001694 163.0
PJD3_k127_194208_6 PFAM FxsA cytoplasmic membrane protein K07113 - - 0.00000000000000000000000000000000000000024 154.0
PJD3_k127_194208_7 Divalent ion tolerance protein K03926 - - 0.0000000000000000000000000000001311 129.0
PJD3_k127_194208_8 ABC transporter transmembrane region K11085 - - 0.000000000001611 76.0
PJD3_k127_1965396_0 UreD urease accessory protein K03190 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004216 250.0
PJD3_k127_1965396_1 Opacity family porin protein K03286 - - 0.00000000000000000000000000000000000000000000000000007731 198.0
PJD3_k127_1965396_2 Urease, gamma subunit K01430 - 3.5.1.5 0.000000000000000000000000000000000006417 137.0
PJD3_k127_1965396_3 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.000000000000000000000000000000007538 137.0
PJD3_k127_1969426_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004501 576.0
PJD3_k127_1969426_1 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 487.0
PJD3_k127_1969426_2 Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis K03683 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 289.0
PJD3_k127_1969426_3 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000000000000004072 190.0
PJD3_k127_1978302_0 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 408.0
PJD3_k127_1978302_1 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000706 227.0
PJD3_k127_1978302_10 Mycolic acid cyclopropane synthetase K00574 - 2.1.1.79 0.0001746 44.0
PJD3_k127_1978302_2 Crp-like helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000001142 193.0
PJD3_k127_1978302_3 Protein of unknown function (DUF3185) - - - 0.00000000000000000000000000004154 118.0
PJD3_k127_1978302_4 Bacterial protein of unknown function (DUF883) - - - 0.0000000000000000000001115 100.0
PJD3_k127_1978302_5 OmpA-like transmembrane domain - - - 0.00000000000000000009649 95.0
PJD3_k127_1978302_6 - - - - 0.000000000000002219 76.0
PJD3_k127_1978302_7 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.000000000007344 71.0
PJD3_k127_1978302_8 PRC-barrel domain - - - 0.000000182 59.0
PJD3_k127_1981053_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003843 379.0
PJD3_k127_1981053_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 288.0
PJD3_k127_1981053_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.0000000000000000000000000000000000000000000003361 168.0
PJD3_k127_1981053_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000007976 141.0
PJD3_k127_1986684_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 393.0
PJD3_k127_1986684_1 Peptidase family M48 - - - 0.0000000000000000000002835 112.0
PJD3_k127_1997092_0 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 386.0
PJD3_k127_1997092_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002149 269.0
PJD3_k127_1997092_2 Type II secretory pathway, component ExeA - - - 0.00000000000000000000000000000000000000000000009732 188.0
PJD3_k127_1997092_3 alginic acid biosynthetic process - - - 0.000000003053 70.0
PJD3_k127_2003291_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 1.404e-299 940.0
PJD3_k127_2003291_1 Belongs to the UPF0225 family K09858 - - 0.0000000000000000000000000000000000000000002775 163.0
PJD3_k127_2017847_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372 - - 1.147e-244 770.0
PJD3_k127_2017847_1 - - - - 0.000000000000000000004211 96.0
PJD3_k127_2021307_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 0.0 1669.0
PJD3_k127_2021307_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K21308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 445.0
PJD3_k127_2021307_2 DMSO reductase anchor subunit (DmsC) K21309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 389.0
PJD3_k127_202160_0 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00651 - 2.3.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 546.0
PJD3_k127_202160_1 (ABC) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 439.0
PJD3_k127_202160_2 PFAM Major Facilitator Superfamily K08218 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009056 408.0
PJD3_k127_202160_3 Belongs to the ribose-phosphate pyrophosphokinase family K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002523 300.0
PJD3_k127_2024206_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.604e-272 844.0
PJD3_k127_2024206_1 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009521 277.0
PJD3_k127_2024206_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000385 231.0
PJD3_k127_2024206_3 RNA-binding protein K07574 - - 0.0000000000000000000000000008018 115.0
PJD3_k127_2024206_4 Domain of unknown function (DUF4149) - - - 0.000000000000000000000000003009 119.0
PJD3_k127_2026246_0 carbohydrate transport K11688,K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001728 326.0
PJD3_k127_2026246_1 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001587 258.0
PJD3_k127_2026246_2 TRAP-type C4-dicarboxylate transport system, small permease component - - - 0.00000003111 57.0
PJD3_k127_2038601_0 Spermidine synthase K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 629.0
PJD3_k127_2038601_1 4 iron, 4 sulfur cluster binding K02574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000438 512.0
PJD3_k127_2038601_2 Cytochrome C and Quinol oxidase polypeptide I - - - 0.000000000000000000000000000000000000000000000000000000000002309 213.0
PJD3_k127_2038601_4 - - - - 0.000000000000000000000000000000000006156 143.0
PJD3_k127_2038601_5 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000002765 97.0
PJD3_k127_2038601_6 - - - - 0.0000000000000003944 83.0
PJD3_k127_2040751_0 protein conserved in bacteria K11893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 484.0
PJD3_k127_2040751_1 Type VI secretion protein IcmF C-terminal K11891 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 300.0
PJD3_k127_2040751_2 Type VI secretion K07169,K11894,K11913 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005393 254.0
PJD3_k127_2040751_3 Type VI secretion system protein DotU K11892 - - 0.00000000000000000000000000000000000000000000000000000000000003874 224.0
PJD3_k127_2040751_4 TIGRFAM type VI secretion lipoprotein, VC_A0113 family K11906 - - 0.0000000000000000000000000004328 119.0
PJD3_k127_2047835_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 489.0
PJD3_k127_2047835_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 468.0
PJD3_k127_2047835_2 ATPases associated with a variety of cellular activities K02003,K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 294.0
PJD3_k127_2047835_3 Polysaccharide deacetylase K11931 - - 0.00000000000000000000000000000000000000000000000000000000002316 222.0
PJD3_k127_2047835_4 Exports the biofilm adhesin polysaccharide poly-beta- 1,6-N-acetyl-D-glucosamine (PGA) across the outer membrane. The PGA transported seems to be partially N-deacetylated since N- deacetylation of PGA by PgaB is needed for PGA export through the PgaA porin K11935 - - 0.000000000000000001054 99.0
PJD3_k127_2047835_5 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.000000000000000002875 86.0
PJD3_k127_2056384_0 COG0642 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000387 387.0
PJD3_k127_2056384_1 cheY-homologous receiver domain K03413 - - 0.000000000000000000006552 96.0
PJD3_k127_2056724_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 6.312e-293 910.0
PJD3_k127_2075072_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2144.0
PJD3_k127_2075072_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1454.0
PJD3_k127_2075072_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 343.0
PJD3_k127_2075072_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003562 319.0
PJD3_k127_2075072_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001071 258.0
PJD3_k127_2075072_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.000000000000000000000000000000000000000000000000000000000000000000001073 240.0
PJD3_k127_2075072_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000005978 178.0
PJD3_k127_2075072_7 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03073 GO:0002790,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000000001728 106.0
PJD3_k127_2075072_8 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000007479 79.0
PJD3_k127_2075072_9 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000003282 57.0
PJD3_k127_208281_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0 1606.0
PJD3_k127_208281_1 cation transport ATPase K17686 - 3.6.3.54 0.0 1072.0
PJD3_k127_208281_10 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000005407 124.0
PJD3_k127_208281_2 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007059 359.0
PJD3_k127_208281_3 COGs COG1136 ABC-type antimicrobial peptide transport system ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002168 276.0
PJD3_k127_208281_4 formate dehydrogenase K00127 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000511 278.0
PJD3_k127_208281_5 TIGRFAM 40-residue YVTN family beta-propeller repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001798 255.0
PJD3_k127_208281_6 COG2010 Cytochrome c, mono- and diheme variants - - - 0.0000000000000000000000000000000000000000004582 162.0
PJD3_k127_208281_7 Transcriptional - - - 0.00000000000000000000000000000000000004411 147.0
PJD3_k127_208281_8 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000001032 156.0
PJD3_k127_208281_9 Cytochrome c - - - 0.0000000000000000000000000005556 117.0
PJD3_k127_2085130_0 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 8.364e-196 617.0
PJD3_k127_2085130_1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002646 346.0
PJD3_k127_2085130_2 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000003881 145.0
PJD3_k127_2085130_3 PFAM cytochrome c, class I K08738 - - 0.0000000000000000000000004908 107.0
PJD3_k127_2085130_4 Polymer-forming cytoskeletal - - - 0.00000000000000000006287 94.0
PJD3_k127_2093755_0 NnrU protein - - - 0.000000000000000000000000000000000000000000000000000000000000006472 221.0
PJD3_k127_2093755_1 Belongs to the peptidase S8 family - - - 0.00000000000000000002064 106.0
PJD3_k127_2107659_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.158e-230 721.0
PJD3_k127_2107659_1 TIGRFAM Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006733 571.0
PJD3_k127_2107659_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000001227 137.0
PJD3_k127_2107659_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000002581 111.0
PJD3_k127_2107659_4 Cell shape-determining protein K03570 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0043621,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944,GO:0071963 - 0.00000000000000002367 85.0
PJD3_k127_2113547_0 Belongs to the ParA family K04562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 377.0
PJD3_k127_2113547_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 310.0
PJD3_k127_2113547_2 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002187 269.0
PJD3_k127_2113547_3 cheY-homologous receiver domain K03413 - - 0.00000000000000000000000000000000000000000000000000000000000000000454 227.0
PJD3_k127_2113547_4 PFAM GTP-binding signal recognition particle SRP54 G- domain K02404 - - 0.00000000000000000000000000000000000000000000000000000002313 217.0
PJD3_k127_2113547_5 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.0000000000000000000000000000000000001581 146.0
PJD3_k127_2114493_0 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 357.0
PJD3_k127_2114493_1 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 318.0
PJD3_k127_2114493_2 TIGRFAM cytochrome c oxidase accessory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002263 253.0
PJD3_k127_2114493_3 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 0.000000000000000000000000000000000000000000000004423 174.0
PJD3_k127_2114493_4 Cbb3-type cytochrome oxidase component FixQ K00407 - - 0.000000000000001832 81.0
PJD3_k127_2122397_0 sulphate transporter K03321 - - 1.376e-222 706.0
PJD3_k127_2127283_0 Type II secretion system K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 586.0
PJD3_k127_2127283_1 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 379.0
PJD3_k127_2127283_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000001266 187.0
PJD3_k127_2129020_0 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002532 342.0
PJD3_k127_2129020_1 domain, Protein K03112 - - 0.00000000000000000000000000000000000000001303 172.0
PJD3_k127_2129020_2 - - - - 0.000000000000000002529 88.0
PJD3_k127_2131124_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 557.0
PJD3_k127_2131124_1 MazG family K02499,K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 296.0
PJD3_k127_2131124_2 Lipocalin-like domain - - - 0.00000000000000004905 82.0
PJD3_k127_2131124_3 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000005584 83.0
PJD3_k127_2145297_0 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 1.4e-223 696.0
PJD3_k127_2145297_1 Catalyzes cross-linking of the peptidoglycan cell wall K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 5.399e-208 666.0
PJD3_k127_2145297_10 Cell shape-determining protein K03570 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007163,GO:0008150,GO:0008360,GO:0009987,GO:0016020,GO:0016021,GO:0022603,GO:0022604,GO:0031224,GO:0031226,GO:0043621,GO:0044425,GO:0044459,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071944,GO:0071963 - 0.0000000000000000000000000000000000000000000000000000000000000007679 230.0
PJD3_k127_2145297_11 Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins K03571 - - 0.000000000000000000000000000000000000000000000001462 178.0
PJD3_k127_2145297_12 Histidine triad (Hit) protein - - - 0.000000000000000000000000000000000000003681 145.0
PJD3_k127_2145297_14 Belongs to the UPF0250 family K09158 - - 0.0000000000000000000001575 101.0
PJD3_k127_2145297_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009203 494.0
PJD3_k127_2145297_3 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006041 467.0
PJD3_k127_2145297_4 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 451.0
PJD3_k127_2145297_5 PFAM Aminotransferase, class IV K00824 - 2.6.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 323.0
PJD3_k127_2145297_6 Lytic murein transglycosylase K08305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 320.0
PJD3_k127_2145297_7 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000000000002099 256.0
PJD3_k127_2145297_8 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000007875 237.0
PJD3_k127_2145297_9 Domain of unknown function (DUF4279) - - - 0.00000000000000000000000000000000000000000000000000000000000000001682 226.0
PJD3_k127_2172044_0 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000001702 210.0
PJD3_k127_2172044_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000002851 90.0
PJD3_k127_2173624_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 4.728e-304 957.0
PJD3_k127_2173624_1 Transcriptional regulator K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007518 375.0
PJD3_k127_2173624_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000001721 237.0
PJD3_k127_2173624_3 E3 Ubiquitin ligase - - - 0.000000000000000000000000000000000000000000000000000001408 201.0
PJD3_k127_2173624_4 O-Antigen ligase K02847 - - 0.000000000000000000000000000000000000000004145 171.0
PJD3_k127_2173624_5 - - - - 0.000000000000006655 76.0
PJD3_k127_2199140_0 Transposase K07486 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007492 399.0
PJD3_k127_2199140_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 338.0
PJD3_k127_2199140_2 signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001778 293.0
PJD3_k127_2199140_3 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000001757 218.0
PJD3_k127_2199140_4 Cytochrome c mono- and diheme variants - - - 0.0000000000000000000000000000000000000000000003376 172.0
PJD3_k127_2199140_5 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.000000000000000000000000000000000000000000003022 174.0
PJD3_k127_2199140_6 - - - - 0.00000000000000000000000000000000000000000002283 181.0
PJD3_k127_2199140_7 Peptidase family M23 - - - 0.000000000000000000000000000003861 128.0
PJD3_k127_2216999_0 PFAM AMP-dependent synthetase and ligase K01897,K22319 - 6.1.3.1,6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000541 470.0
PJD3_k127_2216999_1 Cytochrome c K02305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002003 264.0
PJD3_k127_2216999_2 PFAM cytochrome c oxidase subunit I K04561 - 1.7.2.5 0.0000000000000000000000001746 107.0
PJD3_k127_2216999_5 BNR Asp-box repeat - - - 0.0000000001129 65.0
PJD3_k127_2216999_6 COG0810 Periplasmic protein TonB links inner and outer membranes K03646 - - 0.0001027 53.0
PJD3_k127_2229116_0 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 387.0
PJD3_k127_2229116_1 Multi-copper - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 368.0
PJD3_k127_2229116_2 transcriptional regulator, Rrf2 family K13771 - - 0.00000000000000000000000000000000000000003412 157.0
PJD3_k127_2230035_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 2.94e-215 690.0
PJD3_k127_2230035_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000002151 292.0
PJD3_k127_2230035_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000001722 210.0
PJD3_k127_2230035_3 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.00000000000000000000000000000000000000002564 156.0
PJD3_k127_2230035_4 4Fe-4S dicluster domain K00184 - - 0.00000000000003877 74.0
PJD3_k127_223439_0 COG0835 Chemotaxis signal transduction protein K03415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 379.0
PJD3_k127_223439_1 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 289.0
PJD3_k127_223439_2 protein conserved in bacteria K09931 - - 0.000000000000000000000000000000000000000000003577 171.0
PJD3_k127_223439_3 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000000006279 61.0
PJD3_k127_223439_4 bacterial-type flagellum organization K02398 - - 0.00005114 50.0
PJD3_k127_2241050_0 TIGRFAM dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 496.0
PJD3_k127_2241050_1 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 464.0
PJD3_k127_2241050_10 response regulator receiver K02658 - - 0.000000000000000000000000000000000000000000000001905 175.0
PJD3_k127_2241050_11 Chemotaxis signal transduction protein K02659 - - 0.0000000000000000000000000000000000000009401 154.0
PJD3_k127_2241050_12 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000001198 118.0
PJD3_k127_2241050_13 Oxidoreductase FAD-binding domain K02823 - - 0.00000000000000000007025 90.0
PJD3_k127_2241050_14 NusG domain II - - - 0.0000000000000003851 83.0
PJD3_k127_2241050_2 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002837 431.0
PJD3_k127_2241050_3 chemotaxis, protein K02660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008661 396.0
PJD3_k127_2241050_4 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 362.0
PJD3_k127_2241050_5 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005715 244.0
PJD3_k127_2241050_6 response regulator K02657 - - 0.000000000000000000000000000000000000000000000000000000000000001985 219.0
PJD3_k127_2241050_7 phosphoribosyltransferase K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000242 212.0
PJD3_k127_2241050_8 Heptaprenyl diphosphate synthase component I K00805 - 2.5.1.30 0.0000000000000000000000000000000000000000000000000000004475 198.0
PJD3_k127_2241050_9 Periplasmic protein TonB links inner and outer membranes K03832 - - 0.00000000000000000000000000000000000000000000000004662 190.0
PJD3_k127_2291901_0 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 334.0
PJD3_k127_2291901_1 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 289.0
PJD3_k127_2291901_2 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000001122 189.0
PJD3_k127_2291901_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000001338 174.0
PJD3_k127_2291901_4 Bacterial Fe(2+) trafficking - - - 0.0000000000000000000000000000000003372 134.0
PJD3_k127_2291901_5 Belongs to the HesB IscA family K15724 - - 0.000000000000000000000000000001934 124.0
PJD3_k127_2291901_6 nitric oxide dioxygenase activity K07140 - - 0.0000000000000000000001213 102.0
PJD3_k127_2291901_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.0000000000001284 72.0
PJD3_k127_2291901_8 Pentapeptide repeats (9 copies) - - - 0.0000000006086 64.0
PJD3_k127_2292104_0 Predicted methyltransferase regulatory domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005165 354.0
PJD3_k127_2292104_1 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000000000000003424 179.0
PJD3_k127_2292104_2 DsrE/DsrF-like family - - - 0.000000000000000000000000000000000000001579 150.0
PJD3_k127_2292104_4 protein conserved in bacteria K09790 - - 0.000000000000000000000000000000000003817 141.0
PJD3_k127_2292104_5 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000001558 122.0
PJD3_k127_2292104_6 Lysine methyltransferase - - - 0.0000000000000000000001826 98.0
PJD3_k127_2292104_7 YHS domain - - - 0.000000000000000003646 86.0
PJD3_k127_2292104_8 AntiSigma factor - GO:0000988,GO:0000989,GO:0003674,GO:0005488,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009593,GO:0009628,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0042221,GO:0043167,GO:0043169,GO:0043934,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051606,GO:0051775,GO:0051776,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.000000000001458 71.0
PJD3_k127_2292104_9 Protein of unknown function (DUF2892) - - - 0.00004407 50.0
PJD3_k127_2306439_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K02484,K02660,K07653,K07654,K11617 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005515,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0035556,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070297,GO:0070298,GO:0071704,GO:0140096,GO:1901564,GO:1902531,GO:1902532 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 320.0
PJD3_k127_2306439_1 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 294.0
PJD3_k127_2306439_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019538,GO:0019941,GO:0030163,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000155 250.0
PJD3_k127_2306439_3 Domain of unknown function (DUF4154) - - - 0.00000000000000009645 87.0
PJD3_k127_2315970_0 - - - - 0.00000000000000000000000000000000000000000902 158.0
PJD3_k127_2315970_1 PFAM peptidase M16 domain protein - - - 0.0000000000000000000000000000176 134.0
PJD3_k127_2320488_0 PFAM FAD dependent oxidoreductase K03153 - 1.4.3.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 355.0
PJD3_k127_2320488_1 PFAM pfkB family carbohydrate kinase K00846 - 2.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000003718 261.0
PJD3_k127_2320488_2 belongs to the Fur family K09826 - - 0.0000000000000000000000000000000000000003095 154.0
PJD3_k127_2320488_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000002857 126.0
PJD3_k127_2320488_4 Protein of unknown function (DUF3301) - - - 0.000000000000000000009764 96.0
PJD3_k127_2320488_5 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000001659 92.0
PJD3_k127_2320488_6 Cysteine-rich CWC - - - 0.00000000000000001023 84.0
PJD3_k127_2321948_0 FAD linked - - - 6.743e-320 995.0
PJD3_k127_2322555_0 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.00000000000000000000000000000000000000000000000000000000003509 217.0
PJD3_k127_2322555_1 membrane - - - 0.00000000000000000000000000000000000000000000000001733 187.0
PJD3_k127_2322555_10 PFAM MerC mercury resistance protein K19058 - - 0.000002584 54.0
PJD3_k127_2322555_2 MerR, DNA binding K08365 - - 0.00000000000000000000000000000000000000000000000007276 183.0
PJD3_k127_2322555_3 mercury ion transmembrane transporter activity K07213 - - 0.000000000000000000000000000000000000000000005796 168.0
PJD3_k127_2322555_4 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000000000000000002856 127.0
PJD3_k127_2322555_5 MerT mercuric transport protein K08363 - - 0.0000000000000000000000000000003823 126.0
PJD3_k127_2322555_6 Cytochrome c class I - - - 0.00000000000000000000000000000126 131.0
PJD3_k127_2322555_7 Thioredoxin domain - - - 0.00000000000000000000000007692 109.0
PJD3_k127_2322555_8 COG2010 Cytochrome c, mono- and diheme variants - - - 0.00000000000000000003071 91.0
PJD3_k127_2322555_9 Mercury scavenger that specifically binds to one mercury ion and which passes it to the mercuric reductase (MerA) via the MerT protein K08364 - - 0.00000000000000009898 83.0
PJD3_k127_2375690_0 epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 511.0
PJD3_k127_2375690_1 Uncharacterized conserved protein (DUF2075) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 334.0
PJD3_k127_2383477_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 589.0
PJD3_k127_2383477_1 Rhodanese Homology Domain - - - 0.000000000001104 74.0
PJD3_k127_2389883_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003623 411.0
PJD3_k127_2389883_1 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000001986 246.0
PJD3_k127_2389883_2 COG0241 Histidinol phosphatase and related phosphatases K03273 - 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000000000000000009081 206.0
PJD3_k127_2389883_3 Phosphoribosyl-ATP pyrophosphohydrolase - - - 0.000000000000000000000000000000000000000000001711 166.0
PJD3_k127_2396521_0 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000406 274.0
PJD3_k127_2396521_1 Domain of unknown function (DUF4188) - - - 0.000000000000000000000000000000000000000000000000000000000000007231 219.0
PJD3_k127_2396521_2 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000003056 178.0
PJD3_k127_2396521_3 - - - - 0.00000000000000001538 95.0
PJD3_k127_2396521_4 copper resistance K07233 - - 0.00000000000000002588 81.0
PJD3_k127_2396521_5 procollagen-proline 4-dioxygenase activity K00472,K11136 GO:0000018,GO:0000723,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009892,GO:0009987,GO:0010569,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0032200,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0034645,GO:0036297,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048229,GO:0048364,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070716,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:1901360,GO:1901576,GO:2000779,GO:2001020 1.14.11.2,3.6.4.12 0.00000005235 63.0
PJD3_k127_241119_0 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 431.0
PJD3_k127_241119_1 Catalyzes the ATP-dependent phosphorylation of the 3- deoxy-D-manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position K11211 - 2.7.1.166 0.0000000000000000000000000000000000000000000000000000001459 202.0
PJD3_k127_241119_2 PFAM Three-deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000702 99.0
PJD3_k127_2428952_0 Double sensory domain of two-component sensor kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 365.0
PJD3_k127_2438207_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002566 432.0
PJD3_k127_2438207_1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 396.0
PJD3_k127_2438207_2 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000006443 170.0
PJD3_k127_2438207_3 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000002646 78.0
PJD3_k127_2438207_4 Cytochrome c - - - 0.00000000006344 68.0
PJD3_k127_2440531_0 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004407 556.0
PJD3_k127_2440531_1 PFAM short-chain dehydrogenase reductase SDR K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002319 313.0
PJD3_k127_2440531_2 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005715 244.0
PJD3_k127_2440531_3 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000005266 233.0
PJD3_k127_2440531_4 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000004647 205.0
PJD3_k127_2440531_5 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 GO:0003674,GO:0003824,GO:0004150,GO:0005488,GO:0005515,GO:0016829,GO:0016830,GO:0016832,GO:0042802 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000000000000000000000001249 175.0
PJD3_k127_2440531_6 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.000000000000000000000000000000000000000001919 160.0
PJD3_k127_2440531_7 - - - - 0.000000000000000000000000000000000001499 144.0
PJD3_k127_2440531_8 sulfur carrier activity K04085 - - 0.0000000000000000000000002017 107.0
PJD3_k127_2440531_9 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000000000000000006187 91.0
PJD3_k127_245030_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 337.0
PJD3_k127_245030_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000002528 237.0
PJD3_k127_245030_2 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000006245 175.0
PJD3_k127_2468293_0 COG1194 A G-specific DNA glycosylase K03575 GO:0003674,GO:0003824,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 407.0
PJD3_k127_2468293_1 PFAM AsmA family protein K07289 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008951 397.0
PJD3_k127_2468293_2 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000682 259.0
PJD3_k127_2468293_3 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000005922 216.0
PJD3_k127_2468293_4 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000002622 136.0
PJD3_k127_2468293_5 Resolvase - - - 0.00000001942 56.0
PJD3_k127_2508099_0 COG1734 DnaK suppressor protein K06204 - - 0.00000000000000000000002639 109.0
PJD3_k127_2508099_1 - - - - 0.00000000000000000004784 92.0
PJD3_k127_2508099_2 HAD-superfamily hydrolase, subfamily IIB - - - 0.00000000000000002255 84.0
PJD3_k127_2508099_3 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.173,2.1.1.264 0.00000000000008456 72.0
PJD3_k127_2508099_5 cheY-homologous receiver domain - - - 0.00002753 52.0
PJD3_k127_2517878_0 Belongs to the aconitase IPM isomerase family K01682 - 4.2.1.3,4.2.1.99 0.0 1277.0
PJD3_k127_2517878_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0002097,GO:0002098,GO:0002143,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 474.0
PJD3_k127_2517878_2 LysR family K21703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 352.0
PJD3_k127_2517878_3 High frequency lysogenization protein hflD homolog K07153 - - 0.0000000000000000000000000000000000000000000000000001678 192.0
PJD3_k127_2520639_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 8.922e-222 692.0
PJD3_k127_2520639_1 pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 366.0
PJD3_k127_2520639_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000009827 266.0
PJD3_k127_2553188_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 612.0
PJD3_k127_2580344_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 2.254e-271 842.0
PJD3_k127_2580344_1 general secretion pathway protein D K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 616.0
PJD3_k127_2580344_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 484.0
PJD3_k127_2580344_3 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 433.0
PJD3_k127_2580344_4 PFAM Type II secretion system protein E K02454 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 387.0
PJD3_k127_2580344_5 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000000000001554 196.0
PJD3_k127_2580344_6 General secretion pathway protein C K02452 - - 0.00000000000000000000000000000000000000000007875 172.0
PJD3_k127_2580344_7 Protein of unknown function (DUF1566) - - - 0.00000000000000000000000000009634 122.0
PJD3_k127_2580344_8 domain, Protein - - - 0.00000000000000000000000005337 117.0
PJD3_k127_2587298_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 568.0
PJD3_k127_2587298_1 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 421.0
PJD3_k127_2587298_2 ABC transporter ATP-binding protein K06861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000608 353.0
PJD3_k127_2587298_3 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 325.0
PJD3_k127_2587298_4 Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000000000000000000000000000000000051 252.0
PJD3_k127_2587298_5 Sigma 54 modulation protein K05808 - - 0.000000000000000000000000000000000000005826 148.0
PJD3_k127_2587298_6 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm K09774 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009279,GO:0010876,GO:0015920,GO:0016020,GO:0017089,GO:0019867,GO:0030288,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0042597,GO:0042802,GO:0044462,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0071702,GO:0071944,GO:1901264 - 0.00000000000000000000002317 107.0
PJD3_k127_2587298_7 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000001068 69.0
PJD3_k127_2587298_8 methylated-DNA-[protein]-cysteine S-methyltransferase activity K00567 - 2.1.1.63 0.0000003037 53.0
PJD3_k127_2590249_0 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 1.368e-280 868.0
PJD3_k127_2590249_1 PFAM ABC transporter K06158 - - 2.043e-222 702.0
PJD3_k127_2590249_2 ABC transporter, ATP-binding protein K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 406.0
PJD3_k127_2590249_3 ATPases associated with a variety of cellular activities K11963 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 347.0
PJD3_k127_2590249_4 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000688 141.0
PJD3_k127_2596170_0 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 308.0
PJD3_k127_2615862_0 Belongs to the RtcB family K14415 - 6.5.1.3 4.517e-231 722.0
PJD3_k127_2615862_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003365 353.0
PJD3_k127_2615862_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000009701 254.0
PJD3_k127_2615862_3 Histidine kinase K05962 - 2.7.13.1 0.000000000000000000000000000000000000000000000000000000000000000000000000403 275.0
PJD3_k127_2615862_4 Probable RNA and SrmB- binding site of polymerase A K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000001544 179.0
PJD3_k127_2646706_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 541.0
PJD3_k127_2646706_1 thiamine transport K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 408.0
PJD3_k127_2646706_2 iron ion homeostasis K02012 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000001143 256.0
PJD3_k127_2646706_3 Cupin - - - 0.00000000000000000000000000000000000000000000000006193 182.0
PJD3_k127_2646706_4 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000002802 119.0
PJD3_k127_2646706_5 - - - - 0.000000000001128 71.0
PJD3_k127_2649094_0 PFAM NAD-dependent epimerase dehydratase K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 583.0
PJD3_k127_2649094_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 490.0
PJD3_k127_2649094_2 PFAM Citrate transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 390.0
PJD3_k127_2687683_0 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000609 556.0
PJD3_k127_2687683_1 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily K08699 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008270,GO:0009987,GO:0016043,GO:0022607,GO:0042802,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071840 - 0.0000000000000000000000000000000000000000000000000000000000000000000004994 241.0
PJD3_k127_2687683_2 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000008389 202.0
PJD3_k127_2687683_3 NfeD-like C-terminal, partner-binding K07340 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000008708 132.0
PJD3_k127_2695174_0 Chemotaxis sensory transducer K03776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008124 374.0
PJD3_k127_2695174_1 Sh3 type 3 domain protein K01361 - 3.4.21.96 0.000000000000000000000000000000000000000001332 166.0
PJD3_k127_2695174_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000009559 147.0
PJD3_k127_2707605_0 metallophosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 419.0
PJD3_k127_2707605_1 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 296.0
PJD3_k127_2707605_2 Sigma-70, region 4 K03088 - - 0.00000000000000000001717 98.0
PJD3_k127_2707605_3 Sel1-like repeats. - - - 0.000000001154 62.0
PJD3_k127_2730827_0 FAD linked oxidase K00104 - 1.1.3.15 3.619e-233 730.0
PJD3_k127_2730827_1 PFAM aminotransferase class V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.093e-204 642.0
PJD3_k127_2730827_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 437.0
PJD3_k127_2730827_3 FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 368.0
PJD3_k127_2730827_4 protein conserved in bacteria - - - 0.000000000000000000000000000000000008032 141.0
PJD3_k127_2730827_5 COG0534 Na -driven multidrug efflux pump K03327 - - 0.00000000000000000000001246 101.0
PJD3_k127_2736320_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 576.0
PJD3_k127_2736320_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003893 485.0
PJD3_k127_2736320_10 - - - - 0.0000000000000000000000000003749 123.0
PJD3_k127_2736320_11 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.0000000000000000000001332 108.0
PJD3_k127_2736320_2 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007381 406.0
PJD3_k127_2736320_3 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007613 382.0
PJD3_k127_2736320_4 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 364.0
PJD3_k127_2736320_5 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003153 292.0
PJD3_k127_2736320_6 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001417 282.0
PJD3_k127_2736320_7 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000002686 199.0
PJD3_k127_2736320_8 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000006041 176.0
PJD3_k127_2736320_9 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000000000000000002581 151.0
PJD3_k127_2739909_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000001191 248.0
PJD3_k127_2739909_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000001431 238.0
PJD3_k127_2739909_2 PFAM cytochrome c - - - 0.0000000000000000000000000000000000000000000000000002224 192.0
PJD3_k127_2739909_3 Cyclic nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000003227 181.0
PJD3_k127_2739909_4 cytochrome - - - 0.00000000000000000000001312 104.0
PJD3_k127_2760878_0 PFAM asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004179 557.0
PJD3_k127_2760878_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006947 419.0
PJD3_k127_2760878_10 Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000008233 162.0
PJD3_k127_2760878_11 Polysaccharide biosynthesis/export protein K01991 - - 0.00000000000000000000000000000000000001625 150.0
PJD3_k127_2760878_12 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000002266 161.0
PJD3_k127_2760878_13 PFAM lipopolysaccharide biosynthesis protein K08253 - 2.7.10.2 0.00000000000000000000000001566 120.0
PJD3_k127_2760878_14 Lipopolysaccharide biosynthesis protein - - - 0.0000000000000000002127 100.0
PJD3_k127_2760878_15 O-antigen ligase like membrane protein - - - 0.00000000000000006928 94.0
PJD3_k127_2760878_2 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 342.0
PJD3_k127_2760878_3 Glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002269 257.0
PJD3_k127_2760878_4 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000008648 233.0
PJD3_k127_2760878_5 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000734 226.0
PJD3_k127_2760878_6 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000001284 193.0
PJD3_k127_2760878_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000002433 192.0
PJD3_k127_2760878_8 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000001464 181.0
PJD3_k127_2760878_9 Extracellular repeat protein, HAF family - - - 0.00000000000000000000000000000000000000000007563 175.0
PJD3_k127_2779457_0 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 1.162e-197 623.0
PJD3_k127_2779457_1 Sodium/hydrogen exchanger family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005874 511.0
PJD3_k127_2779457_2 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K18800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 428.0
PJD3_k127_2779457_3 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 370.0
PJD3_k127_2779457_4 Belongs to the UPF0149 family K09895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000002644 159.0
PJD3_k127_2779457_5 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000009449 98.0
PJD3_k127_2793595_0 Conserved carboxylase domain K01960 - 6.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 555.0
PJD3_k127_2793595_1 Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene) K09880 - 3.1.3.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008889 289.0
PJD3_k127_2793595_2 Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway K08967 - 1.13.11.53,1.13.11.54 0.0000000000000000000000000000000000000000000000000000000000000000000000003539 250.0
PJD3_k127_2793595_3 Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) K08964 - 4.2.1.109 0.0000000000000000000000000000000000000000000000000000001429 197.0
PJD3_k127_2809484_0 2-methylcitrate dehydratase K01720 - 4.2.1.79 9.93e-200 632.0
PJD3_k127_2809484_1 Belongs to the citrate synthase family K01659 GO:0003674,GO:0003824,GO:0004108,GO:0006082,GO:0006091,GO:0006113,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016740,GO:0016746,GO:0016829,GO:0016830,GO:0016833,GO:0016999,GO:0017144,GO:0019541,GO:0019679,GO:0019752,GO:0032787,GO:0036440,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0046459,GO:0046912,GO:0050440,GO:0055114,GO:0071704 2.3.3.5 0.000000000000000000000000000000000000000000000000008542 183.0
PJD3_k127_2809484_2 also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity K01659 - 2.3.3.5 0.00000000000000000000000000006112 120.0
PJD3_k127_2836822_0 ABC transporter transmembrane region K06148 - - 1.821e-244 768.0
PJD3_k127_2836822_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 1.378e-225 714.0
PJD3_k127_2836822_2 TraB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 509.0
PJD3_k127_2836822_3 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008492 446.0
PJD3_k127_2836822_4 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008362 416.0
PJD3_k127_2836822_5 T6A_YjeE tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 GO:0000166,GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043531,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 - 0.000000000000000000001683 95.0
PJD3_k127_2836822_6 sister chromatid segregation - - - 0.0000000000003057 72.0
PJD3_k127_2840481_0 Pyridoxal-dependent decarboxylase conserved domain K13745 - 4.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 601.0
PJD3_k127_2840481_1 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000462 279.0
PJD3_k127_2840481_2 DsrE/DsrF-like family K06039,K07092 - - 0.0000000000000000002133 92.0
PJD3_k127_2862100_0 PFAM histone deacetylase superfamily K04768 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 409.0
PJD3_k127_2862100_1 M18 family aminopeptidase K01267 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008270,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.11.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001809 277.0
PJD3_k127_2895974_0 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000004675 201.0
PJD3_k127_2895974_1 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000001674 119.0
PJD3_k127_2895974_2 - - - - 0.000000000000000000000000003811 128.0
PJD3_k127_2895974_3 SurA N-terminal domain - - - 0.00000000502 59.0
PJD3_k127_2899225_0 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008128 330.0
PJD3_k127_2899225_1 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008622 316.0
PJD3_k127_2899225_2 Protein of unknown function (DUF3565) - - - 0.0000000000000000000000002911 106.0
PJD3_k127_2899225_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000001598 76.0
PJD3_k127_2901886_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 391.0
PJD3_k127_2901886_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 282.0
PJD3_k127_2901886_2 PFAM MucB RseB K03598 - - 0.000000000000000000000000000000000000000000000000000000000000000008972 236.0
PJD3_k127_2901886_3 PFAM Positive regulator of sigma(E) RseC MucC K03803 - - 0.00000000000000851 79.0
PJD3_k127_2901886_4 An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E K03597 GO:0000988,GO:0000989,GO:0003674,GO:0008150,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.0000000000007855 78.0
PJD3_k127_2906362_0 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 515.0
PJD3_k127_2906362_1 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.0000000000000000000000000000003232 125.0
PJD3_k127_2912959_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 600.0
PJD3_k127_2912959_1 cAMP phosphodiesterases class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002006 283.0
PJD3_k127_2926529_0 Domain of unknown function DUF11 - - - 1.069e-225 738.0
PJD3_k127_2926529_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 512.0
PJD3_k127_2926529_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007096 344.0
PJD3_k127_2926529_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 304.0
PJD3_k127_2926529_4 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000000000002384 181.0
PJD3_k127_2926529_5 Biopolymer transport protein ExbD/TolR - - - 0.00000000000000000000000000000000000000000001074 167.0
PJD3_k127_2926529_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000001144 169.0
PJD3_k127_2926529_7 - - - - 0.00000000000000000000003137 101.0
PJD3_k127_2957759_0 Spondin_N - - - 0.00000000000000000000000000000000000000000000000008625 184.0
PJD3_k127_2957759_1 Cytochrome c biogenesis protein - - - 0.000000000000000000000000000000000000000000000005497 177.0
PJD3_k127_2957759_2 heme oxygenase (decyclizing) activity - - - 0.000000000000000000000000000001715 125.0
PJD3_k127_2957759_3 - - - - 0.000000000000000000000001146 109.0
PJD3_k127_2962941_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 365.0
PJD3_k127_2962941_1 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 378.0
PJD3_k127_2962941_2 heat shock protein binding - - - 0.000000000000000000000000000000000000003548 152.0
PJD3_k127_2962941_3 - - - - 0.0000000000006313 75.0
PJD3_k127_2962941_4 metallopeptidase activity K01113,K09607 - 3.1.3.1 0.00001304 59.0
PJD3_k127_2974183_0 PFAM ThiJ PfpI - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 323.0
PJD3_k127_2974183_1 Protein of unknown function (DUF4242) - - - 0.00000005937 54.0
PJD3_k127_2974183_2 Cytochrome c554 and c-prime - - - 0.00009516 52.0
PJD3_k127_2975351_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 3.689e-281 877.0
PJD3_k127_2975351_1 4Fe-4S dicluster domain - - - 1.14e-261 812.0
PJD3_k127_2975351_10 PKHD-type hydroxylase K07336 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001949 262.0
PJD3_k127_2975351_11 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000462 257.0
PJD3_k127_2975351_12 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000001262 240.0
PJD3_k127_2975351_13 Belongs to the DsrF TusC family K07236 GO:0002097,GO:0002098,GO:0002143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990228,GO:1990234 - 0.00000000000000000000000000000000000000000000000000000000000000003473 225.0
PJD3_k127_2975351_14 TIGRFAM CRISPR-associated protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000885 229.0
PJD3_k127_2975351_15 TIGRFAM sulfur relay protein TusD DsrE K07235 GO:0006790,GO:0008150,GO:0008152,GO:0009987,GO:0019417,GO:0044237,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000005272 220.0
PJD3_k127_2975351_16 part of a sulfur-relay system K11179 - - 0.00000000000000000000000000000000000000000000000000000007312 196.0
PJD3_k127_2975351_17 Part of a sulfur-relay system K11179 - - 0.0000000000000000000000000000000000000000000000236 172.0
PJD3_k127_2975351_18 sulfur relay protein TusB DsrH K07237 - - 0.0000000000000000000000000000000006374 133.0
PJD3_k127_2975351_19 - - - - 0.000000000000000000000000000001627 126.0
PJD3_k127_2975351_2 reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 2.77e-214 674.0
PJD3_k127_2975351_20 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000002164 117.0
PJD3_k127_2975351_21 - - - - 0.00000000001731 67.0
PJD3_k127_2975351_3 nitrite sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein K11181 - 1.8.99.5 2.522e-199 624.0
PJD3_k127_2975351_4 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005569 587.0
PJD3_k127_2975351_5 PFAM Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 509.0
PJD3_k127_2975351_6 Glycosyl transferase - GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 454.0
PJD3_k127_2975351_7 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 340.0
PJD3_k127_2975351_8 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 335.0
PJD3_k127_2975351_9 Nitrate reductase gamma subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000354 320.0
PJD3_k127_2983629_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 2.981e-238 746.0
PJD3_k127_2983629_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 3.655e-231 718.0
PJD3_k127_2983629_2 Uncharacterized protein family, UPF0114 - - - 0.000000000000000000000000000000000000000000000000000000000000007131 221.0
PJD3_k127_2983629_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000006841 198.0
PJD3_k127_2983629_4 - - - - 0.000000000005419 66.0
PJD3_k127_2983629_5 - - - - 0.0000003456 54.0
PJD3_k127_3011567_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 597.0
PJD3_k127_3011567_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 325.0
PJD3_k127_3011567_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042364,GO:0042398,GO:0042493,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046656,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 311.0
PJD3_k127_3011567_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000007201 248.0
PJD3_k127_3011567_4 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000008731 225.0
PJD3_k127_3011567_5 Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000002524 115.0
PJD3_k127_3037264_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 8.537e-319 987.0
PJD3_k127_3044896_0 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 GO:0001887,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016785,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043828,GO:0044237,GO:0044238,GO:0046483,GO:0070329,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008994 388.0
PJD3_k127_3044896_1 Synthesizes selenophosphate from selenide and ATP K01008 GO:0000287,GO:0001887,GO:0003674,GO:0003824,GO:0004756,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009451,GO:0009987,GO:0010467,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019752,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0070329,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.9.3 0.00000000000000000000000000000000000000000000000000004037 191.0
PJD3_k127_3044896_2 - - - - 0.00000000001711 66.0
PJD3_k127_309016_0 Multi-copper K08100,K14588 GO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005507,GO:0005575,GO:0005623,GO:0006950,GO:0008150,GO:0008152,GO:0009636,GO:0010035,GO:0010038,GO:0010273,GO:0016491,GO:0016679,GO:0016682,GO:0016722,GO:0016724,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0043167,GO:0043169,GO:0044464,GO:0046688,GO:0046872,GO:0046914,GO:0050896,GO:0055114,GO:0061687,GO:0097501,GO:0098754,GO:1990169 1.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 345.0
PJD3_k127_309016_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001691 240.0
PJD3_k127_309016_2 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000002734 207.0
PJD3_k127_309016_3 Multicopper oxidase K00368 - 1.7.2.1 0.00000000000000000000000000000000000000002213 176.0
PJD3_k127_309016_4 Four helix bundle sensory module for signal transduction K03406,K03776,K05874 - - 0.00000000000000000002456 95.0
PJD3_k127_3097637_0 Carbamoyl-phosphate synthetase ammonia chain K01955 GO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.0 1689.0
PJD3_k127_3097637_1 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000002106 263.0
PJD3_k127_3097637_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000005819 138.0
PJD3_k127_3111393_0 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002951 243.0
PJD3_k127_3111393_1 Domain of unknown function (DUF4402) - - - 0.00007258 52.0
PJD3_k127_311816_0 pfkB family carbohydrate kinase K00856 - 2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 484.0
PJD3_k127_311816_1 Glycine cleavage system P-protein K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 398.0
PJD3_k127_311816_2 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000002435 231.0
PJD3_k127_311816_3 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.000000000000000000000000000000000000004074 149.0
PJD3_k127_3122635_0 Flavocytochrome c sulphide dehydrogenase, flavin-binding K17229 - 1.8.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 356.0
PJD3_k127_3122635_1 Vitamin K-dependent gamma-carboxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003514 342.0
PJD3_k127_3122635_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000509 152.0
PJD3_k127_3139686_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 - 2.3.3.9 1.658e-297 925.0
PJD3_k127_3139686_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.195e-199 629.0
PJD3_k127_3139686_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 573.0
PJD3_k127_3139686_3 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003859 309.0
PJD3_k127_3139686_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000007647 234.0
PJD3_k127_3139686_5 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.0000000000000000000000000000000000007418 149.0
PJD3_k127_3139686_6 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000002156 123.0
PJD3_k127_3144112_0 PFAM Type II secretion system protein E K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 537.0
PJD3_k127_3144112_1 TIGRFAM penicillin-binding protein, 1A K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009477 481.0
PJD3_k127_3144112_2 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005442 369.0
PJD3_k127_3144408_0 Conserved region in glutamate synthase - - - 1.215e-219 691.0
PJD3_k127_3144408_1 Saccharopine dehydrogenase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007521 384.0
PJD3_k127_3144408_2 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 303.0
PJD3_k127_3144408_3 Oxidoreductase FAD-binding domain K14581 - 1.18.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 302.0
PJD3_k127_3144408_4 Group 1 truncated hemoglobin K06886 - - 0.000000000000000000000000000000000000000000000000000000000000004375 218.0
PJD3_k127_3144408_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000003903 199.0
PJD3_k127_3144408_6 organic phosphonate transport K02044 - - 0.0000000000000000000000000000000000000000000000000000009782 203.0
PJD3_k127_3144408_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000002985 183.0
PJD3_k127_3144408_8 Diguanylate cyclase - - - 0.000000000000000003995 98.0
PJD3_k127_3144408_9 - - - - 0.0000005418 56.0
PJD3_k127_3145629_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 4.298e-206 646.0
PJD3_k127_3145629_1 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009917 397.0
PJD3_k127_3145629_10 Prokaryotic N-terminal methylation motif - - - 0.000000000000005132 82.0
PJD3_k127_3145629_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004466 277.0
PJD3_k127_3145629_3 PFAM Glutathione S-transferase K03599 GO:0001000,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0008150,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0042594,GO:0043175,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070063,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009217 265.0
PJD3_k127_3145629_4 PFAM Cytochrome C1 K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001831 263.0
PJD3_k127_3145629_5 phosphatase homologous to the C-terminal domain of histone macroH2A1 - GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0008150,GO:0008428,GO:0009892,GO:0010605,GO:0016787,GO:0019213,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0032069,GO:0032074,GO:0043086,GO:0043900,GO:0044092,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060698,GO:0060699,GO:0060700,GO:0060701,GO:0060702,GO:0061463,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1900190,GO:1900231 - 0.00000000000000000000000000000000000000000000000000000000000001782 218.0
PJD3_k127_3145629_6 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000002948 191.0
PJD3_k127_3145629_7 Stringent starvation protein B K03600 - - 0.0000000000000000000000000000000000000000298 155.0
PJD3_k127_3145629_8 proteolysis - - - 0.0000000000000000000000000000004152 131.0
PJD3_k127_3145629_9 General secretion pathway protein I K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.000000000000000001024 91.0
PJD3_k127_3148498_0 associated with various cellular activities K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 473.0
PJD3_k127_3148498_1 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000087 298.0
PJD3_k127_3148498_2 Belongs to the BolA IbaG family K05527 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0022603,GO:0022604,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000004053 128.0
PJD3_k127_3148498_3 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000008752 124.0
PJD3_k127_3148498_4 Domain of unknown function (DUF4381) - - - 0.000000000000000000000001344 110.0
PJD3_k127_3148498_5 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000001117 98.0
PJD3_k127_3150809_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 8.024e-244 759.0
PJD3_k127_3150809_1 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003093 267.0
PJD3_k127_3150809_2 Belongs to the peptidase S8 family - - - 0.0000004091 61.0
PJD3_k127_3154571_0 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 568.0
PJD3_k127_3154571_1 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005226 254.0
PJD3_k127_3154571_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000008533 241.0
PJD3_k127_3154571_3 repeat protein - - - 0.00000000000000000000000000000000008668 141.0
PJD3_k127_3154571_4 - - - - 0.000000000000001809 79.0
PJD3_k127_3154571_5 translation initiation factor activity - - - 0.0000000000006844 79.0
PJD3_k127_316999_0 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000319 216.0
PJD3_k127_316999_1 homoserine kinase type II (protein kinase fold) - - - 0.00000000000000000000000000000000000000000007135 173.0
PJD3_k127_316999_2 ankyrin repeats - - - 0.00000007491 64.0
PJD3_k127_3176627_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 427.0
PJD3_k127_3176627_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002395 401.0
PJD3_k127_3176627_2 HAD-hyrolase-like K01091 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008967,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031404,GO:0033554,GO:0034641,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 347.0
PJD3_k127_3176627_3 Copper resistance protein D - - - 0.0000000000000000000000000000000000000000000000001351 180.0
PJD3_k127_3205913_0 Na Pi-Cotransporter K03324 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002251 531.0
PJD3_k127_3205913_1 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 413.0
PJD3_k127_3205913_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000001487 56.0
PJD3_k127_3233123_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 4.372e-268 845.0
PJD3_k127_3233123_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 3.841e-251 777.0
PJD3_k127_3233123_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 2.925e-223 697.0
PJD3_k127_3233123_3 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000583 226.0
PJD3_k127_3233123_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000001424 192.0
PJD3_k127_3248101_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007254 514.0
PJD3_k127_3248101_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000003976 242.0
PJD3_k127_3248101_2 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000006103 106.0
PJD3_k127_325659_0 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007999 361.0
PJD3_k127_325659_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 344.0
PJD3_k127_325659_2 Peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000001822 136.0
PJD3_k127_325659_3 Protein of unknown function (DUF3565) - - - 0.00000000000000002882 81.0
PJD3_k127_327367_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 589.0
PJD3_k127_327367_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 536.0
PJD3_k127_327367_2 belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000007702 256.0
PJD3_k127_327367_3 PFAM glucosamine galactosamine-6-phosphate isomerase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000002378 220.0
PJD3_k127_328549_0 ROK family K00845,K00847,K00884 - 2.7.1.2,2.7.1.4,2.7.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 394.0
PJD3_k127_328549_1 organic phosphonate transport K02044 - - 0.0000000000000000000000000000000000000000000000000006161 194.0
PJD3_k127_328549_2 Periplasmic binding protein K02016,K06858 - - 0.0000000000000000000000000000000000000000007473 162.0
PJD3_k127_33061_0 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000001776 241.0
PJD3_k127_33061_1 COG1192 ATPases involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000001241 194.0
PJD3_k127_33061_2 Mannose-6-phosphate isomerase - - - 0.000000000000000000000000000000000000000000004121 166.0
PJD3_k127_33061_3 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.000000000000000000000000000000000000000001688 160.0
PJD3_k127_33061_4 Chemotaxis phosphatase CheX - - - 0.00000000000000000000000000002451 123.0
PJD3_k127_33061_5 acylphosphatase K01512 - 3.6.1.7 0.000000000000000000000003431 104.0
PJD3_k127_33061_6 response regulator K03413 - - 0.00000000000000000001858 96.0
PJD3_k127_33061_7 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000002285 82.0
PJD3_k127_3321465_0 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 578.0
PJD3_k127_3321465_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 383.0
PJD3_k127_3321465_2 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000008798 151.0
PJD3_k127_3321465_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0006457,GO:0008150,GO:0009987 - 0.000000000000000000000000000000000001196 139.0
PJD3_k127_3323647_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 304.0
PJD3_k127_3323647_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000005761 251.0
PJD3_k127_3323647_2 PFAM porin Gram-negative type - - - 0.00000000000000000000000000000000000000000001153 175.0
PJD3_k127_3323647_3 NlpC/P60 family K13694,K13695 - 3.4.17.13 0.00000000000000000000000000000000000000008049 156.0
PJD3_k127_3323647_4 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004536,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008946,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0016896,GO:0019439,GO:0034611,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000003505 144.0
PJD3_k127_3331019_0 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 293.0
PJD3_k127_3331019_1 Adenylate cyclase - - - 0.00000000000000000000000000004981 121.0
PJD3_k127_3347892_0 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 408.0
PJD3_k127_3347892_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000001718 132.0
PJD3_k127_3347892_2 glyoxalase III activity K00799,K04750 - 2.5.1.18 0.00000000000000000000001307 106.0
PJD3_k127_3347892_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000006394 84.0
PJD3_k127_3347892_4 - - - - 0.00003749 51.0
PJD3_k127_3348537_0 acyl-CoA dehydrogenase K06445 - - 1.194e-226 713.0
PJD3_k127_3348537_1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 359.0
PJD3_k127_3354518_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 376.0
PJD3_k127_3354518_1 alcohol dehydrogenase K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 359.0
PJD3_k127_3354518_2 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000001724 141.0
PJD3_k127_337259_0 Histone deacetylase domain - - - 2.071e-211 667.0
PJD3_k127_3400514_0 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002763 304.0
PJD3_k127_3400514_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004937 252.0
PJD3_k127_3400514_10 Sigma-70, region 4 K03088 - - 0.000000000000001906 79.0
PJD3_k127_3400514_2 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.000000000000000000000000000000000000000000000000000000000000000000008691 243.0
PJD3_k127_3400514_3 COG1309 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000109 207.0
PJD3_k127_3400514_4 Domain of unknown function (DUF4396) - - - 0.0000000000000000000000000000000000000000000000000004794 188.0
PJD3_k127_3400514_5 helix_turn_helix, mercury resistance K19591,K19592 - - 0.0000000000000000000000000000000000000000000000002308 179.0
PJD3_k127_3400514_6 Glutathione S-transferase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000004856 185.0
PJD3_k127_3400514_7 Protein of unknown function (DUF3014) - - - 0.00000000000000000000000000000000000000000000004741 180.0
PJD3_k127_3400514_8 phosphate-selective porin O and P - - - 0.00000000000000000000000000002516 124.0
PJD3_k127_3400514_9 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000117 96.0
PJD3_k127_3411053_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008292 481.0
PJD3_k127_3411053_1 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 385.0
PJD3_k127_3411053_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000008801 244.0
PJD3_k127_3411053_3 Belongs to the DnaA family. HdA subfamily K10763 - - 0.0000000000000000000000000000000000000000000000000000000002707 210.0
PJD3_k127_3411053_4 Uncharacterized protein conserved in bacteria (DUF2066) K09938 - - 0.000000000000000000000000000000000000000000000000000000001476 215.0
PJD3_k127_3411053_5 PFAM CDP-alcohol phosphatidyltransferase K08744 - 2.7.8.41 0.00000000000000000000000000000000000000000000000000004447 193.0
PJD3_k127_3411053_6 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000001501 119.0
PJD3_k127_3411053_7 Belongs to the WrbA family K03809 - 1.6.5.2 0.000000007043 57.0
PJD3_k127_3412741_0 COG1032 Fe-S oxidoreductase - - - 0.0 1068.0
PJD3_k127_3412741_1 Belongs to the peptidase S1C family K04771,K04772 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000393 582.0
PJD3_k127_3412741_2 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.0000000000000000000000000000000000000000000000000000000006181 205.0
PJD3_k127_3412741_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000006338 141.0
PJD3_k127_3412741_4 BRO family, N-terminal domain - - - 0.0000000000000006694 80.0
PJD3_k127_3412741_5 pfam ammecr1 - - - 0.000001026 50.0
PJD3_k127_3424677_0 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000492 291.0
PJD3_k127_3424677_1 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000001421 109.0
PJD3_k127_3424677_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000004297 91.0
PJD3_k127_343144_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 2.535e-209 659.0
PJD3_k127_343144_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008425,GO:0008757,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016740,GO:0016741,GO:0030580,GO:0032259,GO:0042180,GO:0042181,GO:0043333,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 385.0
PJD3_k127_343144_2 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 305.0
PJD3_k127_343144_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 292.0
PJD3_k127_343144_4 protein conserved in bacteria K01814 - 5.3.1.16 0.000000000000000000000000000000000000000000000000000004038 193.0
PJD3_k127_343144_5 Sterol-binding domain protein K03690 - - 0.000000000000000000000000000008451 125.0
PJD3_k127_343144_6 membrane protein domain - - - 0.00000000000001665 79.0
PJD3_k127_3433199_0 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002054 457.0
PJD3_k127_3433199_1 Methyl-accepting chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002723 282.0
PJD3_k127_3433199_2 - - - - 0.000000000006631 68.0
PJD3_k127_3433199_3 - - - - 0.00000000001572 74.0
PJD3_k127_3434684_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 GO:0003674,GO:0003824,GO:0004353,GO:0004354,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0042802,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 369.0
PJD3_k127_3434684_1 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 362.0
PJD3_k127_3434684_2 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 302.0
PJD3_k127_3434684_3 Nucleotidyltransferase - - - 0.00000000000000000000000000000000000000000000000001586 192.0
PJD3_k127_3444423_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1461.0
PJD3_k127_3444423_1 COG0209 Ribonucleotide reductase, alpha subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 329.0
PJD3_k127_3444423_2 - - - - 0.000000000000000000000000009298 113.0
PJD3_k127_3447391_0 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 2.378e-278 874.0
PJD3_k127_3447391_1 membrane organization K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 632.0
PJD3_k127_3447391_2 Phosphoserine phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 297.0
PJD3_k127_3447391_3 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000001055 231.0
PJD3_k127_3447391_4 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.000000000000000000000000000000000000000000000000000000006194 204.0
PJD3_k127_3447391_5 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000002144 167.0
PJD3_k127_3473691_0 TIGRFAM Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 1.759e-202 635.0
PJD3_k127_3473691_1 pfam php K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 355.0
PJD3_k127_3473691_2 Belongs to the SUA5 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 292.0
PJD3_k127_3473691_3 Peptidase M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003313 268.0
PJD3_k127_3473691_4 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003217 247.0
PJD3_k127_3473691_5 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000009398 184.0
PJD3_k127_3473691_6 YCII-related domain K09780 - - 0.00000000000000000000000000000000000003554 146.0
PJD3_k127_3478275_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 5.295e-245 771.0
PJD3_k127_3478275_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 363.0
PJD3_k127_3478275_2 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001524 339.0
PJD3_k127_3478275_3 PFAM Fructosamine kinase - GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0044237 - 0.00000000000000000000000000000000000000000000006937 173.0
PJD3_k127_3478275_4 PFAM cytochrome c, class I K08738 - - 0.00000000000000000000000002577 111.0
PJD3_k127_3493556_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 467.0
PJD3_k127_3493556_1 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 331.0
PJD3_k127_3493556_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001655 254.0
PJD3_k127_3493556_3 SMART PDZ DHR GLGF domain protein K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000002409 242.0
PJD3_k127_3493556_4 Belongs to the CDS family K00981 GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000001592 224.0
PJD3_k127_34989_0 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007322 413.0
PJD3_k127_34989_1 PFAM Major Facilitator Superfamily K08227 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 407.0
PJD3_k127_34989_2 Phosphate acyltransferases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005798 274.0
PJD3_k127_34989_3 SMART Phospholipid glycerol acyltransferase K05939 - 2.3.1.40,6.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000126 255.0
PJD3_k127_34989_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000004377 217.0
PJD3_k127_34989_5 metal cluster binding - - - 0.000000000000003747 77.0
PJD3_k127_3504197_0 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 540.0
PJD3_k127_3504197_1 radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 455.0
PJD3_k127_3504197_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000000000005038 193.0
PJD3_k127_3504197_3 lysine methyltransferase K07117 - - 0.0000000000000000000000000002806 117.0
PJD3_k127_3504197_4 Putative zinc-finger - - - 0.0000000000001338 74.0
PJD3_k127_351149_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 328.0
PJD3_k127_351149_1 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002858 265.0
PJD3_k127_3516014_0 Membrane protein involved in aromatic hydrocarbon degradation K06076 - - 0.00000000000000000000000000000000000000000000000000000000000000002349 228.0
PJD3_k127_3516014_1 protein localization to T-tubule K10380,K15503,K21440 - - 0.0000000000000000000000000000000000000000000000000000365 208.0
PJD3_k127_3516014_2 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000005973 93.0
PJD3_k127_3518052_0 Dynamin family - - - 0.00000000000000000000000000000000000000000000000000000000000000009387 231.0
PJD3_k127_3518052_1 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.00000000000000000000000000000000000000000000001032 182.0
PJD3_k127_3518052_2 Domain of unknown function (DUF4426) - - - 0.0000000000000000000000005746 110.0
PJD3_k127_3539024_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 GO:0003674,GO:0003824,GO:0004619,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030145,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046537,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.4.2.12 5.088e-204 644.0
PJD3_k127_3539024_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 546.0
PJD3_k127_3539024_2 COG4942 Membrane-bound metallopeptidase - GO:0000920,GO:0001896,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008219,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0012501,GO:0016020,GO:0016787,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0042221,GO:0042493,GO:0042546,GO:0042597,GO:0043085,GO:0044085,GO:0044093,GO:0044464,GO:0050790,GO:0050896,GO:0051301,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071554,GO:0071840,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000001579 254.0
PJD3_k127_3539024_3 TIGRFAM DJ-1 family protein K03152 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000002353 195.0
PJD3_k127_3545409_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 582.0
PJD3_k127_3545409_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 563.0
PJD3_k127_3545409_2 COG2148 Sugar transferases involved in lipopolysaccharide synthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 433.0
PJD3_k127_3545409_3 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000008301 209.0
PJD3_k127_356309_0 ABC-type uncharacterized transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006776 348.0
PJD3_k127_356309_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 335.0
PJD3_k127_356309_2 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000001768 104.0
PJD3_k127_356309_3 - - - - 0.000000000000000000001434 105.0
PJD3_k127_356309_4 Aluminium induced protein K01953 - 6.3.5.4 0.000000000000001083 82.0
PJD3_k127_356309_5 ABC-2 family transporter protein K01992 - - 0.000000000003088 69.0
PJD3_k127_3594012_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0055114,GO:0071704,GO:0072350 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000953 293.0
PJD3_k127_3594012_1 Ankyrin repeat - - - 0.00000000000000000000000000000000000004088 158.0
PJD3_k127_3601077_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 GO:0000270,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006040,GO:0006047,GO:0006048,GO:0006139,GO:0006629,GO:0006725,GO:0006793,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009225,GO:0009226,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019134,GO:0019438,GO:0030203,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042546,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0046872,GO:0055086,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112 541.0
PJD3_k127_3601077_1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 493.0
PJD3_k127_3601077_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000008498 174.0
PJD3_k127_362649_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1092.0
PJD3_k127_362649_1 DAHP synthetase I family K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005526 580.0
PJD3_k127_362649_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009725 284.0
PJD3_k127_362649_3 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000042 136.0
PJD3_k127_362649_4 - - - - 0.00000000000009832 73.0
PJD3_k127_362649_5 Protein of unknown function (DUF2892) - - - 0.00001521 52.0
PJD3_k127_3627402_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 424.0
PJD3_k127_3627402_1 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 323.0
PJD3_k127_3627402_11 - - - - 0.0000000000001012 80.0
PJD3_k127_3627402_12 - - - - 0.000005166 48.0
PJD3_k127_3627402_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001805 288.0
PJD3_k127_3627402_3 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006128 256.0
PJD3_k127_3627402_4 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000001431 224.0
PJD3_k127_3627402_5 Type IX secretion system membrane protein PorP/SprF - - - 0.00000000000000000000000000000000000000000001819 178.0
PJD3_k127_3627402_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000002011 151.0
PJD3_k127_3627402_7 - - - - 0.00000000000000000000000000000000005084 136.0
PJD3_k127_3627402_8 cheY-homologous receiver domain - - - 0.00000000000000000000001013 105.0
PJD3_k127_3627402_9 Unextendable partial coding region - - - 0.000000000000000002612 86.0
PJD3_k127_3632855_0 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074 432.0
PJD3_k127_3632855_1 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K11890,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000001463 244.0
PJD3_k127_3632855_2 peptidase K07260 - 3.4.17.14 0.000000000000000000000000000003179 125.0
PJD3_k127_3633109_0 Adenylate cyclase K05851 GO:0003674,GO:0003824,GO:0004016,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009975,GO:0009987,GO:0016829,GO:0016849,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046058,GO:0046390,GO:0046483,GO:0052652,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.6.1.1 2.475e-212 692.0
PJD3_k127_3633109_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008836,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 479.0
PJD3_k127_3633109_2 Protein of unknown function (DUF3179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 357.0
PJD3_k127_3633109_3 phospholipase Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000009491 231.0
PJD3_k127_3633109_4 Protein of unknown function (DUF3047) - - - 0.000000000000000000000000000000000000000000000000000000003168 206.0
PJD3_k127_3633109_5 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.0000000000000000000000000009582 115.0
PJD3_k127_3633109_6 Uncharacterized ACR, COG1678 - - - 0.000000000000000000000000009932 118.0
PJD3_k127_3633109_7 diguanylate cyclase - - - 0.0000000000000000014 96.0
PJD3_k127_3645296_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding K01652 - 2.2.1.6 6.17e-287 889.0
PJD3_k127_3645296_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009695 575.0
PJD3_k127_3645296_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 327.0
PJD3_k127_3645296_3 Acetolactate synthase K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000002589 227.0
PJD3_k127_3645296_4 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000002665 145.0
PJD3_k127_3645296_5 Macrophage migration inhibitory factor (MIF) - - - 0.00000000000000000000000000000006176 130.0
PJD3_k127_3645296_6 Protein of unknown function (DUF3579) - - - 0.000000000000000000000002463 108.0
PJD3_k127_3652647_0 type IV pilus secretin PilQ K02666 - - 8.312e-215 697.0
PJD3_k127_3652647_1 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 473.0
PJD3_k127_3652647_2 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000003113 237.0
PJD3_k127_3652647_3 Pilus assembly protein, PilO K02664 - - 0.0000000000000000000000000000000000000000000000000000000000000000001847 236.0
PJD3_k127_3652647_4 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000000000000000000000001289 196.0
PJD3_k127_3652647_5 pilus assembly protein PilP K02665 - - 0.0000000000000000000000000000000000000001709 156.0
PJD3_k127_3663499_0 Uncharacterized conserved protein (DUF2075) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009221 277.0
PJD3_k127_3663499_1 xylanase chitin deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000009417 216.0
PJD3_k127_3685291_0 Protein of unknown function (DUF3570) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002902 377.0
PJD3_k127_3685291_1 ApbE family K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000003289 206.0
PJD3_k127_3685291_2 response regulator K07666 - - 0.0000000000000000000000000006029 115.0
PJD3_k127_3701057_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 1.355e-233 739.0
PJD3_k127_3701057_1 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401,K03229,K22510 - - 0.000000000000000000000000000000000000000000000006231 175.0
PJD3_k127_370715_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1223.0
PJD3_k127_370715_1 Calcineurin-like phosphoesterase K14379 - 3.1.3.2 0.000000000000000000000000000000000000000000000000000000001197 213.0
PJD3_k127_370715_2 Evidence 4 Homologs of previously reported genes of K09700 - - 0.00000000000000000000000000000000000000000000000000002961 189.0
PJD3_k127_370715_5 - - - - 0.000000001412 61.0
PJD3_k127_3712451_0 PFAM Uncharacterised conserved protein UCP016719 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 388.0
PJD3_k127_3712451_1 PFAM Type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 385.0
PJD3_k127_3712451_2 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000009652 206.0
PJD3_k127_3712451_3 (FHA) domain - - - 0.00000000000000000000000000000009443 133.0
PJD3_k127_3712451_4 - - - - 0.0000000000000000000000000005067 120.0
PJD3_k127_3717030_0 RNA polymerase recycling family C-terminal K03580 - - 4.231e-209 670.0
PJD3_k127_3717030_1 PFAM Forkhead-associated protein - - - 0.00000000001913 69.0
PJD3_k127_3736457_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006301 456.0
PJD3_k127_3736457_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005913 342.0
PJD3_k127_3736457_10 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000000005321 190.0
PJD3_k127_3736457_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0015935,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031329,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043487,GO:0043488,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904 - 0.0000000000000000000000000000000000000000000000000002323 187.0
PJD3_k127_3736457_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000001359 172.0
PJD3_k127_3736457_13 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000001013 163.0
PJD3_k127_3736457_14 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000002228 156.0
PJD3_k127_3736457_15 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000003847 139.0
PJD3_k127_3736457_16 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000004661 132.0
PJD3_k127_3736457_17 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000002258 126.0
PJD3_k127_3736457_18 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000008831 106.0
PJD3_k127_3736457_19 Ribosomal protein L30 K02907 - - 0.0000000000000000000009118 95.0
PJD3_k127_3736457_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 308.0
PJD3_k127_3736457_20 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000001464 89.0
PJD3_k127_3736457_21 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000007479 79.0
PJD3_k127_3736457_22 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000000000000006484 77.0
PJD3_k127_3736457_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003986 299.0
PJD3_k127_3736457_4 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005033 271.0
PJD3_k127_3736457_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009731 260.0
PJD3_k127_3736457_6 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001134 250.0
PJD3_k127_3736457_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009302 237.0
PJD3_k127_3736457_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000383 224.0
PJD3_k127_3736457_9 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000004084 199.0
PJD3_k127_3743687_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 341.0
PJD3_k127_3743687_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 310.0
PJD3_k127_3743687_2 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000000000003666 221.0
PJD3_k127_3743687_3 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000000001099 187.0
PJD3_k127_3743687_4 Ribosomal protein L36 K02919 - - 0.00000000000002838 72.0
PJD3_k127_3753113_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 540.0
PJD3_k127_3753113_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000001516 70.0
PJD3_k127_382265_0 Zn-dependent protease with chaperone function - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 320.0
PJD3_k127_382378_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 1.403e-245 764.0
PJD3_k127_382378_1 Hydrolase of alkaline phosphatase superfamily K07014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 451.0
PJD3_k127_382378_2 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000001751 190.0
PJD3_k127_382378_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000007368 165.0
PJD3_k127_383009_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008097 284.0
PJD3_k127_383009_1 4Fe-4S dicluster domain K00184 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000002173 158.0
PJD3_k127_383058_0 Protein of unknown function (DUF1631) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007926 318.0
PJD3_k127_383058_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000001032 244.0
PJD3_k127_383058_2 Histidine Phosphotransfer domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001583 236.0
PJD3_k127_384879_0 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006125 393.0
PJD3_k127_384879_1 ABC transporter permease K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 388.0
PJD3_k127_384879_2 PFAM Mammalian cell entry related domain protein K02067 - - 0.0000000000000000000000000000000000000000000000000000002217 199.0
PJD3_k127_384879_3 Outer membrane efflux protein - - - 0.00000000000000000005184 94.0
PJD3_k127_384879_4 3-beta hydroxysteroid dehydrogenase/isomerase family - - - 0.0000000000000000418 85.0
PJD3_k127_384879_5 Protein of unknown function DUF72 - - - 0.00000000000009899 80.0
PJD3_k127_385221_0 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 479.0
PJD3_k127_385221_1 - - - - 0.0000000000588 68.0
PJD3_k127_3855755_0 PFAM sulfotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002979 302.0
PJD3_k127_3855755_1 PFAM peptidase S8 and S53 subtilisin kexin sedolisin K08651 - 3.4.21.66 0.00000000000000000000000000000000000000000000000000000000000000002175 245.0
PJD3_k127_3855755_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000004422 216.0
PJD3_k127_3874715_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 483.0
PJD3_k127_3874715_1 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 471.0
PJD3_k127_3874715_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007083 317.0
PJD3_k127_3889646_0 PFAM Sulfotransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007512 344.0
PJD3_k127_3889646_1 kinase activity K07154 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 341.0
PJD3_k127_3889646_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006333 268.0
PJD3_k127_3889646_3 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000162 190.0
PJD3_k127_3889646_5 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.0000002968 53.0
PJD3_k127_3889646_6 sequence-specific DNA binding - - - 0.000001007 54.0
PJD3_k127_3889646_7 diguanylate cyclase - - - 0.00008779 49.0
PJD3_k127_3923657_0 FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026 480.0
PJD3_k127_3923657_1 FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02417 - - 0.000000000000000000000000000000000000000000000001688 177.0
PJD3_k127_3923657_2 Flagellar basal body-associated protein FliL - - - 0.0000000000000000000000002827 113.0
PJD3_k127_3940418_0 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 479.0
PJD3_k127_3940418_1 Tryptophan-rich sensory protein K05770 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003986 241.0
PJD3_k127_3940418_2 PFAM GGDEF domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000008227 209.0
PJD3_k127_3940418_3 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000000000000000002371 197.0
PJD3_k127_3940418_4 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000003624 163.0
PJD3_k127_3940418_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0001056 46.0
PJD3_k127_3940775_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 391.0
PJD3_k127_3940775_1 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 291.0
PJD3_k127_3940775_2 His Kinase A (phospho-acceptor) domain K02484,K07645 - 2.7.13.3 0.00000000000004773 76.0
PJD3_k127_3955697_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 612.0
PJD3_k127_3955697_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0000018,GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008301,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030554,GO:0030983,GO:0031323,GO:0032136,GO:0032300,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043531,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007143 470.0
PJD3_k127_3955697_2 double-strand break repair protein AddB K16899 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 353.0
PJD3_k127_3955697_3 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000001215 189.0
PJD3_k127_3959138_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 3.48e-237 769.0
PJD3_k127_3959138_1 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 7.91e-208 662.0
PJD3_k127_3959138_10 subfamily IA, variant 1 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000006668 214.0
PJD3_k127_3959138_11 low molecular weight K01104 - 3.1.3.48 0.0000000000000000000000000000000000000000000000000000000000634 209.0
PJD3_k127_3959138_12 Biopolymer transport protein K03559 - - 0.00000000000000000000000000000000000006047 146.0
PJD3_k127_3959138_13 Belongs to the UPF0434 family K09791 - - 0.00000000000000000000005606 98.0
PJD3_k127_3959138_14 Nuclear protein SET K07117 - - 0.0002298 44.0
PJD3_k127_3959138_2 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 466.0
PJD3_k127_3959138_3 PFAM Aminotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 436.0
PJD3_k127_3959138_4 PFAM Lytic K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 408.0
PJD3_k127_3959138_5 signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 388.0
PJD3_k127_3959138_6 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 366.0
PJD3_k127_3959138_7 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008005 309.0
PJD3_k127_3959138_8 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002659 279.0
PJD3_k127_3959138_9 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000003698 267.0
PJD3_k127_3965038_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0009058,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042221,GO:0042398,GO:0043043,GO:0043167,GO:0043169,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044444,GO:0044464,GO:0046685,GO:0046689,GO:0046872,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0070887,GO:0071241,GO:0071243,GO:0071248,GO:0071288,GO:0071704,GO:1901564,GO:1901566,GO:1901576 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007323 563.0
PJD3_k127_3965038_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016853,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003864 460.0
PJD3_k127_3965038_2 D-isomer specific 2-hydroxyacid dehydrogenase K00018 - 1.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 347.0
PJD3_k127_3965038_3 MltA-interacting protein MipA - - - 0.0000000000000000000000000000000000000000000000000000000000000001036 233.0
PJD3_k127_3965038_4 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000001458 206.0
PJD3_k127_3965038_5 - - - - 0.000000000000000000000000007939 115.0
PJD3_k127_3965038_6 cell redox homeostasis K03671 - - 0.00000000000000000000000007722 113.0
PJD3_k127_3965038_7 - - - - 0.00002308 50.0
PJD3_k127_3972841_0 PFAM Phosphoglycerate mutase K02226 - 3.1.3.73 0.0000000000000000000000000000000000000000000000000000000000007836 216.0
PJD3_k127_3972841_1 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 6.3.1.10 0.00000000000000000000000000000006231 136.0
PJD3_k127_3972841_2 PFAM N-acetylmuramoyl-L-alanine amidase K03806 - 3.5.1.28 0.00000000000000001235 82.0
PJD3_k127_3978185_0 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 444.0
PJD3_k127_3978185_1 Protein of unknown function (DUF815) K06923 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 329.0
PJD3_k127_3978185_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000006778 265.0
PJD3_k127_3978185_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.00000000000000000000000000000000000000000000000000000006704 199.0
PJD3_k127_3978185_4 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000004701 163.0
PJD3_k127_3978185_5 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000000000116 152.0
PJD3_k127_3978185_6 AntiSigma factor - - - 0.000000000000000000000001019 112.0
PJD3_k127_3983522_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1346.0
PJD3_k127_3983522_1 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003627 610.0
PJD3_k127_3983522_10 HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000003799 207.0
PJD3_k127_3983522_11 Domain of unknown function (DUF4340) - - - 0.00000000000000000000000000000000000000000000000002241 194.0
PJD3_k127_3983522_12 Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization K03610 - - 0.0000000000000000000000000000000000000000000000009129 184.0
PJD3_k127_3983522_13 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000004387 149.0
PJD3_k127_3983522_14 Protein of unknown function (DUF523) - - - 0.000000000000000000000000000006723 125.0
PJD3_k127_3983522_15 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.00000000000000000000002872 102.0
PJD3_k127_3983522_2 Gliding motility protein GldG - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 596.0
PJD3_k127_3983522_3 Belongs to the ParA family K03609 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0007059,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051301,GO:0051302,GO:0051782,GO:0060187,GO:0065007,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002666 420.0
PJD3_k127_3983522_4 ABC transporter, ATP-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003323 406.0
PJD3_k127_3983522_5 CcmB protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005958 383.0
PJD3_k127_3983522_6 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 327.0
PJD3_k127_3983522_7 Belongs to the UPF0173 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000097 292.0
PJD3_k127_3983522_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004135 274.0
PJD3_k127_3983522_9 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000002377 230.0
PJD3_k127_398706_0 Membrane-associated sensor, integral membrane domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002357 265.0
PJD3_k127_3995003_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 573.0
PJD3_k127_3995003_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004073,GO:0006082,GO:0006520,GO:0006549,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009097,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009675 557.0
PJD3_k127_3995003_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000001103 196.0
PJD3_k127_3995003_3 Tfp pilus assembly protein K08086 - - 0.0000000000000000000000000000002895 128.0
PJD3_k127_4000468_0 TIGRFAM ribonuclease, Rne Rng family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 368.0
PJD3_k127_4000468_1 TIGRFAM TIGR02099 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002684 276.0
PJD3_k127_4011626_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005051 455.0
PJD3_k127_4011626_1 PFAM AMP-dependent synthetase and ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 441.0
PJD3_k127_4011626_2 Belongs to the protein N5-glutamine methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 308.0
PJD3_k127_4043323_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005544 454.0
PJD3_k127_4043323_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000514 441.0
PJD3_k127_4043323_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 365.0
PJD3_k127_4043323_3 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 314.0
PJD3_k127_4043323_4 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 307.0
PJD3_k127_4043323_5 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003157 282.0
PJD3_k127_4043323_6 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004141,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016882,GO:0017076,GO:0017144,GO:0018130,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000004253 221.0
PJD3_k127_4043323_7 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.0000000000000000000000000000000000000000000000000000002723 203.0
PJD3_k127_4043323_8 Belongs to the peptidase M16 family K07263 - - 0.000000000000000009307 87.0
PJD3_k127_409920_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 3.346e-216 680.0
PJD3_k127_409920_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 2.136e-214 670.0
PJD3_k127_409920_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042866,GO:0043436,GO:0043891,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576 1.2.1.12 2.898e-196 614.0
PJD3_k127_409920_3 COG0191 Fructose tagatose bisphosphate aldolase K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 605.0
PJD3_k127_409920_4 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000001056 260.0
PJD3_k127_409920_5 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000001555 246.0
PJD3_k127_409920_6 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 GO:0000302,GO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006098,GO:0006139,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009635,GO:0009636,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016740,GO:0016744,GO:0019219,GO:0019222,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0019842,GO:0030145,GO:0030976,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035690,GO:0036094,GO:0036245,GO:0042221,GO:0042493,GO:0042542,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0046496,GO:0046677,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051156,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051716,GO:0055086,GO:0060255,GO:0065007,GO:0070301,GO:0070887,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0072524,GO:0072747,GO:0072756,GO:0080090,GO:0097159,GO:0097237,GO:1901135,GO:1901322,GO:1901360,GO:1901363,GO:1901562,GO:1901564,GO:1901654,GO:1901655,GO:1901681,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000003768 224.0
PJD3_k127_4107162_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.06e-276 855.0
PJD3_k127_4107162_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 432.0
PJD3_k127_4107162_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007011 353.0
PJD3_k127_4107162_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000000000000000000007794 180.0
PJD3_k127_4107162_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000001124 176.0
PJD3_k127_4107162_5 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000000000002482 168.0
PJD3_k127_4118688_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 9.808e-219 687.0
PJD3_k127_4120049_0 Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP) K06957 - 2.3.1.193 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 452.0
PJD3_k127_4120049_1 Belongs to the MIP aquaporin (TC 1.A.8) family K02440 - - 0.000000000000000000000000000001635 123.0
PJD3_k127_4120049_2 cold-shock protein K03704 - - 0.00000000000000000000000000003715 119.0
PJD3_k127_4120049_3 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). - - - 0.000000000000000000000000004708 124.0
PJD3_k127_4120049_4 GIY-YIG catalytic domain K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.0000000000000000000005942 98.0
PJD3_k127_4138140_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 535.0
PJD3_k127_4138140_1 FHA Domain - - - 0.00000000000000007812 84.0
PJD3_k127_4138140_2 Protein of unknown function (DUF503) K09764 - - 0.00000000000009192 74.0
PJD3_k127_4153068_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 8.871e-209 657.0
PJD3_k127_4153068_1 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001416 459.0
PJD3_k127_4153068_2 Ammonium Transporter Family K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 454.0
PJD3_k127_4153068_3 CBS domain protein K06189 - - 0.0000000000000000000000000000000000000000000000000000000002289 207.0
PJD3_k127_4153068_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 GO:0000469,GO:0000478,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016151,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043244,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000003524 165.0
PJD3_k127_4153836_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003452 287.0
PJD3_k127_4153836_1 ApbE family K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000009414 187.0
PJD3_k127_4158549_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 7.379e-297 920.0
PJD3_k127_4158549_1 VWA-like domain (DUF2201) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 517.0
PJD3_k127_4158549_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 327.0
PJD3_k127_4158549_3 Haloacid dehalogenase-like hydrolase K20881 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002123 290.0
PJD3_k127_4158549_4 Protein of unknown function (DUF502) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007123 265.0
PJD3_k127_4158549_5 metal cluster binding K06940 - - 0.00000000000000000000000000000000000000000000000000000005695 201.0
PJD3_k127_4158549_6 associated with various cellular activities - - - 0.000000000000000000000000000000001918 130.0
PJD3_k127_4158549_7 FmdB family transcriptional regulator - - - 0.000000000000000000000000000000007608 130.0
PJD3_k127_416970_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1022.0
PJD3_k127_416970_1 COG0436 Aspartate tyrosine aromatic aminotransferase K00812,K12252 - 2.6.1.1,2.6.1.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008158 482.0
PJD3_k127_416970_2 - - - - 0.0000000009644 66.0
PJD3_k127_4173244_0 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003884 244.0
PJD3_k127_4173244_1 PFAM Adenylate cyclase K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000006253 213.0
PJD3_k127_4173244_2 Ferric reductase like transmembrane component - - - 0.00000000000000000000000000001707 119.0
PJD3_k127_4188640_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 342.0
PJD3_k127_4188640_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006826 327.0
PJD3_k127_4210819_0 Metallo-beta-lactamase superfamily K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002767 411.0
PJD3_k127_4210819_1 Type II/IV secretion system protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 377.0
PJD3_k127_4210819_2 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 361.0
PJD3_k127_4210819_3 COG2897 Rhodanese-related sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002459 284.0
PJD3_k127_4210819_4 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.0000000000000000000000000000000000000000000000000000000000009571 215.0
PJD3_k127_4210819_5 Oxidoreductase FAD-binding domain protein - - - 0.00000000000000000000000000000000005322 145.0
PJD3_k127_423965_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 385.0
PJD3_k127_423965_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006066 259.0
PJD3_k127_423965_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000003373 224.0
PJD3_k127_423965_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000003922 193.0
PJD3_k127_423965_4 PFAM Amino acid-binding ACT K03567 - - 0.00000000000000000000000000000000000000000000003727 175.0
PJD3_k127_423965_5 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.000000000000000002814 85.0
PJD3_k127_4246558_0 Protein of unknown function (DUF2817) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 387.0
PJD3_k127_4246558_1 acetyltransferase K03789 - 2.3.1.128 0.00000000001731 67.0
PJD3_k127_4246558_2 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000007531 53.0
PJD3_k127_426630_0 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000231 262.0
PJD3_k127_426630_1 BTB And C-terminal Kelch K10448 GO:0000003,GO:0000151,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0006919,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0009653,GO:0009893,GO:0009987,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0016567,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031461,GO:0031463,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043280,GO:0043281,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045862,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1902494,GO:1990234,GO:2000116,GO:2001056 - 0.000001156 61.0
PJD3_k127_426630_2 Regulator of ribonuclease activity B - - - 0.0008789 47.0
PJD3_k127_4290648_0 alanine symporter K03310 - - 1.899e-202 638.0
PJD3_k127_4290648_1 NUDIX hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004066 254.0
PJD3_k127_4290648_2 Phosphorylase superfamily K01241 - 3.2.2.4 0.000000000000001536 76.0
PJD3_k127_4290648_3 Domain of unknown function DUF302 - - - 0.0009222 42.0
PJD3_k127_4322536_0 Transcriptional regulator K04761 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000888 331.0
PJD3_k127_4322536_1 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000003853 188.0
PJD3_k127_4322536_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.000000000000000000000000000000000000000000000003612 175.0
PJD3_k127_4340437_0 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 380.0
PJD3_k127_4340437_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 296.0
PJD3_k127_4340437_2 Peptidyl-tRNA hydrolase PTH2 K04794 - 3.1.1.29 0.00001502 48.0
PJD3_k127_4342813_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 517.0
PJD3_k127_4342813_1 Domain of unknown function (DUF4116) - - - 0.0000179 53.0
PJD3_k127_4347341_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 GO:0000302,GO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006098,GO:0006139,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009635,GO:0009636,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016740,GO:0016744,GO:0019219,GO:0019222,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0019842,GO:0030145,GO:0030976,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0035690,GO:0036094,GO:0036245,GO:0042221,GO:0042493,GO:0042542,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0046496,GO:0046677,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051156,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051716,GO:0055086,GO:0060255,GO:0065007,GO:0070301,GO:0070887,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0072524,GO:0072747,GO:0072756,GO:0080090,GO:0097159,GO:0097237,GO:1901135,GO:1901322,GO:1901360,GO:1901363,GO:1901562,GO:1901564,GO:1901654,GO:1901655,GO:1901681,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.2.1.1 1.981e-310 955.0
PJD3_k127_4347341_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 516.0
PJD3_k127_4347341_2 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 314.0
PJD3_k127_4347341_3 Phospholipase K01058 - 3.1.1.32,3.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007915 304.0
PJD3_k127_4347341_4 - - - - 0.00000000000000000000000000000000000000000000000000000002405 197.0
PJD3_k127_4347341_5 nuclease K01174 - 3.1.31.1 0.00000000000000000000000000000000000000000007324 162.0
PJD3_k127_4347341_6 - - - - 0.0000000000000000005916 98.0
PJD3_k127_4350666_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008986,GO:0009058,GO:0009987,GO:0016051,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016781,GO:0019318,GO:0019319,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:1901576 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 297.0
PJD3_k127_4350666_1 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030234,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0065007,GO:0065009,GO:0098772 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000001386 250.0
PJD3_k127_4350666_2 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000006603 140.0
PJD3_k127_4355250_0 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 428.0
PJD3_k127_4355250_1 PFAM Di-haem cytochrome c - - - 0.00000000000000000000000000000000000000000000000000009608 191.0
PJD3_k127_4355250_2 Aldehyde dehydrogenase family K00128,K00135 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.79 0.000000000000000000000000004491 111.0
PJD3_k127_4355250_3 COG1335 Amidases related to nicotinamidase - - - 0.0001211 45.0
PJD3_k127_436035_0 Serine dehydratase beta chain K01752 - 4.3.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 593.0
PJD3_k127_436035_1 PFAM Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 574.0
PJD3_k127_436035_2 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003347 420.0
PJD3_k127_436035_3 - K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000001968 224.0
PJD3_k127_436035_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000002782 161.0
PJD3_k127_436035_5 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000000000000000000000000006105 142.0
PJD3_k127_436035_6 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.00000000000000000000000000001822 119.0
PJD3_k127_438839_0 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 329.0
PJD3_k127_438839_1 Tetratricopeptide repeat K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009825 286.0
PJD3_k127_438839_2 ECF sigma factor - - - 0.000000000000000000000000000000000000000000000000000000000000008037 221.0
PJD3_k127_438839_3 - - - - 0.0000000000000000000003101 98.0
PJD3_k127_4423525_0 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 482.0
PJD3_k127_4423525_1 TIGRFAM penicillin-binding protein, 1A K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 410.0
PJD3_k127_4423525_2 PFAM Fimbrial assembly K02663 - - 0.000000000000000000000000000000000000000007241 161.0
PJD3_k127_4442142_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 611.0
PJD3_k127_4442142_1 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 569.0
PJD3_k127_4442142_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 552.0
PJD3_k127_4442142_3 PFAM Prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 445.0
PJD3_k127_4469626_0 due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm K01869 - 6.1.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438 544.0
PJD3_k127_4469626_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007477 425.0
PJD3_k127_4469626_2 Mg2 and Co2 transporter CorC K06189 GO:0001897,GO:0001906,GO:0001907,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009405,GO:0009987,GO:0016020,GO:0019835,GO:0019836,GO:0031640,GO:0035821,GO:0044003,GO:0044004,GO:0044179,GO:0044364,GO:0044403,GO:0044419,GO:0044464,GO:0044764,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0071944 - 0.00000001553 57.0
PJD3_k127_4470687_0 phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 325.0
PJD3_k127_4470687_1 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000003171 76.0
PJD3_k127_4473388_0 PFAM von Willebrand factor type A - - - 0.0 1255.0
PJD3_k127_4473388_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 3.431e-315 965.0
PJD3_k127_4473388_2 PFAM AAA domain (dynein-related subfamily) K04748 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 487.0
PJD3_k127_4473388_3 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000176 252.0
PJD3_k127_4473388_4 PFAM Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.000000000000000000000000000000000000000000000000000000000005775 209.0
PJD3_k127_4473388_5 - - - - 0.000000000000000000000000000000000000000000006771 164.0
PJD3_k127_4473388_6 phosphohistidine phosphatase, SixA - - - 0.0000000000000000000000000000000000000003291 154.0
PJD3_k127_4473388_7 - - - - 0.000000000000000000000000005956 115.0
PJD3_k127_4499123_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003364 603.0
PJD3_k127_4499123_1 Permease K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 302.0
PJD3_k127_4499123_2 Permease YjgP YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000005869 238.0
PJD3_k127_4499123_3 5'-nucleotidase, C-terminal domain K17224 - - 0.0000000000000000000000000000000000000000000002295 170.0
PJD3_k127_4502266_0 - - - - 0.000000000000000000000000000000000000000000000000002403 186.0
PJD3_k127_4502266_1 - - - - 0.00000000000000000321 90.0
PJD3_k127_450829_0 DNA segregation ATPase FtsK SpoIIIE K03466 - - 1.704e-282 887.0
PJD3_k127_450829_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 590.0
PJD3_k127_450829_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006372 486.0
PJD3_k127_450829_3 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.000000000000000000000000000000000000000000005516 171.0
PJD3_k127_450829_4 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.0000000000000000000000000000000000000000446 154.0
PJD3_k127_450829_5 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000004894 75.0
PJD3_k127_4515029_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 302.0
PJD3_k127_4515029_1 ABC transporter, ATP-binding protein K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001371 283.0
PJD3_k127_4515029_2 salt-induced outer membrane protein K07283 - - 0.000000000000000000000000000000000000000000000000000008601 198.0
PJD3_k127_4515029_3 - - - - 0.00000000000000000000000000000000000000000001249 172.0
PJD3_k127_4515029_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000002599 75.0
PJD3_k127_4515029_5 Protein conserved in bacteria - - - 0.0000004748 56.0
PJD3_k127_4515029_6 TRAP transporter T-component - - - 0.00007058 50.0
PJD3_k127_4528919_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008234 499.0
PJD3_k127_4528919_1 PFAM OmpA MotB domain protein K02557 - - 0.000000000000000000000000000000000003313 150.0
PJD3_k127_4528919_2 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00001513 55.0
PJD3_k127_4548757_0 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009495 461.0
PJD3_k127_4548757_1 MltA-interacting MipA family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 442.0
PJD3_k127_4548757_2 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 331.0
PJD3_k127_4548757_3 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 308.0
PJD3_k127_4548757_4 Vitamin K-dependent gamma-carboxylase - - - 0.00000000000000000000000000000000004034 150.0
PJD3_k127_4548757_5 Helix-turn-helix domain K07483 - - 0.00000000000001423 75.0
PJD3_k127_4571061_0 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 595.0
PJD3_k127_4571061_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 299.0
PJD3_k127_4571061_2 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.000000000000000000000000000000000000000000000000000000000000000000000000000001809 271.0
PJD3_k127_4571061_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.00000000000000000000000000000000000003707 145.0
PJD3_k127_4571061_4 competence protein ComEA K02237 - - 0.0000000000001888 71.0
PJD3_k127_458464_0 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 451.0
PJD3_k127_458464_1 Belongs to the pseudouridine synthase RsuA family K06178 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005681 297.0
PJD3_k127_458464_2 Histidine kinase K02030,K07679 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000003479 248.0
PJD3_k127_4606302_0 ABC-type transport system, involved in lipoprotein release, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 569.0
PJD3_k127_4606302_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0008932,GO:0008933,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0030203,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0042597,GO:0043170,GO:0044425,GO:0044459,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 342.0
PJD3_k127_4606302_2 TIGRFAM hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 339.0
PJD3_k127_4606302_3 lipoprotein transporter activity K02003 GO:0008150,GO:0009405,GO:0009605,GO:0009607,GO:0043207,GO:0044403,GO:0044419,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0075136 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002233 279.0
PJD3_k127_4606302_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003839 251.0
PJD3_k127_4606302_5 Nucleotide-binding protein implicated in inhibition of septum formation K06287 GO:0003674,GO:0003824,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0047429 - 0.0000000000000000000000000000000000000000000000000000000000000000000000006067 250.0
PJD3_k127_4606302_6 DNA polymerase III, delta subunit, C terminal K02341 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000001127 226.0
PJD3_k127_4606302_7 PilZ domain K02676 - - 0.0000000000000000000000000000000000000000000000000002382 186.0
PJD3_k127_4606488_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1525.0
PJD3_k127_4606488_1 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006665 500.0
PJD3_k127_4606488_2 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007989 434.0
PJD3_k127_4606488_3 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005706 345.0
PJD3_k127_4606488_4 organic phosphonate transport K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000007571 237.0
PJD3_k127_4606488_5 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000000000000000001636 188.0
PJD3_k127_4606488_6 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000002238 190.0
PJD3_k127_4606488_8 Peptidase S24-like - - - 0.0000000000000000001942 92.0
PJD3_k127_4606488_9 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins K03528 GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022402,GO:0022607,GO:0031224,GO:0031226,GO:0032153,GO:0032506,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0090529,GO:1902410,GO:1903047 - 0.00000004686 63.0
PJD3_k127_461321_0 associated with various cellular activities - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 408.0
PJD3_k127_461321_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000009154 132.0
PJD3_k127_461321_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000001155 57.0
PJD3_k127_4621691_0 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 523.0
PJD3_k127_4621691_1 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 376.0
PJD3_k127_4621691_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000488 305.0
PJD3_k127_4621691_3 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000001577 217.0
PJD3_k127_462522_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 510.0
PJD3_k127_462522_1 Thioredoxin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 331.0
PJD3_k127_462522_2 2OG-Fe(II) oxygenase - - - 0.000000000000000000000000000000000000000000000000000000000001101 216.0
PJD3_k127_462758_0 PFAM Cytochrome bd ubiquinol oxidase, subunit I K00425 - 1.10.3.14 1.417e-256 799.0
PJD3_k127_462758_1 oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008262 526.0
PJD3_k127_462758_2 Transposase K07491 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 330.0
PJD3_k127_462758_3 membrane K00424 - 1.10.3.14 0.000000003358 58.0
PJD3_k127_4660274_0 RimK-like ATP-grasp domain K05844 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 300.0
PJD3_k127_4660274_1 - - - - 0.000000004777 57.0
PJD3_k127_4660274_2 Putative general bacterial porin - - - 0.000002833 58.0
PJD3_k127_4662890_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000815 599.0
PJD3_k127_4662890_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930,K22478 GO:0003674,GO:0003824,GO:0003991,GO:0004042,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016597,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0033554,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.1,2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 457.0
PJD3_k127_4662890_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 353.0
PJD3_k127_4662890_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 GO:0003674,GO:0003824,GO:0004588,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006466 286.0
PJD3_k127_4662890_4 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.0000000000000000000000004554 109.0
PJD3_k127_4663991_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 3.647e-228 711.0
PJD3_k127_4663991_1 Diguanylate cyclase K02488 - 2.7.7.65 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 326.0
PJD3_k127_4663991_2 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000004711 265.0
PJD3_k127_4663991_3 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000001848 236.0
PJD3_k127_4663991_4 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000000004038 201.0
PJD3_k127_4663991_5 photosynthesis - - - 0.00000000000000000000000000000000000009671 151.0
PJD3_k127_4663991_6 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000001005 145.0
PJD3_k127_4663991_7 ankyrin repeat - - - 0.0000000000000000000000000001415 122.0
PJD3_k127_4663991_8 PFAM Ankyrin repeat K06867 - - 0.0000000000000000000001169 108.0
PJD3_k127_4667349_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K21136 - - 0.00000000000002586 87.0
PJD3_k127_4667349_1 diguanylate cyclase K02488 - 2.7.7.65 0.00000000007968 76.0
PJD3_k127_4670365_0 Tetratricopeptide repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000001182 240.0
PJD3_k127_4670365_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000003491 207.0
PJD3_k127_4670365_2 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000001935 177.0
PJD3_k127_4670365_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00009412 53.0
PJD3_k127_4687186_0 helicase activity - - - 0.00000000000000000000000000000000000000000000000000000000002032 212.0
PJD3_k127_4687186_1 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000004969 211.0
PJD3_k127_4690164_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 411.0
PJD3_k127_4690164_1 Belongs to the UPF0178 family K09768 - - 0.00000000000000000000000000000000000000000000000000000000001465 210.0
PJD3_k127_4690164_2 Domain of unknown function (DUF4442) - - - 0.0000000000000000000000000000002911 128.0
PJD3_k127_4699964_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004096 462.0
PJD3_k127_4699964_1 Belongs to the skp family K06142 - - 0.0000000000000000000000000000000000000000006075 164.0
PJD3_k127_4699964_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000397 49.0
PJD3_k127_4732805_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 GO:0000027,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022607,GO:0022613,GO:0022618,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032794,GO:0034622,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0043021,GO:0043022,GO:0043023,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:0097216,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001492 586.0
PJD3_k127_4732805_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007812 272.0
PJD3_k127_4732805_2 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000008166 61.0
PJD3_k127_4732805_3 protein conserved in bacteria - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0009897,GO:0009986,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031233,GO:0044425,GO:0044459,GO:0044464,GO:0071575,GO:0071944,GO:0098552 - 0.00006446 47.0
PJD3_k127_4732944_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1095.0
PJD3_k127_4732944_1 Part of a membrane complex involved in electron transport K03615 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 314.0
PJD3_k127_4733594_0 deoxyribonuclease I activity K01150 - 3.1.21.1 0.000000000000000000006185 97.0
PJD3_k127_4736963_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 2.767e-254 797.0
PJD3_k127_4736963_1 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000001143 145.0
PJD3_k127_4736963_2 Preprotein translocase subunit YajC K03210 - - 0.000000000000000000000000000000000005831 139.0
PJD3_k127_4736963_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000002271 108.0
PJD3_k127_474476_0 Major Facilitator Superfamily K02575 - - 1.836e-246 769.0
PJD3_k127_474476_1 kinase domain - - - 2.118e-213 676.0
PJD3_k127_474476_2 TIGRFAM nitrite reductase NAD(P)H , large subunit K00362 - 1.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 298.0
PJD3_k127_4759452_0 COG0608 Single-stranded DNA-specific exonuclease K07462 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 2.217e-212 675.0
PJD3_k127_4759452_1 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002604 560.0
PJD3_k127_4759452_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 341.0
PJD3_k127_4759452_3 May be involved in the biosynthesis of molybdopterin K03638 - 2.7.7.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002456 271.0
PJD3_k127_4759452_4 Prokaryotic N-terminal methylation motif K02655 - - 0.0000000000000000000000000000000000000000006843 162.0
PJD3_k127_4759452_5 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000009652 139.0
PJD3_k127_4759452_6 - - - - 0.00000000000000000000000008854 118.0
PJD3_k127_4759452_7 - - - - 0.000000000005037 70.0
PJD3_k127_4763120_0 Belongs to the UPF0753 family K09822 - - 0.0 1103.0
PJD3_k127_4763120_1 Belongs to the P(II) protein family - - - 0.0000000000000000000000000000000000000000000000000000004136 194.0
PJD3_k127_4763120_2 Sulfate permease family K03321 - - 0.0000000000000000161 82.0
PJD3_k127_4765687_0 Hydantoinase/oxoprolinase K01473 - 3.5.2.14 2.413e-230 732.0
PJD3_k127_4765687_1 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 504.0
PJD3_k127_4765687_2 P-loop ATPase protein family K06958 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000004477 256.0
PJD3_k127_4765687_3 Protoglobin K13590,K21019 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000002805 204.0
PJD3_k127_4765687_4 pfam nudix K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000001563 189.0
PJD3_k127_4765687_5 system, fructose subfamily IIA component K02821 - 2.7.1.194 0.0000000000000000000000000000000005689 135.0
PJD3_k127_4765687_6 Phosphotransferase System K08485,K11189 GO:0003674,GO:0003824,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006808,GO:0006810,GO:0008150,GO:0008152,GO:0008643,GO:0009401,GO:0009987,GO:0010033,GO:0010243,GO:0016310,GO:0016740,GO:0016772,GO:0019538,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0065007,GO:0071702,GO:0071704,GO:1901564,GO:1901698 - 0.0000000000000000000000000005233 115.0
PJD3_k127_4766753_0 TIGRFAM Undecaprenyl-phosphate glucose phosphotransferase K03606 - - 0.0000000000000000000000000000000000000000000000000000000000005048 211.0
PJD3_k127_4766753_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.000000000000000000000000000000000000000000000000000003352 190.0
PJD3_k127_4766753_2 VanZ like family - - - 0.000000000000000000001045 99.0
PJD3_k127_4788542_0 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 353.0
PJD3_k127_4788542_1 Phosphate-binding protein K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 340.0
PJD3_k127_4788542_2 phosphate regulon transcriptional regulatory protein PhoB K07657 GO:0001098,GO:0001108,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042802,GO:0043254,GO:0044087,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006175 293.0
PJD3_k127_4788542_3 Cytochrome c - - - 0.000000000000000000000001655 119.0
PJD3_k127_4788542_4 PFAM cytochrome c, class I - - - 0.000000000001911 80.0
PJD3_k127_4788542_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000005008 72.0
PJD3_k127_4789862_0 Fumarate reductase flavoprotein C-term K00394 - 1.8.99.2 0.0 1048.0
PJD3_k127_4789862_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 5.943e-214 675.0
PJD3_k127_4789862_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006332 422.0
PJD3_k127_4789862_3 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 328.0
PJD3_k127_4789862_4 Adenosine-5'-phosphosulfate reductase beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 316.0
PJD3_k127_4789862_5 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001152 244.0
PJD3_k127_4789862_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009118 248.0
PJD3_k127_4789862_7 Protein of unknown function (DUF2905) - - - 0.00000000000000000001551 92.0
PJD3_k127_4805212_0 Protein of unknown function, DUF255 K06888 - - 2.822e-206 653.0
PJD3_k127_4805212_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 481.0
PJD3_k127_4805212_2 SAM-dependent K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 408.0
PJD3_k127_4805212_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 388.0
PJD3_k127_4805212_4 Reduces the stability of FtsZ polymers in the presence of ATP K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 314.0
PJD3_k127_4805212_5 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287,K18590 GO:0000166,GO:0003674,GO:0003824,GO:0004146,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008144,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016646,GO:0019842,GO:0031406,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050896,GO:0051870,GO:0051871,GO:0055114,GO:0070401,GO:0070402,GO:0072341,GO:0097159,GO:1901265,GO:1901363 1.5.1.3 0.000000000000000000000000000000000000000000000000001348 187.0
PJD3_k127_480841_0 cytochrome c biogenesis protein K07399 - - 0.0000000000000000000000000000000000000000000000000000000183 206.0
PJD3_k127_480841_1 Lactonase, 7-bladed beta-propeller K07404 - 3.1.1.31 0.000000000000000000007247 106.0
PJD3_k127_4808616_0 CBS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002864 509.0
PJD3_k127_4808616_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 428.0
PJD3_k127_4808616_2 Belongs to the agmatine deiminase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008323 376.0
PJD3_k127_4808616_3 transport system, permease component - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001247 265.0
PJD3_k127_4808616_4 cAMP phosphodiesterases class-II - - - 0.000000000000000000000000000000000000000001434 158.0
PJD3_k127_4808616_5 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000001744 99.0
PJD3_k127_4808616_6 DAHP synthetase I family K03856 - 2.5.1.54 0.0005102 43.0
PJD3_k127_4823671_0 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656,K03657 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044786,GO:0044787,GO:0046483,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 1.071e-231 734.0
PJD3_k127_4823671_1 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 497.0
PJD3_k127_4823671_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000005422 198.0
PJD3_k127_4823671_3 Thioredoxin-like - - - 0.000000000000000000000000000003195 126.0
PJD3_k127_4823671_4 Domain of Unknown Function (DUF349) - - - 0.000000000000000000000004227 115.0
PJD3_k127_4823671_5 LytTr DNA-binding domain K08083 - - 0.0000000000000000003432 89.0
PJD3_k127_4828446_0 Chemotaxis protein histidine kinase K03407 GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009892,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010605,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032879,GO:0032991,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0035556,GO:0036211,GO:0040011,GO:0040012,GO:0042221,GO:0042330,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046777,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050920,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0098561,GO:0140096,GO:1901564,GO:1901873,GO:1901875,GO:1902021,GO:2000145 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 576.0
PJD3_k127_4828446_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 462.0
PJD3_k127_4828446_2 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005065 296.0
PJD3_k127_4828446_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000001256 254.0
PJD3_k127_4834189_0 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) K05844 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 497.0
PJD3_k127_4834189_1 Succinylglutamate desuccinylase aspartoacylase K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 446.0
PJD3_k127_4834189_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000212 409.0
PJD3_k127_4834189_3 protein conserved in archaea - - - 0.0000000000000000000000000000000000000000000000000003658 187.0
PJD3_k127_4834189_4 Mechanosensitive ion channel - - - 0.00000000000000000000000002869 115.0
PJD3_k127_4834189_5 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000001528 97.0
PJD3_k127_4834189_6 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000008307 89.0
PJD3_k127_4844071_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1309.0
PJD3_k127_4844071_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 GO:0000166,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008144,GO:0008150,GO:0009898,GO:0009987,GO:0016020,GO:0017076,GO:0030554,GO:0032153,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051301,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363 - 9.131e-210 659.0
PJD3_k127_4844071_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 544.0
PJD3_k127_4844071_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 483.0
PJD3_k127_4844071_4 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 306.0
PJD3_k127_4844071_5 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000007007 158.0
PJD3_k127_4844071_6 Protein of unknown function (DUF721) - - - 0.000000000006638 69.0
PJD3_k127_4850762_0 - - - - 0.000000000000000000000000000000000000000001087 177.0
PJD3_k127_4852037_0 Cupin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000007736 224.0
PJD3_k127_4852037_1 ATP-grasp K01955 - 6.3.5.5 0.000000000000000000000000000000000000006048 154.0
PJD3_k127_4852037_2 Acetyltransferase (GNAT) domain - - - 0.000469 52.0
PJD3_k127_4854946_0 GGDEF domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 421.0
PJD3_k127_4866446_0 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000000000000000007423 248.0
PJD3_k127_4866446_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031410,GO:0031982,GO:0031984,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0097708,GO:0098791,GO:0140096,GO:1901564 - 0.00000000000000000000000000004326 127.0
PJD3_k127_4869496_0 COG4584 Transposase and inactivated derivatives - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 519.0
PJD3_k127_4869496_1 nitric oxide reductase activity K03809 - 1.6.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003379 361.0
PJD3_k127_4869496_2 COG1484 DNA replication protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005592 322.0
PJD3_k127_4869496_3 Transposase DDE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001657 240.0
PJD3_k127_4890619_0 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005975 395.0
PJD3_k127_4890619_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0000287,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0050518,GO:0052906,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 347.0
PJD3_k127_4890619_2 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000000001418 218.0
PJD3_k127_4890619_3 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000001901 203.0
PJD3_k127_4890619_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000000142 196.0
PJD3_k127_4890619_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000009065 189.0
PJD3_k127_4890619_6 Sel1-like repeats. K07126 - - 0.000000000000000000000000000000001001 137.0
PJD3_k127_4890619_7 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000003524 123.0
PJD3_k127_4890619_8 Glutaredoxin - - - 0.0000000000000000000000000001474 116.0
PJD3_k127_4890619_9 long-chain fatty acid transporting porin activity K07267 - - 0.0000000000000000004812 100.0
PJD3_k127_489472_0 Belongs to the peptidase S16 family - - - 1.646e-289 909.0
PJD3_k127_489472_1 Protein of unknown function (DUF2846) - - - 0.0000000000000003253 81.0
PJD3_k127_4904135_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000359 511.0
PJD3_k127_4904135_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 468.0
PJD3_k127_4904135_2 Peptidogalycan biosysnthesis/recognition K09919 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005085 356.0
PJD3_k127_4904135_3 DNA segregation ATPase FtsK SpoIIIE K03466 - - 0.0000000007431 61.0
PJD3_k127_4910863_0 Cysteine-rich domain K11473 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007727 278.0
PJD3_k127_4910863_1 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001035 253.0
PJD3_k127_4910863_2 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000001551 199.0
PJD3_k127_4910863_3 Ferredoxin - - - 0.00000000000000000000000000000000000000000002639 162.0
PJD3_k127_4910863_4 PFAM porin, Gram-negative type - - - 0.00000000000000000000005263 110.0
PJD3_k127_4911822_0 Transcriptional regulator, LysR family - - - 0.000000000000000000000000000000000000000000000000000000000000000005085 237.0
PJD3_k127_4923996_0 Protein of unknown function (DUF3570) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006299 307.0
PJD3_k127_4923996_1 Domain of unknown function (DUF4266) - - - 0.00000000000000000000569 94.0
PJD3_k127_4946958_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006405 392.0
PJD3_k127_4946958_1 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000001448 237.0
PJD3_k127_4946958_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000238 156.0
PJD3_k127_4946958_3 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000002572 85.0
PJD3_k127_495342_0 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 GO:0000287,GO:0003674,GO:0003824,GO:0004349,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0017144,GO:0018130,GO:0019202,GO:0019752,GO:0031406,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0055129,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901973 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 487.0
PJD3_k127_495342_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000000002465 107.0
PJD3_k127_4982733_0 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008194,GO:0008289,GO:0008610,GO:0008654,GO:0008915,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019637,GO:0019897,GO:0019898,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 400.0
PJD3_k127_4982733_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000007123 265.0
PJD3_k127_4982733_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006866 256.0
PJD3_k127_4985176_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 458.0
PJD3_k127_4989825_0 TIGRFAM molybdenum cofactor synthesis K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 489.0
PJD3_k127_4989825_1 Fatty acid hydroxylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 427.0
PJD3_k127_4989825_2 ABC-type tungstate transport system K05773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008253 312.0
PJD3_k127_4989825_3 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 311.0
PJD3_k127_4989825_4 ABC transporter K06857 - 3.6.3.55 0.0000000000000000000000000000000000000000000000000000000000000004086 238.0
PJD3_k127_4989825_5 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019720,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0061603,GO:0070568,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902757,GO:1902758 2.7.7.77 0.000000000000000000000000000000000000000000000000000000000000001028 237.0
PJD3_k127_4989825_6 PBP superfamily domain K05772 - - 0.000000000000000000000000000000000000000000000000000000443 196.0
PJD3_k127_4989825_7 Protein of unknown function (DUF1244) K09948 - - 0.0000000000000000000000000000000000000000000002337 169.0
PJD3_k127_4991630_0 uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 288.0
PJD3_k127_4991630_1 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000003106 231.0
PJD3_k127_4991630_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009628,GO:0009987,GO:0016787,GO:0016788,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000004642 93.0
PJD3_k127_4993253_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 3.355e-198 639.0
PJD3_k127_4993253_1 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 366.0
PJD3_k127_4993253_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000005542 163.0
PJD3_k127_4993253_3 NHL repeat - - - 0.0000000000002009 81.0
PJD3_k127_4993253_4 DOMON domain-containing protein - GO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0004500,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006584,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008150,GO:0008152,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016491,GO:0016705,GO:0016715,GO:0018958,GO:0022402,GO:0022607,GO:0031410,GO:0031982,GO:0031984,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051225,GO:0055114,GO:0070925,GO:0071704,GO:0071840,GO:0097708,GO:0098791,GO:1901360,GO:1901564,GO:1901615 - 0.0006302 52.0
PJD3_k127_5001358_0 Tetratricopeptide repeat K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001925 286.0
PJD3_k127_5031595_0 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 441.0
PJD3_k127_5031595_1 TraB family K09973 - - 0.000000000000000000000000000004999 128.0
PJD3_k127_5031595_2 Protein of unknown function (DUF3135) - - - 0.00000000000000002706 86.0
PJD3_k127_5033650_0 Sigma-70 factor, region 1.2 K03087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002665 419.0
PJD3_k127_5033650_1 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 415.0
PJD3_k127_5033650_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 358.0
PJD3_k127_5033650_3 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 284.0
PJD3_k127_5033650_4 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001 245.0
PJD3_k127_5033650_5 COG0739 Membrane proteins related to metalloendopeptidases K06194,K12943 GO:0000920,GO:0001896,GO:0005575,GO:0005623,GO:0008150,GO:0008219,GO:0009279,GO:0009987,GO:0012501,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0032153,GO:0042221,GO:0042493,GO:0043085,GO:0044093,GO:0044462,GO:0044464,GO:0050790,GO:0050896,GO:0051301,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000003628 213.0
PJD3_k127_5033650_6 protein conserved in bacteria - - - 0.0000000000000000000000000001775 121.0
PJD3_k127_5033650_7 PAAR repeat-containing protein - - - 0.0002543 44.0
PJD3_k127_5038681_0 Acetoacetyl-CoA synthase K01907 - 6.2.1.16 8.375e-273 854.0
PJD3_k127_5038681_1 Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate K03417 - 4.1.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005026 331.0
PJD3_k127_5038681_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000001057 231.0
PJD3_k127_5038681_3 Citrate synthase, C-terminal domain K01659 - 2.3.3.5 0.0000000000000000000000000000000000000000000000005978 178.0
PJD3_k127_5082538_0 PFAM Peptidase family M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 523.0
PJD3_k127_5082538_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004899 342.0
PJD3_k127_5082538_2 Helicase K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 336.0
PJD3_k127_5082538_3 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.000000000000000000000000000000000000000000000000000000000000001398 220.0
PJD3_k127_5082538_4 PFAM Peptidase M22, glycoprotease K14742 - - 0.00000000000000000000000000000000000000000000000000000000000005362 220.0
PJD3_k127_5082538_5 - - - - 0.0000000000000000000000000000000000001252 152.0
PJD3_k127_5082538_6 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000000003092 134.0
PJD3_k127_5082538_7 PFAM Pentapeptide repeats (8 copies) - - - 0.000000000000000000000000000000001693 143.0
PJD3_k127_5082538_8 Cytochrome c - - - 0.00000004563 59.0
PJD3_k127_5083164_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 2.255e-258 830.0
PJD3_k127_5083164_1 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 288.0
PJD3_k127_5083164_2 Cytochrome c K17223 - - 0.0000000000000000004133 91.0
PJD3_k127_5083164_3 extracellular matrix structural constituent - - - 0.000000000002451 78.0
PJD3_k127_5083164_6 Domain of unknown function DUF302 - - - 0.0000001603 58.0
PJD3_k127_5116212_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000002238 201.0
PJD3_k127_5116212_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000001545 182.0
PJD3_k127_5116212_2 Sel1-like repeats. K07126 - - 0.000000000000000000000000009177 126.0
PJD3_k127_5116212_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000002259 77.0
PJD3_k127_5125373_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 GO:0000819,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0022402,GO:0030541,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140097,GO:1901360 - 1.361e-256 797.0
PJD3_k127_5125373_1 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001048 265.0
PJD3_k127_5127054_0 acetyltransferase K03789 - 2.3.1.128 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000167 418.0
PJD3_k127_5127054_1 Cytochrome c - - - 0.00000000000000000000000004831 112.0
PJD3_k127_5127054_2 Protein of unknown function (DUF2817) - - - 0.00000000000000000000001392 102.0
PJD3_k127_5127054_3 - - - - 0.0004688 46.0
PJD3_k127_5132588_0 PFAM Phosphoribulokinase uridine kinase K00855 - 2.7.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 436.0
PJD3_k127_5132588_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 379.0
PJD3_k127_5132588_2 PFAM Peptidoglycan-binding lysin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 369.0
PJD3_k127_5132588_3 TIGRFAM DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 363.0
PJD3_k127_5132588_4 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000002032 247.0
PJD3_k127_5132588_5 Belongs to the Smg family K03747 - - 0.0000000000000000000000000000000000000000009979 162.0
PJD3_k127_5144087_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 2.206e-201 645.0
PJD3_k127_5144087_1 Ammonium transporter K03320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 509.0
PJD3_k127_5144087_2 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 427.0
PJD3_k127_5144087_3 Domain of unknown function (DUF4124) - - - 0.000000005217 64.0
PJD3_k127_5144616_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 8.046e-201 632.0
PJD3_k127_5144616_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003755 383.0
PJD3_k127_5144616_2 PFAM toluene tolerance K07323 - - 0.0000000000000000000000000000000000000003417 157.0
PJD3_k127_5144616_3 Belongs to the BolA IbaG family - GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051536,GO:0051537,GO:0051540 - 0.000000000000000000006928 96.0
PJD3_k127_5144616_4 NTP binding protein (Contains STAS domain) K07122 - - 0.000000000000005973 79.0
PJD3_k127_5144616_5 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000003326 62.0
PJD3_k127_5144616_6 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00002656 46.0
PJD3_k127_5152047_0 COG0668 Small-conductance mechanosensitive channel K16052 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 441.0
PJD3_k127_5152047_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 425.0
PJD3_k127_5152047_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 322.0
PJD3_k127_5152047_3 DsrE/DsrF-like family - - - 0.0000000000000000000000000000000000000000000000000000000001696 205.0
PJD3_k127_5152047_4 phosphoribosyltransferase K00760 - 2.4.2.8 0.0000000000000000000001381 99.0
PJD3_k127_5159969_0 UPF0126 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 348.0
PJD3_k127_5159969_1 HPP family K07168 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 333.0
PJD3_k127_5159969_2 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000001047 214.0
PJD3_k127_5159969_3 cytochrome C-type protein K02569 - - 0.0000000000000000000000000000000000000000008463 168.0
PJD3_k127_5159969_4 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000002989 101.0
PJD3_k127_5177678_0 Fis Family K02584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 588.0
PJD3_k127_5177678_1 OsmC-like protein - - - 0.0000000000000000002062 89.0
PJD3_k127_5177678_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.0000000000000002815 78.0
PJD3_k127_5189959_0 HAD-superfamily hydrolase, subfamily IIB K00696 - 2.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 564.0
PJD3_k127_5189959_1 ABC transporter C-terminal domain K15738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003173 424.0
PJD3_k127_5189959_2 response regulator, receiver K07657 - - 0.000000000000000000000000000000000000000000000000000000001019 208.0
PJD3_k127_5208408_0 MMPL family K07003 - - 1.217e-298 947.0
PJD3_k127_5208408_1 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000003552 239.0
PJD3_k127_5220055_0 Serine/threonine phosphatases, family 2C, catalytic domain - - - 2.342e-265 827.0
PJD3_k127_5220055_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 583.0
PJD3_k127_5220055_2 PFAM Formate nitrite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 470.0
PJD3_k127_5220055_3 Cyanate lyase C-terminal domain, Cyanate hydratase K01725 - 4.2.1.104 0.00000000000000000000000000000000000000000000000000000000000000000001141 235.0
PJD3_k127_5220055_4 Transposase K07491 - - 0.0000000000122 66.0
PJD3_k127_5220055_5 Bacterial Ig-like domain 2 - - - 0.0006633 48.0
PJD3_k127_5223689_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 4.146e-297 923.0
PJD3_k127_5223689_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 2.675e-260 822.0
PJD3_k127_5223689_2 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 4.997e-251 781.0
PJD3_k127_5223689_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 608.0
PJD3_k127_5223689_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000000000000002064 166.0
PJD3_k127_5223689_5 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000005787 133.0
PJD3_k127_5233431_0 Aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009865 516.0
PJD3_k127_5233431_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000549 438.0
PJD3_k127_5233431_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 437.0
PJD3_k127_5233431_3 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000001004 228.0
PJD3_k127_5233431_4 cytochrome - - - 0.0000000000000000000000000000000000000003339 157.0
PJD3_k127_5233431_5 Bacterial SH3 domain homologues K07184 - - 0.000000000000000000000001317 113.0
PJD3_k127_5233431_6 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000976 79.0
PJD3_k127_5274426_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004934 590.0
PJD3_k127_5274426_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 481.0
PJD3_k127_5274426_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 GO:0001505,GO:0003674,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009987,GO:0016054,GO:0017144,GO:0019464,GO:0019752,GO:0031405,GO:0031406,GO:0033293,GO:0036094,GO:0042133,GO:0042135,GO:0042737,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048037,GO:0050662,GO:0065007,GO:0065008,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901681 - 0.00000000000000000000000000000000000000000000000001416 183.0
PJD3_k127_5290784_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007401 482.0
PJD3_k127_5290784_1 PFAM Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 303.0
PJD3_k127_5302489_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000003169 211.0
PJD3_k127_5302489_1 HIT domain - - - 0.0000000000000000000000000000002184 127.0
PJD3_k127_5302489_2 - K19168 - - 0.000008384 54.0
PJD3_k127_530545_0 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 326.0
PJD3_k127_530545_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000001642 215.0
PJD3_k127_530545_2 protein containing a von Willebrand factor type A (vWA) domain K07114 - - 0.00000000000000002769 90.0
PJD3_k127_5322977_0 COG1404 Subtilisin-like serine proteases K14645 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 674.0
PJD3_k127_5322977_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009324 486.0
PJD3_k127_5322977_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 442.0
PJD3_k127_5322977_3 TIGRFAM 3'(2'),5'-bisphosphate nucleotidase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 325.0
PJD3_k127_5322977_4 FKBP-type peptidyl-prolyl cis-trans isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000008735 229.0
PJD3_k127_5322977_5 PFAM NUDIX hydrolase K08312 - - 0.00000000000000000000000000000000000000000000000000000000000001183 221.0
PJD3_k127_5322977_6 Belongs to the bacterial histone-like protein family - - - 0.00000000000000000000000000000000000003717 146.0
PJD3_k127_5322977_7 PrcB C-terminal - - - 0.0001757 51.0
PJD3_k127_5328497_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 331.0
PJD3_k127_5328497_1 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 290.0
PJD3_k127_5328497_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001488 258.0
PJD3_k127_5328497_3 - - - - 0.0000000000000000000000002735 115.0
PJD3_k127_5331829_0 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 2.003e-196 621.0
PJD3_k127_5331829_1 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 299.0
PJD3_k127_5331829_2 metallophosphoesterase K07098 - - 0.0000000000000000000000000001956 116.0
PJD3_k127_5334561_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 GO:0000819,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0022402,GO:0030541,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140097,GO:1901360 - 0.0 1033.0
PJD3_k127_5334561_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 316.0
PJD3_k127_5334561_2 Protein of unknown function (DUF3501) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005813 257.0
PJD3_k127_5334561_3 PFAM Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000004441 213.0
PJD3_k127_5352797_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 443.0
PJD3_k127_5352797_1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000000000000000000000000575 143.0
PJD3_k127_5352797_2 protein acetylation - - - 0.000000000000000000000000007581 116.0
PJD3_k127_5374254_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.000000000000000000000000000000000008316 149.0
PJD3_k127_5374254_1 COG1278 Cold shock proteins K03704 - - 0.000000000000000000000000000001001 121.0
PJD3_k127_5374254_2 Putative quorum-sensing-regulated virulence factor K09954 - - 0.00000000000002822 76.0
PJD3_k127_5396694_0 PFAM Ammonium Transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002427 273.0
PJD3_k127_5396694_1 nucleotide catabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000005302 242.0
PJD3_k127_5396694_2 COGs COG0790 FOG TPR repeat SEL1 subfamily K07126 - - 0.00000000000000000000000000000000000000000001043 171.0
PJD3_k127_5396694_3 Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase K07740 GO:0000988,GO:0000989,GO:0003674,GO:0008150,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.00000000000000000000000000002448 122.0
PJD3_k127_541309_0 TIGRFAM amidase, hydantoinase carbamoylase K06016 - 3.5.1.6,3.5.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 546.0
PJD3_k127_541309_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 374.0
PJD3_k127_541309_2 Isochorismatase hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006256 331.0
PJD3_k127_541309_3 - - - - 0.0000000000000000000000000009868 117.0
PJD3_k127_5417707_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 464.0
PJD3_k127_5417707_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 378.0
PJD3_k127_5417707_2 MraZ protein, putative antitoxin-like K03925 - - 0.000000000000000000000000000000000000000000003583 168.0
PJD3_k127_5417707_3 - - - - 0.000000000000000000000000188 106.0
PJD3_k127_5417707_4 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.000000000000005314 79.0
PJD3_k127_5417707_5 - - - - 0.0000004986 51.0
PJD3_k127_5434639_0 protein conserved in bacteria - - - 3.542e-197 623.0
PJD3_k127_5434639_1 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002288 231.0
PJD3_k127_5434639_2 Protein involved in outer membrane biogenesis - - - 0.00000000000000000000000000000000000000000000000000000003399 202.0
PJD3_k127_544492_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 8.523e-232 722.0
PJD3_k127_544492_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 516.0
PJD3_k127_544492_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000005139 232.0
PJD3_k127_544492_3 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000000000004907 188.0
PJD3_k127_544492_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000000000000001753 99.0
PJD3_k127_5451576_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 5.61e-211 665.0
PJD3_k127_5451576_1 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 293.0
PJD3_k127_5451576_2 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008556 244.0
PJD3_k127_5451576_3 PFAM molybdopterin biosynthesis MoaE K03635 - 2.8.1.12 0.0000000000000000000000000000000002475 133.0
PJD3_k127_5461077_0 COG1994 Zn-dependent proteases - - - 0.000000000000000000000000000000000003832 158.0
PJD3_k127_5461077_1 Ceramidase - - - 0.00000000000000000000000001597 113.0
PJD3_k127_5527939_0 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 616.0
PJD3_k127_5527939_1 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002807 409.0
PJD3_k127_5527939_2 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 285.0
PJD3_k127_5527939_3 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002063 254.0
PJD3_k127_5527939_4 Beta-lactamase enzyme family K07262 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003183 249.0
PJD3_k127_5537819_0 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000421 505.0
PJD3_k127_5537819_1 XRE family transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 299.0
PJD3_k127_5537819_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002311 248.0
PJD3_k127_5537819_3 Thermostable hemolysin - - - 0.00000000000000000000009116 101.0
PJD3_k127_5537819_4 P pilus assembly Cpx signaling pathway, periplasmic inhibitor zinc-resistance associated protein K06006 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006457,GO:0008150,GO:0009987,GO:0010033,GO:0014070,GO:0030288,GO:0030313,GO:0031975,GO:0042221,GO:0042597,GO:0044464,GO:0050896,GO:0051082,GO:0061077,GO:1990507 - 0.0000000002738 68.0
PJD3_k127_554750_0 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 580.0
PJD3_k127_554750_1 Cytochrome B - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007774 340.0
PJD3_k127_554750_2 Belongs to the glutathione peroxidase family - - - 0.00000000000003135 73.0
PJD3_k127_5549810_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1182.0
PJD3_k127_5549810_1 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.000000000000000000000000000000000000000008357 158.0
PJD3_k127_5549810_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.000000000000000000000008031 100.0
PJD3_k127_5566820_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006575 308.0
PJD3_k127_5566820_1 Protein of unknown function (DUF3025) - - - 0.0000000000000000000000000000000000000000000000000000000000001517 222.0
PJD3_k127_5566820_2 protein serine/threonine phosphatase activity K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000007072 217.0
PJD3_k127_5566820_3 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814,K05365,K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000002045 168.0
PJD3_k127_5566820_4 AIG2-like family - - - 0.000000000000000000000000000000000001629 145.0
PJD3_k127_5566820_5 PFAM peptidase M48 Ste24p - - - 0.000000000000000000000000000001091 136.0
PJD3_k127_5566820_6 PFAM cytochrome c, class I K08738 - - 0.00000000000000000000005649 106.0
PJD3_k127_5566820_7 outer membrane lipoprotein - - - 0.0000000000000000000119 99.0
PJD3_k127_5570576_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004134 283.0
PJD3_k127_5570576_1 Sel1-like repeats. K07126 - - 0.00000000000000000000000000000000000000000000000009458 192.0
PJD3_k127_5577549_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1380.0
PJD3_k127_5577549_1 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002698 265.0
PJD3_k127_5577549_2 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000001471 208.0
PJD3_k127_5577549_3 Belongs to the NadC ModD family K00767 GO:0003674,GO:0003824,GO:0004514,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016054,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0034213,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042737,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0072526,GO:0090407,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605 2.4.2.19 0.0000000000000000000000000000000000000000004106 161.0
PJD3_k127_5590324_0 Sucrose phosphate synthase, sucrose phosphatase-like K13058 GO:0003674,GO:0003824,GO:0005975,GO:0005984,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0034637,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0071704,GO:1901576 2.4.1.246 0.0 1091.0
PJD3_k127_5590324_1 glycosyl transferase group 1 K00696 - 2.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 431.0
PJD3_k127_5590324_2 PFAM Binding-protein-dependent transport K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009353 386.0
PJD3_k127_5590324_3 PFAM Carbohydrate purine kinase K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 292.0
PJD3_k127_5590324_4 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000207 214.0
PJD3_k127_5601274_0 PFAM conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000371 265.0
PJD3_k127_5601274_1 Nucleoside 2-deoxyribosyltransferase YtoQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000006715 233.0
PJD3_k127_5601274_2 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005488,GO:0005506,GO:0008081,GO:0008150,GO:0008198,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0042545,GO:0042578,GO:0043167,GO:0043169,GO:0045229,GO:0046872,GO:0046914,GO:0071554,GO:0071555,GO:0071840 3.1.4.53 0.00000000000000000000000000000000000000000000000000000001144 206.0
PJD3_k127_5601274_3 - - - - 0.000000000000000000000000000000000000000000000000001817 192.0
PJD3_k127_5601274_4 - - - - 0.0000000000000000000000000002607 118.0
PJD3_k127_5601274_6 - - - - 0.00000004057 65.0
PJD3_k127_5614601_0 Chromate K07240 - - 7.299e-207 651.0
PJD3_k127_5614601_1 membrane organization K20543 - - 0.0000000000000000000000000000000000000000001139 172.0
PJD3_k127_564761_0 Iron-sulfur cluster binding protein K18929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007701 479.0
PJD3_k127_564761_1 (Fe-S) oxidoreductase K18928 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 326.0
PJD3_k127_5648087_0 COG4206 Outer membrane cobalamin receptor protein K16092 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0006810,GO:0006811,GO:0008150,GO:0015075,GO:0015267,GO:0015318,GO:0015889,GO:0015893,GO:0016020,GO:0016021,GO:0019904,GO:0022803,GO:0022838,GO:0022857,GO:0031224,GO:0034220,GO:0042221,GO:0042493,GO:0044425,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051234,GO:0055085,GO:0071702,GO:0071705 - 5.397e-197 635.0
PJD3_k127_5648087_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008878,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0070566,GO:0071704,GO:1901576 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000004636 205.0
PJD3_k127_5648087_2 transferase activity, transferring glycosyl groups - - - 0.000000003148 62.0
PJD3_k127_5659619_0 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 7.526e-224 702.0
PJD3_k127_5659619_1 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 297.0
PJD3_k127_5659619_2 Response regulator of the LytR AlgR family K02477,K08083 - - 0.000000000000000000000000000000000000000000000000000005515 194.0
PJD3_k127_566240_0 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 1.292e-206 651.0
PJD3_k127_566240_1 Protein of unknown function (DUF2817) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 344.0
PJD3_k127_5675135_0 Surface antigen variable number K07278 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007139 346.0
PJD3_k127_5675135_1 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008715 255.0
PJD3_k127_5675135_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000005434 234.0
PJD3_k127_5675135_3 - - - - 0.0000000000000000000000219 102.0
PJD3_k127_5675135_4 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000007591 112.0
PJD3_k127_5675135_5 Domain of unknown function (DUF1971) - - - 0.00000000000000000000402 98.0
PJD3_k127_5678309_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003869 501.0
PJD3_k127_5678309_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0008033,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016740,GO:0016765,GO:0019222,GO:0031323,GO:0031326,GO:0032268,GO:0033554,GO:0034248,GO:0034470,GO:0034605,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043555,GO:0044237,GO:0044238,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051716,GO:0052381,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1990497,GO:2000112,GO:2000765 2.5.1.75 0.00000000000000000000000000000000000000000000000000000008788 199.0
PJD3_k127_5678309_2 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000000000000000000002646 141.0
PJD3_k127_5717976_0 Protein of unknown function (DUF1538) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 350.0
PJD3_k127_5717976_1 Protein of unknown function (DUF1538) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 327.0
PJD3_k127_5717976_2 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000001007 235.0
PJD3_k127_5717976_3 CBS domain - - - 0.0000000000000000000000000000000000000000000000002649 179.0
PJD3_k127_5717976_4 Nitrogen regulatory protein P-II - - - 0.000000000000000000000000000000000000000000000001001 176.0
PJD3_k127_5717976_5 ATP-independent chaperone mediated protein folding - - - 0.0000000000000000000000000000000000000000000147 169.0
PJD3_k127_5717976_6 Zinc-ribbon containing domain - - - 0.00000000000000000000000000000000002163 141.0
PJD3_k127_5718936_0 in Yersinia the HmsR protein is an inner membrane protein K11936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 450.0
PJD3_k127_5718936_1 Predicted periplasmic lipoprotein (DUF2279) K05811 - - 0.00000003997 59.0
PJD3_k127_5727007_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 3.221e-252 784.0
PJD3_k127_5727007_1 PFAM aspartate ornithine carbamoyltransferase carbamoyl-P binding K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 479.0
PJD3_k127_5727007_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 310.0
PJD3_k127_5743812_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.091e-261 812.0
PJD3_k127_5743812_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.00000000000000000000000000000000000000001381 153.0
PJD3_k127_5743812_2 PFAM Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.0000000000000000000000008116 105.0
PJD3_k127_5754827_0 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000001899 201.0
PJD3_k127_5754827_1 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000001256 78.0
PJD3_k127_5759903_0 6-phosphogluconolactonase activity - - - 6.221e-317 998.0
PJD3_k127_5759903_1 COG0642 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 330.0
PJD3_k127_5759903_2 Bacterial extracellular solute-binding protein K02020 - - 0.00000000002151 64.0
PJD3_k127_5774512_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 2.85e-283 874.0
PJD3_k127_5774512_1 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 501.0
PJD3_k127_5774512_2 VirC1 protein K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000007669 231.0
PJD3_k127_5774512_3 Predicted nucleotide-binding protein containing TIR-like domain - - - 0.0000000000001128 76.0
PJD3_k127_5774512_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K10936,K16079 - - 0.000003595 56.0
PJD3_k127_5806681_0 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 306.0
PJD3_k127_5806681_1 protein conserved in bacteria K09908 - - 0.0000000001227 71.0
PJD3_k127_5806879_0 TIGRFAM glutamine synthetase, type I K01915 - 6.3.1.2 4.93e-265 820.0
PJD3_k127_5806879_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 357.0
PJD3_k127_5806879_2 signal transduction histidine kinase K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000264 350.0
PJD3_k127_5806879_3 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000001579 208.0
PJD3_k127_5806879_4 sulfur carrier activity K04085 - - 0.0000000000000000000000003863 106.0
PJD3_k127_5806879_5 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07712 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000137 104.0
PJD3_k127_5806879_6 Domain of unknown function (DUF4124) - - - 0.0000002158 60.0
PJD3_k127_5818152_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000593 225.0
PJD3_k127_5818152_1 SOUL heme-binding protein - - - 0.000000000000000000000000000000000000000008782 161.0
PJD3_k127_5818152_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000001421 115.0
PJD3_k127_5818152_3 - - - - 0.0000000000000000004468 92.0
PJD3_k127_5818152_4 AntiSigma factor - - - 0.000003923 56.0
PJD3_k127_5819938_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.393e-258 807.0
PJD3_k127_5819938_1 Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.00002288 53.0
PJD3_k127_582611_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 4.484e-277 859.0
PJD3_k127_582611_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 7.78e-241 751.0
PJD3_k127_582611_10 Copper chaperone PCu(A)C K09796 - - 0.000000000000000002486 93.0
PJD3_k127_582611_11 Metallo-beta-lactamase superfamily - - - 0.0000000000000002518 84.0
PJD3_k127_582611_12 - - - - 0.00000000028 65.0
PJD3_k127_582611_13 PilZ domain - - - 0.00001084 52.0
PJD3_k127_582611_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824 450.0
PJD3_k127_582611_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 446.0
PJD3_k127_582611_4 PFAM Ion transport K08714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 346.0
PJD3_k127_582611_5 Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Prokaryotic type I sub-subfamily K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006842 314.0
PJD3_k127_582611_6 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004613 286.0
PJD3_k127_582611_7 With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P K04568 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006430,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016746,GO:0016755,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052868,GO:0071704,GO:0071915,GO:0072580,GO:0072581,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000003297 260.0
PJD3_k127_582611_8 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005488,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0046872,GO:0046914,GO:0052717,GO:0071704,GO:0090304,GO:1901360 3.5.4.33 0.000000000000000000000000000000000000000000000000000000000085 207.0
PJD3_k127_582611_9 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000003801 151.0
PJD3_k127_5837131_0 COG0659 Sulfate permease and related transporters (MFS superfamily) K03321 - - 1.051e-223 703.0
PJD3_k127_5837131_1 Glucose-regulated metallo-peptidase M90 K09933 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 307.0
PJD3_k127_5837131_2 Lysine methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001986 232.0
PJD3_k127_5837131_3 Lipase (class 3) - - - 0.0000000000000000000000000000000000000000000000000000000006166 211.0
PJD3_k127_5837131_4 PFAM nuclease (SNase domain protein) - - - 0.00000000001368 70.0
PJD3_k127_5849478_0 Multicopper oxidase - - - 6.986e-204 649.0
PJD3_k127_5849478_1 COG1716 FOG FHA domain - - - 0.0000000002549 66.0
PJD3_k127_5871491_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.391e-215 675.0
PJD3_k127_5871491_1 Sulfatase K03760 - 2.7.8.43 0.000000000000000000000000000000000000000000000000000000000000000000000001603 256.0
PJD3_k127_5871491_2 mechanosensitive ion channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000001457 233.0
PJD3_k127_5902366_0 Dioxygenase K00449 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000002734 214.0
PJD3_k127_5902366_1 Belongs to the Nudix hydrolase family K01515,K03574 - 3.6.1.13,3.6.1.55 0.0000000000000000000000000000000002365 136.0
PJD3_k127_5902366_2 D-alanyl-D-alanine carboxypeptidase K07260 - 3.4.17.14 0.000000000000000000000000007154 110.0
PJD3_k127_5902366_3 Belongs to the P(II) protein family - - - 0.0000000000008097 73.0
PJD3_k127_5902366_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0004188 49.0
PJD3_k127_5919742_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0001130,GO:0001131,GO:0001141,GO:0001217,GO:0002161,GO:0002196,GO:0003674,GO:0003700,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016597,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0052689,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.1.1.7 0.0 1065.0
PJD3_k127_5919742_1 amine dehydrogenase activity - - - 7.132e-233 745.0
PJD3_k127_5919742_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 1.703e-213 668.0
PJD3_k127_5919742_3 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 - - 0.00000000000000000000001073 101.0
PJD3_k127_5936962_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 2.386e-309 955.0
PJD3_k127_5936962_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008383 563.0
PJD3_k127_5936962_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 342.0
PJD3_k127_5936962_3 PFAM Positive regulator of sigma(E), RseC MucC K03803 - - 0.000000000000000116 87.0
PJD3_k127_5936962_4 PFAM MucB RseB K03598 - - 0.00005571 47.0
PJD3_k127_5945754_0 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 5.45e-197 623.0
PJD3_k127_5945754_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000008081 265.0
PJD3_k127_5945754_2 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000567 208.0
PJD3_k127_5945754_3 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.0000000000000000000000000000000000000000000000000000001816 199.0
PJD3_k127_5945754_4 Hemimethylated DNA-binding protein YccV like K11940 - - 0.000000000000000000000000008084 111.0
PJD3_k127_5945754_5 - - - - 0.00000001095 63.0
PJD3_k127_5954296_0 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 491.0
PJD3_k127_5954296_1 Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host K05801 - - 0.0000000000000000000000000000000000000000000000000000001512 203.0
PJD3_k127_5967049_0 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001486 281.0
PJD3_k127_5967049_1 Cytochrome c554 and c-prime - - - 0.00000000000000000000000000000000000000000000000000000001651 221.0
PJD3_k127_5967049_2 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000007316 177.0
PJD3_k127_5967049_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000002484 122.0
PJD3_k127_5995257_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010467,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043531,GO:0044238,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0050896,GO:0051604,GO:0051716,GO:0070417,GO:0071704,GO:0097159,GO:0097367,GO:0097428,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1990230,GO:1990234 - 4.798e-252 791.0
PJD3_k127_5995257_1 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 3.017e-212 664.0
PJD3_k127_5995257_10 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 GO:0006457,GO:0008150,GO:0009987 - 0.000000000000000000000000000000000000004335 152.0
PJD3_k127_5995257_11 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000002741 126.0
PJD3_k127_5995257_12 Fe-S assembly protein IscX - GO:0003674,GO:0004857,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0030234,GO:0031163,GO:0043086,GO:0043167,GO:0043169,GO:0044085,GO:0044092,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050790,GO:0051186,GO:0065007,GO:0065009,GO:0071840,GO:0098772 - 0.00000000000000000000000008406 108.0
PJD3_k127_5995257_13 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K15396 - 2.1.1.200 0.00000000000000006554 81.0
PJD3_k127_5995257_14 protein conserved in bacteria K15539 - - 0.00000000002194 72.0
PJD3_k127_5995257_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 499.0
PJD3_k127_5995257_3 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006633 372.0
PJD3_k127_5995257_4 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000000007191 248.0
PJD3_k127_5995257_5 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000001334 220.0
PJD3_k127_5995257_6 Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins K13643 - - 0.000000000000000000000000000000000000000000000000000000000000001707 221.0
PJD3_k127_5995257_7 ferredoxin, 2Fe-2S K04755 - - 0.000000000000000000000000000000000000000000000000000000006302 199.0
PJD3_k127_5995257_8 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.000000000000000000000000000000000000000000000000000001925 200.0
PJD3_k127_5995257_9 Is able to transfer iron-sulfur clusters to apo- ferredoxin. Multiple cycles of 2Fe2S cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system K13628 - - 0.0000000000000000000000000000000000000000000000000001413 186.0
PJD3_k127_600026_0 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes K00164 GO:0003674,GO:0003824,GO:0004591,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0055114,GO:0071704,GO:0072350,GO:1902494,GO:1990204,GO:1990234 1.2.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007405 404.0
PJD3_k127_600026_1 Lysine 2,3-aminomutase K01843 - 5.4.3.2 0.0000000000000000000000002222 109.0
PJD3_k127_6008598_0 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006174 384.0
PJD3_k127_6008598_1 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0000287,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019899,GO:0022613,GO:0032296,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.00000000000000000000000000000000000000000000000000000000000000000000007517 248.0
PJD3_k127_6008598_2 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000005533 183.0
PJD3_k127_6008598_3 Domain of unknown function (DUF4845) - - - 0.00002387 48.0
PJD3_k127_6009940_0 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 507.0
PJD3_k127_6009940_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002507 279.0
PJD3_k127_6009940_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009774 250.0
PJD3_k127_6009940_3 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0005488,GO:0005515,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000002104 213.0
PJD3_k127_6009940_4 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052913,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.171 0.0000000000000000000000000000000000000000000000000002285 191.0
PJD3_k127_6009940_5 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000006358 189.0
PJD3_k127_6009940_6 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000004641 160.0
PJD3_k127_6009940_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000003267 124.0
PJD3_k127_6034189_0 FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation K02410 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000431 382.0
PJD3_k127_6034189_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006787 258.0
PJD3_k127_6034189_2 The M ring may be actively involved in energy transduction K02409 - - 0.000000000000000000000000000003205 132.0
PJD3_k127_6042405_0 PFAM glycosyl transferase family 35 K00688 - 2.4.1.1 1.453e-245 772.0
PJD3_k127_6042405_1 Belongs to the glycosyl hydrolase 57 family - - - 8.494e-230 724.0
PJD3_k127_6042405_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 1.913e-206 648.0
PJD3_k127_6042405_3 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 549.0
PJD3_k127_6042405_4 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 520.0
PJD3_k127_6051025_0 Domain of unknown function DUF11 - - - 0.0000002337 63.0
PJD3_k127_6052661_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 530.0
PJD3_k127_6052661_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0000005826 51.0
PJD3_k127_6068272_0 Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs K15257 GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016740,GO:0016741,GO:0016765,GO:0022607,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 373.0
PJD3_k127_6068272_1 Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) K15256 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002378 272.0
PJD3_k127_6068272_2 Belongs to the peptidase S11 family K07262 - - 0.00005127 46.0
PJD3_k127_6128966_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 7.995e-205 643.0
PJD3_k127_6128966_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 517.0
PJD3_k127_6128966_2 Anthranilate synthase component I K01657,K01665 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003657 471.0
PJD3_k127_6128966_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005803 452.0
PJD3_k127_6128966_4 Acyl transferase domain K00645 GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006163 392.0
PJD3_k127_6128966_5 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 373.0
PJD3_k127_6128966_6 PFAM Aminotransferase class IV K02619 - 4.1.3.38 0.00000000000000000000000000000000000000000000000000000000000000000001076 241.0
PJD3_k127_6128966_7 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000000000000000000242 132.0
PJD3_k127_6153190_0 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0050896,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 430.0
PJD3_k127_6153190_1 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000007535 198.0
PJD3_k127_61560_0 pfam mofrl K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 309.0
PJD3_k127_61560_1 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003747 252.0
PJD3_k127_61560_2 - - - - 0.000000000000000000000000000000000000000000000001052 185.0
PJD3_k127_61560_3 DsrE/DsrF-like family K09004 - - 0.0000000000000000000000000000000000000006005 153.0
PJD3_k127_6156522_0 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 398.0
PJD3_k127_6156522_1 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003082 271.0
PJD3_k127_6172988_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 9.701e-205 650.0
PJD3_k127_6172988_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003681 455.0
PJD3_k127_6172988_2 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000000002455 198.0
PJD3_k127_6172988_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.000000000000000000000000000000002827 131.0
PJD3_k127_6172988_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000229 91.0
PJD3_k127_6183922_0 Arylsulfotransferase Ig-like domain K01023 - 2.8.2.22 0.0000000000000000000000000000000000000000000000001753 198.0
PJD3_k127_6209508_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 4.069e-246 777.0
PJD3_k127_6209508_1 OmpA family - - - 2.996e-207 656.0
PJD3_k127_6209508_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000002017 239.0
PJD3_k127_6209508_3 PFAM Cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000001584 125.0
PJD3_k127_6209508_4 Peptidoglycan-binding protein, CsiV - - - 0.00000000000004273 83.0
PJD3_k127_6230469_0 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004963 449.0
PJD3_k127_6230469_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006520,GO:0006541,GO:0006542,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008773,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019538,GO:0019752,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0046394,GO:0070569,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008837 452.0
PJD3_k127_6230469_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 361.0
PJD3_k127_6230469_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007117 272.0
PJD3_k127_6231687_0 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001743 283.0
PJD3_k127_623711_0 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005869 284.0
PJD3_k127_623711_1 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.00000000000000000000000000000000000000000000000008394 182.0
PJD3_k127_623711_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000006067 122.0
PJD3_k127_6244564_0 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 8.627e-198 625.0
PJD3_k127_6244564_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000004439 226.0
PJD3_k127_6244564_2 Polyketide cyclase dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000257 173.0
PJD3_k127_6244564_3 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000000000000000000000000001879 132.0
PJD3_k127_6244564_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0030674,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042221,GO:0042802,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045203,GO:0045229,GO:0046677,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0060090,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000000000000000001096 93.0
PJD3_k127_6247985_0 PFAM Type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 586.0
PJD3_k127_6247985_1 General secretion pathway protein F K02455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 474.0
PJD3_k127_6247985_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000006971 196.0
PJD3_k127_6247985_3 TIGRFAM Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000001236 211.0
PJD3_k127_6247985_4 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000000001538 181.0
PJD3_k127_6249277_0 Flavoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006302 291.0
PJD3_k127_6249277_1 PFAM Cyclic nucleotide-binding - - - 0.000000000000000000000000000000000000000000000000002424 186.0
PJD3_k127_6249277_2 - - - - 0.0000000000000000000000000000000000000002504 154.0
PJD3_k127_6255098_0 PFAM Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001658 290.0
PJD3_k127_6255098_1 Putative rRNA methylase - - - 0.00000000000000000000000000000000000002956 151.0
PJD3_k127_6255098_2 MAPEG family - - - 0.000000000000000000002036 101.0
PJD3_k127_6255098_3 - - - - 0.000000000000000000003713 98.0
PJD3_k127_6255098_4 GGDEF domain - - - 0.0000001509 61.0
PJD3_k127_6267848_0 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004125 463.0
PJD3_k127_6267848_1 Squalene phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008494 373.0
PJD3_k127_6267848_2 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008289,GO:0008689,GO:0008757,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0042538,GO:0043167,GO:0043168,GO:0043431,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0061542,GO:0071704,GO:1901576,GO:1901611,GO:1901661,GO:1901663 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004425 353.0
PJD3_k127_6267848_3 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 353.0
PJD3_k127_6267848_4 short-chain dehydrogenase reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004531 311.0
PJD3_k127_6267848_5 Squalene/phytoene synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 309.0
PJD3_k127_6267848_6 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000005244 236.0
PJD3_k127_6267848_7 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000004347 198.0
PJD3_k127_6271003_0 Peptidase C39, bacteriocin processing K06992 - - 0.000000000000000000000000000000000000000000000000000000000004548 211.0
PJD3_k127_6271003_1 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000000001105 211.0
PJD3_k127_6271003_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000002799 129.0
PJD3_k127_6271003_3 ankyrin repeats - - - 0.00000000000001197 79.0
PJD3_k127_6301698_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 368.0
PJD3_k127_6301698_1 Universal stress protein family K06149 - - 0.000000000000000000000000000000001297 134.0
PJD3_k127_6301698_2 ABC transporter K02003 - - 0.00000000000000000000000000006466 117.0
PJD3_k127_6304737_0 COG0330 Membrane protease subunits, stomatin prohibitin homologs - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009075 441.0
PJD3_k127_6304737_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 422.0
PJD3_k127_6304737_2 Peptidase family M3 K01414 - 3.4.24.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 421.0
PJD3_k127_6304737_3 NfeD-like C-terminal, partner-binding K07340 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000002565 137.0
PJD3_k127_6306319_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 620.0
PJD3_k127_6306319_1 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302 - 1.3.1.76,2.1.1.107,4.99.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006608 405.0
PJD3_k127_6327401_0 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000001199 256.0
PJD3_k127_6327401_2 Protein of unknown function (DUF2797) - - - 0.000000000005037 67.0
PJD3_k127_6330139_0 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000755 295.0
PJD3_k127_6330139_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000003719 254.0
PJD3_k127_6330139_2 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000503 254.0
PJD3_k127_6330139_3 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000000000000005084 197.0
PJD3_k127_6331594_0 Copper binding proteins, plastocyanin/azurin family K00368 - 1.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001543 437.0
PJD3_k127_6331594_1 Multi-copper - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002605 251.0
PJD3_k127_6331594_2 cytochrome C, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004457 253.0
PJD3_k127_6331594_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000012 136.0
PJD3_k127_6348197_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1053.0
PJD3_k127_6348197_1 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000003154 226.0
PJD3_k127_6354611_0 DNA polymerase III, alpha subunit K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 505.0
PJD3_k127_6354611_1 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 336.0
PJD3_k127_6366191_0 Trypsin K04691,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0033554,GO:0035966,GO:0035967,GO:0042221,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0051788,GO:0070011,GO:0070887,GO:0071218,GO:0071310,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008003 351.0
PJD3_k127_6366191_1 NGG1p interacting factor 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 321.0
PJD3_k127_6366191_2 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.00000000000000000000000000000000000249 147.0
PJD3_k127_6366191_3 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000001859 123.0
PJD3_k127_6381085_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 399.0
PJD3_k127_6381085_1 PFAM ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008755 275.0
PJD3_k127_6381085_2 COG2755 Lysophospholipase L1 and related esterases K10804 GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016289,GO:0016290,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0047617,GO:0052689,GO:0071704,GO:0140096,GO:1901564 3.1.1.5 0.000000000000000000000000000000000000000000000000000000000002217 218.0
PJD3_k127_6403263_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 515.0
PJD3_k127_6403263_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 290.0
PJD3_k127_6403263_2 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000002814 137.0
PJD3_k127_6403263_3 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.0008684 44.0
PJD3_k127_6403842_0 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 407.0
PJD3_k127_6403842_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002241 370.0
PJD3_k127_6403842_2 Biotin and Thiamin Synthesis associated domain K01012,K16180 - 2.8.1.6,5.4.99.58 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 310.0
PJD3_k127_6403842_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035870,GO:0036220,GO:0036222,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004825 295.0
PJD3_k127_6403842_4 Competence protein - - - 0.00000000000000000000000000000000000000000000000002373 187.0
PJD3_k127_6403842_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000000000000000003082 145.0
PJD3_k127_6403842_6 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000000002276 100.0
PJD3_k127_6403842_8 - - - - 0.0000000000004018 73.0
PJD3_k127_6408719_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 9.872e-286 895.0
PJD3_k127_6408719_1 Cysteine-rich domain - - - 8.495e-219 687.0
PJD3_k127_6408719_11 - - - - 0.0007193 49.0
PJD3_k127_6408719_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007606 320.0
PJD3_k127_6408719_3 PFAM Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004143 265.0
PJD3_k127_6408719_4 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001288 256.0
PJD3_k127_6408719_5 gag-polyprotein putative aspartyl protease - - - 0.00000000000000000000000000000000001818 140.0
PJD3_k127_6408719_6 ECF sigma factor - - - 0.00000000000000000000000000000000005743 141.0
PJD3_k127_6408719_7 ankyrin repeat - - - 0.00000000000000004966 90.0
PJD3_k127_6408719_8 EF-hand, calcium binding motif - - - 0.000000000005082 74.0
PJD3_k127_6408719_9 Sel1-like repeats. K07126 - - 0.00000001109 63.0
PJD3_k127_6433646_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 2.285e-294 917.0
PJD3_k127_6433646_1 Pyridine nucleotide-disulphide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 1.562e-257 798.0
PJD3_k127_6433646_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007714 556.0
PJD3_k127_6433646_3 metal cluster binding K06940 - - 0.000000000000000000000000000000000000000000000006248 177.0
PJD3_k127_6433646_4 - - - - 0.000000000000000000000000000000000000000000000008578 187.0
PJD3_k127_6433646_5 Planctomycete cytochrome C - - - 0.0000000000000000000000000065 114.0
PJD3_k127_6433646_6 cytochrome - - - 0.00000000000000000002015 94.0
PJD3_k127_6433646_7 HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.00000000000000005641 86.0
PJD3_k127_6452556_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 1.022e-292 910.0
PJD3_k127_6452556_1 oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001241 246.0
PJD3_k127_6452556_2 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000006709 154.0
PJD3_k127_6452556_3 Tetratricopeptide repeat K02200 - - 0.0000000000000000000000001123 113.0
PJD3_k127_6464075_0 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000002079 234.0
PJD3_k127_6464075_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000002206 210.0
PJD3_k127_6464075_2 Aminoacyl-tRNA editing domain K19055 - - 0.00000000000000000000000000000000000000000000000001856 183.0
PJD3_k127_646566_0 glutamate--cysteine ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 459.0
PJD3_k127_646566_1 PFAM Succinylglutamate desuccinylase Aspartoacylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 392.0
PJD3_k127_6512534_0 Reverse transcriptase (RNA-dependent DNA polymerase) K00986 - 2.7.7.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 535.0
PJD3_k127_6512534_1 Inner membrane protein involved in colicin E2 resistance K06143 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 301.0
PJD3_k127_6512534_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000003724 230.0
PJD3_k127_6519805_0 Belongs to the dihydroorotate dehydrogenase family K17828 - 1.3.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003667 475.0
PJD3_k127_6519805_1 TIGRFAM conserved repeat domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 304.0
PJD3_k127_6533987_0 Histidine Phosphotransfer domain K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004167 404.0
PJD3_k127_6533987_1 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000004699 154.0
PJD3_k127_6540595_0 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 404.0
PJD3_k127_6540595_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 351.0
PJD3_k127_6540595_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000001698 193.0
PJD3_k127_6540595_3 Methyltransferase domain - - - 0.000000000000001018 87.0
PJD3_k127_6540595_4 Transporter - - - 0.000001858 51.0
PJD3_k127_654360_0 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016740,GO:0016744,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 287.0
PJD3_k127_654360_1 - - - - 0.000000000000000004195 91.0
PJD3_k127_654360_2 DsrC like protein K11179 - - 0.000000000000000422 83.0
PJD3_k127_654360_3 MotA TolQ ExbB proton channel family K02556 - - 0.000003097 58.0
PJD3_k127_654360_4 OmpA family K03640 - - 0.0004087 50.0
PJD3_k127_6547843_0 PFAM sigma-54 factor interaction domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000002883 209.0
PJD3_k127_6549229_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008775 540.0
PJD3_k127_6549229_1 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008286 397.0
PJD3_k127_6549229_2 COG0642 Signal transduction histidine kinase K07678 GO:0000155,GO:0000160,GO:0000302,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009636,GO:0009927,GO:0009987,GO:0010033,GO:0010035,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0035556,GO:0036211,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046677,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901700 2.7.13.3 0.0000000000000000000000000000003221 133.0
PJD3_k127_67106_0 AcrB/AcrD/AcrF family K07787 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 332.0
PJD3_k127_67106_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 324.0
PJD3_k127_671779_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 1.764e-262 818.0
PJD3_k127_671779_1 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000007467 95.0
PJD3_k127_671779_2 - - - - 0.000000000000001501 81.0
PJD3_k127_690083_0 Putative methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007373 479.0
PJD3_k127_690083_1 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008077 248.0
PJD3_k127_690083_2 MatE K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000002639 238.0
PJD3_k127_690083_3 Haemolysin-III related - - - 0.000000000000000000000000000000000000000000000000000000001595 208.0
PJD3_k127_690083_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000001389 186.0
PJD3_k127_690083_5 - - - - 0.0000000000000000000000000000000000000000008047 164.0
PJD3_k127_690100_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 4.774e-320 987.0
PJD3_k127_690100_1 PFAM Sulfate transporter antisigma-factor antagonist STAS K03321 - - 6.486e-230 721.0
PJD3_k127_690100_10 Protein required for attachment to host cells - - - 0.000000000000000000000000000000000005839 142.0
PJD3_k127_690100_11 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000001394 143.0
PJD3_k127_690100_12 Domain of unknown function (DUF4212) K14393 - - 0.000000000000000000000000000009833 120.0
PJD3_k127_690100_13 - - - - 0.000000000000000000000001559 104.0
PJD3_k127_690100_14 - - - - 0.000000000000003226 75.0
PJD3_k127_690100_15 SNARE associated Golgi protein - - - 0.0000000000008042 78.0
PJD3_k127_690100_2 Putative nucleotidyltransferase substrate binding domain K02342,K07182 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 479.0
PJD3_k127_690100_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 392.0
PJD3_k127_690100_4 epimerase, PhzC PhzF homolog - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000524 327.0
PJD3_k127_690100_5 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007362 325.0
PJD3_k127_690100_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007105 243.0
PJD3_k127_690100_7 Mate efflux family protein K03327 - - 0.000000000000000000000000000000000000000000000000006764 195.0
PJD3_k127_690100_8 Putative phosphatase (DUF442) - - - 0.0000000000000000000000000000000000000000000003401 174.0
PJD3_k127_690100_9 Uncharacterized protein family UPF0016 - - - 0.0000000000000000000000000000000000008878 140.0
PJD3_k127_69060_0 Histidine kinase K20971,K20974 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001227 275.0
PJD3_k127_69060_1 aminopeptidase - - - 0.000000000000000000000000003081 114.0
PJD3_k127_693708_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003127 420.0
PJD3_k127_693708_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 362.0
PJD3_k127_693708_2 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009312 331.0
PJD3_k127_693708_3 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 GO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 283.0
PJD3_k127_693708_4 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003784 269.0
PJD3_k127_696143_0 COG4206 Outer membrane cobalamin receptor protein K02014,K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001291 295.0
PJD3_k127_696143_1 RF-1 domain K15034 - - 0.00000000000000000000000000000000000000000001911 165.0
PJD3_k127_696143_2 Protein of unknown function (DUF3015) - - - 0.000000000000000000000000000000000000000008406 160.0
PJD3_k127_696143_3 Domain of unknown function (DUF4105) - - - 0.00000000000000000000000000000000002979 142.0
PJD3_k127_696143_4 Type 1 fimbriae regulatory protein K07357 - - 0.0000000000000000000002951 104.0
PJD3_k127_705926_0 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003652 549.0
PJD3_k127_705926_1 PFAM LppC K07121 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 449.0
PJD3_k127_705926_2 Molecular chaperone. Has ATPase activity K04079 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005058 359.0
PJD3_k127_705926_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 312.0
PJD3_k127_705926_4 Sugar fermentation stimulation protein K06206 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002287 256.0
PJD3_k127_705926_5 membrane transporter protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001444 250.0
PJD3_k127_705926_6 PFAM transport-associated - - - 0.0000000000000000000000000000000000000000907 159.0
PJD3_k127_705926_7 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000000000000001196 113.0
PJD3_k127_708722_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000002607 230.0
PJD3_k127_708722_1 organic phosphonate transport K02044 - - 0.0000000000000000000000000000000000000000000002175 178.0
PJD3_k127_708722_2 COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K00523 - 1.17.1.1 0.00000000000000000000000000000001645 129.0
PJD3_k127_708722_3 Protein of unknown function (DUF2845) - - - 0.00000000000004254 78.0
PJD3_k127_718435_0 Hydrogenase maturation protease - - - 0.000000000000000000000000000000000000000000000001471 177.0
PJD3_k127_718435_1 ATP synthase subunit D K02120 - - 0.0000000000000000000000000000000000000008819 153.0
PJD3_k127_718435_2 PFAM HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.000000000000000005203 89.0
PJD3_k127_719186_0 Peptidase C39, bacteriocin processing K06992 - - 0.0000000000000000000000000000000000000000000000000000000000672 213.0
PJD3_k127_719186_1 Cupin 2, conserved barrel domain protein K01654 - 2.5.1.56 0.00000000000000000000000000000000000000000001394 165.0
PJD3_k127_719186_2 Cysteine dioxygenase type I - - - 0.00000000001545 71.0
PJD3_k127_719933_0 Mycolic acid cyclopropane synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 436.0
PJD3_k127_719933_1 nuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000002723 232.0
PJD3_k127_719933_2 Belongs to the UPF0178 family K09768 - - 0.000000000000000000000000000000000000000000002702 166.0
PJD3_k127_742618_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1121.0
PJD3_k127_742618_1 Extracellular solute-binding protein - - - 9e-323 1002.0
PJD3_k127_742618_10 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0042802,GO:0043021,GO:0043022,GO:0043170,GO:0043335,GO:0043412,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0050896,GO:0051083,GO:0061077,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 426.0
PJD3_k127_742618_11 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000691 404.0
PJD3_k127_742618_12 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 399.0
PJD3_k127_742618_13 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 336.0
PJD3_k127_742618_14 Protein of unknown function (DUF455) K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005081 316.0
PJD3_k127_742618_15 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000195 260.0
PJD3_k127_742618_16 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000007597 251.0
PJD3_k127_742618_17 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000812 238.0
PJD3_k127_742618_18 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000005974 218.0
PJD3_k127_742618_19 - - - - 0.000000000000000000000000000000000000000000000964 171.0
PJD3_k127_742618_2 Belongs to the ABC transporter superfamily K02031,K02032 - - 5.485e-264 829.0
PJD3_k127_742618_20 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000000005692 135.0
PJD3_k127_742618_21 - - - - 0.0000000000001323 76.0
PJD3_k127_742618_22 - - - - 0.00000000001561 74.0
PJD3_k127_742618_23 - - - - 0.0000000001004 63.0
PJD3_k127_742618_3 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.18 5.608e-254 794.0
PJD3_k127_742618_4 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.003e-219 687.0
PJD3_k127_742618_5 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K03309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 589.0
PJD3_k127_742618_6 Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 552.0
PJD3_k127_742618_7 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007296 477.0
PJD3_k127_742618_8 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 429.0
PJD3_k127_742618_9 peptidylprolyl isomerase K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 443.0
PJD3_k127_754823_0 Peptidase family U32 C-terminal domain K08303 - - 1.24e-198 628.0
PJD3_k127_754823_1 DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA K05982 - 3.1.21.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 284.0
PJD3_k127_755242_0 oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 306.0
PJD3_k127_755242_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001292 243.0
PJD3_k127_755242_2 PFAM heat shock protein DnaJ - - - 0.0000000000000000000000000000000000000000000000002679 184.0
PJD3_k127_755242_3 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.000000000000000000000000000000000000000000000005021 173.0
PJD3_k127_755242_4 WLM domain K07043 - - 0.000000000000000000000000000000000000000000001107 174.0
PJD3_k127_755242_5 - - - - 0.0000000000000000000002072 101.0
PJD3_k127_76022_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 4.736e-202 638.0
PJD3_k127_76022_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004843 554.0
PJD3_k127_76022_2 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006509 524.0
PJD3_k127_76022_3 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 528.0
PJD3_k127_76022_4 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884 420.0
PJD3_k127_76022_5 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 336.0
PJD3_k127_76022_6 Could be involved in insertion of integral membrane proteins into the membrane K08998 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031226,GO:0032977,GO:0033036,GO:0034613,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0090150 - 0.00000000000000000000000000001327 119.0
PJD3_k127_76022_7 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904 3.1.26.5 0.00000000000000000000008579 102.0
PJD3_k127_76022_8 In Escherichia coli transcription of this gene is enhanced by polyamines K02914 - - 0.000000000000001444 77.0
PJD3_k127_763491_0 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000491 458.0
PJD3_k127_763491_1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 316.0
PJD3_k127_763491_2 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000006059 220.0
PJD3_k127_763491_3 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000000001697 89.0
PJD3_k127_771695_0 AcrB/AcrD/AcrF family K07787 - - 0.0 1037.0
PJD3_k127_771695_1 Predicted membrane protein (DUF2231) - - - 0.000000000000000000000000000000001703 131.0
PJD3_k127_77307_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000743 569.0
PJD3_k127_77307_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009628,GO:0009987,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009007 377.0
PJD3_k127_77307_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009903 344.0
PJD3_k127_77307_4 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000001417 109.0
PJD3_k127_775913_0 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 512.0
PJD3_k127_775913_1 Multicopper oxidase - - - 0.0000000000000000000000000006571 126.0
PJD3_k127_775913_2 - - - - 0.000000000000000005764 85.0
PJD3_k127_775913_3 SPW repeat - - - 0.00000000000000002221 87.0
PJD3_k127_775913_4 Chaperone - - - 0.0000000000144 67.0
PJD3_k127_775913_5 Multicopper oxidase - - - 0.000001485 52.0
PJD3_k127_776932_0 signal transduction histidine kinase K07637 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005211 284.0
PJD3_k127_776932_1 family member 17 K10454 GO:0000151,GO:0003674,GO:0003779,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008092,GO:0008150,GO:0009987,GO:0014069,GO:0015629,GO:0016043,GO:0019904,GO:0030029,GO:0030036,GO:0030425,GO:0031208,GO:0031461,GO:0031463,GO:0032279,GO:0032501,GO:0032502,GO:0032838,GO:0032839,GO:0032947,GO:0032991,GO:0036477,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044297,GO:0044424,GO:0044444,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045202,GO:0048513,GO:0048731,GO:0048856,GO:0051015,GO:0060322,GO:0071840,GO:0097447,GO:0097458,GO:0098794,GO:0098984,GO:0099568,GO:0099572,GO:0120025,GO:0120038,GO:0120111,GO:1902494,GO:1990234 - 0.00000000000001352 83.0
PJD3_k127_794134_0 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 445.0
PJD3_k127_80733_0 Chorismate synthase K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 599.0
PJD3_k127_80733_1 major facilitator superfamily K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006917 460.0
PJD3_k127_80733_2 P-aminobenzoate N-oxygenase AurF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005054 264.0
PJD3_k127_80733_3 Acid phosphatase homologues - - - 0.000000000004475 73.0
PJD3_k127_81116_0 Circularly permuted ATP-grasp type 2 - - - 4.275e-244 760.0
PJD3_k127_81116_1 May be involved in recombinational repair of damaged DNA K03631 GO:0000724,GO:0000725,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008511 487.0
PJD3_k127_81116_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 361.0
PJD3_k127_81116_3 A predicted alpha-helical domain with a conserved ER motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 344.0
PJD3_k127_81116_4 PFAM 20S proteasome, A and B subunits K07395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 295.0
PJD3_k127_81116_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003339 268.0
PJD3_k127_81116_6 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family K02503 - - 0.00000000000000000000000000000000000000000000000004759 181.0
PJD3_k127_81116_7 - - - - 0.000000000000000000000000000000000000001655 153.0
PJD3_k127_81116_8 Transcription factor zinc-finger - - - 0.0000000000000000000000000000000000004231 143.0
PJD3_k127_81116_9 Ferric uptake regulator family K03711 - - 0.0000000000000000000000001351 106.0
PJD3_k127_81548_0 cation transport ATPase K01533 - 3.6.3.4 8.769e-245 768.0
PJD3_k127_81548_1 TIGRFAM cytochrome c oxidase accessory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 467.0
PJD3_k127_81548_2 FixH - - - 0.00000000000000000000000000000000007635 139.0
PJD3_k127_831409_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1129.0
PJD3_k127_831409_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1060.0
PJD3_k127_831409_10 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000000000000000000000000000000000000000000000000003315 202.0
PJD3_k127_831409_11 High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway K06203 - - 0.000000000000000000000000000000000000000000000000000004519 199.0
PJD3_k127_831409_12 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000188 170.0
PJD3_k127_831409_13 PFAM Formylglycine-generating sulfatase enzyme K06196,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000008088 138.0
PJD3_k127_831409_14 - - - - 0.0000000000005399 77.0
PJD3_k127_831409_2 PFAM carbohydrate kinase K00854 - 2.7.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 443.0
PJD3_k127_831409_3 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006086 434.0
PJD3_k127_831409_4 PFAM Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009222 342.0
PJD3_k127_831409_5 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 334.0
PJD3_k127_831409_6 PFAM Formylglycine-generating sulfatase enzyme K18912 - 1.14.99.50 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002938 287.0
PJD3_k127_831409_7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006153 263.0
PJD3_k127_831409_8 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression K06204 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000006966 226.0
PJD3_k127_831409_9 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000001806 219.0
PJD3_k127_845593_0 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 550.0
PJD3_k127_845593_1 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 450.0
PJD3_k127_845593_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 417.0
PJD3_k127_845593_3 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 371.0
PJD3_k127_845593_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 305.0
PJD3_k127_848823_0 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000001538 207.0
PJD3_k127_848823_1 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000001276 188.0
PJD3_k127_848823_2 Protein of unknown function (DUF3106) - - - 0.000000000000000000001828 100.0
PJD3_k127_848823_3 - - - - 0.000005992 53.0
PJD3_k127_854506_0 PFAM ATP-binding region ATPase domain protein K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003447 375.0
PJD3_k127_854506_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008776,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016741,GO:0016742,GO:0016772,GO:0016774,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 356.0
PJD3_k127_854506_2 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 352.0
PJD3_k127_854506_3 response regulator K07666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001242 245.0
PJD3_k127_907127_0 - - - - 0.0000000000000000000000000000006693 135.0
PJD3_k127_907127_1 PFAM blue (type 1) copper domain protein K00728,K01179,K13669 - 2.4.1.109,3.2.1.4 0.000000000000001099 81.0
PJD3_k127_908113_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 4.578e-209 660.0
PJD3_k127_908113_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 1.58e-196 622.0
PJD3_k127_908113_2 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.000000000000000000000000000000000000000002063 163.0
PJD3_k127_908113_3 Redoxin domain protein - - - 0.000000000000000000000000000000000000009111 151.0
PJD3_k127_912522_0 PFAM ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 414.0
PJD3_k127_912522_1 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 367.0
PJD3_k127_912522_2 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 322.0
PJD3_k127_912522_3 calcium- and calmodulin-responsive adenylate cyclase activity K01179 - 3.2.1.4 0.00000001123 64.0
PJD3_k127_916444_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 320.0
PJD3_k127_916444_1 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 310.0
PJD3_k127_916444_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000001642 116.0
PJD3_k127_920499_0 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 538.0
PJD3_k127_920499_1 Uncharacterised protein family (UPF0014) K02069 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002873 265.0
PJD3_k127_920499_2 GDSL-like Lipase/Acylhydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000003454 220.0
PJD3_k127_920499_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000002608 158.0
PJD3_k127_920499_4 Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second- messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a - - - 0.0000000000000000000000000000001497 127.0
PJD3_k127_920499_5 Belongs to the ArsC family - - - 0.00000000000000000008351 90.0
PJD3_k127_926890_0 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000001044 234.0
PJD3_k127_932572_0 Adenylate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 538.0
PJD3_k127_932572_1 signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000002352 219.0
PJD3_k127_932572_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000009768 164.0
PJD3_k127_936229_0 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 314.0
PJD3_k127_936229_1 - - - - 0.00000000000000000000000000000000000005788 146.0
PJD3_k127_936229_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000009514 101.0
PJD3_k127_936229_3 MMPL family K07003 - - 0.0000000000000002168 81.0
PJD3_k127_94530_0 Histidine kinase K07642 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007178 342.0
PJD3_k127_94530_1 Transcriptional regulatory protein, C terminal K07664,K18144 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043254,GO:0043565,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2001023,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 290.0
PJD3_k127_94530_2 Histidine Phosphotransfer domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002688 274.0
PJD3_k127_94530_3 Protein of unknown function (DUF2892) - - - 0.0005536 46.0
PJD3_k127_962279_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 625.0
PJD3_k127_962279_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 515.0
PJD3_k127_962279_2 Yqey-like protein K09117 - - 0.0000000002618 61.0
PJD3_k127_962696_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001884 480.0
PJD3_k127_962696_1 HD domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 430.0
PJD3_k127_962696_2 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000002636 192.0
PJD3_k127_980649_0 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001144 277.0
PJD3_k127_980649_1 HDOD domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000003743 229.0
PJD3_k127_980649_2 DoxX K15977 - - 0.00000000000000000000000000000000000000003486 157.0
PJD3_k127_980649_3 Transcriptional regulator, MarR family - - - 0.00000000000000000000000000000000000000005082 155.0
PJD3_k127_980649_4 - - - - 0.000000000000000000000005894 109.0
PJD3_k127_980649_5 Short C-terminal domain K08982 - - 0.0000000002149 65.0
PJD3_k127_990734_0 Prolyl oligopeptidase family K06889 - - 0.00000000000000000000000000000000000000000000000000000000000002652 224.0
PJD3_k127_990734_1 Histidine Phosphotransfer domain - - - 0.0000000000000000000000000001082 126.0
PJD3_k127_990734_2 Domain of unknown function (DUF4105) - - - 0.0000000001456 68.0
PJD3_k127_999365_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.306e-213 670.0
PJD3_k127_999365_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034337,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000002872 174.0
PJD3_k127_999365_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000006312 131.0