logo

Overview

ID MAG02930
Name PJD3_bin.2
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Burkholderiaceae
Genus Quisquiliibacterium
Species
Assembly information
Completeness (%) 88.44
Contamination (%) 2.71
GC content (%) 68.0
N50 (bp) 8,009
Genome size (bp) 3,094,181

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3226

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_10028_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 2.279e-281 886.0
PJD3_k127_10028_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 481.0
PJD3_k127_1007200_0 FAD dependent oxidoreductase - - - 0.0 1050.0
PJD3_k127_1007200_1 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 6.3e-239 747.0
PJD3_k127_1007200_10 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 336.0
PJD3_k127_1007200_11 N-terminal domain of oxidoreductase K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002884 325.0
PJD3_k127_1007200_12 Belongs to the GcvT family K06980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007277 262.0
PJD3_k127_1007200_13 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000003468 240.0
PJD3_k127_1007200_14 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000002585 246.0
PJD3_k127_1007200_15 dna polymerase iii K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000001177 238.0
PJD3_k127_1007200_16 Disulfide bond formation protein DsbB K03611 - - 0.000000000000000000000000000000000000000000000000001704 186.0
PJD3_k127_1007200_17 Alpha beta hydrolase K01048 - 3.1.1.5 0.0000000000000000000000000000000000000000000000007202 198.0
PJD3_k127_1007200_18 PFAM Ankyrin K06867 - - 0.000000000000000000000000000000000000000000004935 175.0
PJD3_k127_1007200_19 Uncharacterised protein family (UPF0227) K07000 - - 0.0000000000000000000000000000001219 143.0
PJD3_k127_1007200_2 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 557.0
PJD3_k127_1007200_20 PilZ domain K02676 - - 0.00000000000000000000000000556 126.0
PJD3_k127_1007200_3 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 398.0
PJD3_k127_1007200_4 Alpha beta hydrolase K01066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005403 364.0
PJD3_k127_1007200_5 Class II aldolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009133 357.0
PJD3_k127_1007200_6 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 355.0
PJD3_k127_1007200_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 357.0
PJD3_k127_1007200_8 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005651 347.0
PJD3_k127_1007200_9 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 338.0
PJD3_k127_1024824_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001999 602.0
PJD3_k127_1024824_1 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 569.0
PJD3_k127_1024824_2 Adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000003286 211.0
PJD3_k127_1024824_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000002989 187.0
PJD3_k127_1029527_0 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 1.741e-257 814.0
PJD3_k127_1029527_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 5.364e-211 676.0
PJD3_k127_1029527_10 Type II transport protein GspH K08084,K08085 - - 0.00000000000000000000000000004675 124.0
PJD3_k127_1029527_11 Prokaryotic N-terminal methylation motif K02680 - - 0.0000000000000000000000000001503 123.0
PJD3_k127_1029527_12 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000001385 103.0
PJD3_k127_1029527_2 PFAM Thiamine pyrophosphate K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 608.0
PJD3_k127_1029527_3 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 515.0
PJD3_k127_1029527_4 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 449.0
PJD3_k127_1029527_5 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 403.0
PJD3_k127_1029527_6 Pilus assembly protein PilX - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006438 264.0
PJD3_k127_1029527_7 type IV pilus modification protein PilV - - - 0.000000000000000000000000000000000000000000000000000000000006589 223.0
PJD3_k127_1029527_8 - - - - 0.000000000000000000000000000000000000000000000000333 189.0
PJD3_k127_1029527_9 Sulfate permease family K03321 - - 0.0000000000000000000000000000000004925 135.0
PJD3_k127_1047968_0 Ethylbenzene dehydrogenase - - - 3.268e-225 704.0
PJD3_k127_1047968_1 response regulator K07714 - - 4.921e-213 672.0
PJD3_k127_1047968_10 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000176 61.0
PJD3_k127_1047968_2 Double sensory domain of two-component sensor kinase - - - 2.848e-207 679.0
PJD3_k127_1047968_3 Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 540.0
PJD3_k127_1047968_4 Ammonia monooxygenase K07120 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001021 311.0
PJD3_k127_1047968_5 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002277 241.0
PJD3_k127_1047968_6 Asparaginase, N-terminal K01424 - 3.5.1.1 0.0000000000000000000000000000000000000000000000000000000001243 209.0
PJD3_k127_1047968_7 MOSC domain - - - 0.0000000000000002287 80.0
PJD3_k127_1047968_8 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.00000000000002628 76.0
PJD3_k127_1047968_9 AAA domain K07133 - - 0.000000000001412 74.0
PJD3_k127_1056958_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 9.057e-226 708.0
PJD3_k127_1056958_1 COG0457 FOG TPR repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 451.0
PJD3_k127_1056958_2 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 429.0
PJD3_k127_1056958_3 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 415.0
PJD3_k127_1056958_4 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000006006 230.0
PJD3_k127_1064005_0 Aldehyde dehydrogenase family K00128 - 1.2.1.3 7.724e-208 662.0
PJD3_k127_1064005_1 N-methylhydantoinase A acetone carboxylase, beta subunit K01473 - 3.5.2.14 0.000000000000000000000000000004911 125.0
PJD3_k127_1066219_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0 1671.0
PJD3_k127_1066219_1 Phosphate acetyl butaryl transferase K00029 - 1.1.1.40 0.0 1154.0
PJD3_k127_1066219_2 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 593.0
PJD3_k127_1066219_3 Dehydrogenase K00285 - 1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 499.0
PJD3_k127_1066219_4 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 304.0
PJD3_k127_1066219_5 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000000000000000000000006711 161.0
PJD3_k127_1066219_6 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000004201 130.0
PJD3_k127_1066219_7 Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 K15461 - 2.1.1.61 0.0000000000000000000000001716 109.0
PJD3_k127_1066219_8 PFAM Hydantoinase oxoprolinase K01469 - 3.5.2.9 0.0002586 47.0
PJD3_k127_1070487_0 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 2.5e-241 775.0
PJD3_k127_1070487_1 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 4.732e-217 678.0
PJD3_k127_1070487_2 PFAM Acyl-CoA dehydrogenase K00249 - 1.3.8.7 4.994e-213 666.0
PJD3_k127_1070487_3 SMART phosphoesterase PHP domain protein K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 351.0
PJD3_k127_1070487_4 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 344.0
PJD3_k127_1070487_5 Belongs to the SUA5 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007123 265.0
PJD3_k127_1070487_6 PFAM Phosphoglycerate mutase - - - 0.00000000000000000000000000000000000000000000000000000000000001068 222.0
PJD3_k127_1070487_7 Putative diguanylate phosphodiesterase K13243 - 3.1.4.52 0.0000000000000001278 83.0
PJD3_k127_1070487_8 CoA-binding domain protein K01895,K09181 - 6.2.1.1 0.0000000157 58.0
PJD3_k127_108041_0 Cysteine-rich domain - - - 1.005e-276 856.0
PJD3_k127_108041_1 Nitrite and sulphite reductase 4Fe-4S domain K11181 - 1.8.99.5 3.38e-219 686.0
PJD3_k127_108041_2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 7.367e-201 631.0
PJD3_k127_108041_3 PFAM Nitrate reductase gamma subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 346.0
PJD3_k127_108041_4 DsrE/DsrF-like family K07235 - - 0.00000000000000000000000000000000000000000000000000000000001421 208.0
PJD3_k127_108041_5 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000000000000001443 196.0
PJD3_k127_108041_6 DsrE/DsrF-like family K07236 - - 0.0000000000000000000000000000000000000000000000000000007451 194.0
PJD3_k127_108041_7 sulfite reductase, dissimilatory-type alpha subunit K11180 - 1.8.99.5 0.00000000000000000000000000000006501 124.0
PJD3_k127_108041_8 DsrH like protein K07237 - - 0.000000000000000000000000000007249 121.0
PJD3_k127_1080843_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 7.197e-194 609.0
PJD3_k127_1080843_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009304 495.0
PJD3_k127_1080843_10 - - - - 0.000000000000008867 78.0
PJD3_k127_1080843_11 Helix-turn-helix domain - - - 0.0004677 50.0
PJD3_k127_1080843_2 oxidoreductase FAD NAD(P)-binding domain protein K00523,K18248 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009115 481.0
PJD3_k127_1080843_3 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 415.0
PJD3_k127_1080843_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006621 411.0
PJD3_k127_1080843_5 abc transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005232 366.0
PJD3_k127_1080843_6 Nad-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000316 297.0
PJD3_k127_1080843_7 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000329 212.0
PJD3_k127_1080843_8 Cytochrome c K08738 - - 0.0000000000000000000000000000005324 124.0
PJD3_k127_1080843_9 Protein of unknown function (DUF4242) - - - 0.000000000000003831 83.0
PJD3_k127_1082292_0 ABC transporter K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 606.0
PJD3_k127_1082292_1 KR domain K13775 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 379.0
PJD3_k127_1082292_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 340.0
PJD3_k127_1082292_3 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 315.0
PJD3_k127_1082292_4 Glutamine amidotransferases class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003326 299.0
PJD3_k127_1082292_5 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000001824 217.0
PJD3_k127_1082292_6 COG2755 Lysophospholipase L1 and related esterases - - - 0.00000000000000000000000000000000000000000000000000753 201.0
PJD3_k127_1082292_7 Thioesterase superfamily protein K10806 - - 0.0000000000000000000000000000000000000000000000003175 179.0
PJD3_k127_1082292_8 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.0000000000000000000000000000208 122.0
PJD3_k127_1082292_9 Protein of unknown function (DUF1778) - - - 0.0000000000001088 83.0
PJD3_k127_1091254_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003015 617.0
PJD3_k127_1091254_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 590.0
PJD3_k127_1091254_10 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000002394 171.0
PJD3_k127_1091254_11 Rhodanese Homology Domain - - - 0.000000000000000000000000000000004478 132.0
PJD3_k127_1091254_12 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.00000000000000000000000000000006682 133.0
PJD3_k127_1091254_13 Bacterial SH3 domain - - - 0.000000000000000000000000002314 123.0
PJD3_k127_1091254_14 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.0000000000000000000398 90.0
PJD3_k127_1091254_15 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000001575 63.0
PJD3_k127_1091254_16 Cysteine-rich CWC - - - 0.0000006137 57.0
PJD3_k127_1091254_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 462.0
PJD3_k127_1091254_3 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007587 383.0
PJD3_k127_1091254_4 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004895 349.0
PJD3_k127_1091254_5 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 334.0
PJD3_k127_1091254_6 PFAM regulatory protein TetR K05501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001437 265.0
PJD3_k127_1091254_7 Pyrimidine 5''-nucleotidase K07025 - - 0.00000000000000000000000000000000000000000000000000000007731 203.0
PJD3_k127_1091254_8 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000000009968 198.0
PJD3_k127_1091254_9 Redoxin - - - 0.00000000000000000000000000000000000000000000000008018 185.0
PJD3_k127_1093902_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 1.826e-291 900.0
PJD3_k127_1093902_1 ABC transporter K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 353.0
PJD3_k127_1093902_2 Asp/Glu/Hydantoin racemase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005126 330.0
PJD3_k127_1093902_3 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 325.0
PJD3_k127_1093902_4 PFAM Enoyl-CoA hydratase isomerase K13766,K15312 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 311.0
PJD3_k127_1093902_5 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007218 298.0
PJD3_k127_1093902_6 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 291.0
PJD3_k127_1093902_7 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005605 268.0
PJD3_k127_1093902_8 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000004427 198.0
PJD3_k127_1093902_9 YsiA-like protein, C-terminal region - - - 0.00000000000000000000000000000000000000000000000001213 193.0
PJD3_k127_1122436_0 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 361.0
PJD3_k127_1122436_1 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002172 260.0
PJD3_k127_1122436_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000006074 252.0
PJD3_k127_1122436_3 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000001682 86.0
PJD3_k127_1122968_0 Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family K01428 - 3.5.1.5 4.753e-315 971.0
PJD3_k127_1122968_1 phosphorelay signal transduction system K12132 - 2.7.11.1 5.97e-225 712.0
PJD3_k127_1122968_10 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03188 - - 0.00000000000000000000000000000000000000000000000003128 186.0
PJD3_k127_1122968_11 Belongs to the urease beta subunit family K01429 - 3.5.1.5 0.000000000000000000000000000000000000000000008486 166.0
PJD3_k127_1122968_12 Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly K03187 - - 0.00000000000000000000000000000000000002927 151.0
PJD3_k127_1122968_13 Protein of unknown function (DUF4242) - - - 0.00000000000000000000000000000000000009977 143.0
PJD3_k127_1122968_14 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000001861 124.0
PJD3_k127_1122968_2 protein conserved in bacteria K07793 - - 1.604e-206 661.0
PJD3_k127_1122968_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008065 527.0
PJD3_k127_1122968_4 Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG K03189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 333.0
PJD3_k127_1122968_5 ABC transporter K11963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006686 304.0
PJD3_k127_1122968_6 Taurine catabolism dioxygenase TauD, TfdA family K03119,K22303 - 1.14.11.17 0.00000000000000000000000000000000000000000000000000000000000000003921 233.0
PJD3_k127_1122968_7 Required for maturation of urease via the functional incorporation of the urease nickel metallocenter K03190 - - 0.00000000000000000000000000000000000000000000000000000000000001356 239.0
PJD3_k127_1122968_8 Belongs to the urease gamma subunit family K01430 - 3.5.1.5 0.0000000000000000000000000000000000000000000000000006237 190.0
PJD3_k127_1122968_9 urea ABC transporter, ATP-binding protein K11962 - - 0.0000000000000000000000000000000000000000000000000006657 185.0
PJD3_k127_1137657_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 1530.0
PJD3_k127_1145859_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 0.0 1280.0
PJD3_k127_1145859_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078 557.0
PJD3_k127_1145859_2 COG0437 Fe-S-cluster-containing hydrogenase components 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 363.0
PJD3_k127_1145859_3 Belongs to the heme-copper respiratory oxidase family - - - 0.000000000000000000000000000000000000000000000000001625 198.0
PJD3_k127_1145859_4 DMSO reductase anchor subunit (DmsC) K18363 - - 0.00000000000000000000000000000000000000000000000638 184.0
PJD3_k127_1145859_5 Thioesterase - - - 0.000000000000000000000000000000000000000000002288 168.0
PJD3_k127_1145859_6 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000001903 153.0
PJD3_k127_1145859_7 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000117 106.0
PJD3_k127_1145859_8 transcriptional regulator - - - 0.000000000000008306 76.0
PJD3_k127_1145859_9 Acetyltransferase (GNAT) family - - - 0.00002639 50.0
PJD3_k127_1164678_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 437.0
PJD3_k127_1164678_1 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000009835 140.0
PJD3_k127_12054_0 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 444.0
PJD3_k127_12054_1 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000002864 226.0
PJD3_k127_12054_2 - - - - 0.00000000000000000000000000003396 119.0
PJD3_k127_1210505_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009801 563.0
PJD3_k127_1210505_1 Belongs to the aldehyde dehydrogenase family K00128 GO:0003674,GO:0003824,GO:0004029,GO:0004030,GO:0006725,GO:0008150,GO:0008152,GO:0009058,GO:0009698,GO:0009699,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0019438,GO:0019748,GO:0044237,GO:0044249,GO:0044550,GO:0050269,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576 1.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000004904 237.0
PJD3_k127_1210505_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000003181 223.0
PJD3_k127_1240865_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 378.0
PJD3_k127_1240865_1 Major facilitator superfamily K07552,K18552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 295.0
PJD3_k127_1240865_2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006595 271.0
PJD3_k127_1258848_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 6.951e-225 707.0
PJD3_k127_129538_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 605.0
PJD3_k127_129538_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00245 - 1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 405.0
PJD3_k127_129538_2 Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane K00247 - - 0.0000000000000000000000000000005722 130.0
PJD3_k127_129538_3 Fumarate reductase subunit C K00246 - - 0.0000000000000000000000000002708 120.0
PJD3_k127_1311839_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 520.0
PJD3_k127_1311839_1 twitching motility protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005699 365.0
PJD3_k127_1311839_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000687 270.0
PJD3_k127_1311839_3 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000006964 117.0
PJD3_k127_1317829_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 2.346e-233 729.0
PJD3_k127_1317829_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 343.0
PJD3_k127_1317829_2 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001085 280.0
PJD3_k127_1317829_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000007177 178.0
PJD3_k127_1317829_4 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.0000000001881 62.0
PJD3_k127_1320214_0 Ftsk_gamma K03466 - - 4.411e-309 966.0
PJD3_k127_1320214_1 Transcriptional regulator K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005429 344.0
PJD3_k127_1320214_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000564 271.0
PJD3_k127_1320611_0 COG1593 TRAP-type C4-dicarboxylate transport system large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 469.0
PJD3_k127_1320611_1 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001126 277.0
PJD3_k127_1330774_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 474.0
PJD3_k127_1330774_1 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00184 - - 0.0000000000000000000000000000000000002183 147.0
PJD3_k127_1330774_2 - - - - 0.00000000000000000000000244 107.0
PJD3_k127_1331187_0 Belongs to the radical SAM superfamily. RlmN family K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 506.0
PJD3_k127_1331187_1 Carboxylesterase K06999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006407 258.0
PJD3_k127_1331187_2 - - - - 0.000000000000000000000000001365 113.0
PJD3_k127_1339315_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 389.0
PJD3_k127_1339315_1 Pfam SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 332.0
PJD3_k127_1339315_2 Two-component sensor kinase N-terminal K07649 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 318.0
PJD3_k127_1339315_3 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 293.0
PJD3_k127_1339315_4 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006331 261.0
PJD3_k127_1339937_0 Dihydrodipicolinate synthetase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 450.0
PJD3_k127_1339937_1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K01856 - 5.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 345.0
PJD3_k127_1339937_2 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000409 284.0
PJD3_k127_1350559_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1110.0
PJD3_k127_1350559_1 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 542.0
PJD3_k127_1350559_10 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000001503 80.0
PJD3_k127_1350559_2 PFAM aminotransferase, class I and II K14267 - 2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 495.0
PJD3_k127_1350559_3 Type II/IV secretion system protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 462.0
PJD3_k127_1350559_4 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 452.0
PJD3_k127_1350559_5 PFAM ABC transporter K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 334.0
PJD3_k127_1350559_6 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 312.0
PJD3_k127_1350559_7 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000004884 219.0
PJD3_k127_1350559_8 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.00000000000000000000000000000000000000000002534 179.0
PJD3_k127_1350559_9 Belongs to the ArsC family - - - 0.00000000000000000000000000000009131 137.0
PJD3_k127_1364971_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 531.0
PJD3_k127_1364971_1 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 387.0
PJD3_k127_1364971_2 ATPases associated with a variety of cellular activities K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 357.0
PJD3_k127_1364971_3 ABC transporter permease K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001783 353.0
PJD3_k127_1364971_4 toluene tolerance K07323 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001668 247.0
PJD3_k127_1364971_5 VacJ family lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000001137 234.0
PJD3_k127_1364971_6 PFAM Mammalian cell entry related domain protein K02067 - - 0.0000000000000000000000000000000000000000000000000000000000001079 216.0
PJD3_k127_1364971_7 PFAM Sulfate transporter antisigma-factor antagonist STAS K07122 - - 0.0002413 52.0
PJD3_k127_136539_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 398.0
PJD3_k127_136539_1 3-beta hydroxysteroid dehydrogenase/isomerase family K18981 - 1.1.1.203 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 299.0
PJD3_k127_136539_2 PFAM SMP-30 Gluconolaconase LRE domain protein K01053,K14274 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005851 276.0
PJD3_k127_136539_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000003222 168.0
PJD3_k127_136539_4 Glyoxalase bleomycin resistance protein dioxygenase K08234 - - 0.00000000000000000001786 91.0
PJD3_k127_1367957_0 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007391 565.0
PJD3_k127_1367957_1 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005779 311.0
PJD3_k127_1367957_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009681 267.0
PJD3_k127_1367957_3 PFAM AMMECR1 domain protein - - - 0.0000000000000000000000000000000000000000000000000002793 195.0
PJD3_k127_1367957_4 Glutathione S-transferase, C-terminal domain - - - 0.000000000000001522 79.0
PJD3_k127_1367957_5 Bacterial extracellular solute-binding protein - - - 0.00000001717 66.0
PJD3_k127_1369056_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 576.0
PJD3_k127_1369056_1 Protein of unknown function (DUF2889) - - - 0.000000000000000000000000000000000000000000000000000005125 196.0
PJD3_k127_1369056_2 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000001852 173.0
PJD3_k127_1369056_3 Belongs to the CinA family K03743 - 3.5.1.42 0.000000000000000000000000000000000000002257 160.0
PJD3_k127_1369056_4 Modulates RecA activity K03565 - - 0.0000000000000000000000008912 116.0
PJD3_k127_1369056_5 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000001694 90.0
PJD3_k127_1369056_6 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000004837 83.0
PJD3_k127_1378050_0 Histidine kinase - - - 7.061e-231 749.0
PJD3_k127_1378050_1 COG0569 K transport systems, NAD-binding component K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 588.0
PJD3_k127_1378050_10 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000004399 192.0
PJD3_k127_1378050_11 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000007694 134.0
PJD3_k127_1378050_12 Protein of unknown function (DUF3567) - - - 0.00000000000000000000000001856 112.0
PJD3_k127_1378050_14 - - - - 0.0003504 44.0
PJD3_k127_1378050_2 Putative Na+/H+ antiporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 544.0
PJD3_k127_1378050_3 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005975 538.0
PJD3_k127_1378050_4 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000941 453.0
PJD3_k127_1378050_5 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 395.0
PJD3_k127_1378050_6 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009802 345.0
PJD3_k127_1378050_7 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 334.0
PJD3_k127_1378050_8 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 297.0
PJD3_k127_1378050_9 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000005459 229.0
PJD3_k127_1394240_0 Pfam:DUF1446 - - - 8.141e-236 735.0
PJD3_k127_1394240_1 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009645 321.0
PJD3_k127_1394240_2 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008754 295.0
PJD3_k127_1394240_3 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000001607 177.0
PJD3_k127_1394240_4 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.0000000000000000000000000000000000000000000122 167.0
PJD3_k127_1394240_5 Domain of unknown function (DUF4387) - - - 0.00000000000000000000000000000000000000000001716 171.0
PJD3_k127_1397815_0 Circularly permuted ATP-grasp type 2 - - - 1.615e-225 708.0
PJD3_k127_1397815_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 385.0
PJD3_k127_1397815_2 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000002729 224.0
PJD3_k127_1397815_3 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000302 152.0
PJD3_k127_1397815_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.000000000000000000000000000643 119.0
PJD3_k127_1397815_5 A predicted alpha-helical domain with a conserved ER motif. - - - 0.000004906 59.0
PJD3_k127_1397927_0 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.4 9.012e-266 833.0
PJD3_k127_1397927_1 HMGL-like K01640 GO:0000287,GO:0003674,GO:0003824,GO:0004419,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006551,GO:0006552,GO:0006605,GO:0006625,GO:0006629,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016054,GO:0016829,GO:0016830,GO:0016833,GO:0017144,GO:0019752,GO:0022607,GO:0030145,GO:0031907,GO:0031974,GO:0033036,GO:0033365,GO:0034613,GO:0042579,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0046950,GO:0046951,GO:0046983,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902224 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 425.0
PJD3_k127_1397927_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K12972 - 1.1.1.79,1.1.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001234 287.0
PJD3_k127_1397927_3 LysE type translocator - - - 0.00000000000000000000000000000000000000001507 162.0
PJD3_k127_1397927_4 - - - - 0.0000000000001107 79.0
PJD3_k127_1397927_5 Metallo-beta-lactamase superfamily - - - 0.00000000016 64.0
PJD3_k127_1397927_6 Protein of unknown function (DUF1289) K06938 - - 0.0000000002135 68.0
PJD3_k127_1397927_7 enoyl-CoA hydratase K13766 - 4.2.1.18 0.000000002574 58.0
PJD3_k127_1414208_0 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 4.654e-269 841.0
PJD3_k127_1414208_1 Amidohydrolase family K15358 - 3.5.2.18 5.38e-211 661.0
PJD3_k127_1414208_2 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 5.881e-202 636.0
PJD3_k127_1414208_3 Extracellular liganD-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 608.0
PJD3_k127_1414208_4 abc transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 338.0
PJD3_k127_1414208_5 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 309.0
PJD3_k127_1414208_6 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005467 335.0
PJD3_k127_1414208_7 LUD domain K00782 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004016 268.0
PJD3_k127_1414208_8 PFAM regulatory protein TetR - - - 0.0000000000000000000000000000000000000000000000000007967 205.0
PJD3_k127_1414208_9 COG2010 Cytochrome c, mono- and diheme variants - - - 0.000000000000000000000000000494 121.0
PJD3_k127_1414913_0 COG0044 Dihydroorotase and related cyclic amidohydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 590.0
PJD3_k127_1414913_1 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000002998 199.0
PJD3_k127_1426777_0 o-acetylhomoserine K01740 - 2.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005572 340.0
PJD3_k127_1426777_1 cheY-homologous receiver domain - - - 0.0000000000000000002545 100.0
PJD3_k127_143447_0 Acyl-CoA dehydrogenase, C-terminal domain K14448 - 1.3.8.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008808 289.0
PJD3_k127_143447_1 NADH pyrophosphatase-like rudimentary NUDIX domain K03426 GO:0003674,GO:0003824,GO:0004551,GO:0005488,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0030145,GO:0035529,GO:0043167,GO:0043169,GO:0046872,GO:0046914 3.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004463 276.0
PJD3_k127_143447_2 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000006083 125.0
PJD3_k127_143447_3 Putative regulatory protein - - - 0.000000000000000000001333 102.0
PJD3_k127_143447_4 - - - - 0.000000000001537 75.0
PJD3_k127_1453007_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 324.0
PJD3_k127_1453007_1 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000000001223 190.0
PJD3_k127_1453007_2 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000000000000000003633 89.0
PJD3_k127_1459584_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1538.0
PJD3_k127_1459584_1 ABC-type sugar transport system, periplasmic component K02027 - - 6.263e-207 653.0
PJD3_k127_1459584_10 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002025 274.0
PJD3_k127_1459584_11 Bacterial transcriptional repressor C-terminal K09017 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001264 256.0
PJD3_k127_1459584_12 Lysozyme inhibitor LprI - - - 0.00000000000000000000000000000000000000000000000000000005192 214.0
PJD3_k127_1459584_13 MlaD protein K02067 - - 0.0000000000000000000000000000000000000000000000166 188.0
PJD3_k127_1459584_14 ABC-type transport auxiliary lipoprotein component K18480 - - 0.000000000001086 79.0
PJD3_k127_1459584_2 Acyl-CoA dehydrogenase, C-terminal domain K09456 - - 8.386e-199 638.0
PJD3_k127_1459584_3 Binding-protein-dependent transport system inner membrane component K02025,K10237 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 515.0
PJD3_k127_1459584_4 TOBE domain K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003211 492.0
PJD3_k127_1459584_5 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004883 478.0
PJD3_k127_1459584_6 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 408.0
PJD3_k127_1459584_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 335.0
PJD3_k127_1459584_8 ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002009 291.0
PJD3_k127_1459584_9 Membrane-bound lysozyme-inhibitor of c-type lysozyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000096 275.0
PJD3_k127_1465674_0 TRAP C4-dicarboxylate transport system permease DctM subunit K11690,K21393 - - 1.642e-209 657.0
PJD3_k127_1465674_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002157 370.0
PJD3_k127_1465674_2 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.000000000000000000000000000000000000000000000000000000000000000752 224.0
PJD3_k127_1465674_3 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.00000000000000000000000000000000000000000000000000000104 203.0
PJD3_k127_1465674_4 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000003081 114.0
PJD3_k127_1465674_5 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000004911 102.0
PJD3_k127_1465674_6 Putative neutral zinc metallopeptidase K07054 - - 0.000000000000000000005432 104.0
PJD3_k127_1467006_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 2.748e-244 769.0
PJD3_k127_1467006_1 Thioredoxin K05838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 315.0
PJD3_k127_1467006_2 AAA ATPase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002881 287.0
PJD3_k127_1467006_3 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007681 274.0
PJD3_k127_1467006_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000008244 216.0
PJD3_k127_1467006_5 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000000000000000000000000000000000000000000000000000000000006993 225.0
PJD3_k127_1467006_6 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000000000000000004509 205.0
PJD3_k127_1467006_7 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000001313 195.0
PJD3_k127_1467006_8 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000000000005072 167.0
PJD3_k127_1467006_9 Sporulation related domain - - - 0.00000000000000000000000000000002864 136.0
PJD3_k127_147407_0 Penicillin amidase K01434 - 3.5.1.11 1.77e-288 912.0
PJD3_k127_147407_1 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 404.0
PJD3_k127_147407_2 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001835 369.0
PJD3_k127_147407_3 Binding-protein-dependent transport system inner membrane component K02042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 334.0
PJD3_k127_147407_4 Binding-protein-dependent transport system inner membrane component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001019 285.0
PJD3_k127_147407_5 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003661 268.0
PJD3_k127_147407_6 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000002445 263.0
PJD3_k127_147407_7 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000007303 226.0
PJD3_k127_1482165_0 Belongs to the GMC oxidoreductase family K00108 - 1.1.99.1 8.406e-194 619.0
PJD3_k127_1482165_1 Acyl-CoA dehydrogenase, middle domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009363 445.0
PJD3_k127_1482165_2 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000004729 204.0
PJD3_k127_1482165_3 lipid kinase, YegS Rv2252 BmrU family - - - 0.000000000000000000000000000000000000008491 160.0
PJD3_k127_1482165_4 - - - - 0.0000000001589 73.0
PJD3_k127_1482165_5 NYN domain - - - 0.0000002 52.0
PJD3_k127_1500339_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1221.0
PJD3_k127_1500339_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 2.674e-265 831.0
PJD3_k127_1500339_10 Cytochrome B561 - - - 0.0000000000000000000000000000000000000000000000000000000001811 223.0
PJD3_k127_1500339_11 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000002358 225.0
PJD3_k127_1500339_12 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.0000000000000000000000000000000000000000000000000000001483 199.0
PJD3_k127_1500339_13 Preprotein translocase, YajC subunit K03210 - - 0.00000000000000000000000000000000000000171 149.0
PJD3_k127_1500339_14 PFAM cytochrome c - - - 0.00000000000000000000000000003108 123.0
PJD3_k127_1500339_2 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 6.198e-204 643.0
PJD3_k127_1500339_3 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 562.0
PJD3_k127_1500339_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005254 454.0
PJD3_k127_1500339_5 PFAM Mg2 transporter protein, CorA family protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 304.0
PJD3_k127_1500339_6 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006924 274.0
PJD3_k127_1500339_7 Mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002226 254.0
PJD3_k127_1500339_8 Aminoacyl-tRNA editing domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000002127 240.0
PJD3_k127_1500339_9 cyclopropane-fatty-acyl-phospholipid synthase K16868 - 2.1.1.265 0.0000000000000000000000000000000000000000000000000000000000003044 218.0
PJD3_k127_1517143_0 Fumarate reductase flavoprotein C-term K00239,K00244 - 1.3.5.1,1.3.5.4 2.419e-280 882.0
PJD3_k127_1517143_1 Fumarate hydratase (Fumerase) K01677,K03779 - 4.2.1.2,4.2.1.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 445.0
PJD3_k127_1517143_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005052 323.0
PJD3_k127_1517143_3 Fumarase C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005737 292.0
PJD3_k127_1517143_4 transcriptional K03710 - - 0.000000000000000000000001782 106.0
PJD3_k127_1530453_0 dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes) K00382 K00382 - 1.8.1.4 6.042e-259 807.0
PJD3_k127_1530453_1 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000005776 61.0
PJD3_k127_15322_0 amp-dependent synthetase and ligase - - - 3.828e-223 710.0
PJD3_k127_15322_1 - - - - 0.0000000000000000002699 93.0
PJD3_k127_1582131_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 7.432e-242 764.0
PJD3_k127_1582131_1 binding-protein-dependent transport systems inner membrane component K02011 - - 2.859e-218 695.0
PJD3_k127_1582131_10 toxin biosynthetic process K03558 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009058,GO:0009403,GO:0009404,GO:0009987,GO:0016020,GO:0019748,GO:0044237,GO:0044249,GO:0044464,GO:0044550,GO:0071944 - 0.000000000000000001261 92.0
PJD3_k127_1582131_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003466 565.0
PJD3_k127_1582131_3 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 512.0
PJD3_k127_1582131_4 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009318 448.0
PJD3_k127_1582131_5 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004489 416.0
PJD3_k127_1582131_6 Belongs to the ABC transporter superfamily K02010,K02052 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001348 393.0
PJD3_k127_1582131_7 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001987 327.0
PJD3_k127_1582131_8 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 327.0
PJD3_k127_1582131_9 Sporulation related domain K03749 - - 0.000000000000000000000001569 112.0
PJD3_k127_1591126_0 Belongs to the glycosyl hydrolase 13 family K01200,K01214 - 3.2.1.41,3.2.1.68 5.074e-251 794.0
PJD3_k127_1591126_1 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 2.18e-240 751.0
PJD3_k127_1591126_2 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 0.00000000000000000000000000000000000000000000000000000000001605 229.0
PJD3_k127_1610132_0 Periplasmic binding protein K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008116 596.0
PJD3_k127_1610132_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009868 541.0
PJD3_k127_1610132_2 AMP-binding enzyme K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 531.0
PJD3_k127_1610132_3 branched-chain amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004514 433.0
PJD3_k127_1610132_4 Succinylglutamate desuccinylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007181 340.0
PJD3_k127_1610132_5 N-formylglutamate amidohydrolase K01458 - 3.5.1.68 0.0000000000000000000000000000000000000000000000000000000000000000000000002772 258.0
PJD3_k127_1610132_6 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000005943 184.0
PJD3_k127_1624228_0 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 493.0
PJD3_k127_1624228_1 ISPsy14, transposition helper protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007269 279.0
PJD3_k127_1636795_0 DNA polymerase K02337 - 2.7.7.7 1.939e-306 951.0
PJD3_k127_164380_0 Putative serine dehydratase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000115 274.0
PJD3_k127_164380_1 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.000000000003005 66.0
PJD3_k127_1645038_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006113 355.0
PJD3_k127_1645038_1 - - - - 0.00000000000000000000000000000406 119.0
PJD3_k127_1645038_2 thiamine-containing compound biosynthetic process K02051 - - 0.0000000000000000000000001056 109.0
PJD3_k127_1682994_0 Lactonase, 7-bladed beta-propeller - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003275 404.0
PJD3_k127_1682994_1 Fatty acid hydroxylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 359.0
PJD3_k127_1682994_2 deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 306.0
PJD3_k127_1682994_3 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000021 174.0
PJD3_k127_1682994_4 Etoposide-induced protein 2.4 (EI24) - - - 0.0000000000000000000000000000000000000000000008363 177.0
PJD3_k127_1682994_5 Auxin Efflux Carrier K07088 - - 0.0000000000000000007929 92.0
PJD3_k127_1686227_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 484.0
PJD3_k127_1686227_1 flagellar basal-body rod protein K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 391.0
PJD3_k127_1686227_2 flagellar hook-associated protein K02396 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 379.0
PJD3_k127_1686227_3 Flagellar rod assembly protein muramidase FlgJ K02395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006209 253.0
PJD3_k127_1686227_4 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000001711 231.0
PJD3_k127_1686227_5 Flagellar basal-body rod protein FlgF K02391 - - 0.000000000000000000000002608 104.0
PJD3_k127_1690051_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1092.0
PJD3_k127_1690051_1 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00166 - 1.2.4.4 1.151e-215 677.0
PJD3_k127_1690051_10 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 356.0
PJD3_k127_1690051_11 esterase K01432 - 3.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 300.0
PJD3_k127_1690051_12 TIGRFAM channel protein, hemolysin III family K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006683 287.0
PJD3_k127_1690051_13 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000000000000002109 170.0
PJD3_k127_1690051_14 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.00000000000000000000000000000001101 132.0
PJD3_k127_1690051_15 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000003137 126.0
PJD3_k127_1690051_16 2-oxoacid ferredoxin oxidoreductase, alpha subunit K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.000000000000000000000000001316 114.0
PJD3_k127_1690051_18 Chorismate mutase K00014,K00891,K04092,K04516 - 1.1.1.25,2.7.1.71,5.4.99.5 0.00008226 45.0
PJD3_k127_1690051_2 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzymes K00382 - 1.8.1.4 7.535e-204 644.0
PJD3_k127_1690051_3 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 634.0
PJD3_k127_1690051_4 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 587.0
PJD3_k127_1690051_5 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component and related enzymes K09699 - 2.3.1.168 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004859 559.0
PJD3_k127_1690051_6 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004816 514.0
PJD3_k127_1690051_7 PFAM Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007716 402.0
PJD3_k127_1690051_8 Permease, YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008549 383.0
PJD3_k127_1690051_9 Permease, YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007342 382.0
PJD3_k127_1699621_0 Male sterility protein - - - 1.963e-266 827.0
PJD3_k127_1713016_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 560.0
PJD3_k127_1713016_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005384 451.0
PJD3_k127_1713016_2 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 402.0
PJD3_k127_1713016_3 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001535 257.0
PJD3_k127_1716791_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 297.0
PJD3_k127_1716791_1 PFAM FAD linked oxidase domain protein K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 0.0000000000000000000000000000000000000003151 154.0
PJD3_k127_1723353_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 3.631e-215 677.0
PJD3_k127_1723353_1 belongs to the aldehyde dehydrogenase family K00128,K00154 - 1.2.1.3,1.2.1.68 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 401.0
PJD3_k127_1723353_2 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008208 365.0
PJD3_k127_1723353_3 Iron-sulfur cluster assembly transcription factor K13643 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000565 261.0
PJD3_k127_1723353_4 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.000000000000000000000000000000000000000000000000000000000000000000000722 238.0
PJD3_k127_1723353_5 Belongs to the HesB IscA family K13628 - - 0.000000000000000000000000000000000000000000000000008602 181.0
PJD3_k127_1723353_6 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.00000000000000000000000000000000000000000000000109 179.0
PJD3_k127_1729717_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000872 504.0
PJD3_k127_1729717_1 transglycosylase - - - 0.000000000000000000000004999 108.0
PJD3_k127_1729717_2 Domain of unknown function (DUF3330) - - - 0.000000000001491 72.0
PJD3_k127_1729717_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000006347 68.0
PJD3_k127_1731142_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.408e-206 663.0
PJD3_k127_1731142_1 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000135 239.0
PJD3_k127_175270_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000552 526.0
PJD3_k127_175270_1 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 510.0
PJD3_k127_175270_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000004128 138.0
PJD3_k127_175270_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000006441 101.0
PJD3_k127_175270_4 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000001968 102.0
PJD3_k127_1759226_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 429.0
PJD3_k127_1759226_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 289.0
PJD3_k127_1759226_2 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.00000000000000000000002616 107.0
PJD3_k127_1759367_0 PGAP1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002593 452.0
PJD3_k127_1759367_1 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001098 243.0
PJD3_k127_1759367_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003566 227.0
PJD3_k127_1759367_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000003632 200.0
PJD3_k127_1759367_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000007564 156.0
PJD3_k127_1759367_5 divalent heavy-metal cations transporter K07238 - - 0.0000000000000000000000009184 107.0
PJD3_k127_1759367_6 Belongs to the UPF0235 family K09131 - - 0.0000000000000000000355 91.0
PJD3_k127_1809674_0 Recombination factor protein RarA K07478 - - 2.273e-196 624.0
PJD3_k127_1809674_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006958 361.0
PJD3_k127_1809674_2 Major Facilitator Superfamily - - - 0.00000000000000000000001044 102.0
PJD3_k127_1859706_0 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 596.0
PJD3_k127_1859706_1 Ribonuclease E/G family K08301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 372.0
PJD3_k127_1859706_2 Catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time K02337 - 2.7.7.7 0.000000000000000000000000000000000001189 143.0
PJD3_k127_1887540_0 Mannose-6-phosphate isomerase K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 557.0
PJD3_k127_1887540_1 Signal transduction histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007907 346.0
PJD3_k127_1887540_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006847 292.0
PJD3_k127_1887540_3 UDP-glucose 4-epimerase K01784 - 5.1.3.2 0.0000000000000000000000000000003459 126.0
PJD3_k127_1887540_4 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000006122 126.0
PJD3_k127_1887540_5 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000001466 64.0
PJD3_k127_1900104_0 Dehydrogenase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 9.342e-225 706.0
PJD3_k127_1900104_1 helicase K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 621.0
PJD3_k127_1900104_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005579 571.0
PJD3_k127_1900104_3 PFAM AFG1-family ATPase K06916 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000773 488.0
PJD3_k127_1900104_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005705 322.0
PJD3_k127_1900104_5 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007306 312.0
PJD3_k127_1900104_6 E1 component K00164 - 1.2.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000004337 240.0
PJD3_k127_1900104_7 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000004918 186.0
PJD3_k127_1900104_8 Protein of unknown function (DUF465) - - - 0.0000000000000006209 81.0
PJD3_k127_192312_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 586.0
PJD3_k127_192312_1 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000006673 139.0
PJD3_k127_192312_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000007318 83.0
PJD3_k127_192312_3 - - - - 0.00000000000006336 78.0
PJD3_k127_1948822_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1131.0
PJD3_k127_1948822_1 Protein of unknown function (DUF938) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001527 244.0
PJD3_k127_1948822_2 Protein of unknown function (DUF2846) - - - 0.0000000000000000000000000000000000004967 145.0
PJD3_k127_1948822_3 peptidase S1 and S6, chymotrypsin Hap - - - 0.0000000000000000000000000000005845 128.0
PJD3_k127_1948822_4 GYD domain - - - 0.00000000000000000000000000001174 136.0
PJD3_k127_1948822_5 beta' subunit K01754 - 4.3.1.19 0.0000000000003019 70.0
PJD3_k127_1948822_6 Esterase PHB depolymerase K03932 - - 0.0006418 51.0
PJD3_k127_1959989_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 518.0
PJD3_k127_1959989_1 acid transport system permease K09970 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 386.0
PJD3_k127_1959989_2 ABC transporter K02028,K09972 - 3.6.3.21 0.00000000217 58.0
PJD3_k127_1961897_0 Domain of unknown function (DUF1974) K06445 - - 3.331e-319 994.0
PJD3_k127_1961897_1 Putative serine dehydratase domain K20757 - 4.3.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007534 355.0
PJD3_k127_1961897_2 - - - - 0.000000000000000000005776 96.0
PJD3_k127_1961897_3 COG0471 Di- and tricarboxylate transporters - - - 0.00000000003233 65.0
PJD3_k127_1972200_0 PFAM LemA family protein K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002082 282.0
PJD3_k127_1972200_1 TPM domain K06872 - - 0.0000000000000000000000000000000000000000000000000000000000001137 224.0
PJD3_k127_1972200_2 Psort location Extracellular, score K07126 - - 0.000000000000000000000000000000002642 138.0
PJD3_k127_1977276_0 acetylornithine K00819,K00821 - 2.6.1.11,2.6.1.13,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 591.0
PJD3_k127_1977276_1 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004173 399.0
PJD3_k127_1977276_10 helix_turn_helix ASNC type K03719 - - 0.000000000000000000000000000000000000000000000000000000007678 202.0
PJD3_k127_1977276_11 PFAM DoxX family protein K15977 - - 0.0000000000000000000000000000000000000000000000002784 177.0
PJD3_k127_1977276_12 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000000000000000000000000000000004675 139.0
PJD3_k127_1977276_13 Fe-S-cluster oxidoreductase K06940 - - 0.0000000000000000000000000000000003128 142.0
PJD3_k127_1977276_14 FR47-like protein - - - 0.000000000000000000000000000000007448 135.0
PJD3_k127_1977276_15 .,Oxidizes proline to glutamate for use as a carbon and nitrogen source - - - 0.000000000000000000001832 106.0
PJD3_k127_1977276_16 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.00000000000000001032 88.0
PJD3_k127_1977276_17 aspartic-type endopeptidase activity K06985 - - 0.000000000000001242 92.0
PJD3_k127_1977276_2 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002346 365.0
PJD3_k127_1977276_3 ADP-glyceromanno-heptose 6-epimerase activity K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 341.0
PJD3_k127_1977276_4 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 338.0
PJD3_k127_1977276_5 Amidinotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 316.0
PJD3_k127_1977276_6 Binding-protein-dependent transport system inner membrane component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008888 270.0
PJD3_k127_1977276_7 COG3639 ABC-type phosphate phosphonate transport system, permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001906 254.0
PJD3_k127_1977276_8 TIGRFAM Haloacid Dehalogenase Superfamily Class (subfamily) IIA - - - 0.000000000000000000000000000000000000000000000000000000000000005693 228.0
PJD3_k127_1977276_9 cytochrome complex assembly K02200 - - 0.00000000000000000000000000000000000000000000000000000000000001121 227.0
PJD3_k127_1982235_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 9.564e-209 660.0
PJD3_k127_1982235_1 FAD linked oxidases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 578.0
PJD3_k127_1982235_2 Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000002233 237.0
PJD3_k127_1982235_3 PFAM Patatin K07001 - - 0.00000000000000000000000000000000000000000000000000006044 200.0
PJD3_k127_1982235_4 - - - - 0.000000000000000000000002377 104.0
PJD3_k127_1982235_6 HicB family - - - 0.00000002396 67.0
PJD3_k127_1984346_0 D-alanyl-d-alanine carboxypeptidase K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 372.0
PJD3_k127_1984346_1 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 298.0
PJD3_k127_1984346_2 VanZ like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003696 284.0
PJD3_k127_1984346_3 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000001728 147.0
PJD3_k127_1987343_0 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 525.0
PJD3_k127_1987343_1 PFAM phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000004158 175.0
PJD3_k127_1987343_2 Amidohydrolase family K01465 - 3.5.2.3 0.00000000000000000000000000000000000000000001639 164.0
PJD3_k127_1987769_0 Ammonium Transporter Family K03320,K06580 - - 2.205e-197 629.0
PJD3_k127_1987769_1 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008888 559.0
PJD3_k127_1987769_2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003287 544.0
PJD3_k127_1987769_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 503.0
PJD3_k127_1987769_4 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 320.0
PJD3_k127_1987769_5 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001322 258.0
PJD3_k127_1987769_6 SelR domain K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000001562 208.0
PJD3_k127_1987769_7 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0000000000000000000000000000000000000000000000003089 176.0
PJD3_k127_1987769_8 universal stress protein - - - 0.000000000000000000000000000000003833 134.0
PJD3_k127_1992111_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 7.338e-226 707.0
PJD3_k127_1992111_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007312 397.0
PJD3_k127_1992111_10 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000000000000002797 217.0
PJD3_k127_1992111_11 binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000000000000000977 210.0
PJD3_k127_1992111_12 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000001495 202.0
PJD3_k127_1992111_13 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000000001022 172.0
PJD3_k127_1992111_14 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.00000000000000000000000000000000000000000005777 166.0
PJD3_k127_1992111_15 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000000000000000000000000002379 155.0
PJD3_k127_1992111_16 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000005811 145.0
PJD3_k127_1992111_17 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000000003794 118.0
PJD3_k127_1992111_18 Ribosomal protein L30p/L7e K02907 - - 0.0000000000000000001551 91.0
PJD3_k127_1992111_19 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000000000000000006865 89.0
PJD3_k127_1992111_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 364.0
PJD3_k127_1992111_20 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000001036 74.0
PJD3_k127_1992111_21 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000001949 72.0
PJD3_k127_1992111_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 341.0
PJD3_k127_1992111_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004351 319.0
PJD3_k127_1992111_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008783 283.0
PJD3_k127_1992111_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008224 252.0
PJD3_k127_1992111_7 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004394 248.0
PJD3_k127_1992111_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000000659 231.0
PJD3_k127_1992111_9 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000000000002984 222.0
PJD3_k127_1993009_0 flagellar motor switch protein K02416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006969 451.0
PJD3_k127_1993009_1 Plays a role in the flagellum-specific transport system K02419 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 316.0
PJD3_k127_1993009_2 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000000000000000000000001847 214.0
PJD3_k127_1993009_3 Flagellar motor switch protein fliN K02417,K03225 - - 0.0000000000000000000000000000000000000000000002729 171.0
PJD3_k127_1993009_4 Role in flagellar biosynthesis K02420 - - 0.000000000000000000000003132 104.0
PJD3_k127_1993009_5 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.00000000000000000000003809 107.0
PJD3_k127_1993009_6 Flagellar hook-length control protein K02414 - - 0.0000000000005395 81.0
PJD3_k127_1993009_7 flagellar K02418 - - 0.000000001039 63.0
PJD3_k127_1999201_0 transport system, fused permease components - - - 0.0 1048.0
PJD3_k127_1999201_1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 - - 1.828e-196 643.0
PJD3_k127_1999201_2 Transmembrane secretion effector K08225 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001825 501.0
PJD3_k127_1999201_3 TRAP transporter solute receptor TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 410.0
PJD3_k127_1999201_4 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005332 334.0
PJD3_k127_1999201_6 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000006645 249.0
PJD3_k127_1999201_7 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000008589 228.0
PJD3_k127_1999201_8 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000000000000000009468 173.0
PJD3_k127_1999201_9 PFAM NHL repeat containing protein - - - 0.000000004453 69.0
PJD3_k127_200118_0 Cytochrome b/b6/petB - - - 0.0 1315.0
PJD3_k127_200118_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 1.187e-279 866.0
PJD3_k127_200118_10 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002247 265.0
PJD3_k127_200118_11 Enoyl-CoA hydratase - - - 0.0004135 46.0
PJD3_k127_200118_2 Sulphur transport K07112 - - 4.194e-205 646.0
PJD3_k127_200118_3 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 582.0
PJD3_k127_200118_4 ATP ADP translocase K03301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 544.0
PJD3_k127_200118_5 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 451.0
PJD3_k127_200118_6 MmgE/PrpD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 425.0
PJD3_k127_200118_7 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008501 404.0
PJD3_k127_200118_8 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 294.0
PJD3_k127_200118_9 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 291.0
PJD3_k127_2001938_0 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 528.0
PJD3_k127_2001938_1 ABC-type phosphate phosphonate transport system permease component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 381.0
PJD3_k127_2001938_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 371.0
PJD3_k127_2001938_3 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005027 372.0
PJD3_k127_2001938_4 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005224 311.0
PJD3_k127_2001938_5 hydrolases of the HAD superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000001783 238.0
PJD3_k127_2001938_6 EamA-like transporter family - - - 0.0000000000000000001943 91.0
PJD3_k127_2002264_0 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007113 485.0
PJD3_k127_2002264_1 fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004355 273.0
PJD3_k127_2002264_2 peptidyl-prolyl cis-trans isomerase K03774 - 5.2.1.8 0.000000000000000000000000000000000000000000000000002135 189.0
PJD3_k127_2003208_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 524.0
PJD3_k127_2003208_1 mandelate racemase muconate lactonizing - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 503.0
PJD3_k127_2003208_10 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000007293 169.0
PJD3_k127_2003208_11 Protein of unknown function (DUF2877) - - - 0.00000000000000000000000000000000003652 155.0
PJD3_k127_2003208_12 CoA-ligase K02381 - - 0.000000003125 65.0
PJD3_k127_2003208_13 Tripartite tricarboxylate transporter TctB family - - - 0.0000002301 61.0
PJD3_k127_2003208_2 Protein of unknown function (DUF1116) K02381 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006814 451.0
PJD3_k127_2003208_3 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 391.0
PJD3_k127_2003208_4 Fumarylacetoacetate (FAA) hydrolase family K02509 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003836 389.0
PJD3_k127_2003208_5 CoA-ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000796 367.0
PJD3_k127_2003208_6 Belongs to the carbamate kinase family K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 321.0
PJD3_k127_2003208_7 HpcH/HpaI aldolase/citrate lyase family K02510 - 4.1.2.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 302.0
PJD3_k127_2003208_8 Tripartite tricarboxylate transporter family receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000009276 233.0
PJD3_k127_2003208_9 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.00000000000000000000000000000000000000000000000361 183.0
PJD3_k127_2004541_0 binding-protein-dependent transport systems inner membrane component K02011 - - 2.098e-265 831.0
PJD3_k127_2004541_1 TIGRFAM 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 606.0
PJD3_k127_2004541_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 454.0
PJD3_k127_2004541_3 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 335.0
PJD3_k127_2004541_4 FCD - - - 0.00000000000000000000000000000000000000000000000000000000005476 228.0
PJD3_k127_2004541_5 PFAM type I phosphodiesterase nucleotide pyrophosphatase K19670 - 3.11.1.2 0.00000000000000000000000000000000000005023 156.0
PJD3_k127_2019525_0 FAD linked oxidases, C-terminal domain K00102,K03777 - 1.1.2.4,1.1.5.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 602.0
PJD3_k127_2019525_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 368.0
PJD3_k127_2022636_0 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 461.0
PJD3_k127_2022636_1 Beta-eliminating lyase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 366.0
PJD3_k127_2022636_2 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000433 261.0
PJD3_k127_2022636_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000001885 273.0
PJD3_k127_2027101_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 507.0
PJD3_k127_2027101_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 450.0
PJD3_k127_2027101_2 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006163 423.0
PJD3_k127_2027101_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001911 380.0
PJD3_k127_2027101_4 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 362.0
PJD3_k127_2027101_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003871 295.0
PJD3_k127_2027101_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000852 261.0
PJD3_k127_2027101_7 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000001036 201.0
PJD3_k127_2036233_0 response regulator K02481 - - 1.341e-245 764.0
PJD3_k127_2036233_1 denitrification pathway - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 557.0
PJD3_k127_2036233_2 cytochrome - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 366.0
PJD3_k127_2036233_3 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005496 266.0
PJD3_k127_2036233_4 Pfam Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000002787 189.0
PJD3_k127_2036233_5 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000008172 113.0
PJD3_k127_2036233_6 Membrane-bound lysozyme-inhibitor of c-type lysozyme - - - 0.0000000000000000003749 86.0
PJD3_k127_2071032_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1239.0
PJD3_k127_2071032_1 ABC-type branched-chain amino acid transport system, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007602 565.0
PJD3_k127_2071032_10 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000006199 245.0
PJD3_k127_2071032_11 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000004184 213.0
PJD3_k127_2071032_12 Belongs to the skp family K06142 - - 0.00000000000000000000000000000000000000000000000001414 192.0
PJD3_k127_2071032_13 Exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000006652 153.0
PJD3_k127_2071032_14 Membrane protein implicated in regulation of membrane protease activity - - - 0.0000000000000000000000004204 109.0
PJD3_k127_2071032_2 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006258 532.0
PJD3_k127_2071032_3 C-terminal region of band_7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 452.0
PJD3_k127_2071032_4 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 387.0
PJD3_k127_2071032_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009526 372.0
PJD3_k127_2071032_6 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006386 371.0
PJD3_k127_2071032_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 367.0
PJD3_k127_2071032_8 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 327.0
PJD3_k127_2071032_9 SpoU rRNA Methylase family K03437 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006921 250.0
PJD3_k127_2073079_0 Molybdenum cofactor synthesis domain protein K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009603 537.0
PJD3_k127_2073079_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 522.0
PJD3_k127_2073079_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 387.0
PJD3_k127_2073079_3 ATPase associated with various cellular activities, AAA_5 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007898 269.0
PJD3_k127_2073079_4 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000003733 226.0
PJD3_k127_2073079_5 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.0000000000000000000000000000000000000000000000000000000000001879 221.0
PJD3_k127_2073079_6 Cytochrome c - - - 0.00000000000000000000000000000000000495 142.0
PJD3_k127_2073079_7 cytochrome - - - 0.00000000000000000000001632 109.0
PJD3_k127_2073079_8 Protein of unknown function (DUF3306) - - - 0.0000000000000000000000326 111.0
PJD3_k127_2073079_9 Protein of unknown function (DUF3305) - - - 0.000000000000000000002994 100.0
PJD3_k127_208953_0 Benzoate membrane transport protein K05782 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 517.0
PJD3_k127_208953_1 methionine synthase K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001808 504.0
PJD3_k127_208953_2 Highly conserved protein containing a thioredoxin domain K06888 - - 0.00000000000000000000000000000000000000000000000025 184.0
PJD3_k127_2098176_0 AMP-binding enzyme C-terminal domain K00666 - - 2.56e-241 757.0
PJD3_k127_2098176_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008066 491.0
PJD3_k127_2098176_2 Serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002465 453.0
PJD3_k127_2098176_3 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 354.0
PJD3_k127_2098176_4 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 331.0
PJD3_k127_2098176_5 Domain of unknown function (DUF1732) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009748 266.0
PJD3_k127_2098176_6 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000004245 257.0
PJD3_k127_2098176_7 glutamine synthetase K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 0.000000000000000000000000000000000000135 143.0
PJD3_k127_2098176_8 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000009344 72.0
PJD3_k127_2100689_0 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000000000000004573 189.0
PJD3_k127_2100689_1 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.00000000000000000000000000000000000000000000005386 179.0
PJD3_k127_2100689_2 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.0000000000000000000000000000000000000007883 152.0
PJD3_k127_2100689_3 Flagellar hook capping protein - N-terminal region K02389 - - 0.00000000000000000000000000000006692 139.0
PJD3_k127_2101567_0 Flagellar protein export ATPase FliI K02412 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 586.0
PJD3_k127_2101567_1 Flagellar export protein FliJ K02413 - - 0.000000941 56.0
PJD3_k127_2104031_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 558.0
PJD3_k127_2104031_1 TRAP dicarboxylate transporter K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 493.0
PJD3_k127_2104031_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 441.0
PJD3_k127_2104031_3 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 391.0
PJD3_k127_2104031_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000001218 179.0
PJD3_k127_2104031_5 mandelate racemase muconate lactonizing K01706 - 4.2.1.40 0.00000001564 61.0
PJD3_k127_2114489_0 Domain of unknown function (DUF3394) - - - 1.838e-313 973.0
PJD3_k127_2114489_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 531.0
PJD3_k127_2114489_2 NMT1-like family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 501.0
PJD3_k127_2114489_3 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 485.0
PJD3_k127_2114489_4 Protein of unknown function (DUF3179) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 338.0
PJD3_k127_2114489_5 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000232 267.0
PJD3_k127_2114489_6 YaeQ family - - - 0.000000000000000000000000000000000000000000000000000000000000008711 224.0
PJD3_k127_2114489_7 Uncharacterised protein family (UPF0149) K07039 - - 0.00000000000000000000000000000000001089 149.0
PJD3_k127_2114489_8 Phasin protein - - - 0.0000005439 53.0
PJD3_k127_2134000_0 Nitrite and sulphite reductase 4Fe-4S domain K11180 - 1.8.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 569.0
PJD3_k127_2134000_1 Taurine catabolism dioxygenase TauD, TfdA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 331.0
PJD3_k127_2134000_2 Sulfurtransferase TusA - - - 0.0000000000000000000000000000000000000000000000000004354 192.0
PJD3_k127_2134000_3 - - - - 0.0000000000000000000000000000000000816 140.0
PJD3_k127_2134000_4 Cas6 Crispr - - - 0.00000000000000000000000000000003991 137.0
PJD3_k127_2134000_5 - - - - 0.000000000000000002819 88.0
PJD3_k127_2136324_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 475.0
PJD3_k127_2136324_1 Phosphotransferase enzyme family K00899 - 2.7.1.100 0.00000000000000000000000000000000000000000000000000000000000002598 220.0
PJD3_k127_2136324_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000002597 102.0
PJD3_k127_2136324_3 - - - - 0.0000000000000000004724 99.0
PJD3_k127_2141883_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 507.0
PJD3_k127_2141883_1 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.00000000000000000000000000000000000000000000000000000000003889 211.0
PJD3_k127_2141883_2 subunit of a heme lyase K02200 - - 0.000000000000000000000000000001614 130.0
PJD3_k127_2141883_3 Major facilitator superfamily - - - 0.0000000000000000000003454 98.0
PJD3_k127_2143215_0 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 418.0
PJD3_k127_2143215_1 RmuC family K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008717 287.0
PJD3_k127_214547_0 - - - - 2.632e-210 662.0
PJD3_k127_214547_1 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005954 403.0
PJD3_k127_214547_2 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001205 267.0
PJD3_k127_2161506_0 Gamma-glutamyltranspeptidase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 1.186e-234 737.0
PJD3_k127_2161506_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 456.0
PJD3_k127_2161506_2 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K01560 - 3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008241 330.0
PJD3_k127_2161506_3 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000006211 134.0
PJD3_k127_2161506_4 Protein of unknown function (DUF1499) - - - 0.00000000000000000000000000001648 127.0
PJD3_k127_2164646_0 dna topoisomerase III K03169 - 5.99.1.2 0.0 1214.0
PJD3_k127_2164646_1 PFAM binding-protein-dependent transport systems inner membrane component K02011 - - 3.828e-253 792.0
PJD3_k127_2164646_2 extracellular solute-binding protein, family 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 590.0
PJD3_k127_2164646_3 Integral membrane protein TerC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 328.0
PJD3_k127_2164646_4 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002258 279.0
PJD3_k127_2164646_5 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000001185 187.0
PJD3_k127_2164646_6 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.00000000000000000000000000000000000000000000003782 177.0
PJD3_k127_2164646_7 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000001175 153.0
PJD3_k127_2177514_0 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 430.0
PJD3_k127_2177514_1 PFAM peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 337.0
PJD3_k127_2177514_2 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000006002 217.0
PJD3_k127_2177514_3 hydroperoxide reductase activity - - - 0.0000000000000000000000000000000000000000000000000000004924 213.0
PJD3_k127_2177514_4 PFAM AMP-dependent synthetase and ligase K01907 - 6.2.1.16 0.00000000000000000000000000000004779 129.0
PJD3_k127_2186632_0 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005794 385.0
PJD3_k127_2186632_1 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004891 378.0
PJD3_k127_2186632_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000002698 265.0
PJD3_k127_2186632_3 glycosyl transferase, family 25 K07270 - - 0.0000000000000000000000000000000000000000000001302 181.0
PJD3_k127_2186632_4 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000233 124.0
PJD3_k127_2186844_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 609.0
PJD3_k127_2186844_1 TRAP transporter solute receptor, TAXI family K07080 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025 462.0
PJD3_k127_2186844_2 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 310.0
PJD3_k127_2186844_3 PFAM LrgB family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001187 296.0
PJD3_k127_2186844_4 Glycolate oxidase, iron-sulfur subunit K11473 - - 0.000000000000000000000000000000000000000000003374 166.0
PJD3_k127_2186844_5 Bacterial protein of unknown function (DUF883) - - - 0.000000000000000000000000000000006323 130.0
PJD3_k127_2186844_6 LrgA family K06518 - - 0.0000000000000000000533 99.0
PJD3_k127_2186844_7 membrane - - - 0.0000000000000000002312 93.0
PJD3_k127_2215383_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009749 541.0
PJD3_k127_2215383_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 495.0
PJD3_k127_2215383_2 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 472.0
PJD3_k127_2215383_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 361.0
PJD3_k127_2215383_4 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 353.0
PJD3_k127_2215383_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 328.0
PJD3_k127_2215383_6 carbon monoxide dehydrogenase subunit G K09386 - - 0.000000000000000000000000000000000000000000000005123 180.0
PJD3_k127_2229790_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1024.0
PJD3_k127_2229790_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009707 551.0
PJD3_k127_2229790_2 Metallopeptidase family M24 K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009327 449.0
PJD3_k127_2229790_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 400.0
PJD3_k127_2229790_4 Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 299.0
PJD3_k127_2229790_5 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000005253 189.0
PJD3_k127_2231990_0 D-aminoacylase domain protein K06015 - 3.5.1.81 4.129e-264 819.0
PJD3_k127_2231990_1 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006082 276.0
PJD3_k127_2231990_2 Methylmalonyl-CoA mutase K01848 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.4.99.2 0.000000000000000000002283 95.0
PJD3_k127_2252939_0 Sulfatase - - - 2.766e-237 746.0
PJD3_k127_2252939_1 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 396.0
PJD3_k127_2252939_2 PFAM conserved - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005464 373.0
PJD3_k127_2252939_3 Aldehyde dehydrogenase family K00294 - 1.2.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000361 268.0
PJD3_k127_2252939_4 Evidence 4 Homologs of previously reported genes of K09700 - - 0.0000000000003236 69.0
PJD3_k127_2252939_5 Alpha beta hydrolase - - - 0.00000000001324 64.0
PJD3_k127_2253898_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 7.042e-266 847.0
PJD3_k127_2253898_1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008598 389.0
PJD3_k127_2253898_2 Protein of unknown function - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 370.0
PJD3_k127_2253898_3 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000001569 240.0
PJD3_k127_225973_0 RESPONSE REGULATOR receiver - - - 2.943e-243 771.0
PJD3_k127_225973_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 384.0
PJD3_k127_225973_2 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 346.0
PJD3_k127_225973_3 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002461 334.0
PJD3_k127_225973_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009076 293.0
PJD3_k127_225973_5 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000001033 184.0
PJD3_k127_225973_6 Ferrous iron transport protein B K04759 - - 0.00000000000000000000000000000008933 126.0
PJD3_k127_2275246_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 4.809e-217 691.0
PJD3_k127_2275246_1 transport system, fused permease components - - - 0.00000000000000000000000000000000000000000000000000000006346 200.0
PJD3_k127_2275246_2 Glyoxalase-like domain - - - 0.000000000000000000000000000000000000000000008163 174.0
PJD3_k127_22775_0 CHASE - - - 1.949e-311 1007.0
PJD3_k127_22775_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 1.987e-209 662.0
PJD3_k127_22775_2 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 572.0
PJD3_k127_22775_3 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000203 436.0
PJD3_k127_22775_4 Peptidase M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004949 319.0
PJD3_k127_22775_5 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003523 297.0
PJD3_k127_22775_6 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 293.0
PJD3_k127_22775_7 Nucleoside H+ symporter K05820 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005609 281.0
PJD3_k127_22775_8 DoxX K15977 - - 0.00000000000000000000000000000000000000000000000000000001106 201.0
PJD3_k127_22775_9 PFAM GAF domain protein - - - 0.00000000000000000000000000000001342 138.0
PJD3_k127_2277955_0 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 344.0
PJD3_k127_2277955_1 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000117 259.0
PJD3_k127_2277955_2 2-hydroxychromene-2-carboxylate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000002524 237.0
PJD3_k127_2277955_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000002013 218.0
PJD3_k127_2296805_0 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 399.0
PJD3_k127_2296805_1 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 353.0
PJD3_k127_2296805_2 phenylacetic acid degradation protein K02614 - - 0.0000000000000000000000000000000000000000000000009579 179.0
PJD3_k127_2296805_3 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000002679 123.0
PJD3_k127_2327919_0 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 350.0
PJD3_k127_2327919_1 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 336.0
PJD3_k127_2329427_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00179 - 1.2.7.8 2.676e-312 965.0
PJD3_k127_2329427_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 372.0
PJD3_k127_2375457_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 1.103e-218 689.0
PJD3_k127_2375457_1 TIGRFAM serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000003402 257.0
PJD3_k127_2375457_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000625 243.0
PJD3_k127_2375457_3 Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K03269 - 3.6.1.54 0.0000000000000000000000000000000000000000000000000000008176 209.0
PJD3_k127_2375457_4 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000001055 154.0
PJD3_k127_2375457_5 - - - - 0.000000000000000000000000000000003213 132.0
PJD3_k127_2382011_0 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 539.0
PJD3_k127_2382011_1 NAD NADP octopine nopaline dehydrogenase K04940 - 1.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 409.0
PJD3_k127_2436533_0 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 436.0
PJD3_k127_2436533_1 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.00000000000000000000000000000000000000000001979 166.0
PJD3_k127_2436533_2 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000001367 74.0
PJD3_k127_2447072_0 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009289 430.0
PJD3_k127_2447072_1 Amino acid synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 309.0
PJD3_k127_2447072_2 2-keto-4-pentenoate hydratase K02554 - 4.2.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005053 298.0
PJD3_k127_2447072_3 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005278 272.0
PJD3_k127_2447072_4 sh3 domain protein - - - 0.000000000000000000000000000000000000000000000000000000002456 214.0
PJD3_k127_2447072_5 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000001618 173.0
PJD3_k127_2447072_6 response to heat - - - 0.0000000000000000000000000000000003153 145.0
PJD3_k127_2447072_7 Dehydrogenase K00252 - 1.3.8.6 0.000000000000000000000000001886 121.0
PJD3_k127_2447072_8 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006139,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009310,GO:0009435,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019441,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0020037,GO:0022607,GO:0034641,GO:0034654,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043648,GO:0043650,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0046906,GO:0048037,GO:0051186,GO:0051188,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.13.11.11 0.00000000000431 65.0
PJD3_k127_246072_0 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 511.0
PJD3_k127_246072_1 TonB dependent receptor K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 355.0
PJD3_k127_246072_2 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007559 348.0
PJD3_k127_246072_3 Biopolymer transport K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 294.0
PJD3_k127_246072_4 Periplasmic binding protein K02016,K06858 - - 0.000000000000000000000000000000000000000000000000000005842 205.0
PJD3_k127_246072_5 Biopolymer transport protein K03559 - - 0.00000000000000000000000000000000000000000000000008797 184.0
PJD3_k127_246072_6 cytochrome c biogenesis protein K04084 - 1.8.1.8 0.000000000000000000002722 95.0
PJD3_k127_246072_7 TonB domain protein K03832 - - 0.000000000000000000002913 102.0
PJD3_k127_2481752_0 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 419.0
PJD3_k127_2481752_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000436 265.0
PJD3_k127_2481752_2 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000005879 245.0
PJD3_k127_2481752_3 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000001217 154.0
PJD3_k127_248536_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 9.793e-227 709.0
PJD3_k127_248536_1 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002661 293.0
PJD3_k127_2488059_0 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 503.0
PJD3_k127_2488059_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007551 410.0
PJD3_k127_2488059_2 fumarylacetoacetate (FAA) hydrolase K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 409.0
PJD3_k127_2488059_3 FIST N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003583 284.0
PJD3_k127_2488059_4 CoA-binding protein K06929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007542 251.0
PJD3_k127_2488059_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000008782 161.0
PJD3_k127_2488059_6 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 0.000000000000000000000000000001105 121.0
PJD3_k127_2488059_7 transmembrane transcriptional regulator (Anti-sigma factor) - - - 0.0000000000000000000000000008772 124.0
PJD3_k127_2488059_8 - - - - 0.0000000000000000001681 102.0
PJD3_k127_2498129_0 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006465 337.0
PJD3_k127_2498129_1 PFAM NUDIX hydrolase K07455 - - 0.000000000000000000000000000007834 125.0
PJD3_k127_2498129_2 3-hydroxyacyl-CoA dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 0.0000006437 54.0
PJD3_k127_2512014_0 gluconolactonase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 351.0
PJD3_k127_2512014_1 ABC transporter substrate-binding protein K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 361.0
PJD3_k127_2512014_2 ABC-type amino acid transport system permease component K02029,K10002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 329.0
PJD3_k127_2512014_3 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004264 312.0
PJD3_k127_2512014_4 Major facilitator superfamily K08217 - - 0.000000000000000000000000000000000000000000000000000000000001866 228.0
PJD3_k127_2512014_5 amine dehydrogenase activity K13730 - - 0.00000000000000000000000000001042 132.0
PJD3_k127_2512014_6 Phospholipase/Carboxylesterase K06999 - - 0.00000000000000005929 81.0
PJD3_k127_254825_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 1.517e-260 833.0
PJD3_k127_254825_1 Peptidase U32 K08303 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 375.0
PJD3_k127_254825_10 Plasmid stability protein K21495 - - 0.0006747 52.0
PJD3_k127_254825_2 Peptidase U32 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 346.0
PJD3_k127_254825_3 Predicted integral membrane protein (DUF2189) - - - 0.000000000000000000000000000000000000000000000000000000002599 210.0
PJD3_k127_254825_4 lipid carrier protein - - - 0.000000000000000000000000000000000000000006494 172.0
PJD3_k127_254825_5 sister chromatid segregation - - - 0.000000000000000000000000000000000000000008373 171.0
PJD3_k127_254825_6 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000007517 153.0
PJD3_k127_254825_7 Protein of unknown function (DUF2788) - - - 0.0000000000000000000000007366 105.0
PJD3_k127_254825_8 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000004619 60.0
PJD3_k127_254825_9 cellulase activity - - - 0.00008724 54.0
PJD3_k127_2550782_0 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000013 186.0
PJD3_k127_2550782_1 Right handed beta helix region - - - 0.0000000000000000000000000000000000000000000001311 180.0
PJD3_k127_2555768_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 8.548e-289 918.0
PJD3_k127_2555768_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 572.0
PJD3_k127_2555768_2 Alcohol dehydrogenase GroES-like domain K00001 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 533.0
PJD3_k127_2555768_3 KR domain K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 297.0
PJD3_k127_2560350_0 carboxylase K01969,K13778 - 6.4.1.4,6.4.1.5 9.447e-308 948.0
PJD3_k127_2560350_1 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 4.725e-234 746.0
PJD3_k127_2560350_2 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 1.515e-208 660.0
PJD3_k127_2560350_3 Hypothetical methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 375.0
PJD3_k127_2560350_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000001012 219.0
PJD3_k127_2560350_5 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000001179 203.0
PJD3_k127_2560350_6 Biotin-requiring enzyme - - - 0.00000000000000000000000000000000000000206 153.0
PJD3_k127_2564417_0 Aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 464.0
PJD3_k127_2564417_1 PFAM SMP-30 Gluconolaconase LRE domain protein K01053,K14274 - 3.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000002232 250.0
PJD3_k127_2564417_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000128 246.0
PJD3_k127_2564417_3 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000004429 223.0
PJD3_k127_2588762_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.813e-232 734.0
PJD3_k127_2588762_1 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 533.0
PJD3_k127_2588762_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003593 419.0
PJD3_k127_2588762_3 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006093 419.0
PJD3_k127_2588762_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001261 278.0
PJD3_k127_2613148_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 499.0
PJD3_k127_2613148_1 PFAM HhH-GPD family protein K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000002032 258.0
PJD3_k127_2613148_2 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.0000000000000000000000000000000000000000000000007772 182.0
PJD3_k127_2613148_3 - - - - 0.000000000009657 66.0
PJD3_k127_2630161_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0 1073.0
PJD3_k127_2630161_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 3.161e-311 974.0
PJD3_k127_2630161_2 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007334 604.0
PJD3_k127_2630161_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 378.0
PJD3_k127_2630161_4 Phenazine biosynthesis-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001642 280.0
PJD3_k127_2637366_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 2.6e-209 664.0
PJD3_k127_2637366_1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 359.0
PJD3_k127_2637366_2 Converts GTP to 7,8-dihydroneopterin triphosphate K01495,K09007 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 304.0
PJD3_k127_2637366_3 Proton-conducting membrane transporter K12141 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003832 263.0
PJD3_k127_2637366_4 Belongs to the UPF0234 family K09767 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000125 252.0
PJD3_k127_2637366_5 NADH ubiquinone oxidoreductase 20 kDa subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007257 256.0
PJD3_k127_2637366_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000002857 163.0
PJD3_k127_2637366_7 COG2202 FOG PAS PAC domain - - - 0.00000000000000000000000000000003751 135.0
PJD3_k127_2637366_8 NAD dependent epimerase/dehydratase family - - - 0.000000000000000003822 86.0
PJD3_k127_2638434_0 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 1.575e-274 870.0
PJD3_k127_2638434_1 MlrC C-terminus - - - 2.869e-213 691.0
PJD3_k127_2638434_2 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 541.0
PJD3_k127_2638434_3 COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 322.0
PJD3_k127_2638434_4 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009261 310.0
PJD3_k127_2642292_0 Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 509.0
PJD3_k127_2642292_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 398.0
PJD3_k127_2642292_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005276 365.0
PJD3_k127_2642292_3 ATP-binding protein K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 310.0
PJD3_k127_2642292_4 ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003339 293.0
PJD3_k127_2642292_5 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001089 256.0
PJD3_k127_2642292_6 Beta-eliminating lyase K01620 - 4.1.2.48 0.00000000000000000000000002694 110.0
PJD3_k127_2645908_0 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006154 600.0
PJD3_k127_2645908_1 Aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 440.0
PJD3_k127_2645908_2 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008263 279.0
PJD3_k127_2645908_3 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.000000000000000000000000000000000000000000000000000003065 205.0
PJD3_k127_2645908_4 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000008526 82.0
PJD3_k127_2645975_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 1.904e-279 872.0
PJD3_k127_2651058_0 N-terminal domain of oxidoreductase K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 481.0
PJD3_k127_2651058_1 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008638 456.0
PJD3_k127_2651058_2 Electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000517 415.0
PJD3_k127_2651058_3 acyl-CoA dehydrogenase K20035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007402 265.0
PJD3_k127_2651058_4 MarR family - - - 0.0000000000000001725 86.0
PJD3_k127_2657883_0 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 496.0
PJD3_k127_2657883_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 484.0
PJD3_k127_2657883_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 457.0
PJD3_k127_2657883_3 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 417.0
PJD3_k127_2657883_4 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 365.0
PJD3_k127_2657883_5 Creatinine amidohydrolase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004511 314.0
PJD3_k127_2657883_6 Class II aldolase adducin family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007578 250.0
PJD3_k127_2665439_0 acetolactate synthase K01652 - 2.2.1.6 1.326e-305 949.0
PJD3_k127_2665439_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007538 581.0
PJD3_k127_2665439_2 Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000002207 278.0
PJD3_k127_2665439_3 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000001167 92.0
PJD3_k127_2665439_4 RNA polymerase K03088 - - 0.000000000001341 68.0
PJD3_k127_2675958_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 477.0
PJD3_k127_2699878_0 ammonium transporter K03320 - - 1.461e-224 713.0
PJD3_k127_2699878_1 Glutamate-cysteine ligase K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 608.0
PJD3_k127_2699878_10 Cupin 2, conserved barrel domain protein K00450,K00971,K09988,K11312 - 1.13.11.4,2.7.7.13,5.3.1.15 0.0000000000000000000000000000000000000000000000000000001618 199.0
PJD3_k127_2699878_11 pts system fructose subfamily IIa component K02821 - 2.7.1.194 0.00000000000000000000000000000000001509 140.0
PJD3_k127_2699878_12 PTS HPr component phosphorylation site - - - 0.00000000000000000000000000001762 121.0
PJD3_k127_2699878_13 Protein of unknown function (DUF3429) - - - 0.000000000000000000008431 97.0
PJD3_k127_2699878_14 Bacterial protein of unknown function (Gcw_chp) - - - 0.0004737 49.0
PJD3_k127_2699878_2 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008878 594.0
PJD3_k127_2699878_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 597.0
PJD3_k127_2699878_4 Glucose / Sorbosone dehydrogenase K00117,K21430 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016901,GO:0019842,GO:0030288,GO:0030313,GO:0031406,GO:0031975,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0044464,GO:0046872,GO:0048037,GO:0048038,GO:0055114,GO:0070968,GO:0097159,GO:1901363 1.1.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 462.0
PJD3_k127_2699878_5 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 389.0
PJD3_k127_2699878_6 Ribulose bisphosphate carboxylase large chain, catalytic domain K01601 - 4.1.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 297.0
PJD3_k127_2699878_7 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002114 267.0
PJD3_k127_2699878_8 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000005168 240.0
PJD3_k127_2699878_9 Belongs to the P(II) protein family K04751,K04752 - - 0.000000000000000000000000000000000000000000000000000000000000567 215.0
PJD3_k127_2706740_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 457.0
PJD3_k127_2706740_1 lipopolysaccharide heptosyltransferase I K02841,K12982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002085 385.0
PJD3_k127_2706740_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009255 307.0
PJD3_k127_2706740_3 Protein of unknown function (DUF4254) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003619 272.0
PJD3_k127_2706740_4 Sugar (and other) transporter - - - 0.0000000001699 62.0
PJD3_k127_2707237_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 4.736e-203 644.0
PJD3_k127_2707237_1 cytochrome c peroxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004653 482.0
PJD3_k127_2707237_2 Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000000000000000000000000001884 197.0
PJD3_k127_2707237_3 of the Major Facilitator Superfamily K08194 - - 0.00000000000000000000000000000000000000000005419 185.0
PJD3_k127_2707237_4 Bacterial SH3 domain homologues - - - 0.0000000000000000000000000000000000001062 150.0
PJD3_k127_2707237_5 - - - - 0.00000000000000000001332 98.0
PJD3_k127_2707237_6 Domain of unknown function (DUF1840) - - - 0.0000000000000002251 83.0
PJD3_k127_2707584_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1478.0
PJD3_k127_2707584_1 2Fe-2S iron-sulfur cluster binding domain K03863 - - 0.0 1414.0
PJD3_k127_2707584_10 bacterial OsmY and nodulation domain K04065 - - 0.00000000000000000000000003271 113.0
PJD3_k127_2707584_11 HlyD family secretion protein K02005 - - 0.00000001499 61.0
PJD3_k127_2707584_2 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 1.954e-229 737.0
PJD3_k127_2707584_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 533.0
PJD3_k127_2707584_4 (ABC) transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 359.0
PJD3_k127_2707584_5 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 341.0
PJD3_k127_2707584_6 Helix-hairpin-helix domain K04477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 321.0
PJD3_k127_2707584_7 Protein of unknown function, DUF480 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000956 254.0
PJD3_k127_2707584_8 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000000000000000000000000001055 204.0
PJD3_k127_2707584_9 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000001612 150.0
PJD3_k127_2716097_0 Tripartite tricarboxylate transporter TctA family - - - 4.196e-209 660.0
PJD3_k127_2716097_1 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 425.0
PJD3_k127_2716097_10 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.00002875 55.0
PJD3_k127_2716097_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004401 421.0
PJD3_k127_2716097_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002802 370.0
PJD3_k127_2716097_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007185 311.0
PJD3_k127_2716097_5 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000648 240.0
PJD3_k127_2716097_6 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000000000000000000009275 204.0
PJD3_k127_2716097_7 Cytochrome c-type biogenesis protein K02200 - - 0.00000000000000000000000000000000000000000001447 179.0
PJD3_k127_2716097_8 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000000000000000000000000000000005338 163.0
PJD3_k127_2716097_9 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000003071 131.0
PJD3_k127_2729598_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 1.056e-267 830.0
PJD3_k127_2729598_1 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007442 482.0
PJD3_k127_2733408_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 560.0
PJD3_k127_2733408_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 390.0
PJD3_k127_2733408_2 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000006086 240.0
PJD3_k127_2733899_0 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000005087 233.0
PJD3_k127_2733899_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000009199 229.0
PJD3_k127_2733899_2 bacterial OsmY and nodulation domain - - - 0.0000000000000000000000000000000000000000003481 170.0
PJD3_k127_2733899_3 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000001838 132.0
PJD3_k127_2733899_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.000001856 54.0
PJD3_k127_2734762_0 o-acetylhomoserine K01740 - 2.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 419.0
PJD3_k127_2734762_1 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 294.0
PJD3_k127_2734762_2 UPF0761 membrane protein K07058 - - 0.00000000000000000000000000000000000000000000000000333 199.0
PJD3_k127_2734762_3 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000001352 143.0
PJD3_k127_2734762_4 Predicted membrane protein (DUF2069) - - - 0.0000000000000000000000001335 111.0
PJD3_k127_2734762_5 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 GO:0002943,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000000001214 89.0
PJD3_k127_2736589_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 530.0
PJD3_k127_2737665_0 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006139,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009108,GO:0009117,GO:0009165,GO:0009308,GO:0009310,GO:0009435,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019441,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0020037,GO:0022607,GO:0034641,GO:0034654,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043648,GO:0043650,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046700,GO:0046874,GO:0046906,GO:0048037,GO:0051186,GO:0051188,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055086,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 430.0
PJD3_k127_2737665_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 384.0
PJD3_k127_2737665_2 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000002095 174.0
PJD3_k127_2745738_0 Sulfate transporter antisigma-factor antagonist STAS - - - 5.706e-200 646.0
PJD3_k127_2745738_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 484.0
PJD3_k127_2745738_2 Thioesterase superfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001776 229.0
PJD3_k127_2745738_3 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000005233 190.0
PJD3_k127_2745738_4 Major Facilitator Superfamily - - - 0.0001627 51.0
PJD3_k127_2752462_0 Permease family K02824 - - 4.75e-222 695.0
PJD3_k127_2752462_1 Belongs to the thiolase family K00626 - 2.3.1.9 6.6e-214 671.0
PJD3_k127_2752462_10 Domain of unknown function (DUF1850) - - - 0.000000000000000000000003116 107.0
PJD3_k127_2752462_11 LamB/YcsF family K07160 - - 0.00000000000001213 73.0
PJD3_k127_2752462_2 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004971 615.0
PJD3_k127_2752462_3 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 361.0
PJD3_k127_2752462_4 Allophanate hydrolase subunit 2 K06350 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 323.0
PJD3_k127_2752462_5 Domain of unknown function (DUF4010) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 309.0
PJD3_k127_2752462_6 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001965 276.0
PJD3_k127_2752462_7 Allophanate hydrolase subunit 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003956 248.0
PJD3_k127_2752462_8 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000002342 237.0
PJD3_k127_2752462_9 Type II secretion system (T2SS), protein F K02455,K12278 - - 0.0000000000000000000000000000000000000000000000000002048 188.0
PJD3_k127_2756188_0 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001971 537.0
PJD3_k127_2756188_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 309.0
PJD3_k127_2756188_2 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.000000000000000000000000000000000000000000000000000000000000008473 226.0
PJD3_k127_2756188_3 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000007088 170.0
PJD3_k127_2768897_0 TIGRFAM Acetoacetyl-CoA synthase K01907 - 6.2.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 575.0
PJD3_k127_2768897_1 Permeases of the drug metabolite transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 319.0
PJD3_k127_2768897_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007283 291.0
PJD3_k127_2782731_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 373.0
PJD3_k127_2782731_1 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000001371 196.0
PJD3_k127_2782731_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000003264 177.0
PJD3_k127_2782731_3 - - - - 0.0000259 53.0
PJD3_k127_2800447_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 3.903e-242 787.0
PJD3_k127_2800447_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.354e-207 660.0
PJD3_k127_2800447_10 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000000001433 192.0
PJD3_k127_2800447_11 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000004679 144.0
PJD3_k127_2800447_12 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000001351 124.0
PJD3_k127_2800447_2 Cell shape determining protein, MreB Mrl family K03569 - - 5.726e-204 638.0
PJD3_k127_2800447_3 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007757 485.0
PJD3_k127_2800447_4 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 426.0
PJD3_k127_2800447_5 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 407.0
PJD3_k127_2800447_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 327.0
PJD3_k127_2800447_7 ChrR Cupin-like domain K05913 - 1.13.11.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 296.0
PJD3_k127_2800447_8 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003059 291.0
PJD3_k127_2800447_9 Rod shape-determining protein MreD K03571 - - 0.00000000000000000000000000000000000000000000000000000000000001864 218.0
PJD3_k127_2810170_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0 1022.0
PJD3_k127_2810170_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 2.709e-203 643.0
PJD3_k127_2810170_10 Cytochrome c K16966,K17049,K17052 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000001971 138.0
PJD3_k127_2810170_11 CRS1_YhbY K07574 - - 0.0000000000000000000000000001155 123.0
PJD3_k127_2810170_12 - - - - 0.000000007477 68.0
PJD3_k127_2810170_13 - - - - 0.00000002586 57.0
PJD3_k127_2810170_14 - - - - 0.0002294 44.0
PJD3_k127_2810170_2 Carbamoyl-phosphate synthetase ammonia chain K01955 - 6.3.5.5 1.512e-200 631.0
PJD3_k127_2810170_3 Uncharacterized protein conserved in bacteria (DUF2219) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007527 467.0
PJD3_k127_2810170_4 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 396.0
PJD3_k127_2810170_5 Pterin binding enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 317.0
PJD3_k127_2810170_6 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009904 291.0
PJD3_k127_2810170_7 sister chromatid segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005194 254.0
PJD3_k127_2810170_8 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000000000000000001059 236.0
PJD3_k127_2810170_9 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000000004151 224.0
PJD3_k127_281326_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008907 605.0
PJD3_k127_281326_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 293.0
PJD3_k127_281326_2 in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000002539 179.0
PJD3_k127_2815664_0 Phosphoglucomutase K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007463 559.0
PJD3_k127_2815664_1 PFAM ABC transporter related K09691 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 473.0
PJD3_k127_2815664_2 PFAM ABC transporter related K09691 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005708 319.0
PJD3_k127_2815664_3 ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005268 258.0
PJD3_k127_2815664_4 Bacterial transferase hexapeptide (six repeats) - - - 0.00000000000000000006912 104.0
PJD3_k127_2817449_0 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 589.0
PJD3_k127_2817449_1 AlkA N-terminal domain K13529 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000001679 199.0
PJD3_k127_2838357_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 - 2.3.3.9 0.0 1098.0
PJD3_k127_2838357_1 D-galactarate dehydratase K16846,K16850 - 4.2.1.7,4.4.1.24 2.029e-208 652.0
PJD3_k127_2838357_10 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00247 - - 0.00000000000000000000000000000000000007061 160.0
PJD3_k127_2838357_11 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000006836 123.0
PJD3_k127_2838357_12 succinate dehydrogenase K00246 - - 0.00000000000000000000004964 102.0
PJD3_k127_2838357_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 578.0
PJD3_k127_2838357_3 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00245 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 381.0
PJD3_k127_2838357_4 Belongs to the LDH2 MDH2 oxidoreductase family K16844 - 1.1.1.338 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 387.0
PJD3_k127_2838357_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058,K16843 - 1.1.1.310,1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 357.0
PJD3_k127_2838357_6 Sir2 family K12410 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 318.0
PJD3_k127_2838357_7 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000001896 220.0
PJD3_k127_2838357_8 translation initiation inhibitor, yjgF family - - - 0.00000000000000000000000000000000000000000000000002683 190.0
PJD3_k127_2838357_9 SAF domain K16845 - 4.4.1.24 0.00000000000000000000000000000000000000001837 154.0
PJD3_k127_2846733_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 531.0
PJD3_k127_2846733_1 PFAM Cupin 4 family protein K18850 - 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 367.0
PJD3_k127_2846733_2 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000343 162.0
PJD3_k127_286011_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 407.0
PJD3_k127_286011_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 328.0
PJD3_k127_286011_2 PFAM Acyl-CoA dehydrogenase K11731 - - 0.00000000002526 64.0
PJD3_k127_2906156_0 PFAM amidohydrolase K01464,K01466 - 3.5.2.2,3.5.2.5 3.56e-281 871.0
PJD3_k127_2906156_1 3-isopropylmalate dehydratase large subunit K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 396.0
PJD3_k127_2906156_2 Belongs to the LeuD family K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000003087 220.0
PJD3_k127_2906156_3 FAD binding domain K00244 - 1.3.5.4 0.000000000000000000000000000000000000000000000000000002419 215.0
PJD3_k127_29123_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 1.378e-248 774.0
PJD3_k127_29123_1 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 304.0
PJD3_k127_29123_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 298.0
PJD3_k127_29123_3 acetyltransferase K11206 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006036 301.0
PJD3_k127_29123_4 RNA-binding S4 domain-containing protein K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000245 280.0
PJD3_k127_29123_5 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000033 281.0
PJD3_k127_29123_6 5,10-methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000004444 230.0
PJD3_k127_29123_7 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000000000000000000000000000000000000000000001497 185.0
PJD3_k127_29123_8 Helix-hairpin-helix motif - - - 0.0000000000000000001643 97.0
PJD3_k127_2915153_0 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 518.0
PJD3_k127_2915153_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 372.0
PJD3_k127_2915153_2 Nad-dependent epimerase dehydratase K22025 - 1.1.1.410 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 369.0
PJD3_k127_2915153_3 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001545 280.0
PJD3_k127_2915153_4 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000000000000000000000009079 222.0
PJD3_k127_2915153_5 Protein of unknown function (DUF3025) - - - 0.00000000000000000000000000000000000000000000000000003624 207.0
PJD3_k127_2915153_6 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.0000000000000000000000000000000001969 140.0
PJD3_k127_2915153_7 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.0000000000000001194 85.0
PJD3_k127_291941_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 5.631e-241 769.0
PJD3_k127_291941_1 Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily K03430 - 2.6.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000981 500.0
PJD3_k127_291941_2 Iron-containing alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000002337 169.0
PJD3_k127_2924447_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 6.413e-251 783.0
PJD3_k127_2924447_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 475.0
PJD3_k127_2924447_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 434.0
PJD3_k127_2924447_3 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.000000000000000000000000000000000000000000008454 179.0
PJD3_k127_2939102_0 4Fe-4S dicluster domain - - - 6.205e-281 876.0
PJD3_k127_2939102_1 Aminotransferase K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 2.809e-199 630.0
PJD3_k127_2939102_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009138 272.0
PJD3_k127_2939192_0 Transposase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 555.0
PJD3_k127_2939192_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 361.0
PJD3_k127_2939192_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000533 246.0
PJD3_k127_2939192_3 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000171 202.0
PJD3_k127_2939192_4 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000000000000000000001001 149.0
PJD3_k127_2939192_5 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.000000000000000000000000003964 110.0
PJD3_k127_2943825_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0 1255.0
PJD3_k127_2943825_1 LUD domain K18929 - - 4.24e-221 696.0
PJD3_k127_2943825_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009724 399.0
PJD3_k127_2943825_3 Cysteine-rich domain K18928 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 355.0
PJD3_k127_2943825_4 Belongs to the peptidase S11 family K07262 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 348.0
PJD3_k127_2943825_5 FAD dependent oxidoreductase K00303 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000001436 225.0
PJD3_k127_2943825_6 PFAM molybdopterin binding domain - - - 0.00000000000000000000000000000000000000000000008883 172.0
PJD3_k127_2943825_7 Phasin protein - - - 0.000000000000000000000005814 111.0
PJD3_k127_2946608_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 566.0
PJD3_k127_2946608_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 552.0
PJD3_k127_2946608_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000003389 221.0
PJD3_k127_2946608_3 LysM domain K08086 - - 0.00000000000000000000000000000000000000004041 160.0
PJD3_k127_2963441_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 1.86e-240 762.0
PJD3_k127_2963441_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 3.999e-218 681.0
PJD3_k127_2963441_10 Phosphoglycerate mutase K15634 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000589 216.0
PJD3_k127_2963441_11 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000669 206.0
PJD3_k127_2963441_12 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000009278 186.0
PJD3_k127_2963441_13 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000008891 148.0
PJD3_k127_2963441_14 Protein of unknown function (DUF541) - - - 0.00000000000000000000000000001591 128.0
PJD3_k127_2963441_2 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 501.0
PJD3_k127_2963441_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009769 488.0
PJD3_k127_2963441_4 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 458.0
PJD3_k127_2963441_5 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 311.0
PJD3_k127_2963441_6 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 301.0
PJD3_k127_2963441_7 riboflavin synthase alpha K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000004392 263.0
PJD3_k127_2963441_8 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000000114 222.0
PJD3_k127_2963441_9 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.00000000000000000000000000000000000000000000000000000000004138 208.0
PJD3_k127_2969692_0 NADH:flavin oxidoreductase / NADH oxidase family K00354 - 1.6.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 525.0
PJD3_k127_2969692_1 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003144 396.0
PJD3_k127_2969692_2 Methyltransferase domain - - - 0.00000000000000000002115 99.0
PJD3_k127_2974990_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004492 496.0
PJD3_k127_2974990_1 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.00000000000000000000000000000000000716 138.0
PJD3_k127_3018717_0 Psort location Cytoplasmic, score 7.50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 508.0
PJD3_k127_3018717_1 Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 359.0
PJD3_k127_3035004_0 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 583.0
PJD3_k127_3035004_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 555.0
PJD3_k127_3035004_10 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000006798 138.0
PJD3_k127_3035004_11 Acyl-CoA thioesterase K07107 - - 0.0000000000000000000000000000006076 127.0
PJD3_k127_3035004_2 PFAM MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 307.0
PJD3_k127_3035004_3 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001611 271.0
PJD3_k127_3035004_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005047 271.0
PJD3_k127_3035004_5 NQR2, RnfD, RnfE family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002918 252.0
PJD3_k127_3035004_6 Involved in the TonB-independent uptake of proteins K03641 - - 0.0000000000000000000000000000000000000000000000000000000000000005556 234.0
PJD3_k127_3035004_7 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000008227 217.0
PJD3_k127_3035004_8 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000002216 142.0
PJD3_k127_3035004_9 TIGRFAM protein TolA K03646 - - 0.0000000000000000000000000000000001716 147.0
PJD3_k127_3042819_0 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 9.916e-209 654.0
PJD3_k127_3042819_1 PFAM PhoH family protein K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003227 259.0
PJD3_k127_3046593_0 AMP-binding enzyme K00666,K02182 - 6.2.1.48 2.335e-215 681.0
PJD3_k127_3046593_1 COG2951 Membrane-bound lytic murein transglycosylase B - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 546.0
PJD3_k127_3046593_2 Glutathione S-transferase, C-terminal domain K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005665 305.0
PJD3_k127_3047893_0 glycosyl transferase family 8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 499.0
PJD3_k127_3047893_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008838 414.0
PJD3_k127_3047893_2 Glycosyl transferase, family 4 K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 359.0
PJD3_k127_3047893_3 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 340.0
PJD3_k127_3047893_4 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 324.0
PJD3_k127_3047893_5 Glycosyl transferase family 2 K12990 - - 0.000000000000000000000000000000000000000000000000000000000000000000003021 249.0
PJD3_k127_3047893_6 Glycosyltransferase like family 2 K07011 - - 0.0000000000000000000000000000000000000000000000000000000000001271 223.0
PJD3_k127_3047893_7 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 0.0000000004122 62.0
PJD3_k127_307141_0 Phosphoribulokinase / Uridine kinase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 481.0
PJD3_k127_307141_1 Fructose-1-6-bisphosphatase, N-terminal domain K01086,K03841 - 3.1.3.11,3.1.3.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 476.0
PJD3_k127_307141_2 HAD-superfamily hydrolase subfamily IA, variant 3 - - - 0.0000000000000000000000000000000000000000001111 176.0
PJD3_k127_3084624_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1049.0
PJD3_k127_3084624_1 Belongs to the thiolase family K00632 - 2.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000002764 242.0
PJD3_k127_3084624_2 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.0000000000000000000000000000000000000000000001956 173.0
PJD3_k127_3084624_3 PFAM acyl-CoA dehydrogenase domain protein - - - 0.000000003156 57.0
PJD3_k127_3109444_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 3.302e-251 783.0
PJD3_k127_3109444_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 308.0
PJD3_k127_3109444_2 Belongs to the transcriptional regulatory Fis family K03557 - - 0.0000000000000000000004145 108.0
PJD3_k127_3113800_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 4.092e-261 807.0
PJD3_k127_3113800_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 2.576e-251 778.0
PJD3_k127_3151594_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895 - 6.2.1.1 7.752e-229 722.0
PJD3_k127_3151594_1 Lytic transglycosylase K08307 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003686 539.0
PJD3_k127_3151594_10 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000001668 133.0
PJD3_k127_3151594_11 Staphylococcal nuclease homologues - - - 0.000000000000000001281 87.0
PJD3_k127_3151594_12 Resolvase, N terminal domain - - - 0.0000006155 51.0
PJD3_k127_3151594_2 PFAM Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002447 446.0
PJD3_k127_3151594_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 423.0
PJD3_k127_3151594_4 Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000272 320.0
PJD3_k127_3151594_5 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 305.0
PJD3_k127_3151594_6 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000004028 258.0
PJD3_k127_3151594_7 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000002322 242.0
PJD3_k127_3151594_8 aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000001611 213.0
PJD3_k127_3151594_9 Integrase core domain K07497 - - 0.0000000000000000000000000000000001109 133.0
PJD3_k127_3189540_0 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001467 317.0
PJD3_k127_3189540_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000002094 146.0
PJD3_k127_3189540_2 PFAM Bacterial regulatory protein, arsR family K22298 - - 0.00000000000000000000000000004739 120.0
PJD3_k127_3194405_0 ATP synthase A chain K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006066 302.0
PJD3_k127_3194405_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000001006 257.0
PJD3_k127_3194405_2 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K02114 - - 0.000000000000000000000000000000000001069 144.0
PJD3_k127_3194405_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000008667 137.0
PJD3_k127_3194405_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000003533 115.0
PJD3_k127_3194405_5 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000000000000000000000003442 113.0
PJD3_k127_3205938_0 ABC transporter K06147,K18893 - - 3.847e-246 780.0
PJD3_k127_3205938_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 313.0
PJD3_k127_3205938_2 Bacterial extracellular solute-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000001025 228.0
PJD3_k127_3205938_3 Cytochrome C biogenesis protein - - - 0.000000000000001526 83.0
PJD3_k127_325175_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 504.0
PJD3_k127_325175_1 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000001767 194.0
PJD3_k127_325175_2 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000001804 115.0
PJD3_k127_325926_0 Glycosyl transferase, family 2 K13057 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0016740,GO:0016757,GO:0030312,GO:0044464,GO:0071944 2.4.1.245 0.00006153 53.0
PJD3_k127_3292986_0 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 GO:0000302,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0020037,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042737,GO:0042743,GO:0042744,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046906,GO:0048037,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070301,GO:0070887,GO:0071236,GO:0072593,GO:0097159,GO:0097237,GO:0098754,GO:0098869,GO:1901363,GO:1901700,GO:1901701,GO:1990748 1.11.1.21 0.0 1160.0
PJD3_k127_3292986_1 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 572.0
PJD3_k127_3292986_11 - - - - 0.000000000003833 75.0
PJD3_k127_3292986_12 Belongs to the glycosyl hydrolase 2 family - - - 0.0004789 52.0
PJD3_k127_3292986_2 LysR substrate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002986 275.0
PJD3_k127_3292986_3 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000001014 265.0
PJD3_k127_3292986_4 PFAM NnrUfamily protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000148 257.0
PJD3_k127_3292986_5 Phosphoglycerate mutase family K15634 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000386 237.0
PJD3_k127_3292986_6 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000002343 214.0
PJD3_k127_3292986_7 Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine K01754 - 4.3.1.19 0.0000000000000000000000000000000000988 135.0
PJD3_k127_3292986_8 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000004086 107.0
PJD3_k127_3292986_9 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000001692 101.0
PJD3_k127_3297040_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1206.0
PJD3_k127_3297040_1 Indolepyruvate ferredoxin oxidoreductase K00179 - 1.2.7.8 5.003e-233 729.0
PJD3_k127_3297040_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 382.0
PJD3_k127_3297040_3 Belongs to the 'phage' integrase family - - - 0.00005332 45.0
PJD3_k127_3305396_0 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004659 383.0
PJD3_k127_3305396_1 nitrogen regulation protein K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000007897 219.0
PJD3_k127_3305396_2 - - - - 0.00000000000000000000000003832 113.0
PJD3_k127_3315197_0 Protein of unknown function - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 453.0
PJD3_k127_3315197_1 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 377.0
PJD3_k127_3315197_2 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 376.0
PJD3_k127_3318130_0 ribonuclease II K01147 - 3.1.13.1 1.833e-204 667.0
PJD3_k127_3318130_1 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 531.0
PJD3_k127_3318130_2 periplasmic protein TonB K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 322.0
PJD3_k127_3318130_3 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000007267 291.0
PJD3_k127_3318130_4 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009802 274.0
PJD3_k127_3318130_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000000000007503 277.0
PJD3_k127_3321022_0 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 556.0
PJD3_k127_3321022_1 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 492.0
PJD3_k127_3321022_2 Amino-transferase class IV K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 453.0
PJD3_k127_3321022_3 Asparaginase K13051 - 3.4.19.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 368.0
PJD3_k127_3321022_4 Glutathione S-transferase, C-terminal domain K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 362.0
PJD3_k127_3321022_5 COG1126 ABC-type polar amino acid transport system, ATPase component K02028,K09972,K10004 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006054 362.0
PJD3_k127_3321022_6 HNH nucleases - - - 0.000000000000000000000000000000000000000000000009144 173.0
PJD3_k127_3323457_0 acetyl-coa acetyltransferase - - - 4.824e-215 671.0
PJD3_k127_3323457_1 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000001425 169.0
PJD3_k127_3323457_2 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K02182 - 6.2.1.48 0.00000000000000000000134 94.0
PJD3_k127_332609_0 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 464.0
PJD3_k127_332609_1 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000611 320.0
PJD3_k127_332609_2 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003402 282.0
PJD3_k127_332609_3 Flavocytochrome c sulphide dehydrogenase, flavin-binding K05301,K17218 - 1.8.2.1,1.8.5.4 0.000000000000000000000001739 106.0
PJD3_k127_332609_4 bond formation protein DsbB K03611 - - 0.0000000000000000000007077 103.0
PJD3_k127_332609_5 PFAM DinB family - - - 0.000005792 49.0
PJD3_k127_3327589_0 signal transduction histidine kinase K07678 - 2.7.13.3 9.88e-199 666.0
PJD3_k127_3327589_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000009863 223.0
PJD3_k127_3327589_2 SMART cyclic nucleotide-binding K10914 - - 0.000000000000000000000003969 110.0
PJD3_k127_3341798_0 Histidine kinase K02487,K06596 - - 0.0 1185.0
PJD3_k127_3341798_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K02660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 587.0
PJD3_k127_3341798_2 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 376.0
PJD3_k127_3341798_3 cheY-homologous receiver domain K02657 - - 0.000000000000000000000000000000000000000000000000000000000005845 209.0
PJD3_k127_3341798_4 Chase2 domain K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000007158 200.0
PJD3_k127_3341798_5 cheY-homologous receiver domain K02658 - - 0.000000000000000000000000000000000000000000000008289 181.0
PJD3_k127_3341798_6 Belongs to the N-Me-Phe pilin family K02650 - - 0.0000000000000000000000000000000000004681 151.0
PJD3_k127_3341798_7 Chemotaxis signal transduction protein K02659 - - 0.00000000000000000000000000000008998 138.0
PJD3_k127_3341798_8 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000000000000001675 121.0
PJD3_k127_3344240_0 DNA helicase K03654 - 3.6.4.12 6.917e-262 823.0
PJD3_k127_3344240_1 sulphate transporter K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 431.0
PJD3_k127_3353927_0 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000000000000000000004549 213.0
PJD3_k127_3353927_1 deoxyhypusine monooxygenase activity K05384,K05386 - - 0.00000000000000000000000000000000000000000000000007203 187.0
PJD3_k127_3357413_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688,K18786 GO:0003674,GO:0003824,GO:0016740,GO:0016757 2.4.1.321 0.0 1658.0
PJD3_k127_3360009_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 6.044e-212 672.0
PJD3_k127_3360009_1 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007289 407.0
PJD3_k127_3360009_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009348 352.0
PJD3_k127_3360009_3 Rossmann-like domain K06988 - 1.5.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 287.0
PJD3_k127_3360009_4 DSBA-like thioredoxin domain K14584 - 5.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001517 258.0
PJD3_k127_3360009_5 Ppx GppA phosphatase - - - 0.000000000000000003097 90.0
PJD3_k127_3361656_0 nitrogen regulation protein K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002525 367.0
PJD3_k127_3361656_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 353.0
PJD3_k127_3361656_2 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000001153 207.0
PJD3_k127_3384190_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 4.936e-273 846.0
PJD3_k127_3384190_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000000003439 84.0
PJD3_k127_3384479_0 KR domain K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000576 387.0
PJD3_k127_3384479_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 387.0
PJD3_k127_3384479_2 Pyridine nucleotide-disulphide oxidoreductase K05297 - 1.18.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 357.0
PJD3_k127_3384479_3 Ferrous iron transport protein B K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000001481 248.0
PJD3_k127_3384479_4 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000009706 244.0
PJD3_k127_3384479_5 Rubredoxin - - - 0.0000000000000000000000006826 104.0
PJD3_k127_3388562_0 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007168 579.0
PJD3_k127_3388562_1 BT1 family - - - 0.0000000000000000000000000000000000000000000000008402 176.0
PJD3_k127_3388562_2 Metal-dependent amidase aminoacylase carboxypeptidase - - - 0.000002852 60.0
PJD3_k127_3390308_0 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 522.0
PJD3_k127_3390308_1 Peptidase M16 inactive domain K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 470.0
PJD3_k127_3390308_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 425.0
PJD3_k127_3390308_3 RNA polymerase sigma factor RpoH K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003909 393.0
PJD3_k127_3390308_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000001441 231.0
PJD3_k127_3390308_5 Methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000642 179.0
PJD3_k127_3390308_6 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000001105 156.0
PJD3_k127_3390308_7 Belongs to the GPAT DAPAT family K00631 GO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0031224,GO:0031226,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.3.1.15 0.0000000000000000000000000000000001536 143.0
PJD3_k127_3390308_8 COGs COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000000000000000005036 150.0
PJD3_k127_3394102_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000002769 253.0
PJD3_k127_3394102_1 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.000000000000000000000000000000000000000000000001439 175.0
PJD3_k127_3394102_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000007741 152.0
PJD3_k127_3398099_0 TIGRFAM phenylacetate-CoA oxygenase reductase, PaaK subunit K02613 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 514.0
PJD3_k127_3398099_1 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 486.0
PJD3_k127_3398099_2 PFAM regulatory protein TetR K09017 - - 0.000000000000000000000000000000000000000000000000000001099 199.0
PJD3_k127_3398099_3 TIGRFAM phenylacetate-CoA oxygenase, PaaJ subunit K02612 - - 0.0000000000000000000000000000000000000001497 152.0
PJD3_k127_3398099_4 PFAM Cys Met metabolism K01740 - 2.5.1.49 0.00000000002032 64.0
PJD3_k127_3398099_5 EF-hand domain pair - - - 0.0008026 49.0
PJD3_k127_3407511_0 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 591.0
PJD3_k127_3407511_1 Malate/L-lactate dehydrogenase K00016,K00073 - 1.1.1.27,1.1.1.350 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 419.0
PJD3_k127_3407511_2 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007339 409.0
PJD3_k127_3407511_3 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K22229 - 1.1.1.215 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005767 312.0
PJD3_k127_3407511_4 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 301.0
PJD3_k127_3407511_5 Enoyl-(Acyl carrier protein) reductase K21883 - 1.1.1.401 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 311.0
PJD3_k127_3407511_6 CNP1-like family - - - 0.000000000000000008223 86.0
PJD3_k127_3417022_0 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 411.0
PJD3_k127_3417022_1 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 405.0
PJD3_k127_3417022_2 cytochrome c oxidase (Subunit II) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 311.0
PJD3_k127_3417022_3 Cytochrome b(N-terminal)/b6/petB - - - 0.0000000000000000001457 90.0
PJD3_k127_3417022_4 - - - - 0.000000000005194 74.0
PJD3_k127_3422537_0 SAF - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 510.0
PJD3_k127_3422537_1 Patatin-like phospholipase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 331.0
PJD3_k127_3422537_2 Bacterial transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001066 269.0
PJD3_k127_3422537_3 PFAM poly granule associated family protein - - - 0.0000000000000000000000000000000001185 140.0
PJD3_k127_3422537_4 Male sterility protein - - - 0.0000000003744 61.0
PJD3_k127_3425920_0 Cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004997 505.0
PJD3_k127_3425920_1 Protein of unknown function (DUF3422) - - - 0.000000000000000000000000000000000000001626 152.0
PJD3_k127_3425920_2 short-chain dehydrogenase - - - 0.00000000000000000001925 91.0
PJD3_k127_3432401_0 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 466.0
PJD3_k127_3432401_1 pfam abc1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 381.0
PJD3_k127_3432401_2 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000001563 189.0
PJD3_k127_3434166_0 Domain of unknown function (DUF3400) - - - 8.017e-235 731.0
PJD3_k127_3434166_1 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 589.0
PJD3_k127_3434166_10 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000005796 190.0
PJD3_k127_3434166_11 Transcriptional regulator K07734 - - 0.0000000000000000000000000000000000000000000002347 181.0
PJD3_k127_3434166_12 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.0000000000000000000000000000000000000000000009898 177.0
PJD3_k127_3434166_13 protein conserved in bacteria K03690 - - 0.000000000000000000000000003056 119.0
PJD3_k127_3434166_2 C4-dicarboxylate ABC transporter K11688 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 472.0
PJD3_k127_3434166_3 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 384.0
PJD3_k127_3434166_4 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005679 363.0
PJD3_k127_3434166_5 mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005398 320.0
PJD3_k127_3434166_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00046 - 1.1.1.69 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 316.0
PJD3_k127_3434166_7 import inner membrane translocase, subunit Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001867 276.0
PJD3_k127_3434166_8 Membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000004099 241.0
PJD3_k127_3434166_9 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.0000000000000000000000000000000000000000000000000000000002773 208.0
PJD3_k127_3434277_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 0.0 1297.0
PJD3_k127_3434277_1 Protein of unknown function (DUF2863) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 430.0
PJD3_k127_3434277_2 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 337.0
PJD3_k127_3434277_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 312.0
PJD3_k127_3434277_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000002872 283.0
PJD3_k127_3434277_5 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.0000000000005641 76.0
PJD3_k127_3434277_6 Sulfur oxidation protein SoxY K17226 - - 0.000001478 60.0
PJD3_k127_3442632_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K00266 - 1.4.1.13,1.4.1.14 5.042e-252 784.0
PJD3_k127_3442632_1 Glutathione S-transferase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000009226 233.0
PJD3_k127_3442632_2 glutamate synthase, alpha subunit domain protein K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.00000000000000000000000000000000000000000000000000000000000000001095 227.0
PJD3_k127_3443882_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 5.777e-266 825.0
PJD3_k127_3443882_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 596.0
PJD3_k127_3443882_2 Beta-Casp domain K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 374.0
PJD3_k127_3443882_3 HDOD domain - - - 0.00000000000000000000000000000000000002016 158.0
PJD3_k127_3460441_0 acyl-CoA dehydrogenase - - - 3.912e-288 900.0
PJD3_k127_3460441_1 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000002299 96.0
PJD3_k127_346330_0 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K05816,K10111,K10112 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 533.0
PJD3_k127_346330_1 PFAM binding-protein-dependent transport systems inner membrane component K05814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007933 489.0
PJD3_k127_346330_2 probably responsible for the translocation of the substrate across the membrane K02026,K05815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 479.0
PJD3_k127_346330_3 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000005835 79.0
PJD3_k127_3491716_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 1.664e-208 659.0
PJD3_k127_3491716_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 1.669e-208 661.0
PJD3_k127_3491716_10 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.000006386 53.0
PJD3_k127_3491716_2 Peptidogalycan biosysnthesis/recognition K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 443.0
PJD3_k127_3491716_3 HI0933 family K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000771 413.0
PJD3_k127_3491716_4 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 356.0
PJD3_k127_3491716_5 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002187 306.0
PJD3_k127_3491716_6 HemY protein N-terminus K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001144 266.0
PJD3_k127_3491716_7 Belongs to the P(II) protein family K04751,K04752 - - 0.00000000000000000000000000000000000000000000000000000001506 198.0
PJD3_k127_3491716_8 enzyme of heme biosynthesis K02496,K13543 - 2.1.1.107,4.2.1.75 0.00000000000000000000000000000000000000000000003867 188.0
PJD3_k127_3492865_0 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 2.941e-233 741.0
PJD3_k127_3492865_1 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 3.717e-211 664.0
PJD3_k127_3492865_10 NMT1-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008834 338.0
PJD3_k127_3492865_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000111 261.0
PJD3_k127_3492865_12 Phosphoglycerate mutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005562 257.0
PJD3_k127_3492865_13 ABC-type tungstate transport system, periplasmic component K05773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001385 248.0
PJD3_k127_3492865_14 PBP superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000158 233.0
PJD3_k127_3492865_15 ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000000007774 215.0
PJD3_k127_3492865_16 Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate K06989 - 1.4.1.21 0.0000000000000000000000000000000000000000000000000000003048 211.0
PJD3_k127_3492865_17 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000003817 181.0
PJD3_k127_3492865_18 Glycine-zipper domain - - - 0.000000000000000000000000000000000000000000001314 171.0
PJD3_k127_3492865_19 PspC domain - - - 0.000000000000000000000005582 107.0
PJD3_k127_3492865_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 3.712e-209 668.0
PJD3_k127_3492865_20 - - - - 0.000000000000002676 83.0
PJD3_k127_3492865_3 MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 578.0
PJD3_k127_3492865_4 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 546.0
PJD3_k127_3492865_5 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 480.0
PJD3_k127_3492865_6 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K21624 - 4.2.1.171 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005724 477.0
PJD3_k127_3492865_7 racemase activity, acting on amino acids and derivatives - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 396.0
PJD3_k127_3492865_8 Belongs to the mandelate racemase muconate lactonizing enzyme family K01856 - 5.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002782 382.0
PJD3_k127_3492865_9 COG2998 ABC-type tungstate transport system, permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008714 344.0
PJD3_k127_3502259_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1105.0
PJD3_k127_3502259_1 Cys/Met metabolism PLP-dependent enzyme K01739,K01758,K01760,K01761 - 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.8 8.57e-208 651.0
PJD3_k127_3502259_2 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 377.0
PJD3_k127_3502259_3 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 305.0
PJD3_k127_3502488_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 3.038e-220 697.0
PJD3_k127_3502488_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004165 437.0
PJD3_k127_3502488_2 Phosphotransferase enzyme family K00899 - 2.7.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 348.0
PJD3_k127_3502488_3 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 305.0
PJD3_k127_3502488_4 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000009839 203.0
PJD3_k127_3502488_5 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000003362 150.0
PJD3_k127_3502488_6 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000004959 69.0
PJD3_k127_3510328_0 NADH ubiquinone plastoquinone (Complex I) - - - 3e-323 1005.0
PJD3_k127_3510328_1 ABC transporter K15738 - - 3.107e-234 744.0
PJD3_k127_3510328_2 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 5.394e-216 676.0
PJD3_k127_3510328_3 Proton-conducting membrane transporter K12141 - - 1.644e-195 614.0
PJD3_k127_3510328_4 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 490.0
PJD3_k127_3510328_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001593 240.0
PJD3_k127_3510328_6 hydrogenase 4 membrane K12140 - - 0.000000000000000000000000000000000000000000000000000005977 197.0
PJD3_k127_3539152_0 PFAM D-galactarate dehydratase Altronate hydrolase domain protein K01685,K01708,K16846 - 4.2.1.42,4.2.1.7,4.4.1.24 1.66e-215 681.0
PJD3_k127_3539152_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 537.0
PJD3_k127_3539152_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K19802 - 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006584 522.0
PJD3_k127_3539152_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 506.0
PJD3_k127_3539152_4 Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 440.0
PJD3_k127_3539152_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000000000000000000000009806 177.0
PJD3_k127_3539152_6 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000000002732 153.0
PJD3_k127_3539152_7 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000003512 152.0
PJD3_k127_3539152_8 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.0000000000000000000000000002665 115.0
PJD3_k127_3550880_0 Belongs to the UPF0276 family K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003612 386.0
PJD3_k127_3550880_1 Putative DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000379 240.0
PJD3_k127_3550880_2 DoxX K15977 - - 0.00000000000000000000000000000000000000000000000000000001058 206.0
PJD3_k127_3550880_3 the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription K03088 - - 0.00000000000000000000000000000000000000000000000000000008506 200.0
PJD3_k127_3550880_4 Protein of unknown function (DUF1109) - - - 0.00000000000000000000000000000000000000000000005015 186.0
PJD3_k127_3550880_5 Predicted integral membrane protein (DUF2282) - - - 0.0000000000000000000000000000000006967 134.0
PJD3_k127_3550880_6 TIGRFAM phasin family protein - - - 0.0000000000000000000000001716 112.0
PJD3_k127_3551973_0 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007128 442.0
PJD3_k127_3551973_1 Heat shock 70 kDa protein K04043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 331.0
PJD3_k127_3551973_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000001621 195.0
PJD3_k127_3551973_3 NIPSNAP - - - 0.000000000000000000000000000000000000001487 149.0
PJD3_k127_3551973_4 SnoaL-like domain K06893 - - 0.00000000000000000000000000000001415 133.0
PJD3_k127_358245_0 Belongs to the ABC transporter superfamily K02031,K02032,K13896 - - 1.784e-203 649.0
PJD3_k127_358245_1 PFAM binding-protein-dependent transport systems inner membrane component K13895 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 529.0
PJD3_k127_358245_2 PFAM binding-protein-dependent transport systems inner membrane component K13894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003438 418.0
PJD3_k127_358245_3 EamA-like transporter family - - - 0.000000000000000000000000000004136 123.0
PJD3_k127_3607468_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1099.0
PJD3_k127_3607468_1 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000007747 175.0
PJD3_k127_3626718_0 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004157 509.0
PJD3_k127_3626718_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000913 503.0
PJD3_k127_3626718_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 444.0
PJD3_k127_3633198_0 Aminotransferase K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 602.0
PJD3_k127_3633198_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009361 459.0
PJD3_k127_3633198_2 Phosphate transporter K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 327.0
PJD3_k127_3633198_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005247 316.0
PJD3_k127_3633198_4 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004223 273.0
PJD3_k127_3633198_5 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000000000000000000007896 200.0
PJD3_k127_3633198_6 Part of a membrane complex involved in electron transport K03616 - - 0.0000000000000000000000000000000000000000000000000000005467 200.0
PJD3_k127_3633198_7 Phospholipase/Carboxylesterase K06999 GO:0003674,GO:0003824,GO:0016787,GO:0016788,GO:0052689 - 0.00000000000000000000000518 111.0
PJD3_k127_3669377_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 1.113e-203 642.0
PJD3_k127_3669377_1 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000183 265.0
PJD3_k127_3711848_0 Domain of unknown function (DUF3482) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003106 447.0
PJD3_k127_3711848_1 demethylmenaquinone methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 379.0
PJD3_k127_3711848_2 Protein of unknown function (DUF3014) - - - 0.00000000000000000000000000000000000000000000000000178 193.0
PJD3_k127_3711848_3 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000000000001035 184.0
PJD3_k127_3711848_4 DsrE/DsrF-like family K09004 - - 0.0000000000000000000000000000000000000000001753 164.0
PJD3_k127_3711848_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000005877 155.0
PJD3_k127_3711848_6 Sigma-70, region 4 K03088 - - 0.00000000000000000000000000000000000000003198 160.0
PJD3_k127_3711848_7 AntiSigma factor - - - 0.0000000000000005548 90.0
PJD3_k127_3726277_0 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 1.25e-278 894.0
PJD3_k127_3726277_1 signal peptide peptidase K04773 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 372.0
PJD3_k127_3726277_2 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006158 339.0
PJD3_k127_3726277_3 PFAM Uroporphyrin-III C tetrapyrrole (Corrin Porphyrin) methyltransferase K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000003121 255.0
PJD3_k127_3726277_4 Haloacid dehalogenase-like hydrolase K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000593 239.0
PJD3_k127_3726277_5 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000001479 200.0
PJD3_k127_3726277_6 rieske 2fe-2s - - - 0.000000000000000000000000000000004507 134.0
PJD3_k127_3748927_0 ABC transporter transmembrane region K18889 - - 1.967e-245 769.0
PJD3_k127_3748927_1 ABC transporter transmembrane region K18890 - - 5.998e-233 734.0
PJD3_k127_3750978_0 response regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003356 280.0
PJD3_k127_3750978_1 histidine kinase, dimerisation and phosphoacceptor region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004508 262.0
PJD3_k127_3750978_2 Diguanylate cyclase K13590 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000002469 218.0
PJD3_k127_3782071_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 4.99e-247 771.0
PJD3_k127_3782071_1 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 591.0
PJD3_k127_3782071_10 Fe-S assembly protein IscX - - - 0.000000000000000000000000002702 112.0
PJD3_k127_3782071_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 554.0
PJD3_k127_3782071_3 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005981 503.0
PJD3_k127_3782071_4 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006749 487.0
PJD3_k127_3782071_5 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003647 338.0
PJD3_k127_3782071_6 PFAM major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002637 257.0
PJD3_k127_3782071_7 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000003966 168.0
PJD3_k127_3782071_8 Cupin 2, conserved barrel domain protein - - - 0.0000000000000000000000000000000008923 147.0
PJD3_k127_3782071_9 Planctomycete cytochrome C - - - 0.00000000000000000000000000000002948 131.0
PJD3_k127_3782398_0 Aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002184 587.0
PJD3_k127_3782398_1 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 494.0
PJD3_k127_3782398_2 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 338.0
PJD3_k127_3782398_3 HAD-superfamily hydrolase, subfamily IB, PSPase-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000001643 239.0
PJD3_k127_3782518_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 2.954e-203 643.0
PJD3_k127_3782518_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003292 622.0
PJD3_k127_3782518_2 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005642 527.0
PJD3_k127_3782518_3 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006302 516.0
PJD3_k127_3782518_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 467.0
PJD3_k127_3782518_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 457.0
PJD3_k127_3782518_6 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 444.0
PJD3_k127_3782518_7 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003998 405.0
PJD3_k127_3784530_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 1.141e-206 651.0
PJD3_k127_3784530_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 372.0
PJD3_k127_3784530_2 WYL domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 356.0
PJD3_k127_3784530_3 Squalene epoxidase K03184,K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 343.0
PJD3_k127_3784530_4 PFAM MltA domain protein K08304 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 304.0
PJD3_k127_3784530_5 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000005889 240.0
PJD3_k127_3784530_6 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000004412 222.0
PJD3_k127_3784530_7 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.000000000000000000000000000000000000000000000000000004366 197.0
PJD3_k127_3784530_8 PFAM ApaG domain protein K06195 - - 0.000000000000000000000000000000000000000000000000001694 185.0
PJD3_k127_3784530_9 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000002438 66.0
PJD3_k127_3789596_0 Periplasmic binding protein domain K11959 - - 3.603e-221 691.0
PJD3_k127_3789596_1 ATP synthase alpha/beta chain, C terminal domain K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 593.0
PJD3_k127_3789596_2 Branched-chain amino acid transport system / permease component K11961 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005894 527.0
PJD3_k127_3789596_3 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006053 527.0
PJD3_k127_3789596_4 TIGRFAM alternate F1F0 ATPase, F1 subunit gamma K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001192 255.0
PJD3_k127_3789596_5 Urea ABC transporter ATP-binding protein urtd K11962 - - 0.0000000000000000000000000000000000000000000000000000000000000002151 234.0
PJD3_k127_3789596_6 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000003112 91.0
PJD3_k127_3811580_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005031 458.0
PJD3_k127_3811580_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 335.0
PJD3_k127_3811580_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009526 294.0
PJD3_k127_3811580_3 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000142 249.0
PJD3_k127_3814422_0 Belongs to the peptidase S1C family K04691,K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004875 460.0
PJD3_k127_3814422_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 335.0
PJD3_k127_3814422_2 NIF3 (NGG1p interacting factor 3) - - - 0.0000000000000000000000000000000662 134.0
PJD3_k127_3814422_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000001273 114.0
PJD3_k127_3829389_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009476 519.0
PJD3_k127_3829389_1 TIGRFAM chorismate mutase domain of proteobacterial P-protein, clade 2 K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002672 466.0
PJD3_k127_3829389_2 Auxin Efflux Carrier K07088 - - 0.000000000000000000000000000000000000000000008814 170.0
PJD3_k127_3829389_3 prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000001888 79.0
PJD3_k127_3841864_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1305.0
PJD3_k127_3841864_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002347 261.0
PJD3_k127_3841864_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003377 238.0
PJD3_k127_3841864_3 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000001835 55.0
PJD3_k127_3884920_0 - K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001876 422.0
PJD3_k127_3884920_1 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 379.0
PJD3_k127_3884920_2 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002133 342.0
PJD3_k127_3884920_3 GDSL-like Lipase/Acylhydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000005047 241.0
PJD3_k127_3884920_4 MazG-like family K16904 - 3.6.1.12 0.000000000000000000000005153 104.0
PJD3_k127_3884920_5 Type II secretion system protein B K02451 - - 0.0000000000000001297 81.0
PJD3_k127_3886164_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007108 489.0
PJD3_k127_3886164_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 335.0
PJD3_k127_3919582_0 Lytic transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003724 269.0
PJD3_k127_3919582_1 UDP binding domain K02474 - - 0.00000000000000000000000000000000001328 140.0
PJD3_k127_3919582_2 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000001098 73.0
PJD3_k127_3944928_0 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009275 572.0
PJD3_k127_3944928_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 544.0
PJD3_k127_3944928_10 Type IV pilus biogenesis K02656 - - 0.00000000000000000000000000000000000000000000000000000000000000008474 245.0
PJD3_k127_3944928_11 CBS domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000002029 215.0
PJD3_k127_3944928_12 COG0739 Membrane proteins related to metalloendopeptidases K06194 - - 0.000000000000000000000000000000000000000000001211 178.0
PJD3_k127_3944928_13 Domain of unknown function (DUF4115) K15539 - - 0.000000000000000001177 100.0
PJD3_k127_3944928_2 response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 445.0
PJD3_k127_3944928_3 3'-5' exonuclease K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 386.0
PJD3_k127_3944928_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004219 338.0
PJD3_k127_3944928_5 Belongs to the BI1 family K19416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 335.0
PJD3_k127_3944928_6 chemotaxis, protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000127 291.0
PJD3_k127_3944928_7 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001651 274.0
PJD3_k127_3944928_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000004402 245.0
PJD3_k127_3944928_9 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000001136 240.0
PJD3_k127_3950030_0 Aminotransferase K14261 - - 5.252e-218 682.0
PJD3_k127_3950030_1 homoserine dehydrogenase K00003 - 1.1.1.3 8.18e-208 656.0
PJD3_k127_3950030_10 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000000000001977 108.0
PJD3_k127_3950030_2 Threonine synthase K01733 - 4.2.3.1 3.489e-202 638.0
PJD3_k127_3950030_3 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003786 559.0
PJD3_k127_3950030_4 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.0000000000000000000000000000000000000000000000000000000000000000006159 231.0
PJD3_k127_3950030_5 Molybdopterin converting factor, large subunit K03635 - 2.8.1.12 0.000000000000000000000000000000000000000000000000000000000000002077 225.0
PJD3_k127_3950030_6 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000495 193.0
PJD3_k127_3950030_7 Protein of unknown function (DUF498/DUF598) - - - 0.00000000000000000000000000000000000000003909 155.0
PJD3_k127_3950030_8 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000001309 154.0
PJD3_k127_3950030_9 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.00000000000000000000000000000000004955 140.0
PJD3_k127_3951654_0 PrkA AAA domain K07180 - - 0.0 1127.0
PJD3_k127_3951654_1 abc transporter K06020 - 3.6.3.25 1.23e-301 931.0
PJD3_k127_3951654_2 SpoVR family K06415 - - 2.796e-214 697.0
PJD3_k127_3951654_3 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 6.852e-203 658.0
PJD3_k127_3951654_4 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 535.0
PJD3_k127_3951654_5 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 429.0
PJD3_k127_3951654_6 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 421.0
PJD3_k127_3951654_7 Aldo keto reductase - GO:0003674,GO:0003824,GO:0006081,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016491,GO:0042180,GO:0042182,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046185,GO:0051596,GO:0055114,GO:0071704,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 345.0
PJD3_k127_3951654_8 [2Fe-2S] binding domain K18029 - 1.17.2.1 0.000000000000000000000000000000000000000000000000000002908 196.0
PJD3_k127_3951654_9 Protein of unknown function (DUF454) K09790 - - 0.00000000000000000001768 93.0
PJD3_k127_3957070_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1079.0
PJD3_k127_3957070_1 PFAM aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000001849 244.0
PJD3_k127_3957070_2 Low molecular weight phosphotyrosine protein phosphatase K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.0000000000000000000000000000000000000000000000000000000000000000001148 239.0
PJD3_k127_3957070_3 belongs to the aldehyde dehydrogenase family K00128,K00154 - 1.2.1.3,1.2.1.68 0.00000000000000000000000000000000000000000138 158.0
PJD3_k127_3970578_0 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 526.0
PJD3_k127_3970578_1 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007983 509.0
PJD3_k127_3970578_2 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 467.0
PJD3_k127_3970578_3 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001288 271.0
PJD3_k127_3970578_4 PFAM cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000000001607 242.0
PJD3_k127_3970578_5 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000005509 192.0
PJD3_k127_3970578_6 Belongs to the frataxin family K06202 - - 0.00003955 51.0
PJD3_k127_3975758_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 1.254e-272 858.0
PJD3_k127_3975758_1 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 603.0
PJD3_k127_3975758_10 PFAM Heavy metal transport detoxification protein - - - 0.00000000000003709 79.0
PJD3_k127_3975758_11 SOS response associated peptidase (SRAP) - - - 0.000000000379 63.0
PJD3_k127_3975758_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822,K00833 - 2.6.1.18,2.6.1.62 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009316 602.0
PJD3_k127_3975758_3 Major Facilitator K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 586.0
PJD3_k127_3975758_4 TIGRFAM 3-oxoacid CoA-transferase, B subunit K01032 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 471.0
PJD3_k127_3975758_5 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000618 386.0
PJD3_k127_3975758_6 Peptidase M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 301.0
PJD3_k127_3975758_7 NADH dehydrogenase NAD(P)H nitroreductase K09019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009796 264.0
PJD3_k127_3975758_8 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000002627 226.0
PJD3_k127_3975758_9 Hsp20/alpha crystallin family K13993 - - 0.00000000000000000000000000000000000003217 147.0
PJD3_k127_3976264_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 2.568e-258 807.0
PJD3_k127_3976264_1 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 576.0
PJD3_k127_3976264_2 peptidase dimerisation domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 542.0
PJD3_k127_3976264_3 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 511.0
PJD3_k127_3976264_4 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002842 485.0
PJD3_k127_3976264_5 Cys/Met metabolism PLP-dependent enzyme K01739,K01758,K01760,K01761 - 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007905 473.0
PJD3_k127_3976264_6 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 427.0
PJD3_k127_3976264_7 zinc protease protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 377.0
PJD3_k127_3976264_8 ATPases associated with a variety of cellular activities K02032 - - 0.000000000000000000000000000000000000000000000000000003766 210.0
PJD3_k127_3981761_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 347.0
PJD3_k127_3981761_1 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000005948 153.0
PJD3_k127_3987803_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 5.433e-213 675.0
PJD3_k127_3987803_1 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 569.0
PJD3_k127_3987803_10 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07497 - - 0.000000000000000000000000000000006079 130.0
PJD3_k127_3987803_11 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000006268 132.0
PJD3_k127_3987803_13 - - - - 0.0000000000000359 81.0
PJD3_k127_3987803_14 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 0.0000000001744 63.0
PJD3_k127_3987803_2 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 524.0
PJD3_k127_3987803_3 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 460.0
PJD3_k127_3987803_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 370.0
PJD3_k127_3987803_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000003484 234.0
PJD3_k127_3987803_6 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000000000000000000000000000001131 220.0
PJD3_k127_3987803_7 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.00000000000000000000000000000000000000000000000000000000108 206.0
PJD3_k127_3987803_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000000000000000000000001641 159.0
PJD3_k127_3998186_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1483.0
PJD3_k127_3998186_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family - - - 1.33e-322 1007.0
PJD3_k127_3998186_10 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003169 301.0
PJD3_k127_3998186_11 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000002866 242.0
PJD3_k127_3998186_12 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000008953 211.0
PJD3_k127_3998186_13 pyridine nucleotide-disulfide oxidoreductase family protein K17218 - 1.8.5.4 0.00000000000000000000000000000000000000000000001749 184.0
PJD3_k127_3998186_14 Protein of unknown function (DUF3617) - - - 0.00000000000000000000000000000000000000000000002493 193.0
PJD3_k127_3998186_15 Succinate dehydrogenase, cytochrome b556 subunit K00241 - - 0.0000000000000000000000000000000000000000000424 165.0
PJD3_k127_3998186_16 Succinate dehydrogenase hydrophobic membrane anchor protein K00242 - - 0.0000000000000000000000000000000000001257 145.0
PJD3_k127_3998186_17 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000009536 136.0
PJD3_k127_3998186_18 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000006247 122.0
PJD3_k127_3998186_19 Signal peptide protein - - - 0.00000000000005698 82.0
PJD3_k127_3998186_2 2-methylcitrate dehydratase K01720 - 4.2.1.79 2.693e-283 873.0
PJD3_k127_3998186_3 domain protein K03320 - - 4.305e-236 752.0
PJD3_k127_3998186_4 Belongs to the citrate synthase family K01659 - 2.3.3.5 1.356e-208 653.0
PJD3_k127_3998186_5 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 546.0
PJD3_k127_3998186_6 Phosphoenolpyruvate phosphomutase K01841 - 5.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 475.0
PJD3_k127_3998186_7 Protein of unknown function (DUF3641) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 446.0
PJD3_k127_3998186_8 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 391.0
PJD3_k127_3998186_9 GntR family K03710 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006793 346.0
PJD3_k127_4017978_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 2.247e-248 771.0
PJD3_k127_4017978_1 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 295.0
PJD3_k127_4017978_2 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000002018 265.0
PJD3_k127_4017978_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000003184 215.0
PJD3_k127_4017978_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000448 196.0
PJD3_k127_4017978_5 mRNA catabolic process - - - 0.0000000000000000000000000000000000000000006461 168.0
PJD3_k127_4017978_6 Thioredoxin-like - - - 0.0000000000000000000000000000000000000003956 155.0
PJD3_k127_4017978_7 Protein of unknown function (DUF3426) - - - 0.00000000000000000005992 98.0
PJD3_k127_4042439_0 Cysteine-rich domain - - - 9.79e-202 639.0
PJD3_k127_4042439_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 596.0
PJD3_k127_4042439_10 GCN5-related N-acetyl-transferase K06975 - - 0.0000000000000000003491 99.0
PJD3_k127_4042439_2 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 445.0
PJD3_k127_4042439_3 response regulator K02483,K07659 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000622 363.0
PJD3_k127_4042439_4 histidine kinase HAMP region domain protein K07638 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 369.0
PJD3_k127_4042439_5 Protein of unknown function (DUF3501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001513 256.0
PJD3_k127_4042439_6 TIGRFAM phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000006606 255.0
PJD3_k127_4042439_7 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001399 236.0
PJD3_k127_4042439_8 Acetyltransferase K03789,K14742 - 2.3.1.128 0.00000000000000000000000000000000000000004582 162.0
PJD3_k127_4042439_9 Peptidase M22 glycoprotease K14742 - - 0.000000000000000000000000001096 128.0
PJD3_k127_4058539_0 Cobalamin synthesis protein cobW C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 503.0
PJD3_k127_4058539_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005364 387.0
PJD3_k127_4058539_2 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 304.0
PJD3_k127_4058539_3 lipid A biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 307.0
PJD3_k127_4058539_4 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000000000000000000000000000000001791 268.0
PJD3_k127_4058539_5 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000001043 225.0
PJD3_k127_4058539_6 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000000008043 218.0
PJD3_k127_4058539_7 response to antibiotic - - - 0.000000000000000000000000000000000000002909 161.0
PJD3_k127_4058539_8 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.000000000000000000000002993 104.0
PJD3_k127_4075671_0 Pfam:DUF1446 - - - 3.701e-247 773.0
PJD3_k127_4075671_1 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000006475 63.0
PJD3_k127_408318_0 Circularly permuted ATP-grasp type 2 - - - 7.289e-278 887.0
PJD3_k127_408318_1 Putative amidoligase enzyme (DUF2126) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 506.0
PJD3_k127_4086856_0 Hydantoinase/oxoprolinase N-terminal region K01473 - 3.5.2.14 0.0 1057.0
PJD3_k127_4086856_1 Thiolase, C-terminal domain - - - 2.141e-194 613.0
PJD3_k127_4086856_2 AMP-binding enzyme C-terminal domain K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 469.0
PJD3_k127_4086856_3 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 404.0
PJD3_k127_4086856_4 FCD - - - 0.00000000000000000000000000000000000000000000000007409 194.0
PJD3_k127_4086856_5 PFAM Class I peptide chain release factor K15034 - - 0.000000000000000000000000000000000000000000000009436 178.0
PJD3_k127_4086856_6 Protein of unknown function (DUF2505) - - - 0.00000000000000000000000000000000000000001468 160.0
PJD3_k127_4086856_7 - - - - 0.000000000000000006621 89.0
PJD3_k127_4086856_8 Zinc-binding dehydrogenase - - - 0.00000000000004331 72.0
PJD3_k127_4088606_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006501 521.0
PJD3_k127_4088606_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 361.0
PJD3_k127_4088606_2 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 310.0
PJD3_k127_4088606_3 CHASE2 K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001101 244.0
PJD3_k127_4088606_4 protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000003009 169.0
PJD3_k127_4088606_5 (FHA) domain - - - 0.0000000000000000000000000000000000001076 149.0
PJD3_k127_4094902_0 Cytochrome C and Quinol oxidase polypeptide I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 513.0
PJD3_k127_4094902_1 protein involved in response to NO K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 343.0
PJD3_k127_4094902_2 - - - - 0.00000000000000000000000000000000000000008106 159.0
PJD3_k127_4094902_3 MarR family - - - 0.000000000000000000000000000000000001041 146.0
PJD3_k127_4094902_4 COG2010 Cytochrome c, mono- and diheme variants - - - 0.000000000000000000000000000000000003587 156.0
PJD3_k127_4094902_5 Permeases of the major facilitator superfamily - - - 0.00000000000000000000004514 99.0
PJD3_k127_4094902_6 Cytochrome oxidase assembly protein K02259 - - 0.0000004388 63.0
PJD3_k127_4101378_0 2 iron, 2 sulfur cluster binding K00207,K00219,K00317,K00528,K02293,K02823,K05368,K10797 - 1.16.1.3,1.18.1.2,1.19.1.1,1.3.1.2,1.3.1.31,1.3.1.34,1.3.5.5,1.5.1.41,1.5.8.1,1.5.8.2 9.436e-279 876.0
PJD3_k127_4101378_1 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 501.0
PJD3_k127_4101378_2 COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001892 258.0
PJD3_k127_4101378_3 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000001963 189.0
PJD3_k127_4101431_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 579.0
PJD3_k127_4101431_1 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 519.0
PJD3_k127_4101431_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 367.0
PJD3_k127_4101431_3 glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 358.0
PJD3_k127_4101431_4 ABC transporter substrate binding protein K01989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001363 256.0
PJD3_k127_4101431_5 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000002248 191.0
PJD3_k127_4101431_6 Acyltransferase family - - - 0.00000000000000001647 94.0
PJD3_k127_4101431_7 Histidine kinase - - - 0.000000000000008489 83.0
PJD3_k127_4106255_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 572.0
PJD3_k127_4106255_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000003096 246.0
PJD3_k127_4106255_2 Entericidin EcnA/B family - - - 0.000004927 49.0
PJD3_k127_4115370_0 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 594.0
PJD3_k127_4115370_1 Lipocalin-like domain - - - 0.00000000000000000000000000000033 143.0
PJD3_k127_4123125_0 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 360.0
PJD3_k127_4123125_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000864 347.0
PJD3_k127_4123125_2 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004508 266.0
PJD3_k127_4123125_3 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000003079 175.0
PJD3_k127_4133389_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K12276 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002915 601.0
PJD3_k127_4133389_1 Type II secretion system (T2SS), protein F K02455,K12278 - - 0.00000000000000000000000000000000000000000000000000456 190.0
PJD3_k127_4133389_2 type IV pilus modification protein PilV K10927 - - 0.000000000000000000000001426 117.0
PJD3_k127_4133389_3 Tfp pilus assembly protein FimT K10926 - - 0.00000000002393 72.0
PJD3_k127_4145686_0 Cytochrome b(N-terminal)/b6/petB - - - 1.592e-219 696.0
PJD3_k127_4145686_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001414 271.0
PJD3_k127_4145686_2 Rubrerythrin - - - 0.00000000000000000000000000000004898 138.0
PJD3_k127_4157912_0 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 348.0
PJD3_k127_4157912_1 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008747 322.0
PJD3_k127_4157912_2 E1-E2 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000175 210.0
PJD3_k127_4157912_3 Protein of unknown function (DUF2933) - - - 0.000000000000000000000004638 107.0
PJD3_k127_4157912_4 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.00000008204 61.0
PJD3_k127_4159319_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 501.0
PJD3_k127_4159319_1 Fungal trichothecene efflux pump (TRI12) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002133 281.0
PJD3_k127_4206594_0 Sigma-54 interaction domain K10943 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 425.0
PJD3_k127_4206594_1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005433 282.0
PJD3_k127_4246897_0 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 598.0
PJD3_k127_4246897_1 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 433.0
PJD3_k127_4246897_2 3-carboxy-cis,cis-muconate cycloisomerase K01857 - 5.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 401.0
PJD3_k127_4246897_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000004776 73.0
PJD3_k127_4282942_0 Protein of unknown function (DUF4080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 594.0
PJD3_k127_4282942_1 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 451.0
PJD3_k127_4282942_10 FAD dependent oxidoreductase K00303 - 1.5.3.1 0.000000000000000000000000001961 116.0
PJD3_k127_4282942_11 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000001138 93.0
PJD3_k127_4282942_12 - - - - 0.0000000592 63.0
PJD3_k127_4282942_2 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006761 389.0
PJD3_k127_4282942_3 Nitrile hydratase K01721 - 4.2.1.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004457 329.0
PJD3_k127_4282942_4 NHase catalyzes the hydration of various nitrile compounds to the corresponding amides K20807 - 4.2.1.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001357 306.0
PJD3_k127_4282942_5 PFAM Ornithine cyclodeaminase mu-crystallin K01750 - 4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000002391 269.0
PJD3_k127_4282942_6 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000008315 264.0
PJD3_k127_4282942_7 Nudix hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001488 257.0
PJD3_k127_4282942_8 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000000000000000000000003912 158.0
PJD3_k127_4282942_9 Nitrile hydratase beta subunit - - - 0.000000000000000000000000000000000006379 150.0
PJD3_k127_4319446_0 Receptor family ligand binding region - - - 5.117e-205 661.0
PJD3_k127_4319446_1 ATPases associated with a variety of cellular activities K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 338.0
PJD3_k127_4319446_2 GMC oxidoreductase K00108 - 1.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 328.0
PJD3_k127_4329704_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 441.0
PJD3_k127_4329704_1 Protein of unknown function (DUF2892) - - - 0.00000000000000000000002263 103.0
PJD3_k127_4344392_0 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004108 313.0
PJD3_k127_4344392_1 Peptidase U32 K08303 - - 0.000000000000000000000000000000000000000003549 161.0
PJD3_k127_4378207_0 argininosuccinate lyase K01755 - 4.3.2.1 1.084e-225 711.0
PJD3_k127_4378207_1 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003953 332.0
PJD3_k127_4378207_2 Histidine kinase K08082 - 2.7.13.3 0.000000000000000000000001953 111.0
PJD3_k127_4384377_0 Belongs to the thiolase family K00626 - 2.3.1.9 3.135e-196 617.0
PJD3_k127_4384377_1 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006394 524.0
PJD3_k127_4384377_10 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) - - - 0.000000000000000001812 89.0
PJD3_k127_4384377_11 LUD domain K00782 - - 0.000000000000001798 76.0
PJD3_k127_4384377_12 homoserine dehydrogenase - - - 0.0000000000008017 68.0
PJD3_k127_4384377_2 Protein of unknown function (DUF1298) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 472.0
PJD3_k127_4384377_3 D-isomer specific 2-hydroxyacid dehydrogenase K00015,K00090 - 1.1.1.215,1.1.1.26,1.1.1.79,1.1.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 360.0
PJD3_k127_4384377_4 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004519,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008854,GO:0009314,GO:0009338,GO:0009628,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044355,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0099046,GO:0140097,GO:1901360,GO:1902494 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008769 344.0
PJD3_k127_4384377_5 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000002668 282.0
PJD3_k127_4384377_6 Bacterial protein of unknown function (DUF924) - - - 0.0000000000000000000000000000000000000000000000000000000000009128 232.0
PJD3_k127_4384377_7 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000217 153.0
PJD3_k127_4384377_8 PFAM acyl-coA-binding protein, ACBP - - - 0.0000000000000000000000000000000000008742 142.0
PJD3_k127_4384377_9 Copper resistance protein D - - - 0.00000000000000000000000000000001854 133.0
PJD3_k127_4413538_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 2.625e-279 875.0
PJD3_k127_4413538_1 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 569.0
PJD3_k127_4413538_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003626 507.0
PJD3_k127_4413538_3 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 314.0
PJD3_k127_4413538_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000289 263.0
PJD3_k127_4413538_5 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000004403 118.0
PJD3_k127_4418244_0 COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family K09461 - 1.14.13.40 0.0 1202.0
PJD3_k127_4418244_1 Thymidine phosphorylase K00758 - 2.4.2.4 9.952e-230 722.0
PJD3_k127_4418244_10 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07644,K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000006597 244.0
PJD3_k127_4418244_11 metal-binding protein - - - 0.000000000000000000000000000000000000000000000000000000001509 205.0
PJD3_k127_4418244_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000005159 169.0
PJD3_k127_4418244_13 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000003159 164.0
PJD3_k127_4418244_14 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000000000000000000000000000000000004122 164.0
PJD3_k127_4418244_15 Domain of unknown function DUF108 K06989 - 1.4.1.21 0.000000000000000000000000000000037 139.0
PJD3_k127_4418244_16 Copper binding periplasmic protein CusF - - - 0.0000000000000000000001131 109.0
PJD3_k127_4418244_17 Short C-terminal domain K08982 - - 0.0000000000006031 71.0
PJD3_k127_4418244_18 DNA polymerase III, epsilon subunit - - - 0.000000000003755 75.0
PJD3_k127_4418244_2 multicopper oxidase type 3 K22348 - 1.16.3.3 1.429e-225 709.0
PJD3_k127_4418244_3 Peptidase family M20/M25/M40 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 507.0
PJD3_k127_4418244_4 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 381.0
PJD3_k127_4418244_5 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000485 355.0
PJD3_k127_4418244_6 Belongs to the ribose-phosphate pyrophosphokinase family K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008892 325.0
PJD3_k127_4418244_7 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 308.0
PJD3_k127_4418244_8 Peptidase M50 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 295.0
PJD3_k127_4418244_9 CreA protein K05805 - - 0.000000000000000000000000000000000000000000000000000000000000000002078 230.0
PJD3_k127_4419392_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 531.0
PJD3_k127_4419392_1 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000633 516.0
PJD3_k127_4419392_2 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 344.0
PJD3_k127_4419392_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 316.0
PJD3_k127_4419392_4 Penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000000000008523 197.0
PJD3_k127_4419392_5 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000003453 155.0
PJD3_k127_4435375_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003248 267.0
PJD3_k127_4435375_1 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000185 248.0
PJD3_k127_4435375_2 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000002872 246.0
PJD3_k127_4435375_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000005437 141.0
PJD3_k127_4435507_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0 1014.0
PJD3_k127_4435507_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 9.5e-290 895.0
PJD3_k127_4435507_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000000000000000000006947 210.0
PJD3_k127_4435507_3 Domain of unknown function (DUF4212) - - - 0.000000000000000000000000000000000000008487 146.0
PJD3_k127_4474077_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 318.0
PJD3_k127_4474077_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 299.0
PJD3_k127_4474077_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000007471 266.0
PJD3_k127_4474077_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000003384 194.0
PJD3_k127_4474077_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000006108 164.0
PJD3_k127_4474077_5 PFAM Preprotein translocase SecG subunit K03075 - - 0.00000000000000000000000001446 113.0
PJD3_k127_4474077_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000007478 58.0
PJD3_k127_4507302_0 FAD linked oxidase domain protein - - - 9.145e-274 854.0
PJD3_k127_4507302_1 C-terminal regulatory domain of Threonine dehydratase K01754 - 4.3.1.19 9.585e-250 782.0
PJD3_k127_4507302_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003604 530.0
PJD3_k127_4507302_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007991 416.0
PJD3_k127_4507302_4 cytochrome P-450 K00493 - 1.14.14.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 299.0
PJD3_k127_4507302_5 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000003318 215.0
PJD3_k127_4538857_0 His Kinase A (phospho-acceptor) domain - - - 3.016e-273 853.0
PJD3_k127_4538857_1 Putative nucleotidyltransferase substrate binding domain K07182 - - 2.045e-194 618.0
PJD3_k127_4596438_0 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003884 298.0
PJD3_k127_4596438_1 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000009486 216.0
PJD3_k127_4596438_2 Protein of unknown function (DUF3833) - - - 0.00000000000000000000000000000000000000000000000000005212 198.0
PJD3_k127_4596438_3 SnoaL-like domain K01822 - 5.3.3.1 0.000000000000000000000000000000000000000000006197 178.0
PJD3_k127_4596438_4 Universal stress protein family - - - 0.000000000000006788 81.0
PJD3_k127_4603477_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1437.0
PJD3_k127_4603477_1 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 6.867e-276 852.0
PJD3_k127_4603477_10 MaoC like domain - - - 0.00000000000000000000000000000000000000000000000000009907 190.0
PJD3_k127_4603477_11 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000001269 184.0
PJD3_k127_4603477_12 PFAM RNA-binding S4 domain protein K04762 - - 0.0000000000000000000000000000000000003113 146.0
PJD3_k127_4603477_13 FixH family K09926 - - 0.00000000000000000000000000000004087 131.0
PJD3_k127_4603477_14 Cytochrome oxidase maturation protein cbb3-type - - - 0.000000000001703 69.0
PJD3_k127_4603477_15 Cbb3-type cytochrome oxidase K00407 - - 0.000000000001865 70.0
PJD3_k127_4603477_16 - - - - 0.000000000001884 72.0
PJD3_k127_4603477_17 Glutathione S-transferase, C-terminal domain - - - 0.000000005044 58.0
PJD3_k127_4603477_2 Putative metal-binding domain of cation transport ATPase K01533 - 3.6.3.4 8.781e-213 691.0
PJD3_k127_4603477_3 cytochrome C oxidase - - - 5.773e-198 637.0
PJD3_k127_4603477_4 Cytochrome c oxidase, subunit K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 391.0
PJD3_k127_4603477_5 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006323 368.0
PJD3_k127_4603477_6 cytochrome C oxidase K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006243 331.0
PJD3_k127_4603477_7 dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 331.0
PJD3_k127_4603477_8 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003252 275.0
PJD3_k127_4603477_9 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000008667 216.0
PJD3_k127_4606289_0 Catalyzes the dehydration of galactarate to form 5- dehydro-4-deoxy-D-glucarate K01685 - 4.2.1.7 1.768e-238 746.0
PJD3_k127_4606289_1 Domain of Unknown Function (DUF349) - - - 0.00000000000000000000000000000000000000000007646 176.0
PJD3_k127_4606289_2 PFAM aminotransferase class V - - - 0.000000000000000004263 84.0
PJD3_k127_4608823_0 Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 7.935e-204 655.0
PJD3_k127_4608823_1 PFAM peptidase S58 DmpA K01266 - 3.4.11.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005125 381.0
PJD3_k127_4608823_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003429 361.0
PJD3_k127_4608823_3 Peptidase family M20/M25/M40 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 300.0
PJD3_k127_4608823_4 PFAM Carboxymuconolactone decarboxylase K01607 - 4.1.1.44 0.00000000000000000000000000000000000000000000001727 175.0
PJD3_k127_4608823_5 Sodium Bile acid symporter family - - - 0.00000000000000000000000000000000000000112 159.0
PJD3_k127_4614988_0 Cytochrome D1 heme domain K15864 - 1.7.2.1,1.7.99.1 7.879e-307 954.0
PJD3_k127_4614988_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000793 466.0
PJD3_k127_4614988_10 cytochrome - - - 0.000000000716 71.0
PJD3_k127_4614988_2 Cyclic nucleotide-monophosphate binding domain K21563 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006401 261.0
PJD3_k127_4614988_3 Transcriptional regulator, Crp Fnr family K21563 - - 0.000000000000000000000000000000000000000000000000000000000000000000009626 242.0
PJD3_k127_4614988_4 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000001536 216.0
PJD3_k127_4614988_5 Hydrolase, P-loop family K06925 - - 0.0000000000000000000000000000000000001949 147.0
PJD3_k127_4614988_6 Cytochrome c K08738 - - 0.00000000000000000000000000001643 120.0
PJD3_k127_4614988_7 TonB dependent receptor K02014 - - 0.000000000000000000000001252 110.0
PJD3_k127_4614988_8 Invasion gene expression up-regulator SirB - - - 0.000000000000000000000008344 106.0
PJD3_k127_4614988_9 Uncharacterized conserved protein (DUF2249) - - - 0.0000000000001837 73.0
PJD3_k127_4631571_0 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 540.0
PJD3_k127_4631571_1 Soluble lytic murein K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004927 502.0
PJD3_k127_4631571_10 Protein of unknown function (DUF2905) - - - 0.0000000000000000001534 94.0
PJD3_k127_4631571_2 Domain of unknown function (DUF3391) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 422.0
PJD3_k127_4631571_3 Domain of unknown function (DUF3391) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004152 364.0
PJD3_k127_4631571_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 351.0
PJD3_k127_4631571_5 GGDEF domain containing protein K13243 - 3.1.4.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 309.0
PJD3_k127_4631571_6 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008158 273.0
PJD3_k127_4631571_7 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000004474 219.0
PJD3_k127_4631571_8 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000004266 207.0
PJD3_k127_4631571_9 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family - - - 0.0000000000000000000000000000000006868 142.0
PJD3_k127_4634099_0 iron ion homeostasis - - - 2.21e-250 783.0
PJD3_k127_4634099_1 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004354 490.0
PJD3_k127_4634099_2 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007661 430.0
PJD3_k127_4634099_3 cell septum assembly - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003253 278.0
PJD3_k127_4634099_4 Beta/Gamma crystallin - - - 0.0000000000000000000000000000000000000001975 152.0
PJD3_k127_4634099_5 - - - - 0.0000000000000000000000000006919 118.0
PJD3_k127_4642409_0 Catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006399 512.0
PJD3_k127_4642409_1 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 296.0
PJD3_k127_4659809_0 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 357.0
PJD3_k127_4659809_1 metal-dependent enzyme of the double-stranded beta helix superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001768 266.0
PJD3_k127_4659809_2 Haem-degrading - - - 0.00000000000001747 74.0
PJD3_k127_4659809_3 Universal stress protein family - - - 0.000001354 59.0
PJD3_k127_4662641_0 Extracellular ligand-binding receptor K01999 - - 7.425e-196 619.0
PJD3_k127_4662641_1 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 421.0
PJD3_k127_4662641_2 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000001795 171.0
PJD3_k127_4681199_0 NMT1/THI5 like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 496.0
PJD3_k127_4681199_1 COG1116 ABC-type nitrate sulfonate bicarbonate transport system, ATPase component K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006527 359.0
PJD3_k127_4681199_2 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 294.0
PJD3_k127_4681199_3 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.000000000000000000000000000000418 123.0
PJD3_k127_4695280_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 8.848e-236 734.0
PJD3_k127_4695280_1 PFAM Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain K20035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007516 571.0
PJD3_k127_4695280_10 PFAM NUDIX hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000161 258.0
PJD3_k127_4695280_11 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000000000004458 239.0
PJD3_k127_4695280_12 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000000000003184 215.0
PJD3_k127_4695280_13 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000000000000001475 179.0
PJD3_k127_4695280_14 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000417 182.0
PJD3_k127_4695280_15 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000000000000002743 151.0
PJD3_k127_4695280_16 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000000000000006588 153.0
PJD3_k127_4695280_17 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000000000006961 127.0
PJD3_k127_4695280_18 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000000000008316 128.0
PJD3_k127_4695280_2 Peptidase M48 K06013 - 3.4.24.84 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 521.0
PJD3_k127_4695280_3 DNA polymerase III is a complex multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3 to 5 exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 525.0
PJD3_k127_4695280_4 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 422.0
PJD3_k127_4695280_5 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 420.0
PJD3_k127_4695280_6 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 334.0
PJD3_k127_4695280_7 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 305.0
PJD3_k127_4695280_8 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001668 281.0
PJD3_k127_4695280_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000001194 261.0
PJD3_k127_4700879_0 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003921 337.0
PJD3_k127_4700879_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000715 327.0
PJD3_k127_4700879_2 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000914 275.0
PJD3_k127_4700879_3 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000399 256.0
PJD3_k127_4700879_4 Phosphoglycolate phosphatase K22292 - 3.1.3.105 0.00000000000000000000000000000000000000000000000000000000000000000000005253 251.0
PJD3_k127_4705309_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 4.069e-212 674.0
PJD3_k127_4705309_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K01897 - 6.2.1.3 1.612e-205 651.0
PJD3_k127_4705309_2 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 308.0
PJD3_k127_4705309_3 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003521 247.0
PJD3_k127_4705309_4 metal-dependent membrane protease - - - 0.0000000000000000000000000000000000000000000002133 182.0
PJD3_k127_4705309_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.0000000000000000000000000001428 118.0
PJD3_k127_4705309_6 DNA polymerase III K02342 - 2.7.7.7 0.0000000000000000003356 87.0
PJD3_k127_4710362_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 9.836e-315 975.0
PJD3_k127_4710362_1 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 1.275e-241 755.0
PJD3_k127_4710362_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004559 590.0
PJD3_k127_4710362_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 301.0
PJD3_k127_4710362_4 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000002279 245.0
PJD3_k127_4710362_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000001392 213.0
PJD3_k127_4710362_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000000000000000004475 172.0
PJD3_k127_4710362_7 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.000000000000000000000000000000000000000001761 160.0
PJD3_k127_4719576_0 AMP-binding enzyme C-terminal domain K18661 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 567.0
PJD3_k127_4719576_1 Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 336.0
PJD3_k127_4728843_0 Conserved repeat domain K12287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001998 317.0
PJD3_k127_4728843_1 Prokaryotic N-terminal methylation motif K12285 - - 0.0000000000000000003047 92.0
PJD3_k127_4728843_2 Tetratricopeptide repeat K12284 - - 0.0000000000000001195 91.0
PJD3_k127_4728843_3 Pilus assembly protein PilX K12286 - - 0.00000000000002008 79.0
PJD3_k127_4734960_0 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 565.0
PJD3_k127_4734960_1 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 310.0
PJD3_k127_4742822_0 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001154 257.0
PJD3_k127_4742822_1 Bacterial regulatory proteins, luxR family K07684 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005788 244.0
PJD3_k127_4742822_2 Histidine kinase K07673 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000001835 214.0
PJD3_k127_4743251_0 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 520.0
PJD3_k127_4743251_1 Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 365.0
PJD3_k127_4743251_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.0000000000000000000000000008741 117.0
PJD3_k127_4779689_0 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006186 406.0
PJD3_k127_4779689_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000005712 86.0
PJD3_k127_4779689_2 KTSC domain - - - 0.0000000000003428 75.0
PJD3_k127_4790165_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 1.26e-206 650.0
PJD3_k127_4790165_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 604.0
PJD3_k127_4790165_2 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 486.0
PJD3_k127_4790165_3 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002568 352.0
PJD3_k127_4790165_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000001301 136.0
PJD3_k127_479891_0 COG0480 Translation elongation factors (GTPases) K02355 - - 8.767e-290 907.0
PJD3_k127_479891_1 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 398.0
PJD3_k127_479891_2 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 299.0
PJD3_k127_479891_3 Sensors of blue-light using FAD - - - 0.000000000000000000000000000000000000000000000000003836 184.0
PJD3_k127_479891_4 Glutaredoxin - - - 0.000000000000000000000000000000000000000000000000004935 183.0
PJD3_k127_4800771_0 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002339 355.0
PJD3_k127_4800771_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000005073 225.0
PJD3_k127_4812303_0 GTP-binding protein K06207 - - 7.071e-317 998.0
PJD3_k127_4812303_1 PFAM Benzoate membrane transport protein K05782 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007436 504.0
PJD3_k127_4812303_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009793 314.0
PJD3_k127_4812303_3 Aminotransferase K14287 - 2.6.1.88 0.0000000000000000000000000000000000000000000000000000000000003644 212.0
PJD3_k127_4812303_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000000001388 159.0
PJD3_k127_4812303_5 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000000002622 148.0
PJD3_k127_4812303_6 SMART Water Stress and Hypersensitive response - - - 0.00000000000646 75.0
PJD3_k127_4818873_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 404.0
PJD3_k127_4818873_1 impB/mucB/samB family K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 389.0
PJD3_k127_4818873_2 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002595 278.0
PJD3_k127_4818873_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K08319 - 1.1.1.31,1.1.1.411 0.00000000000000000000000000000000000000000000000000000000000000000000000189 258.0
PJD3_k127_4818873_4 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.000000000000000000000000000000000000000000000000000005755 202.0
PJD3_k127_4818873_5 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.00000000000000000000000000000003358 124.0
PJD3_k127_4818873_6 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000000005232 124.0
PJD3_k127_4818873_7 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.0000000000001665 77.0
PJD3_k127_4825481_0 Amidase, hydantoinase carbamoylase family K02083,K06016 - 3.5.1.6,3.5.1.87,3.5.3.9 5.631e-281 876.0
PJD3_k127_4825481_1 peptidase dimerisation domain protein - - - 1.187e-207 678.0
PJD3_k127_4825481_2 deacetylase K01452 - 3.5.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 542.0
PJD3_k127_4825481_3 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.00000000000000000000000000000000000000003507 154.0
PJD3_k127_4825481_4 FCD - - - 0.000000000000000000000000000000000006653 141.0
PJD3_k127_4828957_0 NMT1-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 503.0
PJD3_k127_4828957_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005706 499.0
PJD3_k127_4828957_2 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000002475 120.0
PJD3_k127_4829375_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K21307 - 1.8.5.6 0.0 1550.0
PJD3_k127_4829375_1 FAD binding domain K00394 - 1.8.99.2 0.0 1228.0
PJD3_k127_4829375_10 Putative zinc- or iron-chelating domain K06940 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007214 367.0
PJD3_k127_4829375_11 4Fe-4S dicluster domain K16887 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 349.0
PJD3_k127_4829375_12 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K00383 GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700 1.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 328.0
PJD3_k127_4829375_13 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 310.0
PJD3_k127_4829375_14 Adenosine-5'-phosphosulfate reductase beta subunit K00395 - 1.8.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 297.0
PJD3_k127_4829375_15 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003719 255.0
PJD3_k127_4829375_16 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000008831 248.0
PJD3_k127_4829375_17 DsrC like protein - - - 0.00000000000000000000000000000000000000003346 154.0
PJD3_k127_4829375_18 Peptidase S24-like - - - 0.000000000000000000000000000000002822 135.0
PJD3_k127_4829375_19 - - - - 0.0000000000000000000000000000004853 128.0
PJD3_k127_4829375_2 Methyl-viologen-reducing hydrogenase, delta subunit K16886 - - 0.0 1071.0
PJD3_k127_4829375_20 Belongs to the sulfur carrier protein TusA family K04085 - - 0.000000000000000000000000000005081 121.0
PJD3_k127_4829375_21 - - - - 0.00000000000000000000001414 112.0
PJD3_k127_4829375_22 - - - - 0.00000000000001863 74.0
PJD3_k127_4829375_23 - - - - 0.0000001111 55.0
PJD3_k127_4829375_3 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 4.47e-220 689.0
PJD3_k127_4829375_4 Glucose inhibited division protein A K03388,K16885 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.591e-202 638.0
PJD3_k127_4829375_5 2Fe-2S iron-sulfur cluster binding domain K00523 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004667 489.0
PJD3_k127_4829375_6 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003068 471.0
PJD3_k127_4829375_7 long-chain fatty acid transport protein K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 466.0
PJD3_k127_4829375_8 PFAM 4Fe-4S K00184,K21308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003643 452.0
PJD3_k127_4829375_9 DMSO reductase anchor subunit (DmsC) K21309 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 409.0
PJD3_k127_4849957_0 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000001578 203.0
PJD3_k127_4849957_1 OsmC-like protein - - - 0.00000000000000000000000000000000000002004 150.0
PJD3_k127_4849957_2 Adenylate cyclase - - - 0.00000000000000000006029 104.0
PJD3_k127_4852780_0 Amidohydrolase family - - - 4.008e-195 621.0
PJD3_k127_4852780_1 Bacterial extracellular solute-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005732 459.0
PJD3_k127_4852780_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004743 454.0
PJD3_k127_4852780_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000006282 254.0
PJD3_k127_4852780_4 Amino-transferase class IV - - - 0.00000000000000000000000000000000000000000000000000000000000000000007411 235.0
PJD3_k127_4852780_5 Protein of unknown function (DUF465) K09794 - - 0.000000000000000001188 88.0
PJD3_k127_4897394_0 xanthine dehydrogenase activity K04108 - 1.3.7.9 6.957e-266 852.0
PJD3_k127_4897394_1 Sulfatase K01133 - 3.1.6.6 4.885e-223 700.0
PJD3_k127_4897394_2 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 460.0
PJD3_k127_4897394_3 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 342.0
PJD3_k127_4897394_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006341 329.0
PJD3_k127_4897394_5 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004686 310.0
PJD3_k127_4897394_6 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000198 215.0
PJD3_k127_4950602_0 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005336 404.0
PJD3_k127_4950602_1 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 329.0
PJD3_k127_4950602_2 Putative heavy-metal chelation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008547 287.0
PJD3_k127_4950602_3 Membrane transport protein K07088 - - 0.00000000000000000000000000000000000000000000000000000000000000000005438 256.0
PJD3_k127_502548_0 Atp-dependent helicase K03578 - 3.6.4.13 0.0 1434.0
PJD3_k127_502548_1 Auxin Efflux Carrier K07088 - - 0.000000000000000000000000000000000000000000009915 175.0
PJD3_k127_502548_2 Lactonase, 7-bladed beta-propeller - - - 0.0000000005409 71.0
PJD3_k127_5034151_0 FAD binding domain K05712 - 1.14.13.127 3.841e-249 780.0
PJD3_k127_5034151_1 Bacterial transferase hexapeptide (six repeats) K02617,K08279 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003644 241.0
PJD3_k127_5034151_2 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000000000009521 222.0
PJD3_k127_5034151_3 Protein of unknown function (DUF2783) - - - 0.000000000000000002858 100.0
PJD3_k127_5042532_0 Orn/Lys/Arg decarboxylase, C-terminal domain K01584,K01585 - 4.1.1.19 0.0 1078.0
PJD3_k127_5042532_1 Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates K01426,K01455,K18540 - 3.5.1.100,3.5.1.4,3.5.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 416.0
PJD3_k127_5042532_2 Biotin carboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 328.0
PJD3_k127_5042532_3 transport system, fused permease - - - 0.000000000000000000000000000000000000003815 150.0
PJD3_k127_5042532_4 COG0589 Universal stress protein UspA and related nucleotide-binding proteins - - - 0.0000000000000000000000000000000000001204 146.0
PJD3_k127_5058379_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K06001 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006323 599.0
PJD3_k127_5058379_1 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770 - 4.6.1.12 0.000000000000000000000000000000000000000000000000000000000000007842 231.0
PJD3_k127_5058379_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.000000000000000000000000000000000000000000000000003479 189.0
PJD3_k127_5068779_0 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT K18139,K18903 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 417.0
PJD3_k127_5068779_1 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 329.0
PJD3_k127_5068779_2 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001414 265.0
PJD3_k127_5072741_0 Bacterial protein of unknown function (DUF885) - - - 1.35e-225 715.0
PJD3_k127_5072741_1 Lecithin:cholesterol acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 329.0
PJD3_k127_5072741_2 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000003083 193.0
PJD3_k127_5072741_3 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000003529 165.0
PJD3_k127_5072741_4 Integral membrane protein TerC family - - - 0.0000000000000233 79.0
PJD3_k127_5143574_0 Histidine kinase K07649 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 467.0
PJD3_k127_5143574_1 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 351.0
PJD3_k127_5143574_2 Transcriptional regulatory protein, C terminal K02483,K07666,K07774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000974 342.0
PJD3_k127_5185388_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 491.0
PJD3_k127_5185388_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000001534 143.0
PJD3_k127_5185388_2 AAA domain - - - 0.00000000000000000000000000000000002471 145.0
PJD3_k127_5185388_3 Nicotinamide mononucleotide transporter K03811 - - 0.000000000000000000000099 99.0
PJD3_k127_5208519_0 Highly conserved protein containing a thioredoxin domain K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 597.0
PJD3_k127_5208519_1 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 GO:0000166,GO:0000302,GO:0000305,GO:0003674,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0017076,GO:0019725,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0065008,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901700 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000943 267.0
PJD3_k127_5210588_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1129.0
PJD3_k127_5210588_1 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 479.0
PJD3_k127_5219589_0 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000000000000007406 213.0
PJD3_k127_5219589_1 - - - - 0.00000000000000000000000000000000000000000000000009828 192.0
PJD3_k127_5219589_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.0000000000000000000000117 100.0
PJD3_k127_5219589_3 Cysteine-rich secretory protein family - - - 0.00000000000000000000003026 108.0
PJD3_k127_5219589_4 pyridoxamine 5-phosphate - - - 0.00000000000000000000004861 112.0
PJD3_k127_5219589_5 Sel1-like repeats. K07126 - - 0.000000000000000000005187 100.0
PJD3_k127_5227100_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 421.0
PJD3_k127_5227100_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 396.0
PJD3_k127_5227187_0 phosphate transport system K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 464.0
PJD3_k127_5227187_1 PBP superfamily domain K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003956 474.0
PJD3_k127_5227187_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 457.0
PJD3_k127_5227187_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 413.0
PJD3_k127_5227187_4 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000002678 200.0
PJD3_k127_5227187_5 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000002974 175.0
PJD3_k127_5227187_6 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000006828 165.0
PJD3_k127_5227187_7 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000555 109.0
PJD3_k127_5273898_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 3.749e-198 640.0
PJD3_k127_5273898_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 559.0
PJD3_k127_5273898_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 494.0
PJD3_k127_5273898_3 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009981 273.0
PJD3_k127_5273898_4 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000005558 211.0
PJD3_k127_5273898_5 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000001242 108.0
PJD3_k127_5273898_6 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000000002531 81.0
PJD3_k127_5273898_7 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 GO:0000966,GO:0001682,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904 3.1.26.5 0.0008285 47.0
PJD3_k127_5275127_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 2.58e-289 912.0
PJD3_k127_5275127_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 375.0
PJD3_k127_5275127_2 fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000000000000000000000000000000423 194.0
PJD3_k127_5281256_0 KR domain K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 309.0
PJD3_k127_5281256_1 YhhN family - - - 0.00000000000000000000000000000000000000000000004604 177.0
PJD3_k127_5281256_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000008105 75.0
PJD3_k127_5281851_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.618e-308 955.0
PJD3_k127_5281851_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 3.309e-237 741.0
PJD3_k127_5281851_2 rieske 2fe-2s K00499 - 1.14.15.7 1.239e-195 618.0
PJD3_k127_5281851_3 metal-dependent hydrolase of the TIM-barrel fold K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 404.0
PJD3_k127_5281851_4 AMP-binding enzyme C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 385.0
PJD3_k127_5281851_5 Rhodanese Homology Domain K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005789 343.0
PJD3_k127_5281851_6 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002727 321.0
PJD3_k127_5281851_7 Divalent heavy-metal cations transporter K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001989 287.0
PJD3_k127_5281851_8 Acetoacetate decarboxylase (ADC) - - - 0.00000000000000000000000000003258 128.0
PJD3_k127_5281851_9 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000001207 86.0
PJD3_k127_5282461_0 aminopeptidase N K01256 - 3.4.11.2 0.0 1035.0
PJD3_k127_5282461_1 PFAM extracellular solute-binding protein family 1 K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004942 574.0
PJD3_k127_5282461_10 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.00000000000000000000000000000000000000000000009146 179.0
PJD3_k127_5282461_11 serine protease - - - 0.00000000000002644 76.0
PJD3_k127_5282461_2 Belongs to the arginase family K12255 - 3.5.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 567.0
PJD3_k127_5282461_3 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005368 528.0
PJD3_k127_5282461_4 TrkA-N domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 542.0
PJD3_k127_5282461_5 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 528.0
PJD3_k127_5282461_6 binding-protein-dependent transport systems inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 524.0
PJD3_k127_5282461_7 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 433.0
PJD3_k127_5282461_8 PFAM histone deacetylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 389.0
PJD3_k127_5282461_9 - - - - 0.000000000000000000000000000000000000000000000000000005074 194.0
PJD3_k127_5295398_0 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 359.0
PJD3_k127_5295398_1 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003897 300.0
PJD3_k127_5295398_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000008138 199.0
PJD3_k127_5297131_0 Domain of unknown function (DUF4382) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003617 282.0
PJD3_k127_5297131_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000001143 259.0
PJD3_k127_5297131_2 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.00000000000000000000000000000000000000000000000000000000003324 214.0
PJD3_k127_5297131_3 17 kDa surface antigen K06077 - - 0.00000000000000000000000000007953 121.0
PJD3_k127_5297289_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.096e-294 910.0
PJD3_k127_5297289_1 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 514.0
PJD3_k127_5297289_10 Protein of unknown function (DUF2909) - - - 0.000000000000000000003398 94.0
PJD3_k127_5297289_11 Protein of unknown function (DUF2970) - - - 0.00007286 54.0
PJD3_k127_5297289_2 COG1845 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 383.0
PJD3_k127_5297289_3 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003044 370.0
PJD3_k127_5297289_4 cytochrome C oxidase K02258 - - 0.000000000000000000000000000000000000000000000000000000000000000002184 234.0
PJD3_k127_5297289_5 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000000000000000002872 209.0
PJD3_k127_5297289_6 Involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000004951 177.0
PJD3_k127_5297289_7 signal sequence binding - - - 0.00000000000000000000000000000000000000000000001819 177.0
PJD3_k127_5297289_8 SURF1-like protein K14998 - - 0.0000000000000000000000000000000000000000006458 167.0
PJD3_k127_5297289_9 Cytochrome oxidase assembly K02259 - - 0.000000000000000000000000000000165 134.0
PJD3_k127_5298499_0 ABC transporter transmembrane region K06147 - - 3.453e-218 696.0
PJD3_k127_5298499_1 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 548.0
PJD3_k127_5298499_2 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 443.0
PJD3_k127_5298499_3 Mannitol dehydrogenase Rossmann domain K00040 - 1.1.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007987 432.0
PJD3_k127_5298499_4 TOBE domain K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 355.0
PJD3_k127_5298499_5 PFAM Short-chain dehydrogenase reductase SDR K18335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 308.0
PJD3_k127_5298499_6 COG1177 ABC-type spermidine putrescine transport system, permease component II K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 305.0
PJD3_k127_5298499_7 Binding-protein-dependent transport system inner membrane component K02053 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005517 265.0
PJD3_k127_5298499_8 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000002108 145.0
PJD3_k127_5300051_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 2.984e-224 709.0
PJD3_k127_5300051_1 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 375.0
PJD3_k127_5300051_2 single-stranded DNA 5'-3' exodeoxyribonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008435 291.0
PJD3_k127_5300051_3 Histidine kinase-like ATPases K01768,K02488,K17763 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65,4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 307.0
PJD3_k127_5300051_4 TIGRFAM TIGR00268 family protein K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001044 282.0
PJD3_k127_5300051_5 AIR carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000000432 226.0
PJD3_k127_5300051_6 protein histidine kinase activity K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000003231 209.0
PJD3_k127_5300240_0 fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 282.0
PJD3_k127_5300240_1 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006549 282.0
PJD3_k127_5302551_0 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 1.345e-207 652.0
PJD3_k127_5302551_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000335 122.0
PJD3_k127_5302551_2 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000000000000000008595 85.0
PJD3_k127_5313067_0 Malic enzyme K00029 - 1.1.1.40 6.822e-242 755.0
PJD3_k127_5313067_1 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 424.0
PJD3_k127_5314903_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1303.0
PJD3_k127_5314903_1 Tripartite tricarboxylate transporter TctA family - - - 9.292e-229 717.0
PJD3_k127_5314903_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 2.728e-200 633.0
PJD3_k127_5314903_3 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 576.0
PJD3_k127_5314903_4 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001275 277.0
PJD3_k127_5314903_5 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001407 255.0
PJD3_k127_5314903_6 LysE type translocator K05834 - - 0.00000000000000000000000000000000000000000000000000000000000000000005543 239.0
PJD3_k127_5314903_7 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000000000000000002133 138.0
PJD3_k127_5314903_8 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K01560 - 3.8.1.2 0.0000000000000000000000000007403 113.0
PJD3_k127_5322603_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.972e-305 946.0
PJD3_k127_5322603_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.225e-207 650.0
PJD3_k127_5322603_10 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 369.0
PJD3_k127_5322603_11 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 313.0
PJD3_k127_5322603_12 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002603 252.0
PJD3_k127_5322603_13 N-terminal half of MaoC dehydratase K09709 - 4.2.1.153 0.000000000000000000000000000000000000000000000000000000000000000000006694 248.0
PJD3_k127_5322603_14 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000122 100.0
PJD3_k127_5322603_15 O-Antigen ligase K02847 - - 0.00000000001674 78.0
PJD3_k127_5322603_16 Predicted metal-dependent hydrolase K07044 - - 0.0000000003651 68.0
PJD3_k127_5322603_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 606.0
PJD3_k127_5322603_3 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 592.0
PJD3_k127_5322603_4 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 451.0
PJD3_k127_5322603_5 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 423.0
PJD3_k127_5322603_6 Thioesterase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009931 442.0
PJD3_k127_5322603_7 NMT1-like family K15553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008753 407.0
PJD3_k127_5322603_8 Cupin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 392.0
PJD3_k127_5322603_9 Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007059 362.0
PJD3_k127_5337187_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009453 458.0
PJD3_k127_5337187_1 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000943 259.0
PJD3_k127_5337187_2 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000000004505 180.0
PJD3_k127_5337187_3 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000000000000003938 175.0
PJD3_k127_5337187_4 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000002053 144.0
PJD3_k127_5338699_0 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001988 267.0
PJD3_k127_5338699_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 0.0000000000000000000000000000000000000000000000000000000000000000001853 243.0
PJD3_k127_5338699_2 3-oxoacid CoA-transferase, A subunit K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000002585 174.0
PJD3_k127_5338699_3 Histidine kinase K07675 - 2.7.13.3 0.00000000001201 74.0
PJD3_k127_5342286_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 5.547e-250 781.0
PJD3_k127_5342286_1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 422.0
PJD3_k127_5342286_2 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003655 356.0
PJD3_k127_5342286_3 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000008417 154.0
PJD3_k127_5342286_4 Tripartite ATP-independent periplasmic transporters, DctQ component K21394 - - 0.00000000000000000000000000000000000005881 148.0
PJD3_k127_5343811_0 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 469.0
PJD3_k127_5343811_1 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 382.0
PJD3_k127_5343811_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 366.0
PJD3_k127_5343811_3 Sugar (and other) transporter K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006946 327.0
PJD3_k127_5343811_4 Amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 332.0
PJD3_k127_5358034_0 membrane - - - 0.000000000000000000000000000000000000003207 150.0
PJD3_k127_5358034_1 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000004887 108.0
PJD3_k127_5358034_2 Protein of unknown function (DUF3108) - - - 0.00000000000000000008831 100.0
PJD3_k127_536003_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 6.193e-319 984.0
PJD3_k127_536003_1 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 550.0
PJD3_k127_536003_2 oxidoreductase K04090 - 1.2.7.8 0.000000000000000000000000000000000000000000000000000000000006178 210.0
PJD3_k127_5372939_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 535.0
PJD3_k127_5372939_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 471.0
PJD3_k127_5372939_10 Zinc-finger domain - - - 0.000000000000000000002904 104.0
PJD3_k127_5372939_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 444.0
PJD3_k127_5372939_3 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003065 392.0
PJD3_k127_5372939_4 Alpha beta hydrolase K07019 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 383.0
PJD3_k127_5372939_5 abc transporter K02003,K05685 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002675 328.0
PJD3_k127_5372939_6 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 293.0
PJD3_k127_5372939_7 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000001852 242.0
PJD3_k127_5372939_8 Protein of unknown function (DUF2946) - - - 0.00000000000000000000000000000000009764 145.0
PJD3_k127_5372939_9 SnoaL-like domain - - - 0.0000000000000000000000000000000002714 139.0
PJD3_k127_5379245_0 C4-dicarboxylate anaerobic carrier - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 571.0
PJD3_k127_5379245_1 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 496.0
PJD3_k127_5379245_2 extracellular solute-binding protein, family 7 K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 425.0
PJD3_k127_5379245_3 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 401.0
PJD3_k127_5379245_4 EVE domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003962 237.0
PJD3_k127_5379245_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000009693 235.0
PJD3_k127_5379245_6 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000001736 183.0
PJD3_k127_5379245_7 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.000000000000000000000000000000000002799 145.0
PJD3_k127_5379245_8 Cell division protein ZapA K09888 - - 0.0000000000001774 77.0
PJD3_k127_5381512_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 564.0
PJD3_k127_5381512_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004698 433.0
PJD3_k127_5392156_0 Ribonuclease E/G family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007713 400.0
PJD3_k127_5392156_1 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000356 229.0
PJD3_k127_5392156_2 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000000000000000002016 190.0
PJD3_k127_5392156_3 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000000001718 190.0
PJD3_k127_5392156_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000003741 108.0
PJD3_k127_5396604_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 GO:0000003,GO:0001655,GO:0001822,GO:0001889,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004457,GO:0004611,GO:0004613,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006066,GO:0006071,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006094,GO:0006109,GO:0006111,GO:0006113,GO:0006139,GO:0006163,GO:0006464,GO:0006629,GO:0006631,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007296,GO:0007610,GO:0008150,GO:0008152,GO:0008906,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009410,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010646,GO:0010647,GO:0010675,GO:0010906,GO:0014070,GO:0014074,GO:0015036,GO:0015980,GO:0016042,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016054,GO:0016301,GO:0016310,GO:0016491,GO:0016614,GO:0016651,GO:0016667,GO:0016668,GO:0016740,GO:0016772,GO:0016773,GO:0016829,GO:0016830,GO:0016831,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018991,GO:0019098,GO:0019222,GO:0019249,GO:0019318,GO:0019319,GO:0019320,GO:0019362,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019516,GO:0019538,GO:0019541,GO:0019543,GO:0019563,GO:0019626,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019751,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030145,GO:0030154,GO:0030703,GO:0030855,GO:0031323,GO:0031667,GO:0031960,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0033993,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0036211,GO:0042221,GO:0042493,GO:0042594,GO:0042737,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043434,GO:0043436,GO:0043687,GO:0043900,GO:0043903,GO:0043949,GO:0043950,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045471,GO:0046031,GO:0046034,GO:0046164,GO:0046174,GO:0046364,GO:0046365,GO:0046394,GO:0046395,GO:0046434,GO:0046459,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046872,GO:0046914,GO:0047134,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048545,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051186,GO:0051384,GO:0051591,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060429,GO:0061005,GO:0061008,GO:0062012,GO:0065007,GO:0070013,GO:0070365,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0071840,GO:0072001,GO:0072071,GO:0072329,GO:0072330,GO:0072521,GO:0072524,GO:0080090,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:1901135,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533 4.1.1.32 0.0 1017.0
PJD3_k127_5396604_1 Bacterial extracellular solute-binding protein K02055 - - 5.783e-204 640.0
PJD3_k127_5396604_2 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052,K11072 - 3.6.3.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003245 431.0
PJD3_k127_5396604_3 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 412.0
PJD3_k127_5396604_4 belongs to the aldehyde dehydrogenase family K00137 GO:0003674,GO:0003824,GO:0004029,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009445,GO:0009447,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0019145,GO:0033737,GO:0034641,GO:0042402,GO:0042802,GO:0044106,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071704,GO:0097164,GO:1901564,GO:1901565,GO:1901575 1.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 359.0
PJD3_k127_5396604_5 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 330.0
PJD3_k127_5396604_7 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000005887 65.0
PJD3_k127_5397059_0 Dynamin family - - - 9.913e-210 678.0
PJD3_k127_5397059_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 589.0
PJD3_k127_5397059_10 A G-specific adenine glycosylase K03575 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005425 378.0
PJD3_k127_5397059_11 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006127 298.0
PJD3_k127_5397059_12 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000007493 245.0
PJD3_k127_5397059_13 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000001176 228.0
PJD3_k127_5397059_14 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000000000000000005041 220.0
PJD3_k127_5397059_15 PFAM peptidase S16 lon domain protein K07157 - - 0.000000000000000000000000000000000000000000000000000302 192.0
PJD3_k127_5397059_16 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.00000000000000000000000000000000000000000000004332 178.0
PJD3_k127_5397059_17 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.0000000000000000000000000000000000000000000005228 186.0
PJD3_k127_5397059_18 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 - 3.1.3.45 0.000000000000000000000000000000000000000000006775 169.0
PJD3_k127_5397059_19 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000001382 153.0
PJD3_k127_5397059_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009976 515.0
PJD3_k127_5397059_20 Protein of unknown function (DUF1326) - - - 0.0000000000000000000000000000000000003371 141.0
PJD3_k127_5397059_21 sigma 54 modulation protein K05808 - - 0.0000000000000000000000000000000000003865 142.0
PJD3_k127_5397059_22 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.0000000000000000000000004148 123.0
PJD3_k127_5397059_23 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009279,GO:0010876,GO:0016020,GO:0019538,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0033218,GO:0034613,GO:0042157,GO:0042277,GO:0043170,GO:0044238,GO:0044462,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0051668,GO:0070727,GO:0071704,GO:0071723,GO:0071944,GO:0072657,GO:1901564 - 0.0000000006071 70.0
PJD3_k127_5397059_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 495.0
PJD3_k127_5397059_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 424.0
PJD3_k127_5397059_5 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 406.0
PJD3_k127_5397059_6 transport system, ATPase component K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009434 383.0
PJD3_k127_5397059_7 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 377.0
PJD3_k127_5397059_8 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 373.0
PJD3_k127_5397059_9 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 353.0
PJD3_k127_5403373_0 nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC K02567 - - 0.0 1459.0
PJD3_k127_5403373_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 6.572e-194 609.0
PJD3_k127_5403373_10 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000000000000000000000000000000000000000000000009625 198.0
PJD3_k127_5403373_11 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000001382 184.0
PJD3_k127_5403373_12 Electron transfer subunit of the periplasmic nitrate reductase complex NapAB K02568 - - 0.00000000000000000000000000000000000000000000000002647 183.0
PJD3_k127_5403373_13 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000001301 136.0
PJD3_k127_5403373_14 ATP synthase I chain K02116 - - 0.000000000005092 72.0
PJD3_k127_5403373_15 protein involved in formation of periplasmic nitrate reductase K02570 - - 0.0008835 45.0
PJD3_k127_5403373_2 4Fe-4S binding domain K02574 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006607 419.0
PJD3_k127_5403373_3 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 412.0
PJD3_k127_5403373_4 MauM NapG family ferredoxin-type protein K02573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005194 395.0
PJD3_k127_5403373_5 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003833 345.0
PJD3_k127_5403373_6 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 331.0
PJD3_k127_5403373_7 cytochrome c-type protein K02569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000651 314.0
PJD3_k127_5403373_8 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001364 275.0
PJD3_k127_5403373_9 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.00000000000000000000000000000000000000000000000000000000009795 210.0
PJD3_k127_5415999_0 Methylmalonyl-CoA mutase K01847,K01848,K14447,K20906 - 5.4.99.2,5.4.99.63,5.4.99.64 1.858e-251 781.0
PJD3_k127_5415999_1 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 320.0
PJD3_k127_5415999_2 [2Fe-2S] binding domain - - - 0.00000000000000000000000000000000000004064 146.0
PJD3_k127_5431248_0 COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits K04090 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004509 499.0
PJD3_k127_5431248_1 Haloacid dehalogenase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 363.0
PJD3_k127_5431248_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 344.0
PJD3_k127_5431248_3 protein involved in response to NO K07234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008686 319.0
PJD3_k127_5431248_4 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004944 267.0
PJD3_k127_5431248_5 Protein of unknown function (DUF3750) - - - 0.000000000000000000000000000000000000000000000000000000000000000000004237 243.0
PJD3_k127_5431248_6 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.000000000000000000000000000000000000000000000000000000000000000000006492 245.0
PJD3_k127_5431248_7 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000001278 78.0
PJD3_k127_5431808_0 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004104 399.0
PJD3_k127_5431808_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002496 387.0
PJD3_k127_5431808_2 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 325.0
PJD3_k127_5431808_3 Shikimate kinase K00851 - 2.7.1.12 0.00000000000000000000000000000000000000000000451 181.0
PJD3_k127_5435736_0 DNA polymerase K02337 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 506.0
PJD3_k127_5435736_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000007015 209.0
PJD3_k127_5441664_0 transport system, fused permease components - - - 3.205e-213 679.0
PJD3_k127_5441664_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 529.0
PJD3_k127_5441664_2 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000371 396.0
PJD3_k127_5441664_3 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 379.0
PJD3_k127_5441664_4 Belongs to the peptidase S1C family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002282 261.0
PJD3_k127_5441664_5 TRAP transporter solute receptor - - - 0.00000000000000000000000000000000000000000000000000000000002994 208.0
PJD3_k127_5455375_0 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 379.0
PJD3_k127_5455375_1 Alpha beta K07018 - - 0.0000000000000000000000000000000000000000000000000000000000000000005926 239.0
PJD3_k127_5455375_2 Ferredoxin - - - 0.00000000000000000000000000000000000000000189 167.0
PJD3_k127_5455375_3 VanZ like family - - - 0.000000000000000000000000000000000000000007163 171.0
PJD3_k127_5455375_4 biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.0000000000000000000000000000001083 137.0
PJD3_k127_5455375_5 Domain of unknown function (DUF1508) K09946 - - 0.00000000000000000000000000003384 120.0
PJD3_k127_5455375_6 - - - - 0.000000000009586 74.0
PJD3_k127_5455375_7 Sporulation domain protein - - - 0.000007168 58.0
PJD3_k127_546826_0 PFAM PfkB domain protein K00852,K00856 - 2.7.1.15,2.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009794 393.0
PJD3_k127_546826_1 YGGT family K02221 - - 0.00000000000000000000000000005628 122.0
PJD3_k127_546826_2 Protein of unknown function (DUF3426) - - - 0.000000000000000000384 92.0
PJD3_k127_5482324_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 2.57e-263 820.0
PJD3_k127_5482324_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 2.237e-244 764.0
PJD3_k127_5482324_2 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005196 355.0
PJD3_k127_5482324_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000000003972 147.0
PJD3_k127_5482324_4 Mut7-C ubiquitin - - - 0.0000000000000000000000008199 108.0
PJD3_k127_5482324_5 - - - - 0.00009429 51.0
PJD3_k127_5495560_0 PFAM isocitrate lyase and phosphorylmutase K01637 - 4.1.3.1 1.616e-241 752.0
PJD3_k127_5495560_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18145 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 384.0
PJD3_k127_5495560_2 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0000000000000000000000000000000000000000000000000000125 192.0
PJD3_k127_5495560_3 SMART cyclic nucleotide-binding K10914 - - 0.000000000000000000000000000000006963 133.0
PJD3_k127_5495560_4 protein conserved in bacteria - - - 0.000000000000000000000000003458 115.0
PJD3_k127_5497195_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009186 338.0
PJD3_k127_5497195_1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM K03519,K16878 - 1.2.5.3,1.3.99.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 291.0
PJD3_k127_5497195_2 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000001159 246.0
PJD3_k127_5497195_3 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.0001561 44.0
PJD3_k127_5517803_0 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 600.0
PJD3_k127_5517803_1 TRAP transporter, 4TM 12TM fusion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 567.0
PJD3_k127_5517803_10 Pyridine nucleotide-disulphide oxidoreductase K07222 - - 0.0000000000000000000000000004392 115.0
PJD3_k127_5517803_11 response regulator, receiver - - - 0.00000000000001222 87.0
PJD3_k127_5517803_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 528.0
PJD3_k127_5517803_3 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002181 482.0
PJD3_k127_5517803_4 Aldo Keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 362.0
PJD3_k127_5517803_5 Flavin-binding monooxygenase-like K07222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001645 334.0
PJD3_k127_5517803_6 TRAP transporter, solute receptor (TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000006509 246.0
PJD3_k127_5517803_7 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000004472 199.0
PJD3_k127_5517803_8 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000001864 164.0
PJD3_k127_5517803_9 Domain of unknown function (DUF4387) - - - 0.0000000000000000000000000000000002615 147.0
PJD3_k127_5520390_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 8.469e-219 693.0
PJD3_k127_5520390_1 FAD linked K00004,K00102 GO:0003674,GO:0003824,GO:0004457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008720,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046034,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.1.1.303,1.1.1.4,1.1.2.4 0.000000000000000000007817 92.0
PJD3_k127_5523271_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 3.654e-312 965.0
PJD3_k127_5523271_1 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 2.817e-279 871.0
PJD3_k127_5523271_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002239 537.0
PJD3_k127_5523271_3 Oxidoreductase K19746 - 1.4.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 473.0
PJD3_k127_5523271_4 Amidase K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 483.0
PJD3_k127_5523271_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.00000000000000000000000000000000000000000001051 186.0
PJD3_k127_5532770_0 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 2.515e-212 678.0
PJD3_k127_5532770_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 2.415e-197 627.0
PJD3_k127_5532770_2 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 398.0
PJD3_k127_5532770_3 Polyhydroxyalkanoate synthesis repressor PhaR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004386 268.0
PJD3_k127_5532770_4 Belongs to the multicopper oxidase YfiH RL5 family K05810 GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016679,GO:0016682,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0046983,GO:0055114 - 0.000000000000000000000000000000000000000000000000000002837 196.0
PJD3_k127_5532770_5 - - - - 0.0000000000008586 72.0
PJD3_k127_5532770_6 FAD dependent oxidoreductase - - - 0.0004641 51.0
PJD3_k127_55408_0 PFAM MmgE PrpD family protein - - - 2.749e-247 775.0
PJD3_k127_55408_1 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 4.676e-206 648.0
PJD3_k127_55408_2 ABC-2 family transporter protein K01992 - - 9.604e-201 629.0
PJD3_k127_55408_3 PFAM sodium hydrogen exchanger K03316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004307 571.0
PJD3_k127_55408_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 482.0
PJD3_k127_55408_5 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007868 381.0
PJD3_k127_55408_6 HlyD family secretion protein K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005999 381.0
PJD3_k127_55408_7 Aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000000000000000000000000000001375 233.0
PJD3_k127_55408_8 - - - - 0.000000000000000000000000000000000000000000000000000000000004958 212.0
PJD3_k127_55408_9 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000003864 162.0
PJD3_k127_5545724_0 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009282 512.0
PJD3_k127_5545724_1 ABC-type dipeptide transport system periplasmic component K02035,K13889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 490.0
PJD3_k127_5545724_2 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000433 263.0
PJD3_k127_5549460_0 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000931 617.0
PJD3_k127_5549460_1 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000000000000000000003198 145.0
PJD3_k127_5549460_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.000000000000000000000000000000000001715 157.0
PJD3_k127_5551751_0 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 550.0
PJD3_k127_5551751_1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003783 497.0
PJD3_k127_5551751_10 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000000003873 193.0
PJD3_k127_5551751_11 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.00000000000000000000000000000000000000000005804 167.0
PJD3_k127_5551751_12 - - GO:0008150,GO:0009605,GO:0009607,GO:0043207,GO:0044403,GO:0044419,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0075136 - 0.00000000000000000007125 91.0
PJD3_k127_5551751_2 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 421.0
PJD3_k127_5551751_3 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004582 344.0
PJD3_k127_5551751_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006867 334.0
PJD3_k127_5551751_5 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000032 269.0
PJD3_k127_5551751_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003102 260.0
PJD3_k127_5551751_7 Aldehyde K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 0.00000000000000000000000000000000000000000000000000000000000000001909 243.0
PJD3_k127_5551751_8 Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000001874 217.0
PJD3_k127_5551751_9 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000001754 226.0
PJD3_k127_5576200_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 1.235e-285 892.0
PJD3_k127_5576200_1 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 381.0
PJD3_k127_5576200_2 GTP-binding signal recognition particle K02404 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 326.0
PJD3_k127_5576200_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes K02405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 291.0
PJD3_k127_5576200_4 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000494 235.0
PJD3_k127_5576200_5 Cellulose biosynthesis protein BcsQ K04562 - - 0.0000000000000004129 89.0
PJD3_k127_5576200_6 PFAM Anti-sigma-28 factor, FlgM K02398 - - 0.00003535 51.0
PJD3_k127_5591521_0 PFAM aminotransferase class I and II K00832 - 2.6.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 437.0
PJD3_k127_5591521_1 Coenzyme A transferase K01040 - 2.8.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003025 318.0
PJD3_k127_5591521_2 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 299.0
PJD3_k127_5591521_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000009702 165.0
PJD3_k127_5591521_4 Transport permease protein K01992 - - 0.000000000000000000000000001194 115.0
PJD3_k127_5657936_0 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 3.817e-201 635.0
PJD3_k127_5657936_1 ABC transporter substrate-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001013 244.0
PJD3_k127_56596_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007764 335.0
PJD3_k127_56596_1 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001525 264.0
PJD3_k127_56596_2 endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000004636 149.0
PJD3_k127_56596_3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000003128 114.0
PJD3_k127_56596_4 TM2 domain - - - 0.000000000009969 71.0
PJD3_k127_5669540_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1312.0
PJD3_k127_5669540_1 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003254 486.0
PJD3_k127_5669540_10 long-chain fatty acid transport protein - - - 0.00000000000000000000000000000000000000000000000000000000001953 218.0
PJD3_k127_5669540_11 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000009192 206.0
PJD3_k127_5669540_12 Two component transcriptional regulator, LuxR family - - - 0.00000000000000000000000000000000000000000000000000001393 198.0
PJD3_k127_5669540_14 DSBA oxidoreductase - - - 0.00000000000000000000000000000000000000000001911 182.0
PJD3_k127_5669540_15 Chalcone isomerase-like - - - 0.000000000000000000000000000000000004371 146.0
PJD3_k127_5669540_16 MFS/sugar transport protein - - - 0.0000000000000000000000000000002684 138.0
PJD3_k127_5669540_17 Drug metabolite transporter - - - 0.0000000000000000000004112 98.0
PJD3_k127_5669540_18 CBS-domain-containing membrane protein K07168 - - 0.000000000000000000001509 105.0
PJD3_k127_5669540_19 LTXXQ motif family protein - - - 0.00000000000000001348 92.0
PJD3_k127_5669540_2 cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008798 443.0
PJD3_k127_5669540_3 protocatechuate 3,4-dioxygenase beta subunit K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 408.0
PJD3_k127_5669540_4 Histidine kinase K05962 - 2.7.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006087 409.0
PJD3_k127_5669540_5 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005152 346.0
PJD3_k127_5669540_6 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 332.0
PJD3_k127_5669540_7 B12 binding domain K22491 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 309.0
PJD3_k127_5669540_8 Dioxygenase K00448 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000157 265.0
PJD3_k127_5669540_9 Protein of unknown function (DUF1365) K09701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003912 263.0
PJD3_k127_5706337_0 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003629 586.0
PJD3_k127_5706337_1 Ankyrin repeats (many copies) K06867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001992 267.0
PJD3_k127_5706337_2 PFAM response regulator receiver - - - 0.000000000000000000000000000000000000000000005243 171.0
PJD3_k127_5706337_3 MaoC like domain - - - 0.000000000000000000000000000000000000001112 153.0
PJD3_k127_5706337_4 - - - - 0.000000000000000000000000000000000000001284 154.0
PJD3_k127_5706337_5 PFAM response regulator receiver - - - 0.0000000000000000000000000008455 112.0
PJD3_k127_5724368_0 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 554.0
PJD3_k127_5724368_1 PFAM ABC transporter related K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 464.0
PJD3_k127_5724368_2 NMT1-like family K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002798 438.0
PJD3_k127_5724368_3 binding-protein-dependent transport systems inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003823 419.0
PJD3_k127_5724368_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000277 69.0
PJD3_k127_5730782_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008403 567.0
PJD3_k127_5730782_1 Protein of unknown function (DUF1631) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 306.0
PJD3_k127_5730782_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000001842 203.0
PJD3_k127_5730782_3 Belongs to the transketolase family K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000001214 165.0
PJD3_k127_5730782_4 Guanyl-specific ribonuclease Sa K01167 - 3.1.27.3 0.000000000000000000000000000000000000000002472 159.0
PJD3_k127_5730782_5 Barstar (Barnase inhibitor) - - - 0.00000000000000000000000000000000000000001583 168.0
PJD3_k127_5736084_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 594.0
PJD3_k127_5736084_1 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000001986 221.0
PJD3_k127_5737386_0 TIGRFAM Drug resistance transporter Bcr CflA subfamily K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007283 569.0
PJD3_k127_5737386_1 quinone oxidoreductase, YhdH YhfP family K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002247 357.0
PJD3_k127_5737386_2 Transcriptional regulator K03566 - - 0.000000000000000000000000000000000000000000000000000008342 202.0
PJD3_k127_5757171_0 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002036 273.0
PJD3_k127_5757171_1 Transcriptional regulatory protein, C terminal K07659 - - 0.000000000000000000000000000000000000000000000000000000000000000000009135 241.0
PJD3_k127_5757231_0 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 617.0
PJD3_k127_5757231_1 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004621 571.0
PJD3_k127_5757231_2 PFAM cyclase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005139 526.0
PJD3_k127_5757231_3 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005122 452.0
PJD3_k127_5757231_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004674 247.0
PJD3_k127_5830315_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000003563 229.0
PJD3_k127_5830315_1 surface antigen K07278 - - 0.000000000000000007569 83.0
PJD3_k127_5844012_0 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 607.0
PJD3_k127_5844012_1 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007533 440.0
PJD3_k127_585652_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008695 584.0
PJD3_k127_585652_1 Proteasome K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000133 265.0
PJD3_k127_585652_2 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.000000000000002694 85.0
PJD3_k127_5880240_0 Belongs to the thiolase family K00626 - 2.3.1.9 4.142e-197 619.0
PJD3_k127_5880240_1 Alpha beta hydrolase K22318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 396.0
PJD3_k127_5880240_2 KR domain K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009447 337.0
PJD3_k127_5880240_3 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.0000000000000000000000000000000000000000000000000000000000000001432 225.0
PJD3_k127_5880240_4 PFAM thioesterase superfamily protein - - - 0.0000000000000000000000000000000002899 136.0
PJD3_k127_5915374_0 type II and III secretion system protein K02280 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 364.0
PJD3_k127_5915374_1 Secretion system protein K02283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006643 325.0
PJD3_k127_5915374_2 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000000006732 245.0
PJD3_k127_5920479_0 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003069 520.0
PJD3_k127_5920479_1 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 504.0
PJD3_k127_5920479_2 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 337.0
PJD3_k127_5920479_3 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005632 321.0
PJD3_k127_5920479_4 PIN domain K07064 GO:0008150,GO:0040008,GO:0045926,GO:0048519,GO:0050789,GO:0065007 - 0.00000000000000000000000000000000000003403 149.0
PJD3_k127_5920479_5 Bacterial antitoxin of type II TA system, VapB - - - 0.0009967 46.0
PJD3_k127_5920508_0 PFAM FAD linked oxidase domain protein K00102,K03777 - 1.1.2.4,1.1.5.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005783 591.0
PJD3_k127_5920508_1 Phosphoenolpyruvate phosphomutase - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464 - 0.00005272 48.0
PJD3_k127_5936091_0 ABC-type dipeptide transport system periplasmic component K02035 - - 6.24e-297 917.0
PJD3_k127_5936091_1 Putative serine dehydratase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 535.0
PJD3_k127_5936091_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 493.0
PJD3_k127_5936091_3 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 447.0
PJD3_k127_5936091_4 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007963 372.0
PJD3_k127_5936091_5 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007083 295.0
PJD3_k127_5936091_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000000003523 232.0
PJD3_k127_5939211_0 glutaminyl-tRNA synthetase K01886 - 6.1.1.18 1.531e-239 753.0
PJD3_k127_5939211_1 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000103 168.0
PJD3_k127_5939405_0 Major facilitator Superfamily K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009368 566.0
PJD3_k127_5939405_1 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002067 481.0
PJD3_k127_5939405_2 DUF218 domain - - - 0.0000000000000000000000000000000000000000001853 168.0
PJD3_k127_5948372_0 COG0154 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit and related amidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009245 572.0
PJD3_k127_5948372_1 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 284.0
PJD3_k127_5950093_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.123e-288 895.0
PJD3_k127_5950093_1 transport system, fused permease components - - - 4.717e-274 862.0
PJD3_k127_5950093_10 ABC-type nitrate sulfonate bicarbonate transport system permease component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007788 415.0
PJD3_k127_5950093_11 PFAM ABC transporter related K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 388.0
PJD3_k127_5950093_12 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 391.0
PJD3_k127_5950093_13 O-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 351.0
PJD3_k127_5950093_14 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007487 289.0
PJD3_k127_5950093_15 histidine utilization repressor K05836 - - 0.000000000000000000000000000000000000000000000000000000000003988 216.0
PJD3_k127_5950093_16 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000004971 194.0
PJD3_k127_5950093_17 Thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000006194 178.0
PJD3_k127_5950093_18 transcriptional - - - 0.000000000000000000000000000000000000000007585 158.0
PJD3_k127_5950093_19 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000002095 119.0
PJD3_k127_5950093_2 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 3.056e-254 797.0
PJD3_k127_5950093_20 HutD K09975 - - 0.00000000000006154 80.0
PJD3_k127_5950093_3 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 6.615e-225 700.0
PJD3_k127_5950093_4 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 605.0
PJD3_k127_5950093_5 Histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 590.0
PJD3_k127_5950093_6 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 560.0
PJD3_k127_5950093_7 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 448.0
PJD3_k127_5950093_8 PFAM Substrate-binding region of ABC-type glycine betaine transport system K02051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 481.0
PJD3_k127_5950093_9 transport system periplasmic component K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 426.0
PJD3_k127_5951506_0 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 580.0
PJD3_k127_5951506_1 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006689 547.0
PJD3_k127_5951506_2 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009115 264.0
PJD3_k127_5951506_3 Domain of unknown function (DUF4396) - - - 0.0000000000000000000000000000000000000000000000000000009968 198.0
PJD3_k127_5951506_4 TIGRFAM Cu(I)-responsive transcriptional regulator K19591,K19592 - - 0.00000000000000000000000000000000000000000000006222 175.0
PJD3_k127_5953391_0 PFAM NUDIX hydrolase K07455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006043 595.0
PJD3_k127_5953391_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000005701 156.0
PJD3_k127_5953391_2 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000005698 88.0
PJD3_k127_5953422_0 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 0.0 1557.0
PJD3_k127_5953422_1 Convertase P-domain protein K20755 - 3.4.21.121 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006002 321.0
PJD3_k127_59552_0 Histidine kinase K02482 - 2.7.13.3 4.302e-218 689.0
PJD3_k127_59552_1 Pyridoxal phosphate biosynthetic protein PdxA K22024 - 1.1.1.408,1.1.1.409 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 404.0
PJD3_k127_59552_2 protein conserved in bacteria K22129 - 2.7.1.219,2.7.1.220 0.0000000000000000000003573 104.0
PJD3_k127_595716_0 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 522.0
PJD3_k127_595716_1 Belongs to the ABC transporter superfamily K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 427.0
PJD3_k127_595716_2 Belongs to the ABC transporter superfamily K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008449 412.0
PJD3_k127_595716_3 DegT/DnrJ/EryC1/StrS aminotransferase family K00812,K12252 - 2.6.1.1,2.6.1.84 0.000000000000000000000000000000000000000000002232 170.0
PJD3_k127_595716_4 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000004531 150.0
PJD3_k127_5966843_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1313.0
PJD3_k127_5966843_1 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 2.916e-308 954.0
PJD3_k127_5966843_10 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 335.0
PJD3_k127_5966843_11 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 334.0
PJD3_k127_5966843_12 Redoxin K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000001894 258.0
PJD3_k127_5966843_13 Peptidase M23 K08259 - 3.4.24.75 0.00000000000000000000000000000000000000000000000000000000000000000000000087 261.0
PJD3_k127_5966843_14 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000001711 231.0
PJD3_k127_5966843_15 Thiamine monophosphate synthase K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000001642 184.0
PJD3_k127_5966843_16 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000000002931 79.0
PJD3_k127_5966843_17 - - - - 0.000000000001748 73.0
PJD3_k127_5966843_2 type II secretion system protein E K02454,K02504,K02652 - - 3.574e-259 811.0
PJD3_k127_5966843_3 Type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001683 613.0
PJD3_k127_5966843_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 544.0
PJD3_k127_5966843_5 CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 495.0
PJD3_k127_5966843_6 ATPase (AAA superfamily) K06923 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 441.0
PJD3_k127_5966843_7 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 427.0
PJD3_k127_5966843_8 abc transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000306 404.0
PJD3_k127_5966843_9 Type IV leader peptidase family K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 369.0
PJD3_k127_5977174_0 type II secretion system protein E K02454 - - 1.301e-247 772.0
PJD3_k127_5977174_1 General secretion pathway protein F K02455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 454.0
PJD3_k127_5977174_2 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001715 261.0
PJD3_k127_5977174_3 general secretion pathway protein D K02453 - - 0.0000000000000000000000000000000000000004326 154.0
PJD3_k127_5977174_4 Major facilitator - - - 0.00000000000000000000000000000008823 139.0
PJD3_k127_5980866_0 fumarate reductase succinate dehydrogenase flavoprotein domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 594.0
PJD3_k127_5980866_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 548.0
PJD3_k127_5980866_10 COG0517 FOG CBS domain - - - 0.000000000000000000000000000000000006184 143.0
PJD3_k127_5980866_11 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347,K03614 - 1.6.5.8 0.0000000000000000002477 98.0
PJD3_k127_5980866_2 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084 503.0
PJD3_k127_5980866_3 COG2871 Na -transporting NADH ubiquinone oxidoreductase, subunit NqrF K00351,K16246 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003525 427.0
PJD3_k127_5980866_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K00457 - 1.13.11.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 386.0
PJD3_k127_5980866_5 haloacid dehalogenase-like hydrolase K02203 - 2.7.1.39,3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 308.0
PJD3_k127_5980866_6 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0051179,GO:0051234,GO:0055114,GO:0098796,GO:1902494 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000003408 265.0
PJD3_k127_5980866_7 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000007967 259.0
PJD3_k127_5980866_8 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000001031 212.0
PJD3_k127_5980866_9 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000001213 198.0
PJD3_k127_5981789_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 558.0
PJD3_k127_5981789_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000004824 192.0
PJD3_k127_5981789_2 Cyclase dehydrase - - - 0.000000000000000000000000000000000000000002313 160.0
PJD3_k127_5981789_3 Domain of unknown function (DUF4124) - - - 0.00000000003085 74.0
PJD3_k127_5981789_4 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000004782 69.0
PJD3_k127_5986391_0 Succinyl-CoA ligase like flavodoxin domain K09181 - - 3.009e-262 826.0
PJD3_k127_5986391_1 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003452 434.0
PJD3_k127_5986391_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 389.0
PJD3_k127_5995012_0 ISFtu1 transposase K01152 - - - 0.00000000000000000000000000000000003999 146.0
PJD3_k127_5995012_1 Transposase - - - 0.00003453 51.0
PJD3_k127_5995012_2 cAMP biosynthetic process K03765,K07277,K07316,K21008 - 2.1.1.72 0.0004918 50.0
PJD3_k127_6016601_0 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 330.0
PJD3_k127_6016601_1 Sulfocyanin (SoxE) domain - - - 0.000001909 56.0
PJD3_k127_6019734_0 Amidohydrolase family K01464 - 3.5.2.2 1.252e-229 719.0
PJD3_k127_6019734_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.536e-199 629.0
PJD3_k127_6019734_2 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 542.0
PJD3_k127_6019734_3 Asp Glu hydantoin racemase K01799 - 5.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006369 383.0
PJD3_k127_6019734_4 Belongs to the carbamate kinase family K00926 - 2.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004182 270.0
PJD3_k127_6019734_5 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007272 250.0
PJD3_k127_6019734_6 FCD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001724 250.0
PJD3_k127_6019734_7 Nicotinamide mononucleotide transporter K03811 - - 0.0000000000000000000000000000000000000000000000000000000000000001892 226.0
PJD3_k127_6019734_8 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000000000000000007771 207.0
PJD3_k127_6019734_9 FecR protein - - - 0.0000000000000000000004581 108.0
PJD3_k127_6021683_0 PHB de-polymerase C-terminus K05973 - 3.1.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 577.0
PJD3_k127_6021683_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 537.0
PJD3_k127_6023188_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1009.0
PJD3_k127_6023188_1 Auxin Efflux Carrier K07088 - - 0.000003879 54.0
PJD3_k127_6023946_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003624 564.0
PJD3_k127_6023946_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 572.0
PJD3_k127_6023946_10 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.00000000000000000000000000000000000000000000001683 174.0
PJD3_k127_6023946_11 Phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.0000000000000000000000000000000000000000001415 164.0
PJD3_k127_6023946_12 ABC transporter K01990 - - 0.0000000000000000000000000000001313 126.0
PJD3_k127_6023946_13 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000002486 113.0
PJD3_k127_6023946_14 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000000000000000002374 101.0
PJD3_k127_6023946_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 416.0
PJD3_k127_6023946_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 439.0
PJD3_k127_6023946_4 Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5- (5- phosphoribosylamino)methylideneamino imidazole-4-carboxamide K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 408.0
PJD3_k127_6023946_5 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005188 364.0
PJD3_k127_6023946_6 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 329.0
PJD3_k127_6023946_7 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 325.0
PJD3_k127_6023946_8 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 304.0
PJD3_k127_6023946_9 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 GO:0000105,GO:0003674,GO:0003824,GO:0004635,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.4.19 0.000000000000000000000000000000000000000000000000000000001732 203.0
PJD3_k127_6026453_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 1.468e-313 976.0
PJD3_k127_6026962_0 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 585.0
PJD3_k127_6026962_1 Alpha/beta hydrolase family K01561 - 3.8.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 406.0
PJD3_k127_6026962_2 Pyridoxal-phosphate dependent enzyme K05396,K17950 - 4.4.1.15,4.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000122 361.0
PJD3_k127_6026962_3 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000165 101.0
PJD3_k127_6026962_4 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.000000000000000004176 92.0
PJD3_k127_6026962_5 ABC transporter, transmembrane region K06147 - - 0.000000000000202 70.0
PJD3_k127_6028164_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1013.0
PJD3_k127_6028164_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 376.0
PJD3_k127_6028164_2 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 327.0
PJD3_k127_6028164_3 Endonuclease Exonuclease phosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 309.0
PJD3_k127_6028164_4 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008755 278.0
PJD3_k127_6028164_5 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000006259 224.0
PJD3_k127_6028164_6 PFAM NUDIX hydrolase K08310 - 3.6.1.67 0.0000000000000000000000000000000000000000000000000000000000881 211.0
PJD3_k127_6028164_7 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000002395 193.0
PJD3_k127_6028164_8 Transcriptional regulator K03710 - - 0.0000000000000000000000000000000000000000000000000006358 189.0
PJD3_k127_6028164_9 Regulatory protein, FmdB family - - - 0.000000000000000000000000321 111.0
PJD3_k127_6029525_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 2.552e-201 635.0
PJD3_k127_6029525_1 Mg chelatase subunit ChlI K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008978 529.0
PJD3_k127_6029525_2 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000464 112.0
PJD3_k127_6033161_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 3.651e-275 863.0
PJD3_k127_6033722_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 539.0
PJD3_k127_6033722_1 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 479.0
PJD3_k127_6033722_2 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002346 274.0
PJD3_k127_6033722_3 Sigma-70 region 2 K03088 - - 0.000000000000000000000005591 109.0
PJD3_k127_6033722_4 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000007099 93.0
PJD3_k127_604506_0 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009178 472.0
PJD3_k127_604506_1 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006019 273.0
PJD3_k127_604506_2 Belongs to the ABC transporter superfamily K02032 - - 0.000000000000000000000000000000000000000000000000000000000007702 212.0
PJD3_k127_6059809_0 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 462.0
PJD3_k127_6059809_1 LysR family K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 436.0
PJD3_k127_6059809_2 Transglycosylase SLT domain K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004635 329.0
PJD3_k127_6059809_3 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.000000000000000000000000000000000000000000000000000001058 201.0
PJD3_k127_6059809_4 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.000000000000000000000000000000002014 134.0
PJD3_k127_6060856_0 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 5.148e-235 752.0
PJD3_k127_6060856_1 PFAM cyclase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009043 504.0
PJD3_k127_6060856_2 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 424.0
PJD3_k127_6060856_3 ATP-binding cassette (ABC) transporters are multidomain membrane proteins, responsible for the controlled efflux and influx of substances (allocrites) across cellular membranes. ATP-binding protein is for coupling the energy of ATP hydrolysis to conformational changes in the transmembrane domains K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203 318.0
PJD3_k127_6060856_4 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000004407 80.0
PJD3_k127_6063508_0 ABC-type dipeptide transport system, periplasmic component K02035 - - 1.745e-231 727.0
PJD3_k127_6063508_1 general secretion pathway protein D K02453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005892 622.0
PJD3_k127_6063508_10 General secretion pathway protein I K02458 - - 0.00000000000000000000000000000000000006091 146.0
PJD3_k127_6063508_11 General secretion pathway K02462 - - 0.0000000000000000000000000005689 124.0
PJD3_k127_6063508_12 4-alpha-glucanotransferase K00705,K06044 - 2.4.1.25,5.4.99.15 0.00000000000000000000009737 100.0
PJD3_k127_6063508_13 Prokaryotic N-terminal methylation motif K02459 - - 0.000000000000000005966 95.0
PJD3_k127_6063508_14 general secretion pathway protein K02452 - - 0.000000000006341 76.0
PJD3_k127_6063508_15 Type II transport protein GspH - - - 0.000007631 54.0
PJD3_k127_6063508_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 487.0
PJD3_k127_6063508_3 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 454.0
PJD3_k127_6063508_4 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 434.0
PJD3_k127_6063508_5 General secretion pathway protein L K02461 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000149 282.0
PJD3_k127_6063508_6 general secretion pathway protein G K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000000729 228.0
PJD3_k127_6063508_7 General Secretory Pathway K02463 - - 0.0000000000000000000000000000000000000000000000000000002522 203.0
PJD3_k127_6063508_8 Type II secretion system protein K K02460 - - 0.00000000000000000000000000000000000000000000000003146 191.0
PJD3_k127_6063508_9 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000003961 171.0
PJD3_k127_6070275_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002128 385.0
PJD3_k127_6070275_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000001549 199.0
PJD3_k127_6070275_2 Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.00001049 50.0
PJD3_k127_6071164_0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 426.0
PJD3_k127_6071164_1 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.0000000000000000000000000000000000000000000000000000000000008035 216.0
PJD3_k127_6071164_2 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000006868 51.0
PJD3_k127_607311_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004993 342.0
PJD3_k127_607311_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000003629 237.0
PJD3_k127_607311_2 Bacterial transcriptional activator domain - - - 0.0002091 52.0
PJD3_k127_6074485_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 7.08e-316 977.0
PJD3_k127_6074485_1 (GMC) oxidoreductase K00108 - 1.1.99.1 1.547e-233 733.0
PJD3_k127_6074485_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.547e-230 723.0
PJD3_k127_6074485_3 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.495e-210 673.0
PJD3_k127_6074485_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 408.0
PJD3_k127_6074485_5 Bacterial transcriptional regulator K20539 - - 0.000000000000000000000000000000000000000000000009647 182.0
PJD3_k127_6074485_6 Belongs to the PdxA family K00097 - 1.1.1.262 0.0000000001142 68.0
PJD3_k127_6079156_0 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 7.411e-227 722.0
PJD3_k127_6079156_1 PFAM Hydantoinase B oxoprolinase K01474 - 3.5.2.14 2.065e-219 711.0
PJD3_k127_6079156_2 AMP-binding enzyme C-terminal domain K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 562.0
PJD3_k127_6079156_3 Carbohydrate transport and metabolism K21395 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 512.0
PJD3_k127_6079156_4 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 449.0
PJD3_k127_6079156_5 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004658 264.0
PJD3_k127_6079156_6 PFAM Tripartite ATP-independent periplasmic transporter, DctQ component - - - 0.00000000000000000000000000000000000000000000003142 176.0
PJD3_k127_6079156_7 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.0000000000005379 83.0
PJD3_k127_6088571_0 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 539.0
PJD3_k127_6088571_1 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000277 502.0
PJD3_k127_6088571_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 494.0
PJD3_k127_6088571_3 PFAM Mandelate racemase muconate lactonizing K01856,K02549 - 4.2.1.113,5.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000328 473.0
PJD3_k127_6088571_4 extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 330.0
PJD3_k127_6088571_5 Belongs to the ABC transporter superfamily K10823 - - 0.00000000000000000000000000000003097 130.0
PJD3_k127_6098487_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1023.0
PJD3_k127_6098487_1 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 5.54e-256 792.0
PJD3_k127_6098487_10 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001989 265.0
PJD3_k127_6098487_11 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000009881 249.0
PJD3_k127_6098487_12 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000002014 214.0
PJD3_k127_6098487_13 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000000000000162 170.0
PJD3_k127_6098487_14 biopolymer transport K03559 - - 0.00000000000000000000000000000000000007568 151.0
PJD3_k127_6098487_15 Cold shock protein K03704 - - 0.00000000000000000000000000000001802 127.0
PJD3_k127_6098487_16 Belongs to the UPF0434 family K09791 - - 0.000000000000000000000468 97.0
PJD3_k127_6098487_17 PAP2 superfamily - - - 0.000001602 51.0
PJD3_k127_6098487_2 Domain of unknown function (DUF1705) K03760 - 2.7.8.43 5.04e-230 731.0
PJD3_k127_6098487_3 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007389 397.0
PJD3_k127_6098487_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 393.0
PJD3_k127_6098487_5 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 370.0
PJD3_k127_6098487_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 339.0
PJD3_k127_6098487_7 Two component transcriptional regulator, winged helix family K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 327.0
PJD3_k127_6098487_8 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 315.0
PJD3_k127_6098487_9 MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001538 284.0
PJD3_k127_6098847_0 protease with the C-terminal PDZ domain - - - 5.749e-213 680.0
PJD3_k127_6098847_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006538 591.0
PJD3_k127_6098847_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008618 532.0
PJD3_k127_6098847_3 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 350.0
PJD3_k127_6098847_4 Peptidase C26 K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005709 329.0
PJD3_k127_6098847_5 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006322 272.0
PJD3_k127_6098847_6 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005045 271.0
PJD3_k127_6098847_7 Calcineurin-like phosphoesterase superfamily domain K03651 - 3.1.4.53 0.000000000000000000000000000000000000000000000000000000000202 213.0
PJD3_k127_6108753_0 benzoyl-CoA oxygenase K15512 - 1.14.13.208 4.227e-292 900.0
PJD3_k127_6108753_1 Pfam Enoyl-CoA hydratase isomerase K15513 - 4.1.2.44 5.984e-238 739.0
PJD3_k127_6108753_2 Oxidoreductase NAD-binding domain K00528,K02641,K15511 - 1.14.13.208,1.18.1.2,1.19.1.1 2.624e-230 724.0
PJD3_k127_6108753_3 Protein conserved in bacteria K22129 - 2.7.1.219,2.7.1.220 0.0000000000000000000000000000000001341 141.0
PJD3_k127_6110502_0 Dimerisation domain K09846 - 2.1.1.210 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005254 454.0
PJD3_k127_6110502_1 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 328.0
PJD3_k127_6110502_2 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000321 286.0
PJD3_k127_6110502_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000009573 237.0
PJD3_k127_6110502_4 Flavodoxin domain K00230 GO:0000166,GO:0003674,GO:0003824,GO:0004729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0010181,GO:0016491,GO:0016627,GO:0016634,GO:0016635,GO:0018130,GO:0019438,GO:0032553,GO:0033013,GO:0033014,GO:0034641,GO:0036094,GO:0042168,GO:0042440,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070818,GO:0070819,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.5.3 0.000000000000000000000000000000000000000000000000000000000001525 214.0
PJD3_k127_6110502_5 - - - - 0.000000000000000000693 96.0
PJD3_k127_6110502_6 Transcriptional regulator - - - 0.00000000001141 65.0
PJD3_k127_6110502_7 helix_turn_helix, Lux Regulon - - - 0.0000000817 54.0
PJD3_k127_6110502_8 - - - - 0.00002869 54.0
PJD3_k127_6121602_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 6.101e-308 966.0
PJD3_k127_6121602_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 556.0
PJD3_k127_6121602_10 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000001047 138.0
PJD3_k127_6121602_11 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000000000000000001144 118.0
PJD3_k127_6121602_12 GYD domain - - - 0.00000000000000000006789 96.0
PJD3_k127_6121602_13 phosphorelay signal transduction system - - - 0.0000000000002392 83.0
PJD3_k127_6121602_14 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.0000001555 64.0
PJD3_k127_6121602_16 - - - - 0.000001808 57.0
PJD3_k127_6121602_17 Protein of unknown function (DUF2917) - - - 0.0001623 49.0
PJD3_k127_6121602_18 deoxyhypusine monooxygenase activity - - - 0.0002452 53.0
PJD3_k127_6121602_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008687 507.0
PJD3_k127_6121602_3 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003955 482.0
PJD3_k127_6121602_4 PA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009356 433.0
PJD3_k127_6121602_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005738 267.0
PJD3_k127_6121602_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000000000000000000000000000000003129 195.0
PJD3_k127_6121602_8 PFAM regulatory protein MerR - - - 0.000000000000000000000000000000000000000000000002721 177.0
PJD3_k127_6121602_9 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000004346 176.0
PJD3_k127_6137283_0 Binding-protein-dependent transport system inner membrane component K02011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 444.0
PJD3_k127_6137283_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 428.0
PJD3_k127_6137283_2 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000011 281.0
PJD3_k127_6137283_3 Protein of unknown function (DUF1631) - - - 0.000000002481 65.0
PJD3_k127_6138845_0 type IV pilus secretin PilQ K02666 - - 4.576e-288 902.0
PJD3_k127_6138845_1 penicillin-binding protein 1A K05366 - 2.4.1.129,3.4.16.4 8.334e-281 883.0
PJD3_k127_6138845_2 assembly protein K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 457.0
PJD3_k127_6138845_3 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000007482 240.0
PJD3_k127_6138845_4 Fimbrial assembly protein (PilN) K02663 - - 0.000000000000000000000000000000000000000000000002173 184.0
PJD3_k127_6138845_5 Pilus assembly protein K02665 - - 0.00000000000000000000000000000000000000006458 157.0
PJD3_k127_6138845_6 Belongs to the frataxin family K06202 - - 0.0000000000000000000002368 98.0
PJD3_k127_6138854_0 DNA photolyase K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001039 261.0
PJD3_k127_6138854_1 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000006602 244.0
PJD3_k127_6138854_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000001178 143.0
PJD3_k127_6138854_3 uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000006911 67.0
PJD3_k127_6144836_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 1.245e-205 647.0
PJD3_k127_6144836_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 613.0
PJD3_k127_6144836_2 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003665 461.0
PJD3_k127_6144836_3 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 445.0
PJD3_k127_6144836_4 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 408.0
PJD3_k127_6144836_5 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 367.0
PJD3_k127_6144836_6 Phosphoribosyl transferase domain K07101 - - 0.000000000000000000000000000000000000000000000000000000000001344 213.0
PJD3_k127_6144836_7 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000002655 147.0
PJD3_k127_6144836_8 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000000000000000000005814 142.0
PJD3_k127_6144836_9 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.0000000002936 66.0
PJD3_k127_6170294_0 FMN-dependent dehydrogenase K00101 - 1.1.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 515.0
PJD3_k127_6170294_1 PFAM transglutaminase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005157 404.0
PJD3_k127_6170294_2 Trypsin-like peptidase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 384.0
PJD3_k127_6170294_3 Trypsin-like serine protease K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000001679 250.0
PJD3_k127_6170294_4 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000003574 142.0
PJD3_k127_6173594_0 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 385.0
PJD3_k127_6173594_1 alpha/beta hydrolase fold K01066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000105 241.0
PJD3_k127_6173594_2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K06034 - 4.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000003639 228.0
PJD3_k127_6173594_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001628 235.0
PJD3_k127_6173594_4 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000001198 147.0
PJD3_k127_6178546_0 transport systems, ATPase components K02056 - 3.6.3.17 2.318e-243 779.0
PJD3_k127_6178546_1 COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B K13482 - 1.17.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000989 581.0
PJD3_k127_6178546_2 COG0402 Cytosine deaminase and related metal-dependent hydrolases K01487 - 3.5.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 551.0
PJD3_k127_6178546_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 536.0
PJD3_k127_6178546_4 Pfam:DUF989 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002858 505.0
PJD3_k127_6178546_5 Basic membrane lipoprotein K02058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 507.0
PJD3_k127_6178546_6 Oxidative deamination of D-amino acids K00285 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0008718,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009324,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016638,GO:0019478,GO:0019480,GO:0019752,GO:0032991,GO:0042851,GO:0042853,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055114,GO:0055130,GO:0071704,GO:0071944,GO:0098796,GO:0098797,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902494,GO:1990204 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 470.0
PJD3_k127_6178546_7 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 451.0
PJD3_k127_6178546_8 XdhC Rossmann domain K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002458 272.0
PJD3_k127_6200645_0 Dehydrogenase E1 component K00164 - 1.2.4.2 0.0 1512.0
PJD3_k127_6200645_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 2.851e-282 872.0
PJD3_k127_6200645_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 5.515e-233 726.0
PJD3_k127_6200645_3 SdhA B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC D which are the membrane components and form cytochrome b556 K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 454.0
PJD3_k127_6200645_4 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000001768 93.0
PJD3_k127_6206494_0 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 439.0
PJD3_k127_6206494_1 short-chain dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003875 372.0
PJD3_k127_6214693_0 PFAM Ig domain protein, group 1 domain protein K20276 - - 0.000000000000000000000000000000000000000000000000000000000000643 233.0
PJD3_k127_6214693_1 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000001749 212.0
PJD3_k127_6214693_2 Bacterial Ig-like domain (group 1) - - - 0.0000000000000000000000002772 111.0
PJD3_k127_6218253_0 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 569.0
PJD3_k127_6218253_1 flagellar motor switch protein K02410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 438.0
PJD3_k127_6218253_2 Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 - - 0.00000000000000000000000000000000000000000000000000000000000000000987 240.0
PJD3_k127_6218253_3 flagellar protein FliS K02422 - - 0.00000000000000000000000000001216 124.0
PJD3_k127_6218253_4 Flagellar protein export ATPase FliI K02412 - 3.6.3.14 0.000000000000000000003798 100.0
PJD3_k127_6218253_5 regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed K21087 GO:0000166,GO:0001539,GO:0003674,GO:0005488,GO:0006928,GO:0008144,GO:0008150,GO:0009987,GO:0017076,GO:0019001,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0035438,GO:0036094,GO:0040011,GO:0040012,GO:0043167,GO:0043168,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051674,GO:0065007,GO:0071945,GO:0071973,GO:0097159,GO:0097367,GO:0097588,GO:1901265,GO:1901363,GO:1902021,GO:2000145 - 0.00000000000000000001278 101.0
PJD3_k127_6218253_6 Flagellar hook-basal body complex protein FliE K02408 - - 0.000000000000000001046 91.0
PJD3_k127_6218253_7 Flagellar assembly protein FliH K02411 - - 0.0000000000000001645 88.0
PJD3_k127_6218253_8 Flagellar protein FliT K02423 - - 0.0002654 51.0
PJD3_k127_6230421_0 Putative diguanylate phosphodiesterase K13243 - 3.1.4.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006314 427.0
PJD3_k127_6230421_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 400.0
PJD3_k127_6230421_2 NlpB/DapX lipoprotein K07287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006491 384.0
PJD3_k127_6230421_3 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005903 286.0
PJD3_k127_6230421_4 tellurite resistance protein - - - 0.00000000000000000000000000000000000000000000000001413 188.0
PJD3_k127_6230421_5 - - - - 0.0000000000001885 78.0
PJD3_k127_6230421_6 - - - - 0.00002906 52.0
PJD3_k127_6232443_0 PFAM AMP-dependent synthetase and ligase - - - 3.345e-206 650.0
PJD3_k127_6232443_1 2-dehydropantoate 2-reductase K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 469.0
PJD3_k127_6232443_2 membrane transporter protein K07090 - - 0.000000000000000006154 89.0
PJD3_k127_6250538_0 PFAM Cytochrome c oxidase, subunit I K02274 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 481.0
PJD3_k127_6250538_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 296.0
PJD3_k127_6250538_2 PFAM electron transport protein SCO1 SenC K07152 - - 0.000000000000000000000000000000000000000000000000000000000000000169 230.0
PJD3_k127_6250538_3 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000007529 159.0
PJD3_k127_6282495_0 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 528.0
PJD3_k127_6282495_1 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 534.0
PJD3_k127_6282495_2 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 406.0
PJD3_k127_6282495_3 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361 334.0
PJD3_k127_6282495_4 Deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 308.0
PJD3_k127_6282495_5 HAD-superfamily hydrolase, subfamily IB (PSPase-like) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003188 279.0
PJD3_k127_6282495_6 Belongs to the DnaA family K10763 - - 0.000000000000000000000000000000000000000000000000000000000000002801 225.0
PJD3_k127_6282495_7 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000002149 179.0
PJD3_k127_6286936_0 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 488.0
PJD3_k127_6286936_1 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 401.0
PJD3_k127_6286936_2 Alcohol dehydrogenase GroES-like domain K00098 - 1.1.1.264 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008288 386.0
PJD3_k127_6286936_3 Belongs to the mandelate racemase muconate lactonizing enzyme family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 351.0
PJD3_k127_6286936_4 FCD K22293 - - 0.0000000000000000000000000000000000000000000000000000002494 216.0
PJD3_k127_6286936_5 Tripartite ATP-independent periplasmic transporter - - - 0.00000000000000000000000000000000000000000000000000134 190.0
PJD3_k127_6312883_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 7.161e-252 785.0
PJD3_k127_6312883_1 Carbohydrate phosphorylase K00688 - 2.4.1.1 1.031e-195 620.0
PJD3_k127_6312883_10 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - - - 0.00000000000000000000000000000000000000000000006302 176.0
PJD3_k127_6312883_2 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000231 593.0
PJD3_k127_6312883_3 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000671 516.0
PJD3_k127_6312883_4 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 458.0
PJD3_k127_6312883_5 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004848 419.0
PJD3_k127_6312883_6 Chlorophyllase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 338.0
PJD3_k127_6312883_7 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000006783 216.0
PJD3_k127_6312883_8 Flavodoxin - - - 0.00000000000000000000000000000000000000000000000000002224 194.0
PJD3_k127_6312883_9 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000002322 182.0
PJD3_k127_632280_0 ABC-type dipeptide transport system periplasmic component K02035 - - 2.159e-250 782.0
PJD3_k127_632280_1 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000216 451.0
PJD3_k127_632280_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000001029 169.0
PJD3_k127_6357409_0 thiamine-containing compound biosynthetic process K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 295.0
PJD3_k127_6357409_1 Lipoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004603 263.0
PJD3_k127_6357409_2 phosphogluconate dehydrogenase (decarboxylating) activity K00020 - 1.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000005203 244.0
PJD3_k127_636045_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1027.0
PJD3_k127_6376893_0 N-methylhydantoinase B acetone carboxylase alpha subunit - - - 2.042e-218 687.0
PJD3_k127_6376893_1 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005131 512.0
PJD3_k127_6376925_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1040.0
PJD3_k127_6376925_1 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003641 607.0
PJD3_k127_6376925_2 Type II/IV secretion system protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004697 571.0
PJD3_k127_6376925_3 Belongs to the methyltransferase superfamily K07444 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 379.0
PJD3_k127_6376925_4 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002927 296.0
PJD3_k127_6376925_5 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000003447 209.0
PJD3_k127_6376925_6 membrane K08973 - - 0.000000000000000000000000000000000000000000000000000003132 204.0
PJD3_k127_6376925_7 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000001321 124.0
PJD3_k127_6377902_0 GMC oxidoreductase - - - 1.057e-218 698.0
PJD3_k127_6377902_1 PGAP1-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000104 235.0
PJD3_k127_6377902_2 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000003915 205.0
PJD3_k127_6377902_3 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000000000001702 185.0
PJD3_k127_6377902_4 - - - - 0.0000000000000000000000000000000000000000000000003118 184.0
PJD3_k127_6377902_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000000000003841 153.0
PJD3_k127_6377902_6 - - - - 0.0000000000000000000000000000005631 138.0
PJD3_k127_6377902_7 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000001137 123.0
PJD3_k127_6377902_8 Male sterility protein - - - 0.0000000003234 61.0
PJD3_k127_6377902_9 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.00005135 49.0
PJD3_k127_6397224_0 CO dehydrogenase flavoprotein C-terminal domain K13481 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 592.0
PJD3_k127_6397224_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K13482 - 1.17.1.4 0.000000000000000000000000000000000000000000000107 182.0
PJD3_k127_6397224_2 FCD - - - 0.000000000000000000000000000000000000000006121 164.0
PJD3_k127_6397224_3 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.0000000000376 64.0
PJD3_k127_6428854_0 methionine synthase K00548 - 2.1.1.13 2.716e-241 754.0
PJD3_k127_6428854_1 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 477.0
PJD3_k127_6428854_2 fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 353.0
PJD3_k127_6428854_3 AMP-dependent synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 293.0
PJD3_k127_6428854_4 -Thioesterase K01075 - 3.1.2.23 0.00000000000000000000000000001288 123.0
PJD3_k127_6447487_0 type II and III secretion system protein K02453,K12282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 361.0
PJD3_k127_6447487_1 Type II secretion system (T2SS), protein M K12280 - - 0.00000000000000000000000000000006543 134.0
PJD3_k127_6447487_2 Pilus assembly protein K12279 - - 0.00000000000000000000000003041 121.0
PJD3_k127_6447487_3 Prokaryotic N-terminal methylation motif K10924 - - 0.0000000000000000000000002291 113.0
PJD3_k127_6447487_4 PFAM Fimbrial assembly family protein - - - 0.000000000005652 76.0
PJD3_k127_6447487_5 ompA family - - - 0.000001457 59.0
PJD3_k127_6451175_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 7.97e-252 789.0
PJD3_k127_6451175_1 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009313 549.0
PJD3_k127_6451175_2 Belongs to the DapA family K01714,K13876 - 4.2.1.43,4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003681 500.0
PJD3_k127_6451175_3 fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009537 444.0
PJD3_k127_6451175_4 ABC transporter K02028,K09972 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 301.0
PJD3_k127_6451175_5 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000000000000007343 171.0
PJD3_k127_6455009_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 429.0
PJD3_k127_6455009_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000003988 213.0
PJD3_k127_6455009_2 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000000000000000000000000000000000000006512 178.0
PJD3_k127_6455009_3 Methyltransferase domain - - - 0.00000001557 57.0
PJD3_k127_6455009_4 Predicted membrane protein (DUF2069) - - - 0.00002177 48.0
PJD3_k127_6482467_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1598.0
PJD3_k127_6482467_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K00836,K07250 - 2.6.1.19,2.6.1.22,2.6.1.76 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002524 426.0
PJD3_k127_6495831_0 Na+/Pi-cotransporter K03324 - - 9.522e-226 713.0
PJD3_k127_6495831_1 PFAM extracellular solute-binding protein family 1 K05813 - - 1.142e-216 681.0
PJD3_k127_6495831_2 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000003852 198.0
PJD3_k127_649849_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 623.0
PJD3_k127_649849_1 Aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 397.0
PJD3_k127_653291_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007227 478.0
PJD3_k127_653291_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 437.0
PJD3_k127_653291_2 ROK family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009021 372.0
PJD3_k127_653291_3 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000903 378.0
PJD3_k127_653291_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000001133 249.0
PJD3_k127_653291_5 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000000000000000000000000000000000000000000000000000000000001481 248.0
PJD3_k127_653291_6 Putative heavy-metal chelation - - - 0.0000000000000000000000000000000000000000000000000004969 188.0
PJD3_k127_653291_7 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000002021 178.0
PJD3_k127_653291_8 Ribosomal protein S21 K02970 - - 0.00000000000000000000000000000001254 129.0
PJD3_k127_685388_0 COG1180 Pyruvate-formate lyase-activating enzyme K20449 - 1.3.7.1 1.466e-221 709.0
PJD3_k127_685388_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 1.302e-194 620.0
PJD3_k127_685388_2 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K09740 - - 0.000000000000000000000000000000000000000000000000009776 191.0
PJD3_k127_694375_0 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 357.0
PJD3_k127_694375_1 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000008324 199.0
PJD3_k127_694375_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000002814 137.0
PJD3_k127_733534_0 Molecular chaperone. Has ATPase activity K04079 - - 3.469e-283 910.0
PJD3_k127_733534_1 VWA containing CoxE family protein K09989 - - 1.108e-206 650.0
PJD3_k127_733534_2 Transcriptional regulator with HTH domain and aminotransferase domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 574.0
PJD3_k127_733534_3 AAA domain (Cdc48 subfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005629 372.0
PJD3_k127_733534_4 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004434 302.0
PJD3_k127_733534_5 Spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000001823 243.0
PJD3_k127_733534_6 glycosylase K03649 - 3.2.2.28 0.000000000000000000000000000000000000000000000001634 179.0
PJD3_k127_733534_7 LysE type translocator - - - 0.000000000000000000000000000000000005576 144.0
PJD3_k127_733534_8 Phenazine biosynthesis-like protein K06998 - 5.3.3.17 0.00000000000006231 74.0
PJD3_k127_738680_0 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K04090 - 1.2.7.8 5.164e-221 691.0
PJD3_k127_738680_1 FAD binding domain K00480,K22270 - 1.14.13.1,1.14.13.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 490.0
PJD3_k127_738680_2 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 453.0
PJD3_k127_738680_3 Belongs to the DapA family K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 404.0
PJD3_k127_738680_4 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 391.0
PJD3_k127_738680_5 Glutathione S-transferase, C-terminal domain K11209 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 339.0
PJD3_k127_738680_6 Predicted metal-dependent hydrolase K07044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 326.0
PJD3_k127_738680_7 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004307 284.0
PJD3_k127_738680_8 2-hydroxychromene-2-carboxylate isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002349 271.0
PJD3_k127_738680_9 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000004117 195.0
PJD3_k127_748715_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003583 390.0
PJD3_k127_748715_1 ABC-2 type transporter K09694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006988 311.0
PJD3_k127_748715_2 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002849 284.0
PJD3_k127_748715_3 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000839 265.0
PJD3_k127_748715_4 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000000000000000000000000009488 217.0
PJD3_k127_748715_5 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000003307 166.0
PJD3_k127_753887_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 5.123e-318 980.0
PJD3_k127_760293_0 Domain of Unknown Function (DUF748) - - - 1.193e-284 923.0
PJD3_k127_760293_1 Virulence factor BrkB K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 504.0
PJD3_k127_760293_2 Protein of unknown function (DUF2868) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 351.0
PJD3_k127_760293_3 Domain of unknown function (DUF3482) - - - 0.00000000000000000000000000000000000000000000000000002668 192.0
PJD3_k127_760293_4 - - - - 0.0000000000000000000000000000000000000000006015 162.0
PJD3_k127_760293_5 ADP-heptose-lipopolysaccharide heptosyltransferase activity - - - 0.00000000000000000000000000001009 131.0
PJD3_k127_760921_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 8.326e-252 794.0
PJD3_k127_760921_1 transport system, fused permease components - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 546.0
PJD3_k127_760921_2 transport system periplasmic component K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006411 462.0
PJD3_k127_760921_3 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007609 467.0
PJD3_k127_760921_4 alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 455.0
PJD3_k127_760921_5 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000000000009602 274.0
PJD3_k127_760921_6 Nuclease (SNase domain protein) - - - 0.00000000000000000000000000009708 123.0
PJD3_k127_766322_0 benzoyl-CoA reductase K04113 - 1.3.7.8 5.047e-205 665.0
PJD3_k127_766322_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 5.755e-205 653.0
PJD3_k127_766322_10 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000001311 61.0
PJD3_k127_766322_2 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 601.0
PJD3_k127_766322_3 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002863 597.0
PJD3_k127_766322_4 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 568.0
PJD3_k127_766322_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 512.0
PJD3_k127_766322_6 Benzoyl-CoA reductase subunit K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005236 376.0
PJD3_k127_766322_7 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001383 316.0
PJD3_k127_766322_8 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000005221 217.0
PJD3_k127_766322_9 ferredoxin - - - 0.000000000000000000000000000000000001988 139.0
PJD3_k127_774212_0 Thiamine pyrophosphate enzyme, central domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008551 492.0
PJD3_k127_774212_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 291.0
PJD3_k127_774212_2 Transcriptional regulator - - - 0.00000000000000000000000000000000000000056 151.0
PJD3_k127_775934_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 521.0
PJD3_k127_775934_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 411.0
PJD3_k127_78379_0 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.493e-256 816.0
PJD3_k127_78379_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 4.625e-232 731.0
PJD3_k127_78379_2 BFD domain protein 2Fe-2S -binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 384.0
PJD3_k127_78379_3 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 344.0
PJD3_k127_78379_4 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 323.0
PJD3_k127_78379_5 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000006622 212.0
PJD3_k127_78379_6 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000003138 98.0
PJD3_k127_78379_7 - - - - 0.0000002256 63.0
PJD3_k127_805633_0 Competence protein K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002928 569.0
PJD3_k127_805633_1 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 456.0
PJD3_k127_805633_2 KR domain K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001859 385.0
PJD3_k127_805633_3 PFAM TatD-related deoxyribonuclease K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008524 318.0
PJD3_k127_805633_4 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002599 289.0
PJD3_k127_805633_5 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000001113 173.0
PJD3_k127_805633_6 ABC-type Fe3 transport system, periplasmic component K02012 - - 0.000000000000000000000000000000000007049 138.0
PJD3_k127_805633_7 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000114 85.0
PJD3_k127_805633_8 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.000000002 63.0
PJD3_k127_805633_9 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000602 57.0
PJD3_k127_808206_0 Methylmalonyl-CoA mutase K01848 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 5.4.99.2 7.953e-243 770.0
PJD3_k127_808206_1 COG2513 PEP phosphonomutase and related enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004329 276.0
PJD3_k127_808206_2 periplasmic protein kinase ArgK and related GTPases of G3E family K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000135 276.0
PJD3_k127_808206_3 B12 binding domain K01849 GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016853,GO:0016866,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0036094,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046906,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:1901135,GO:1901360,GO:1901363,GO:1901564 5.4.99.2 0.000000000000000000000000000000000000000000000004348 186.0
PJD3_k127_808206_4 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000002052 163.0
PJD3_k127_81104_0 phosphoserine phosphatase K01079 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 291.0
PJD3_k127_81104_1 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000971 270.0
PJD3_k127_81104_2 Uncharacterised MFS-type transporter YbfB - - - 0.00000000000000000000000000000000000000000000000000000000000002033 231.0
PJD3_k127_81104_3 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.00000000000000000000000000000000000000000000000000000000001342 210.0
PJD3_k127_815152_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K00249,K00294,K13821 - 1.2.1.88,1.3.8.7,1.5.5.2 0.0 1609.0
PJD3_k127_815152_1 formate dehydrogenase, alpha subunit K00123,K22015 - 1.17.1.9,1.17.99.7 0.0 1558.0
PJD3_k127_815152_10 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K15546 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 434.0
PJD3_k127_815152_11 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 410.0
PJD3_k127_815152_12 Tripartite tricarboxylate transporter family receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003397 388.0
PJD3_k127_815152_13 Zinc-binding dehydrogenase K00001,K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 355.0
PJD3_k127_815152_14 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 324.0
PJD3_k127_815152_15 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000292 248.0
PJD3_k127_815152_16 formate dehydrogenase K00122 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000001394 243.0
PJD3_k127_815152_17 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002881 245.0
PJD3_k127_815152_18 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000002353 239.0
PJD3_k127_815152_19 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000001235 218.0
PJD3_k127_815152_2 Sodium/hydrogen exchanger family K03455,K11745,K11747 - - 1.979e-288 896.0
PJD3_k127_815152_20 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000004207 200.0
PJD3_k127_815152_21 KR domain K00046 - 1.1.1.69 0.000000000000000000000000000000002115 147.0
PJD3_k127_815152_22 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000006167 110.0
PJD3_k127_815152_23 Tripartite tricarboxylate transporter TctB family - - - 0.00000000005579 69.0
PJD3_k127_815152_24 - - - - 0.000007459 53.0
PJD3_k127_815152_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K15509 - 1.1.1.308 5.536e-238 742.0
PJD3_k127_815152_4 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.482e-215 675.0
PJD3_k127_815152_5 Tripartite tricarboxylate transporter TctA family K07793 - - 4.093e-213 672.0
PJD3_k127_815152_6 PFAM Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00122 - 1.17.1.9 9.107e-195 634.0
PJD3_k127_815152_7 Cupin domain K00450 - 1.13.11.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008349 586.0
PJD3_k127_815152_8 Bacterial extracellular solute-binding protein, family 7 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003896 574.0
PJD3_k127_815152_9 Enoyl-CoA hydratase K15513 - 4.1.2.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 438.0
PJD3_k127_81581_0 Bacterial protein of unknown function (DUF853) K06915 - - 9.398e-218 692.0
PJD3_k127_81581_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 6.97e-210 659.0
PJD3_k127_81581_10 Helix-turn-helix domain, rpiR family - - - 0.0000000000000000000000000000000000000000000000000000000001357 218.0
PJD3_k127_81581_11 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000296 173.0
PJD3_k127_81581_2 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 527.0
PJD3_k127_81581_3 Bacterial extracellular solute-binding protein, family 7 K21395 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005201 479.0
PJD3_k127_81581_4 Pyridoxal-phosphate dependent enzyme K01751 - 4.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005766 473.0
PJD3_k127_81581_5 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 371.0
PJD3_k127_81581_6 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009518 358.0
PJD3_k127_81581_7 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01459 - 3.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 343.0
PJD3_k127_81581_8 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 339.0
PJD3_k127_81581_9 of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009291 287.0
PJD3_k127_828721_0 Belongs to the UPF0061 (SELO) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008927 599.0
PJD3_k127_828721_1 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 287.0
PJD3_k127_828721_2 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006821 289.0
PJD3_k127_828721_3 PFAM AMP-dependent synthetase and ligase K20034 - 6.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000002079 234.0
PJD3_k127_828721_4 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000017 229.0
PJD3_k127_828721_5 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.000000000000000000000000000000000000000000000000000000000001832 213.0
PJD3_k127_828721_6 COG2010 Cytochrome c, mono- and diheme variants - - - 0.000000000000000000000000000000000005705 141.0
PJD3_k127_828721_7 Belongs to the BolA IbaG family K05527 - - 0.00000000000000000000000001038 115.0
PJD3_k127_828721_8 - - - - 0.00000000134 60.0
PJD3_k127_83383_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 574.0
PJD3_k127_83383_1 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 411.0
PJD3_k127_83383_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 381.0
PJD3_k127_83383_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 335.0
PJD3_k127_83383_4 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008787 329.0
PJD3_k127_83383_5 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000000000000000000000000000006915 235.0
PJD3_k127_83383_6 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.0000000000000000000000000000000000000234 153.0
PJD3_k127_83383_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000000001148 135.0
PJD3_k127_83383_8 Domain of unknown function (DUF4845) - - - 0.000000000000000007528 91.0
PJD3_k127_843352_0 Sigma-54 interaction domain K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000762 529.0
PJD3_k127_843352_1 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000001069 235.0
PJD3_k127_843352_2 N-acetylmuramoyl-L-alanine amidase K01447 - 3.5.1.28 0.0000000000000000000000000000000001511 151.0
PJD3_k127_844237_0 Acyl CoA acetate 3-ketoacid CoA transferase beta subunit K01029 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000914 369.0
PJD3_k127_844237_1 Coenzyme A transferase K01028,K01034 - 2.8.3.5,2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000001277 255.0
PJD3_k127_844237_2 Protein of unknown function (DUF3422) - - - 0.000000000000000000000000000000000000000000000000000000000000000000006914 245.0
PJD3_k127_844237_3 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000622 172.0
PJD3_k127_887698_0 PFAM aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0 1018.0
PJD3_k127_887698_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 7.905e-297 926.0
PJD3_k127_887698_10 ABC 3 transport family K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002912 284.0
PJD3_k127_887698_11 ABC transporter, periplasmic molybdate-binding protein K02020 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015098,GO:0015103,GO:0015318,GO:0015399,GO:0015405,GO:0015412,GO:0015689,GO:0015698,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030151,GO:0030288,GO:0030313,GO:0030973,GO:0031975,GO:0034220,GO:0042597,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043169,GO:0043225,GO:0043492,GO:0044464,GO:0046872,GO:0046914,GO:0051179,GO:0051234,GO:0055085,GO:0098656,GO:0099133,GO:1901359 - 0.000000000000000000000000000000000000000000000000000000000698 211.0
PJD3_k127_887698_12 ATPases associated with a variety of cellular activities K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000001597 204.0
PJD3_k127_887698_13 Bacterial regulatory helix-turn-helix protein, lysR family K02019 - - 0.000000000000000000000000003608 115.0
PJD3_k127_887698_14 PIN domain - - - 0.000000000000000000001523 100.0
PJD3_k127_887698_15 Protein of unknown function (DUF3460) - - - 0.0000000000001318 72.0
PJD3_k127_887698_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003885 585.0
PJD3_k127_887698_3 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006357 556.0
PJD3_k127_887698_4 Aminotransferase K14287 - 2.6.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 415.0
PJD3_k127_887698_5 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 386.0
PJD3_k127_887698_6 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 356.0
PJD3_k127_887698_7 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003857 340.0
PJD3_k127_887698_8 4Fe-4S dicluster domain K05796 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007118 320.0
PJD3_k127_887698_9 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 316.0
PJD3_k127_891812_0 L-carnitine dehydratase bile acid-inducible protein F - - - 3.234e-199 632.0
PJD3_k127_891812_1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 597.0
PJD3_k127_891812_2 PFAM aminotransferase class V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 454.0
PJD3_k127_891812_3 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009276 377.0
PJD3_k127_891812_4 COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000001619 217.0
PJD3_k127_891812_5 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000004528 132.0
PJD3_k127_891812_6 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000005376 74.0
PJD3_k127_906578_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 1.3e-309 959.0
PJD3_k127_906578_1 4Fe-4S dicluster domain - - - 2.296e-203 655.0
PJD3_k127_906578_2 Chaperone protein TorD - - - 0.000000000000000000000000000000000000000009441 162.0
PJD3_k127_906578_3 - - - - 0.0002456 48.0
PJD3_k127_925141_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 7.244e-301 933.0
PJD3_k127_925141_1 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000002073 250.0
PJD3_k127_925141_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000001006 141.0
PJD3_k127_930294_0 COG1840 ABC-type Fe3 transport system, periplasmic component K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 601.0
PJD3_k127_930294_1 Belongs to the ABC transporter superfamily K02052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 541.0
PJD3_k127_930294_2 Binding-protein-dependent transport system inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 451.0
PJD3_k127_930294_3 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003087 439.0
PJD3_k127_930294_4 Binding-protein-dependent transport system inner membrane component K02053 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008483 363.0
PJD3_k127_930294_5 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000006081 243.0
PJD3_k127_930294_6 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000003628 198.0
PJD3_k127_94195_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003496 479.0
PJD3_k127_94195_1 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.0000000000000000000000000000000103 131.0
PJD3_k127_94195_2 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.00000000001609 75.0
PJD3_k127_946652_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1264.0
PJD3_k127_946652_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.063e-230 719.0
PJD3_k127_946652_10 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 358.0
PJD3_k127_946652_11 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009492 352.0
PJD3_k127_946652_12 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003093 352.0
PJD3_k127_946652_13 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 301.0
PJD3_k127_946652_14 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002047 278.0
PJD3_k127_946652_15 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000004691 266.0
PJD3_k127_946652_16 phytoene K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000004738 244.0
PJD3_k127_946652_17 Protein of unknown function (DUF1178) - - - 0.0000000000000000000000000000000000000000000005243 172.0
PJD3_k127_946652_18 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000000005755 155.0
PJD3_k127_946652_19 ABC transporter K06158 - - 0.0000000000000000000000000000007466 128.0
PJD3_k127_946652_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 3.907e-220 689.0
PJD3_k127_946652_20 - - - - 0.000000000000006477 77.0
PJD3_k127_946652_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 7.337e-210 678.0
PJD3_k127_946652_4 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 554.0
PJD3_k127_946652_5 Aminoglycoside phosphotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005579 527.0
PJD3_k127_946652_6 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004149 507.0
PJD3_k127_946652_7 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 453.0
PJD3_k127_946652_8 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 395.0
PJD3_k127_946652_9 Phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004072 373.0
PJD3_k127_973578_0 PFAM phenylacetic acid catabolic family protein K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008867 565.0
PJD3_k127_973578_1 phenylacetic acid K02611 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 319.0
PJD3_k127_973578_2 Phenylacetic acid degradation K02610 - - 0.0000000000000000000000000000000000000000000002976 172.0
PJD3_k127_973578_3 Iron-sulfur cluster assembly protein K02612 - - 0.00000000000000000000000000000004058 141.0
PJD3_k127_973578_5 - - - - 0.00004487 45.0
PJD3_k127_973874_0 reductase, alpha subunit K00394 - 1.8.99.2 9.018e-236 730.0
PJD3_k127_973874_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 6.138e-223 713.0
PJD3_k127_973874_10 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 GO:0003674,GO:0003824,GO:0004462,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006089,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016151,GO:0016829,GO:0016846,GO:0019243,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042182,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046185,GO:0046872,GO:0046914,GO:0051186,GO:0051596,GO:0061727,GO:0071704,GO:1901564,GO:1901575,GO:1901615 4.4.1.5 0.0000000000000000000000000000000000000000000000000000000000000002673 221.0
PJD3_k127_973874_11 - - - - 0.0000000000000000000000000000000000000000000025 168.0
PJD3_k127_973874_12 - - - - 0.0000000000000000542 81.0
PJD3_k127_973874_2 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 546.0
PJD3_k127_973874_3 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007674 427.0
PJD3_k127_973874_4 Mg2 and Co2 transporter K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 381.0
PJD3_k127_973874_5 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 289.0
PJD3_k127_973874_6 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000005977 253.0
PJD3_k127_973874_7 Metal-dependent hydrolase K07043 - - 0.000000000000000000000000000000000000000000000000000000000000000000001145 248.0
PJD3_k127_973874_8 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000002963 240.0
PJD3_k127_973874_9 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.0000000000000000000000000000000000000000000000000000000000000001304 226.0
PJD3_k127_985192_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 470.0
PJD3_k127_985192_1 Putative amidoligase enzyme (DUF2126) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003011 449.0
PJD3_k127_985192_2 N-carbamoyl-D-amino acid hydrolase K01459 - 3.5.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000002727 254.0
PJD3_k127_985192_3 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001362 249.0
PJD3_k127_985192_4 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002227 237.0
PJD3_k127_985192_5 Gametolysin peptidase M11 - - - 0.000000000000000000000000000006512 138.0
PJD3_k127_985192_6 Esterase PHB depolymerase - - - 0.000000000000006451 89.0
PJD3_k127_985192_7 Cytochrome c - - - 0.00000000001578 70.0
PJD3_k127_987368_0 Glycolate oxidase, iron-sulfur subunit K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 463.0
PJD3_k127_987368_1 FAD binding domain K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005724 409.0
PJD3_k127_987368_2 FAD FMN-containing dehydrogenases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 316.0
PJD3_k127_990339_0 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004776 604.0
PJD3_k127_990339_1 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009898 599.0
PJD3_k127_990339_2 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002876 499.0
PJD3_k127_990339_3 PFAM Aminotransferase class I and II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003805 484.0
PJD3_k127_990339_4 enoyl-CoA hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 385.0
PJD3_k127_990339_5 COG3090 TRAP-type C4-dicarboxylate transport system small permease component - - - 0.000000000000000000000000000000000000000007811 160.0
PJD3_k127_990339_6 PFAM Lytic transglycosylase catalytic - - - 0.0002274 44.0
PJD3_k127_991433_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 7.792e-207 653.0
PJD3_k127_991433_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008301 374.0
PJD3_k127_991433_2 Zinc-binding dehydrogenase K19745 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005207 327.0
PJD3_k127_991433_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 320.0
PJD3_k127_991433_4 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 310.0
PJD3_k127_991433_5 Metal dependent phosphohydrolases with conserved 'HD' motif. K21196 - 1.13.11.78 0.00000000000000000000000000000000000000000000000000000000000001998 223.0
PJD3_k127_991433_6 - - - - 0.000000000000000000000000000000000000002239 149.0
PJD3_k127_991433_7 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.0000000000000000000000000000000002353 135.0
PJD3_k127_991433_8 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K02114 - - 0.000000000000000000000002551 106.0
PJD3_k127_999478_0 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 496.0
PJD3_k127_999478_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 473.0
PJD3_k127_999478_2 Belongs to the precorrin methyltransferase family K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000000000000000000000000000000002465 178.0
PJD3_k127_999478_3 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000003058 106.0
PJD3_k127_999478_4 Iron-sulphur cluster biosynthesis K13628 - - 0.0000000000002035 83.0