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Overview

ID MAG02932
Name PJD3_bin.21
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Woeseiales
Family Woeseiaceae
Genus UBA1847
Species UBA1847 sp041574375
Assembly information
Completeness (%) 79.4
Contamination (%) 0.89
GC content (%) 57.0
N50 (bp) 17,281
Genome size (bp) 2,993,350

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2754

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_1018355_0 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 - 2.3.3.9 1.327e-298 932.0
PJD3_k127_1018355_1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates K01637 - 4.1.3.1 1.658e-295 912.0
PJD3_k127_1018355_2 transcriptional - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 580.0
PJD3_k127_1018355_3 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 410.0
PJD3_k127_1018355_4 Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system K02017 - 3.6.3.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 330.0
PJD3_k127_1018355_5 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 289.0
PJD3_k127_1018355_6 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001574 256.0
PJD3_k127_1018355_7 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000000000000000006818 218.0
PJD3_k127_1018355_8 ABC transporter, periplasmic molybdate-binding protein K02020 GO:0003674,GO:0005488,GO:0030973,GO:0043167,GO:0043168 - 0.0000000000000000000000000000000000000000000000000000001028 203.0
PJD3_k127_1018355_9 Putative phosphatase (DUF442) K17218 - 1.8.5.4 0.0000000000000009384 81.0
PJD3_k127_1042064_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 564.0
PJD3_k127_1042064_1 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 527.0
PJD3_k127_1042064_10 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0008152,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0016491,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0042802,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0055114,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001057 291.0
PJD3_k127_1042064_11 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533,K15396 - 2.1.1.200 0.00000000000000000000000000000000000000000000000000000000000000000000000000003871 265.0
PJD3_k127_1042064_12 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000004765 243.0
PJD3_k127_1042064_13 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000003544 237.0
PJD3_k127_1042064_14 Is able to transfer iron-sulfur clusters to apo- ferredoxin. Multiple cycles of 2Fe2S cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system K13628 - - 0.0000000000000000000000000000000000000000002283 161.0
PJD3_k127_1042064_15 TIGRFAM type IV pilus biogenesis stability protein PilW K02656 - - 0.000000000000000000000000000000000000003031 156.0
PJD3_k127_1042064_16 Preprotein translocase subunit K03210 - - 0.000000000000000000000000005588 113.0
PJD3_k127_1042064_17 protein conserved in bacteria - - - 0.000000000000000000000203 106.0
PJD3_k127_1042064_18 PDZ domain - - - 0.000000000000000000005824 105.0
PJD3_k127_1042064_19 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000008351 100.0
PJD3_k127_1042064_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000477 522.0
PJD3_k127_1042064_3 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 516.0
PJD3_k127_1042064_4 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005397 437.0
PJD3_k127_1042064_5 Transfers a succinyl group from succinyl-CoA to L- serine, forming succinyl-L-serine K00641 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004414,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008374,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009086,GO:0009092,GO:0009987,GO:0016053,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 408.0
PJD3_k127_1042064_6 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 GO:0001522,GO:0003674,GO:0003824,GO:0004123,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009000,GO:0009058,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016226,GO:0016740,GO:0016769,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0018130,GO:0018131,GO:0019842,GO:0022607,GO:0030170,GO:0031071,GO:0031119,GO:0031163,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046484,GO:0048037,GO:0050662,GO:0051186,GO:0070279,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097163,GO:0140104,GO:1901360,GO:1901363 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003538 400.0
PJD3_k127_1042064_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 395.0
PJD3_k127_1042064_8 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 304.0
PJD3_k127_1042064_9 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 302.0
PJD3_k127_1045275_0 belongs to the aldehyde dehydrogenase family K00154,K22445 - 1.2.1.68,1.2.99.10 2.719e-225 705.0
PJD3_k127_1045275_1 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 609.0
PJD3_k127_1045275_10 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K22185 - 1.1.1.175 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 350.0
PJD3_k127_1045275_11 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001162 272.0
PJD3_k127_1045275_12 PFAM Acetoacetate decarboxylase (ADC) - - - 0.0000000000000000000000000000000000000000000000000006015 188.0
PJD3_k127_1045275_13 COG2030 Acyl dehydratase - - - 0.000000000000000000000000000000000000000000000000005746 184.0
PJD3_k127_1045275_14 PHB accumulation regulatory domain - - - 0.00000000000000000000000000000000000000000000000005452 183.0
PJD3_k127_1045275_15 survival protein SurE K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000006078 178.0
PJD3_k127_1045275_16 transcription regulator containing HTH domain K18831 - - 0.000000000000000000000000000000000000000002826 157.0
PJD3_k127_1045275_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 593.0
PJD3_k127_1045275_3 COG2211 Na melibiose symporter and related transporters K03292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 576.0
PJD3_k127_1045275_4 AMP-binding enzyme C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009893 519.0
PJD3_k127_1045275_5 Protein of unknown function (DUF1298) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001314 494.0
PJD3_k127_1045275_6 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006849 449.0
PJD3_k127_1045275_7 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 402.0
PJD3_k127_1045275_8 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 394.0
PJD3_k127_1045275_9 Bacterial regulatory proteins, tetR family K19047 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 374.0
PJD3_k127_105299_0 Heat shock 70 kDa protein K04043 - - 7.552e-318 983.0
PJD3_k127_105299_1 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 527.0
PJD3_k127_105299_10 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.000000000000000000005627 96.0
PJD3_k127_105299_11 Belongs to the UPF0125 (RnfH) family K09801 - - 0.00000000000000001384 87.0
PJD3_k127_105299_13 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00009527 48.0
PJD3_k127_105299_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0006457,GO:0008150,GO:0009987 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 508.0
PJD3_k127_105299_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 495.0
PJD3_k127_105299_4 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 385.0
PJD3_k127_105299_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000004911 244.0
PJD3_k127_105299_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000000000000000000000000000000000000000001797 224.0
PJD3_k127_105299_7 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000006127 207.0
PJD3_k127_105299_8 Cyclase dehydrase - - - 0.000000000000000000000000000000000000000002583 159.0
PJD3_k127_105299_9 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000003005 158.0
PJD3_k127_1058227_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 5.599e-311 963.0
PJD3_k127_1058227_1 Phospholipase D. Active site motifs. K06132 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 569.0
PJD3_k127_1058227_2 Acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006152 375.0
PJD3_k127_1058227_3 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009099 264.0
PJD3_k127_1058227_4 Patatin-like phospholipase K07001 - - 0.0000000000000000000000000000000000000000000000000000000006104 221.0
PJD3_k127_1094507_0 COG0471 Di- and tricarboxylate transporters K14445 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 540.0
PJD3_k127_1094507_1 Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs K15257 GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016740,GO:0016741,GO:0016765,GO:0022607,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009463 318.0
PJD3_k127_1094507_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005485 271.0
PJD3_k127_1094507_3 Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) K15256 GO:0002097,GO:0002098,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000000000000000003204 255.0
PJD3_k127_1094507_4 Bacterial regulatory protein, arsR family - - - 0.0000000000000000000000000000000000000000000000000000000000003154 216.0
PJD3_k127_1094507_5 D-alanyl-D-alanine carboxypeptidase K07260 - 3.4.17.14 0.00000000000000000000000000000000000000000000000001583 185.0
PJD3_k127_1094507_6 Belongs to the bacterial solute-binding protein 9 family K15727 - - 0.0000000000105 74.0
PJD3_k127_1094507_7 - - - - 0.000000001681 59.0
PJD3_k127_1095722_0 TonB-dependent receptor plug - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 537.0
PJD3_k127_1095722_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004285 407.0
PJD3_k127_1095722_10 acyl-phosphate glycerol-3-phosphate acyltransferase activity K08591 - 2.3.1.15 0.00000000000000000000000000006646 125.0
PJD3_k127_1095722_11 acyl-phosphate glycerol-3-phosphate acyltransferase activity K08591 - 2.3.1.15 0.00000000000000000000000000008288 129.0
PJD3_k127_1095722_12 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000001873 111.0
PJD3_k127_1095722_13 TonB-dependent Receptor Plug Domain - - - 0.00000000000000233 77.0
PJD3_k127_1095722_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 401.0
PJD3_k127_1095722_3 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 386.0
PJD3_k127_1095722_4 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 311.0
PJD3_k127_1095722_5 Pyruvate phosphate dikinase, PEP pyruvate binding domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 311.0
PJD3_k127_1095722_6 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000005908 239.0
PJD3_k127_1095722_7 lipocalin K03098 GO:0005575,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0033554,GO:0044462,GO:0044464,GO:0050896,GO:0051716,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000008269 223.0
PJD3_k127_1095722_8 HupE / UreJ protein K03192 - - 0.00000000000000000000000000000000000000000000001935 177.0
PJD3_k127_1095722_9 regulator - - - 0.00000000000000000000000000000000000000000000004042 181.0
PJD3_k127_1100354_0 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001529 287.0
PJD3_k127_1100354_1 Thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000888 282.0
PJD3_k127_1100354_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000008332 219.0
PJD3_k127_1100354_3 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000006275 176.0
PJD3_k127_1100354_4 (FHA) domain - - - 0.000000000000003832 88.0
PJD3_k127_1100354_5 SMART AAA ATPase - - - 0.00000000000001192 87.0
PJD3_k127_1100354_6 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000001318 72.0
PJD3_k127_1100354_7 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000729 44.0
PJD3_k127_113811_0 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007979 481.0
PJD3_k127_113811_1 Peptidase C39 family K06021,K13409,K20344 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 320.0
PJD3_k127_113811_2 HlyD family secretion protein K13408 - - 0.00000000000000000000000000000000000000000000004343 186.0
PJD3_k127_1194505_0 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0042254,GO:0042255,GO:0042623,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0065003,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:1901360 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 541.0
PJD3_k127_1194505_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 498.0
PJD3_k127_1194505_2 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 394.0
PJD3_k127_1194505_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009604 327.0
PJD3_k127_1194505_4 Methyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000002859 215.0
PJD3_k127_1194505_5 cAMP biosynthetic process - - - 0.00000000000000000000001069 104.0
PJD3_k127_1194505_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000004073 79.0
PJD3_k127_1194505_7 Adenylate cyclase - - - 0.000004706 51.0
PJD3_k127_1251879_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 2.666e-258 805.0
PJD3_k127_1251879_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 496.0
PJD3_k127_1251879_2 TIGRFAM Tyrosine recombinase XerD K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 385.0
PJD3_k127_1251879_3 Reduces the stability of FtsZ polymers in the presence of ATP K06916 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032153,GO:0044424,GO:0044464,GO:0051301 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 350.0
PJD3_k127_1251879_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004783 310.0
PJD3_k127_1251879_5 Nudix hydrolase - - - 0.000000000000000000000000000000000000000000000000000000002982 205.0
PJD3_k127_1251879_6 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000003891 197.0
PJD3_k127_1251879_7 Phosphate acyltransferases - - - 0.00000000000000000000000000000000000000002689 161.0
PJD3_k127_1251879_8 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000001153 143.0
PJD3_k127_1315096_0 Domain of unknown function (DUF305) - - - 0.0 1118.0
PJD3_k127_1315096_1 TGS domain K06944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007712 426.0
PJD3_k127_1315096_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 409.0
PJD3_k127_1315096_3 aminotransferase class V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003724 324.0
PJD3_k127_1315096_4 Fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001477 262.0
PJD3_k127_1315096_5 enoyl-CoA hydratase K01692 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000002082 202.0
PJD3_k127_1315096_6 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000001168 200.0
PJD3_k127_1315096_7 cellulase activity - - - 0.00000000000000000000000000000000000000000000000003685 196.0
PJD3_k127_1315096_8 - - - - 0.0000000000000000000000000000000000000000000000009093 183.0
PJD3_k127_1321518_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002644 386.0
PJD3_k127_1321518_1 COG3202 ATP ADP translocase K03301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007325 384.0
PJD3_k127_1321518_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002765 293.0
PJD3_k127_1321518_3 Sterol-sensing domain of SREBP cleavage-activation K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000008353 260.0
PJD3_k127_1321518_4 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000000000000000000000006455 193.0
PJD3_k127_1321518_5 peroxiredoxin activity - - - 0.0000000000000000000000000000000005634 141.0
PJD3_k127_1321518_6 Lrp/AsnC ligand binding domain - - - 0.000000000000000000000000003224 119.0
PJD3_k127_1321518_7 Cytochrome B561 K12262 - - 0.00000000000000000000000008682 116.0
PJD3_k127_1321961_0 Domain of unknown function (DUF4445) - - - 6.755e-256 805.0
PJD3_k127_1321961_1 trimethylamine methyltransferase K14083 - 2.1.1.250 9.047e-209 660.0
PJD3_k127_1321961_10 Trimethylamine methyltransferase (MTTB) - - - 0.000004199 50.0
PJD3_k127_1321961_2 COG1410 Methionine synthase I, cobalamin-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 447.0
PJD3_k127_1321961_3 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006502 349.0
PJD3_k127_1321961_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 349.0
PJD3_k127_1321961_5 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000175 274.0
PJD3_k127_1321961_6 Protein of unknown function (DUF1638) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001389 245.0
PJD3_k127_1321961_7 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000003458 141.0
PJD3_k127_1321961_8 Virulence factor - - - 0.000000000000000003133 88.0
PJD3_k127_1321961_9 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000002581 82.0
PJD3_k127_1330032_0 COG1051 ADP-ribose pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000006181 234.0
PJD3_k127_1330032_1 Domain of unknown function (DUF1508) - - - 0.000000000000000000000000000000000001315 141.0
PJD3_k127_1330032_2 Peptidase family M49 K01277 - 3.4.14.4 0.000000000000000000000000000006095 120.0
PJD3_k127_1335332_0 choline-sulfatase - - - 3.929e-252 787.0
PJD3_k127_1335332_1 Glycosyl hydrolase family 3 C-terminal domain K05349 - 3.2.1.21 6.853e-242 769.0
PJD3_k127_1335332_10 Sulfatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006843 369.0
PJD3_k127_1335332_11 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K07689,K07690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007622 248.0
PJD3_k127_1335332_12 converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.00000000000000000000000000000000000000004221 175.0
PJD3_k127_1335332_13 PFAM ATP-binding region ATPase domain protein, histidine kinase HAMP region domain protein, histidine kinase A domain protein - - - 0.00000000000000000001515 95.0
PJD3_k127_1335332_2 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 1.274e-233 732.0
PJD3_k127_1335332_3 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 7.99e-197 644.0
PJD3_k127_1335332_4 Sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 619.0
PJD3_k127_1335332_5 choline-sulfatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 503.0
PJD3_k127_1335332_6 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009638 452.0
PJD3_k127_1335332_7 COG3119 Arylsulfatase A and related enzymes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 452.0
PJD3_k127_1335332_8 arylsulfatase activity K01136 - 3.1.6.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 435.0
PJD3_k127_1335332_9 Glycosyl hydrolase family 10 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 430.0
PJD3_k127_1341890_0 TIGRFAM NADH-quinone oxidoreductase, chain G K00336 - 1.6.5.3 5.561e-228 725.0
PJD3_k127_1341890_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 6.594e-200 630.0
PJD3_k127_1341890_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 481.0
PJD3_k127_1341890_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004533 449.0
PJD3_k127_1341890_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000001409 242.0
PJD3_k127_1341890_5 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000002229 218.0
PJD3_k127_135272_0 TonB dependent receptor K02014 - - 1.382e-226 736.0
PJD3_k127_135272_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000008715 92.0
PJD3_k127_1361405_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1251.0
PJD3_k127_1361405_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 6.932e-211 685.0
PJD3_k127_1361405_10 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000009347 228.0
PJD3_k127_1361405_11 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.0000000000000000000000000000000000000000000000000000002606 200.0
PJD3_k127_1361405_12 Low molecular weight phosphotyrosine protein phosphatase K01104 - 3.1.3.48 0.000000000000000000000000000000000000000000000000000001201 195.0
PJD3_k127_1361405_13 Maf-like protein - - - 0.000000000000000000000000000000000000000000000002993 179.0
PJD3_k127_1361405_14 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000000000000003476 140.0
PJD3_k127_1361405_15 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000005213 87.0
PJD3_k127_1361405_16 ACR protein K07040 - - 0.00002268 54.0
PJD3_k127_1361405_2 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454 - - 1.059e-209 662.0
PJD3_k127_1361405_3 General secretion pathway protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 436.0
PJD3_k127_1361405_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 409.0
PJD3_k127_1361405_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008332 373.0
PJD3_k127_1361405_6 ErfK YbiS YcfS YnhG K16291 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 323.0
PJD3_k127_1361405_7 Responsible for synthesis of pseudouridine from uracil K06179 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 314.0
PJD3_k127_1361405_8 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 303.0
PJD3_k127_1361405_9 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006778 282.0
PJD3_k127_1369198_0 Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed K00632 GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 2.3.1.16 6.204e-197 619.0
PJD3_k127_1369198_1 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K01782,K01825 GO:0003674,GO:0003824,GO:0003857,GO:0004165,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008692,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016856,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 571.0
PJD3_k127_1369198_2 COG0530 Ca2 Na antiporter K07301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002909 284.0
PJD3_k127_1369198_3 phosphatidylethanolamine metabolic process K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001233 280.0
PJD3_k127_1369198_4 Cro/C1-type HTH DNA-binding domain K07727 - - 0.00000000000000000000005336 100.0
PJD3_k127_1369198_5 peptidase S58 DmpA K01266 - 3.4.11.19 0.00000000000000000000007326 100.0
PJD3_k127_1369198_6 - - - - 0.0000107 55.0
PJD3_k127_1370127_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1832.0
PJD3_k127_1370127_1 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1294.0
PJD3_k127_1370127_10 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002627 542.0
PJD3_k127_1370127_11 PFAM Type II secretion system protein E - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 520.0
PJD3_k127_1370127_12 Part of a membrane complex involved in electron transport K03615 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533 475.0
PJD3_k127_1370127_13 PFAM Type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 438.0
PJD3_k127_1370127_14 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002944 411.0
PJD3_k127_1370127_15 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 381.0
PJD3_k127_1370127_16 protein conserved in bacteria K09930 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 373.0
PJD3_k127_1370127_17 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 374.0
PJD3_k127_1370127_18 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 379.0
PJD3_k127_1370127_19 Belongs to the DapA family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008477 351.0
PJD3_k127_1370127_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.772e-295 919.0
PJD3_k127_1370127_20 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 341.0
PJD3_k127_1370127_21 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007265 312.0
PJD3_k127_1370127_22 Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis K03683 GO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0031123,GO:0034470,GO:0034641,GO:0034660,GO:0042780,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003582 301.0
PJD3_k127_1370127_23 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005624 282.0
PJD3_k127_1370127_24 Part of a membrane complex involved in electron transport K03617 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000139 258.0
PJD3_k127_1370127_25 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000008132 222.0
PJD3_k127_1370127_26 protein conserved in bacteria K09929 - - 0.0000000000000000000000000000000000000000000000000000000000002291 220.0
PJD3_k127_1370127_27 Part of a membrane complex involved in electron transport K03613 - - 0.0000000000000000000000000000000000000000000000000000000001371 208.0
PJD3_k127_1370127_28 DoxX K15977 - - 0.000000000000000000000000000000000000000000000000000000001432 207.0
PJD3_k127_1370127_29 Part of a membrane complex involved in electron transport K03616 - - 0.000000000000000000000000000000000000000000000000000001883 195.0
PJD3_k127_1370127_3 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 8.56e-279 865.0
PJD3_k127_1370127_30 Part of a membrane complex involved in electron transport K03612 - - 0.0000000000000000000000000000000000000000000003275 174.0
PJD3_k127_1370127_31 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.0000000000000000000000000000000000000000002092 160.0
PJD3_k127_1370127_32 Putative heavy-metal-binding - - - 0.000000000000000000000000000000000000000001189 158.0
PJD3_k127_1370127_33 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000001049 157.0
PJD3_k127_1370127_34 Peptidase family M48 - - - 0.00000000000000000000000000000000000000006786 162.0
PJD3_k127_1370127_35 Cold shock K03704 - - 0.000000000000000000000000000000000005098 136.0
PJD3_k127_1370127_36 SnoaL-like domain - - - 0.000000000000000000000000000000002014 134.0
PJD3_k127_1370127_37 Putative heavy-metal-binding - - - 0.000000000000000000000000000005052 126.0
PJD3_k127_1370127_38 bacterial OsmY and nodulation domain K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.0000004409 57.0
PJD3_k127_1370127_4 glutamate synthase K12527 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0055114 1.97.1.9 8.564e-233 752.0
PJD3_k127_1370127_5 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667 - 4.1.99.1 3.05e-232 724.0
PJD3_k127_1370127_6 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 6.407e-223 704.0
PJD3_k127_1370127_7 Protein tyrosine kinase - - - 2.016e-214 693.0
PJD3_k127_1370127_8 Diguanylate cyclase - - - 6.63e-200 653.0
PJD3_k127_1370127_9 amino acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 605.0
PJD3_k127_1371457_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 593.0
PJD3_k127_1371457_1 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 589.0
PJD3_k127_1371457_10 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000006054 230.0
PJD3_k127_1371457_11 Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate K03270 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008781,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016311,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016791,GO:0019143,GO:0033692,GO:0034637,GO:0034645,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0070567,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 3.1.3.45 0.000000000000000000000000000000000000000000004354 168.0
PJD3_k127_1371457_12 Stringent starvation protein B K03600 GO:0000502,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008150,GO:0009376,GO:0009893,GO:0009894,GO:0009896,GO:0010604,GO:0019222,GO:0019899,GO:0031597,GO:0032781,GO:0032991,GO:0042176,GO:0042802,GO:0042803,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044093,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045732,GO:0046983,GO:0048518,GO:0050789,GO:0050790,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0097159,GO:1901363,GO:1902494,GO:1904949,GO:1905368,GO:1905369,GO:1990904 - 0.000000000000000000000000000000000004461 141.0
PJD3_k127_1371457_13 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000002222 109.0
PJD3_k127_1371457_14 Belongs to the BolA IbaG family - - - 0.00000000000000000001824 93.0
PJD3_k127_1371457_15 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA K11719 - - 0.0000005358 58.0
PJD3_k127_1371457_16 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.0000008224 59.0
PJD3_k127_1371457_2 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002959 408.0
PJD3_k127_1371457_3 COG1137 ABC-type (unclassified) transport system, ATPase component K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004789 348.0
PJD3_k127_1371457_4 antiporter K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 308.0
PJD3_k127_1371457_5 PFAM LppC K07121 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 318.0
PJD3_k127_1371457_6 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005843 277.0
PJD3_k127_1371457_7 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04691,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0033554,GO:0035966,GO:0035967,GO:0042221,GO:0042597,GO:0042802,GO:0043170,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0051788,GO:0070011,GO:0070887,GO:0071218,GO:0071310,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007361 282.0
PJD3_k127_1371457_8 PFAM Glutathione S-transferase K03599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001744 264.0
PJD3_k127_1371457_9 Cytochrome C1 family K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009811 251.0
PJD3_k127_1415566_0 Prokaryotic glutathione synthetase, ATP-grasp domain K03802 - 6.3.2.29,6.3.2.30 0.0 1244.0
PJD3_k127_1415566_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 2.253e-302 942.0
PJD3_k127_1415566_10 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 426.0
PJD3_k127_1415566_11 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 419.0
PJD3_k127_1415566_12 glutamine synthetase K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008108 408.0
PJD3_k127_1415566_13 PFAM ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 376.0
PJD3_k127_1415566_14 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 GO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.5.4.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 351.0
PJD3_k127_1415566_15 Belongs to the peptidase S51 family K13282 - 3.4.15.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003329 345.0
PJD3_k127_1415566_16 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 315.0
PJD3_k127_1415566_17 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 330.0
PJD3_k127_1415566_18 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 299.0
PJD3_k127_1415566_19 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016651,GO:0016657,GO:0018130,GO:0019438,GO:0033739,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007237 276.0
PJD3_k127_1415566_2 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 9.283e-255 793.0
PJD3_k127_1415566_20 HlyD family secretion protein K01993 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006886 252.0
PJD3_k127_1415566_21 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000007924 244.0
PJD3_k127_1415566_22 COG1392 Phosphate transport regulator (distant homolog of PhoU) K07220 - - 0.00000000000000000000000000000000000000000000000000000000000000000007792 238.0
PJD3_k127_1415566_23 EVE domain-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000002223 220.0
PJD3_k127_1415566_24 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000001922 222.0
PJD3_k127_1415566_25 universal stress protein K14055 - - 0.0000000000000000000000000000000000000000000000000000000002358 215.0
PJD3_k127_1415566_26 Peptidase C26 K07010 - - 0.00000000000000000000000000000000000000000000000000000000212 209.0
PJD3_k127_1415566_27 helix_turn_helix isocitrate lyase regulation - - - 0.0000000000000000000000000000000000000000000000001528 186.0
PJD3_k127_1415566_28 tetR family - - - 0.0000000000000000000000000000000000000319 151.0
PJD3_k127_1415566_29 Transcriptional regulator - - - 0.0000000000000000000000000002248 124.0
PJD3_k127_1415566_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K12256 - 2.6.1.113 2.335e-197 624.0
PJD3_k127_1415566_30 cheY-homologous receiver domain - - - 0.00000000000000000000008111 115.0
PJD3_k127_1415566_31 IG-like fold at C-terminal of FixG, putative oxidoreductase - - - 0.0000000000000000000001643 100.0
PJD3_k127_1415566_32 glutaminyl-tRNA synthetase K01886 - 6.1.1.18 0.0000000000000000000758 90.0
PJD3_k127_1415566_33 Prokaryotic dksA/traR C4-type zinc finger - - - 0.0000000000000000004419 91.0
PJD3_k127_1415566_34 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000000000005665 83.0
PJD3_k127_1415566_35 regulation of RNA biosynthetic process K03655 - 3.6.4.12 0.000000000004853 74.0
PJD3_k127_1415566_36 - - - - 0.00000000001618 68.0
PJD3_k127_1415566_37 Cbb3-type cytochrome oxidase K00407 - - 0.0000000001157 63.0
PJD3_k127_1415566_38 Protein tyrosine kinase K08884,K11912 - 2.7.11.1 0.00007977 56.0
PJD3_k127_1415566_39 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.0004679 46.0
PJD3_k127_1415566_4 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 618.0
PJD3_k127_1415566_5 Na H antiporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 593.0
PJD3_k127_1415566_6 phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004796 544.0
PJD3_k127_1415566_7 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 491.0
PJD3_k127_1415566_8 Belongs to the arginase family K01479,K01480,K12255,K18459 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0030145,GO:0034641,GO:0042401,GO:0043167,GO:0043169,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11,3.5.3.17,3.5.3.7,3.5.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008735 458.0
PJD3_k127_1415566_9 Mur ligase family, glutamate ligase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 451.0
PJD3_k127_1420193_0 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 7.212e-270 831.0
PJD3_k127_1420193_1 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 409.0
PJD3_k127_1420193_2 COG3000 Sterol desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 376.0
PJD3_k127_1420193_3 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000000005773 214.0
PJD3_k127_1420193_5 - - - - 0.000000000000000000000005489 111.0
PJD3_k127_1434919_0 Protein of unknown function (DUF1249) K09920 - - 0.0000000000000000000000000004691 119.0
PJD3_k127_1434919_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000003094 108.0
PJD3_k127_1443100_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1203.0
PJD3_k127_1443100_1 TonB dependent receptor K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 449.0
PJD3_k127_1443100_10 Metal-dependent hydrolase K07043 - - 0.000000000000000000000000000000000000000000002532 173.0
PJD3_k127_1443100_11 - - - - 0.000000000000000000000000000000000002114 147.0
PJD3_k127_1443100_2 ABC-2 family transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006349 371.0
PJD3_k127_1443100_3 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004587 353.0
PJD3_k127_1443100_4 Zinc-uptake complex component A periplasmic K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 330.0
PJD3_k127_1443100_5 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 313.0
PJD3_k127_1443100_6 ABC-3 protein K02075 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 301.0
PJD3_k127_1443100_7 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007479 294.0
PJD3_k127_1443100_8 phosphate-selective porin O and P - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000181 284.0
PJD3_k127_1443100_9 Preprotein translocase subunit TatD K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000001392 237.0
PJD3_k127_1513290_0 aminopeptidase N - - - 0.000000000000000000000000000000003143 145.0
PJD3_k127_1513290_1 Transposase DDE domain - - - 0.0000000000000000000001867 98.0
PJD3_k127_1524286_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1570.0
PJD3_k127_1524286_1 carbamoyl-phosphate synthetase glutamine chain K01956 GO:0000050,GO:0003674,GO:0003824,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005951,GO:0006082,GO:0006139,GO:0006220,GO:0006221,GO:0006520,GO:0006525,GO:0006526,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019627,GO:0019637,GO:0019693,GO:0019752,GO:0032991,GO:0034641,GO:0034654,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000651 549.0
PJD3_k127_1524286_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 GO:0000027,GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022607,GO:0022613,GO:0022618,GO:0031167,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000001562 252.0
PJD3_k127_1524286_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 GO:0001098,GO:0001108,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0032784,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000003316 211.0
PJD3_k127_1524286_4 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000008672 169.0
PJD3_k127_1524286_5 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000003107 136.0
PJD3_k127_1524286_6 RNA-binding protein K07574 - - 0.00000000000000000000004537 104.0
PJD3_k127_1534659_0 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006709 533.0
PJD3_k127_1534659_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001241 278.0
PJD3_k127_1542161_0 GTP-binding protein TypA K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 453.0
PJD3_k127_1542161_1 Saccharopine dehydrogenase NADP binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007463 279.0
PJD3_k127_1542161_2 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000000000000000007724 212.0
PJD3_k127_159230_0 PFAM tRNA synthetase class II (D K and N) K01893 - 6.1.1.22 1.168e-210 664.0
PJD3_k127_159230_1 Pfam:Arch_ATPase - - - 0.000000000000000000000000000000000000000000000000000000000001169 236.0
PJD3_k127_159230_2 - K06921 - - 0.000000000000000000000000000000000000000000288 179.0
PJD3_k127_159230_3 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000000000004561 109.0
PJD3_k127_159230_4 Adenylate cyclase - - - 0.00000000000000000001933 106.0
PJD3_k127_159230_5 Transcriptional regulatory protein, C terminal - - - 0.00000000001393 78.0
PJD3_k127_159230_6 Peptidase C13 family - - - 0.00000008899 66.0
PJD3_k127_159230_8 O-methyltransferase - - - 0.00003364 46.0
PJD3_k127_1633872_0 TonB-dependent receptor plug - - - 1.463e-212 685.0
PJD3_k127_1633872_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 404.0
PJD3_k127_1633872_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006298 360.0
PJD3_k127_1633872_3 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 311.0
PJD3_k127_1633872_4 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 304.0
PJD3_k127_1633872_5 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000003215 118.0
PJD3_k127_1633872_6 AraC family transcriptional regulator - - - 0.000000000000005373 87.0
PJD3_k127_1672573_0 Peptidase family M1 domain K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 627.0
PJD3_k127_1672573_1 DNA helicase K03654 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000001285 250.0
PJD3_k127_167601_0 endonuclease exonuclease phosphatase K07004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 596.0
PJD3_k127_167601_1 helix_turn_helix multiple antibiotic resistance protein - - - 0.000000001376 63.0
PJD3_k127_1681451_0 protease K08303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 614.0
PJD3_k127_1681451_1 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401 604.0
PJD3_k127_1681451_10 homoserine kinase type II (Protein kinase fold) - - - 0.000000000000000000000000000000000000000000000000000000000000000000007463 262.0
PJD3_k127_1681451_11 MAPEG family - - - 0.0000000000000000000000000000000000000000001392 165.0
PJD3_k127_1681451_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000345 151.0
PJD3_k127_1681451_13 transcriptional regulator - - - 0.00000000564 65.0
PJD3_k127_1681451_14 Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA K01638 - 2.3.3.9 0.00000008931 60.0
PJD3_k127_1681451_2 PFAM FMN-dependent dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 582.0
PJD3_k127_1681451_3 COG0076 Glutamate decarboxylase and related PLP-dependent K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 553.0
PJD3_k127_1681451_4 aspartate--ammonia ligase K01914 GO:0003674,GO:0003824,GO:0004071,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 518.0
PJD3_k127_1681451_5 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004459 512.0
PJD3_k127_1681451_6 Catalyzes the aminotransferase reaction from putrescine to 2-oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. Is also able to transaminate cadaverine and, in lower extent, spermidine, but not ornithine K00821,K09251 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009308,GO:0009310,GO:0009445,GO:0009447,GO:0009987,GO:0016740,GO:0016769,GO:0019842,GO:0030170,GO:0033094,GO:0034641,GO:0036094,GO:0042402,GO:0042802,GO:0043167,GO:0043168,GO:0044106,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:0097164,GO:1901363,GO:1901564,GO:1901565,GO:1901575 2.6.1.11,2.6.1.17,2.6.1.82 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004785 525.0
PJD3_k127_1681451_7 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00001,K00344 - 1.1.1.1,1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009987 383.0
PJD3_k127_1681451_8 Q COG1233 Phytoene dehydrogenase and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008368 364.0
PJD3_k127_1681451_9 PFAM Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004108 251.0
PJD3_k127_1684008_0 Histidine kinase-like ATPase domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 366.0
PJD3_k127_1684008_1 Response regulator receiver domain - - - 0.000000000000000000000000000001294 124.0
PJD3_k127_1684008_2 Histidine kinase K02030 - - 0.00000000000000000000000001041 117.0
PJD3_k127_1684906_0 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K04085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 491.0
PJD3_k127_1684906_1 Patatin-like phospholipase K07001 GO:0003674,GO:0003824,GO:0016787 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005056 365.0
PJD3_k127_1684906_2 Uridine phosphorylase K00757 - 2.4.2.3 0.0000000000000000000000000000000000000000007963 167.0
PJD3_k127_1684906_3 long-chain fatty acid transport protein - - - 0.0000000000000000000000000001302 119.0
PJD3_k127_1736443_0 COG0477 Permeases of the major facilitator superfamily K16211 - - 2.598e-219 690.0
PJD3_k127_1736443_1 Alpha amylase, catalytic domain K00701 - 2.4.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000001509 263.0
PJD3_k127_1736443_2 Belongs to the glycosyl hydrolase 31 family K01187,K01811,K18820 GO:0003674,GO:0003824,GO:0016740,GO:0016757,GO:0016758,GO:0033825,GO:0046527 2.4.1.161,3.2.1.177,3.2.1.20 0.000000000000000000000000000000000000000000004438 169.0
PJD3_k127_174116_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1144.0
PJD3_k127_174116_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 1.046e-214 671.0
PJD3_k127_174116_10 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008765,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 392.0
PJD3_k127_174116_11 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 387.0
PJD3_k127_174116_12 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 335.0
PJD3_k127_174116_13 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003487 329.0
PJD3_k127_174116_14 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 325.0
PJD3_k127_174116_15 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001131 285.0
PJD3_k127_174116_16 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000001065 261.0
PJD3_k127_174116_17 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.00000000000000000000000000000000000000000000000000000000002078 214.0
PJD3_k127_174116_18 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000000008662 156.0
PJD3_k127_174116_19 Belongs to the Nudix hydrolase family K03574 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008413,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0030145,GO:0033554,GO:0034641,GO:0035539,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044715,GO:0044716,GO:0046483,GO:0046872,GO:0046914,GO:0047429,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 3.6.1.55 0.0000000000000000000000000000003992 126.0
PJD3_k127_174116_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007519 577.0
PJD3_k127_174116_20 Protein of unknown function (DUF721) - - - 0.00002466 51.0
PJD3_k127_174116_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007027 517.0
PJD3_k127_174116_4 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 517.0
PJD3_k127_174116_5 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004329 451.0
PJD3_k127_174116_6 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008006 469.0
PJD3_k127_174116_7 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000811 402.0
PJD3_k127_174116_8 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003787 398.0
PJD3_k127_174116_9 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 388.0
PJD3_k127_1759830_0 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 368.0
PJD3_k127_1759830_1 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000001719 183.0
PJD3_k127_1759830_2 hydrolase K01048 - 3.1.1.5 0.0001147 45.0
PJD3_k127_1795066_1 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000005746 251.0
PJD3_k127_1795066_2 Peptidase family M48 - - - 0.000000000000000000005895 106.0
PJD3_k127_1795066_5 Adenylate cyclase - - - 0.00009713 50.0
PJD3_k127_1803997_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 6.435e-255 809.0
PJD3_k127_1803997_1 COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008488 576.0
PJD3_k127_1803997_10 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.00000000000000000000000000000000000000000001401 171.0
PJD3_k127_1803997_11 PFAM helix-turn-helix domain protein K07729 - - 0.000000000000000002806 87.0
PJD3_k127_1803997_12 MFS-type transporter - - - 0.0001766 51.0
PJD3_k127_1803997_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 538.0
PJD3_k127_1803997_3 COG1131 ABC-type multidrug transport system, ATPase component K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 397.0
PJD3_k127_1803997_4 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005035 373.0
PJD3_k127_1803997_5 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002084 348.0
PJD3_k127_1803997_6 NADH pyrophosphatase zinc ribbon domain K03426 - 3.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 290.0
PJD3_k127_1803997_7 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000000000000000000000000000003832 216.0
PJD3_k127_1803997_8 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000000000000000000000000006819 211.0
PJD3_k127_1803997_9 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000002627 174.0
PJD3_k127_1812497_0 AlkA N-terminal domain K13529,K13530 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 497.0
PJD3_k127_1812497_1 Glutaredoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 388.0
PJD3_k127_1812497_2 Belongs to the Dps family K04047 - - 0.000000000000000000000000000000000000000000000000002356 183.0
PJD3_k127_1812497_3 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000000000000000000000000000000000000000003217 190.0
PJD3_k127_1812497_4 Methyltransferase K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000000000000000007836 184.0
PJD3_k127_188967_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1112.0
PJD3_k127_188967_1 OPT oligopeptide transporter protein - - - 1.389e-301 937.0
PJD3_k127_188967_10 CBS domain containing protein - - - 0.000000000000000000000000000000000000000000000000005389 198.0
PJD3_k127_188967_11 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000001845 182.0
PJD3_k127_188967_12 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000000004417 170.0
PJD3_k127_188967_13 dithiol-disulfide isomerase involved in polyketide biosynthesis - - - 0.000000000000000000000000000000000001409 149.0
PJD3_k127_188967_14 Thioredoxin-like - - - 0.000000000000000000000000000000006089 135.0
PJD3_k127_188967_15 DnaK suppressor protein K06204 - - 0.00000000000000000000000000007125 121.0
PJD3_k127_188967_16 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000001531 115.0
PJD3_k127_188967_17 PFAM OsmC-like protein - - - 0.0000000000000002364 86.0
PJD3_k127_188967_18 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000005486 76.0
PJD3_k127_188967_2 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 3.284e-273 848.0
PJD3_k127_188967_3 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 588.0
PJD3_k127_188967_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 415.0
PJD3_k127_188967_5 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 379.0
PJD3_k127_188967_6 KR domain K07124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008094 286.0
PJD3_k127_188967_7 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001437 292.0
PJD3_k127_188967_9 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000000000000000000000000000000000000000000000002588 202.0
PJD3_k127_1950512_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 289.0
PJD3_k127_1950512_1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003583 250.0
PJD3_k127_1950512_2 Acetyltransferase (GNAT) domain K22441 - 2.3.1.57 0.00000000000000007971 87.0
PJD3_k127_1977841_0 C-terminal, D2-small domain, of ClpB protein K03694 - - 0.0 1021.0
PJD3_k127_1977841_1 DNA segregation ATPase FtsK SpoIIIE K03466 - - 3.219e-288 904.0
PJD3_k127_1977841_2 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 507.0
PJD3_k127_1977841_3 secretion system protein K02453 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006805 444.0
PJD3_k127_1977841_4 Peptidogalycan biosysnthesis/recognition K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 391.0
PJD3_k127_1977841_5 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000006864 258.0
PJD3_k127_1977841_6 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.0000000000000000000000000000000000000004649 151.0
PJD3_k127_1977841_7 Type II secretion system protein C - - - 0.0000000000000000000000000000000000000005178 160.0
PJD3_k127_1977841_8 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000009442 136.0
PJD3_k127_1977841_9 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.00000000000000000000000000000004135 135.0
PJD3_k127_1994402_0 HAD-superfamily hydrolase subfamily IA, variant 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001577 245.0
PJD3_k127_1994402_1 Cytochrome P460 - - - 0.000000000000000000000000000000000000000000000000000000000000000000003312 239.0
PJD3_k127_1994402_2 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000000000000000000000000002307 205.0
PJD3_k127_1994402_3 - - - - 0.0000000000000000000000000000000000000000000002827 177.0
PJD3_k127_2003510_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006009 483.0
PJD3_k127_2003510_1 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000001863 224.0
PJD3_k127_2003510_2 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000002483 98.0
PJD3_k127_2003510_3 histidine kinase A domain protein - - - 0.0000000000001878 80.0
PJD3_k127_201375_0 Belongs to the peptidase S41A family - - - 0.0000000000000000000000000005292 129.0
PJD3_k127_2037800_0 GMC oxidoreductase K03333 - 1.1.3.6 7.19e-221 703.0
PJD3_k127_2037800_1 PFAM membrane bound O-acyl transferase MBOAT family protein - - - 1.244e-212 670.0
PJD3_k127_2037800_10 Universal stress protein family - - - 0.00000000000000000000000000000000000001183 149.0
PJD3_k127_2037800_11 Protein of unknown function (DUF3667) - - - 0.000000000000000000000000000006291 130.0
PJD3_k127_2037800_12 HIRAN domain - - - 0.0000000000000000000000000001687 121.0
PJD3_k127_2037800_13 - - - - 0.000000000000001026 85.0
PJD3_k127_2037800_14 COG0420 DNA repair exonuclease - - - 0.0000000000004662 70.0
PJD3_k127_2037800_15 Adenylate cyclase - - - 0.0000000000005495 71.0
PJD3_k127_2037800_16 - - - - 0.0000000000007804 73.0
PJD3_k127_2037800_2 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000142 289.0
PJD3_k127_2037800_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000204 276.0
PJD3_k127_2037800_4 bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000001346 238.0
PJD3_k127_2037800_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000001014 223.0
PJD3_k127_2037800_6 HD domain - - - 0.0000000000000000000000000000000000000000000000007829 181.0
PJD3_k127_2037800_7 - - - - 0.000000000000000000000000000000000000000000000001917 188.0
PJD3_k127_2037800_8 epimerase - - - 0.00000000000000000000000000000000000000000002006 173.0
PJD3_k127_2037800_9 X-Pro dipeptidyl-peptidase (S15 family) K06889 - - 0.00000000000000000000000000000000000001151 161.0
PJD3_k127_2048872_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1704.0
PJD3_k127_2048872_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 2.595e-259 808.0
PJD3_k127_2048872_10 COG1960 Acyl-CoA dehydrogenases K00253 - 1.3.8.4 0.000000000003134 66.0
PJD3_k127_2048872_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 536.0
PJD3_k127_2048872_3 PFAM aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 472.0
PJD3_k127_2048872_4 N-terminal half of MaoC dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 313.0
PJD3_k127_2048872_5 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001704 240.0
PJD3_k127_2048872_6 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000005535 227.0
PJD3_k127_2048872_7 COG1024 Enoyl-CoA hydratase carnithine racemase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000001714 223.0
PJD3_k127_2048872_8 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000002918 194.0
PJD3_k127_2048872_9 COG0790 FOG TPR repeat, SEL1 subfamily - - - 0.0000000000006657 78.0
PJD3_k127_2058801_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006646 520.0
PJD3_k127_2058801_1 PFAM Dehydrogenase, E1 component K00166 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000252 509.0
PJD3_k127_2058801_10 signal transduction protein with a C-terminal ATPase domain K08082 - 2.7.13.3 0.00000000001245 66.0
PJD3_k127_2058801_2 e3 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 421.0
PJD3_k127_2058801_3 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 411.0
PJD3_k127_2058801_4 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007074 373.0
PJD3_k127_2058801_5 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 370.0
PJD3_k127_2058801_6 Belongs to the mandelate racemase muconate lactonizing enzyme family K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004405 351.0
PJD3_k127_2058801_7 transcriptional K02529,K05499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002127 270.0
PJD3_k127_2058801_8 LytTr DNA-binding domain K02477 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001707 265.0
PJD3_k127_2058801_9 Transcriptional regulator K05800 - - 0.00000000000000000000000000000000000000000000000002203 181.0
PJD3_k127_2058851_0 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 405.0
PJD3_k127_2058851_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004641 332.0
PJD3_k127_2058851_2 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008519 301.0
PJD3_k127_2058851_3 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000000000000000000003045 215.0
PJD3_k127_2058851_4 - - - - 0.0000000000000000001167 92.0
PJD3_k127_2058851_5 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.000000000000006183 83.0
PJD3_k127_2062510_0 Transcriptional regulatory protein, C terminal K07662 - - 0.00000000000000000000000000000000000000000000000000000000000001799 222.0
PJD3_k127_2062510_1 Histidine kinase K02484,K07640,K07642 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000009089 219.0
PJD3_k127_2062510_2 Plasmid maintenance system killer K07334 - - 0.0000000000000000000000000000000000000000003098 159.0
PJD3_k127_2062510_3 COG1233 Phytoene dehydrogenase and related proteins K09516,K09835 - 1.3.99.23,5.2.1.13 0.00000000000000000000000000000000000114 145.0
PJD3_k127_2062510_4 TIGRFAM Addiction module antidote protein, HigA K21498 - - 0.00000000000000000000000000000000001428 138.0
PJD3_k127_2062510_5 Mechanosensitive ion channel - - - 0.00000000000000000000001987 105.0
PJD3_k127_2062510_6 - - - - 0.000000000000000000001444 99.0
PJD3_k127_2062510_7 ATP-independent chaperone mediated protein folding K06006 - - 0.000000000001 74.0
PJD3_k127_2070336_0 Peptidase family M3 K01284 - 3.4.15.5 6.698e-268 842.0
PJD3_k127_2070336_1 epimerase - - - 0.000000000000000000000000000000000000000000001555 175.0
PJD3_k127_2105485_0 Protein of unknown function (DUF3604) - - - 1.134e-211 677.0
PJD3_k127_2105485_1 helix-turn-helix- domain containing protein, AraC type K04033 - - 0.0000000000002855 80.0
PJD3_k127_2105485_2 - - - - 0.0000000006729 66.0
PJD3_k127_2105485_3 OsmC-like protein - - - 0.0003912 43.0
PJD3_k127_2107312_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007426 578.0
PJD3_k127_2107312_1 FMN-dependent dehydrogenase K00101,K00467,K16422 - 1.1.2.3,1.1.3.46,1.13.12.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005087 368.0
PJD3_k127_2107312_2 COG4313 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000001177 171.0
PJD3_k127_2107312_3 - - - - 0.000000000001515 76.0
PJD3_k127_2107312_6 Acetyltransferase (GNAT) domain - - - 0.0006531 44.0
PJD3_k127_2110555_0 Putative porin - GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004262 364.0
PJD3_k127_2110555_1 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071 309.0
PJD3_k127_2110555_2 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003097 282.0
PJD3_k127_2110555_3 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002596 277.0
PJD3_k127_2110555_4 Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein K03611 - - 0.00000000000000000000000000000000000000000000405 168.0
PJD3_k127_2110555_5 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000001244 62.0
PJD3_k127_2110555_6 Glycoprotease family K14742 - - 0.0005763 44.0
PJD3_k127_2143455_0 AAA domain K02450 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004121 427.0
PJD3_k127_2143455_1 Dak2 K07030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 397.0
PJD3_k127_2143455_2 Hydroxymethylglutaryl-coenzyme A reductase K00054 - 1.1.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 340.0
PJD3_k127_2143455_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 318.0
PJD3_k127_2143455_4 GHMP kinases N terminal domain K01597 - 4.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 307.0
PJD3_k127_2143455_5 Belongs to the FPP GGPP synthase family K00795,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009036 296.0
PJD3_k127_2143455_6 GHMP kinases N terminal domain K00938 - 2.7.4.2 0.00000000000000000000000000000000001495 148.0
PJD3_k127_2143455_7 membrane K02451,K03832 - - 0.00000000000299 74.0
PJD3_k127_2150749_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 7.925e-275 856.0
PJD3_k127_2150749_1 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 560.0
PJD3_k127_2150749_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005812 547.0
PJD3_k127_2150749_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 GO:0000270,GO:0000271,GO:0003674,GO:0003824,GO:0003977,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0030203,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 502.0
PJD3_k127_2150749_4 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307,K14387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006571 267.0
PJD3_k127_2150749_5 - - - - 0.000000000000000000000000000000000000000000000000000000009652 212.0
PJD3_k127_2150749_6 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000001588 162.0
PJD3_k127_2150749_7 endoribonuclease L-PSP - - - 0.0000000000000000000000000000000000002909 145.0
PJD3_k127_2150749_8 deacetylase - - - 0.00000000000000005095 81.0
PJD3_k127_2167557_0 COG1233 Phytoene dehydrogenase and related proteins - - - 6.457e-252 786.0
PJD3_k127_2167557_1 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit - - - 6.123e-237 736.0
PJD3_k127_2167557_10 D-amino acid K00303 - 1.5.3.1 0.0000000000000000000000000000000000000000000000000000000002795 209.0
PJD3_k127_2167557_11 HAD-hyrolase-like K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000001058 202.0
PJD3_k127_2167557_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K15372 - 2.6.1.19,2.6.1.55 4.614e-222 698.0
PJD3_k127_2167557_3 amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 512.0
PJD3_k127_2167557_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 469.0
PJD3_k127_2167557_5 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004504 464.0
PJD3_k127_2167557_6 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 464.0
PJD3_k127_2167557_7 Amidohydrolase family K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008412 443.0
PJD3_k127_2167557_8 Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 374.0
PJD3_k127_2167557_9 homocysteine K00547 GO:0003674,GO:0003824,GO:0005488,GO:0006575,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008270,GO:0008757,GO:0008898,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0033477,GO:0033554,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:1901564 2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 334.0
PJD3_k127_218925_0 TIGRFAM transporter, hydrophobe amphiphile efflux-1 (HAE1) family K03296,K18299 - - 0.0 1120.0
PJD3_k127_218925_1 Nitrite reductase K15864 - 1.7.2.1,1.7.99.1 9.115e-306 951.0
PJD3_k127_218925_10 Anti-ECFsigma factor ChrR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 353.0
PJD3_k127_218925_11 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000759 320.0
PJD3_k127_218925_12 Formamidopyrimidine-DNA glycosylase H2TH domain K05522 GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003932 299.0
PJD3_k127_218925_13 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001624 287.0
PJD3_k127_218925_14 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000215 287.0
PJD3_k127_218925_15 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000001323 257.0
PJD3_k127_218925_16 cytochrome c oxidase (Subunit II) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000001684 239.0
PJD3_k127_218925_17 PFAM electron transport protein SCO1 SenC K07152 - - 0.000000000000000000000000000000000000000000000000000001727 200.0
PJD3_k127_218925_18 Transcription factor K21563 - - 0.000000000000000000000000000000000000000000266 167.0
PJD3_k127_218925_19 Invasion gene expression up-regulator, SirB - - - 0.0000000000000000000000000000000000177 139.0
PJD3_k127_218925_2 Cytochrome C and Quinol oxidase polypeptide I - - - 9.094e-253 790.0
PJD3_k127_218925_20 oxygen carrier activity K07216 - - 0.000000000000000000000000000000000504 136.0
PJD3_k127_218925_21 - - - - 0.000000000000000000000000000967 119.0
PJD3_k127_218925_22 protein conserved in bacteria - - - 0.0000000000000002287 80.0
PJD3_k127_218925_23 - - - - 0.00000000000004256 73.0
PJD3_k127_218925_3 COG3653 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 6.854e-215 681.0
PJD3_k127_218925_4 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 521.0
PJD3_k127_218925_5 TonB dependent receptor K16087,K16089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 442.0
PJD3_k127_218925_6 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 428.0
PJD3_k127_218925_7 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000967 409.0
PJD3_k127_218925_8 mandelate racemase muconate lactonizing K01776,K02549,K19802 - 4.2.1.113,5.1.1.20,5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 380.0
PJD3_k127_218925_9 Glutathione S-transferase K07393 - 1.8.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 353.0
PJD3_k127_2197948_0 Cation efflux family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 391.0
PJD3_k127_2197948_1 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 364.0
PJD3_k127_2197948_2 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 325.0
PJD3_k127_2197948_3 GTP cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006275 309.0
PJD3_k127_2197948_4 Strictosidine synthase K02057,K10440 - - 0.00000000000000000000000000000002717 131.0
PJD3_k127_2197948_5 - - - - 0.00000000000000000000001904 115.0
PJD3_k127_2197948_6 - - - - 0.0000000000000000009032 90.0
PJD3_k127_2221818_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1233.0
PJD3_k127_2221818_1 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005618 506.0
PJD3_k127_2221818_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 330.0
PJD3_k127_2221818_3 Prokaryotic N-terminal methylation motif K02655 - - 0.00000000000000000000000000000004303 135.0
PJD3_k127_2221818_4 NMT1-like family - - - 0.0000000005384 63.0
PJD3_k127_2223642_0 Belongs to the sulfate adenylyltransferase family K00958 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 451.0
PJD3_k127_2223642_1 DsrE/DsrF/DrsH-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002922 249.0
PJD3_k127_2223642_2 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes - - - 0.000000000000000000000000000000000000000000000000006999 189.0
PJD3_k127_2223642_3 Sulfur carrier protein involved in sulfur trafficking in the cell. Part of a sulfur-relay system required for 2-thiolation during synthesis of 2-thiouridine of the modified wobble base 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) in tRNA. Interacts with IscS and stimulates its cysteine desulfurase activity. Accepts an activated sulfur from IscS, which is then transferred to TusD, and thus determines the direction of sulfur flow from IscS to 2-thiouridine formation. Also appears to be involved in sulfur transfer for the biosynthesis of molybdopterin K04085 - - 0.0000000000000000000000000003484 114.0
PJD3_k127_2223642_4 succinate dehydrogenase fumarate reductase, flavoprotein subunit K00394 - 1.8.99.2 0.0000000000000000000001019 100.0
PJD3_k127_2256078_0 Molecular chaperone. Has ATPase activity K04079 - - 5.195e-241 760.0
PJD3_k127_2256078_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 1.084e-228 739.0
PJD3_k127_2256078_10 Transcriptional regulator K13634 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 359.0
PJD3_k127_2256078_11 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 328.0
PJD3_k127_2256078_12 Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)- (lauroyl)-lipid IV(A) K02517,K12974 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0006082,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008951,GO:0009058,GO:0009245,GO:0009247,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009628,GO:0009987,GO:0016020,GO:0016051,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0036103,GO:0036104,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0046467,GO:0046493,GO:0050896,GO:0071704,GO:0071944,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.241,2.3.1.242 0.0000000000000000000000000000000000000000000000000000000000000000000000001935 259.0
PJD3_k127_2256078_13 RIO1 family K11211 - 2.7.1.166 0.000000000000000000000000000000000000000000000000000000008539 208.0
PJD3_k127_2256078_14 SelR domain - - - 0.000000000000000000000000000000000000000000000000002666 184.0
PJD3_k127_2256078_15 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000006548 174.0
PJD3_k127_2256078_16 NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000004428 165.0
PJD3_k127_2256078_17 protein conserved in bacteria - - - 0.00000000000000000000003707 100.0
PJD3_k127_2256078_18 SH3 domain K07184 - - 0.00000000008465 70.0
PJD3_k127_2256078_2 Domain of unknown function (DUF4478) K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 592.0
PJD3_k127_2256078_3 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 504.0
PJD3_k127_2256078_4 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 529.0
PJD3_k127_2256078_5 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 443.0
PJD3_k127_2256078_6 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 438.0
PJD3_k127_2256078_7 heptosyltransferase K02843 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 387.0
PJD3_k127_2256078_8 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 385.0
PJD3_k127_2256078_9 Glycosyltransferase family 9 (heptosyltransferase) K02849 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 368.0
PJD3_k127_2365425_0 MatE - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006862,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015215,GO:0015230,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0034220,GO:0035350,GO:0035442,GO:0035672,GO:0035673,GO:0042886,GO:0042887,GO:0042938,GO:0044464,GO:0044610,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071916,GO:0071944,GO:0098656,GO:1901264,GO:1901505,GO:1901679,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007097 519.0
PJD3_k127_2365425_1 CoA-transferase family III K01796 - 5.1.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 443.0
PJD3_k127_2365425_10 Ceramidase - - - 0.0000000000000000000000000000000000000000000000000000000000000001964 231.0
PJD3_k127_2365425_11 Protein of unknown function (DUF819) - - - 0.0000000000000000000000000000000000000000000000000000000000648 219.0
PJD3_k127_2365425_12 Zn-dependent hydrolases of the beta-lactamase fold - - - 0.0000000000000000000000000000000000000000000000000000000004848 220.0
PJD3_k127_2365425_13 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.00000000000000000000000000000000000000000000000000008201 214.0
PJD3_k127_2365425_14 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000001727 192.0
PJD3_k127_2365425_15 CBS domain - - - 0.0000000000000000000000000000000000000000000003279 171.0
PJD3_k127_2365425_16 neutral zinc metallopeptidase K07054 - - 0.000000000000000000000000000000000000000000004172 168.0
PJD3_k127_2365425_17 Cupin domain - - - 0.0000000000000000000000000000009574 124.0
PJD3_k127_2365425_18 COG0729 Outer membrane protein K07278 - - 0.00000000000000000000000000001541 128.0
PJD3_k127_2365425_19 PFAM SNARE associated Golgi protein - - - 0.00000000000000000000000008551 118.0
PJD3_k127_2365425_2 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 436.0
PJD3_k127_2365425_20 GIY-YIG catalytic domain K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.0000000000000000000000446 103.0
PJD3_k127_2365425_21 NERD domain protein - - - 0.0000000000000000000005134 105.0
PJD3_k127_2365425_22 PFAM Integral membrane protein TerC K05794 - - 0.00000000000001092 77.0
PJD3_k127_2365425_23 - - - - 0.0000000000003793 78.0
PJD3_k127_2365425_25 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0002768 48.0
PJD3_k127_2365425_3 Transcriptional regulator K06714,K07713 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 426.0
PJD3_k127_2365425_4 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 404.0
PJD3_k127_2365425_5 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005821 349.0
PJD3_k127_2365425_6 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009805 314.0
PJD3_k127_2365425_7 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003706 317.0
PJD3_k127_2365425_8 transport system, ATPase component K02013,K05776 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000001779 265.0
PJD3_k127_2365425_9 Phospholipase/Carboxylesterase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000003531 257.0
PJD3_k127_2374253_0 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005178 597.0
PJD3_k127_2374253_1 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 587.0
PJD3_k127_2374253_2 overlaps another CDS with the same product name - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007393 552.0
PJD3_k127_2374253_3 PFAM Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 481.0
PJD3_k127_2374253_4 PFAM AMP-dependent synthetase and ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 424.0
PJD3_k127_2374253_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000003383 233.0
PJD3_k127_2374253_6 - - - - 0.000000000000000000000000000000000000000000000001027 189.0
PJD3_k127_2419477_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 307.0
PJD3_k127_2419477_1 Plasmid stabilization system K19092 - - 0.000000000000000000000000004204 117.0
PJD3_k127_2419477_2 toxin-antitoxin pair type II binding - - - 0.000000000000000000004632 105.0
PJD3_k127_248337_0 NAD(P)H-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 380.0
PJD3_k127_248337_1 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 294.0
PJD3_k127_2511287_0 Glycosyl hydrolase family 81 - - - 0.0 1392.0
PJD3_k127_2511287_1 COG1472 Beta-glucosidase-related glycosidases K05349 - 3.2.1.21 2.125e-231 730.0
PJD3_k127_2511287_2 Major facilitator Superfamily K03292 - - 2.661e-207 654.0
PJD3_k127_25140_0 Ethylbenzene dehydrogenase - - - 0.0000000000000006266 89.0
PJD3_k127_25140_1 Cytochrome C biogenesis protein - GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0008152,GO:0015886,GO:0016020,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0055114,GO:0071702,GO:0071705,GO:0071944,GO:1901678 - 0.0000000000001128 76.0
PJD3_k127_25140_2 ResB protein required for cytochrome c biosynthesis K07399 - - 0.0000000006754 70.0
PJD3_k127_25140_3 Tetratricopeptide repeat - - - 0.0000003862 59.0
PJD3_k127_25140_4 PFAM UvrB UvrC protein K08999,K19405,K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 2.7.14.1 0.0008408 52.0
PJD3_k127_252653_0 Domain of unknown function (DUF3362) - - - 0.0 1186.0
PJD3_k127_252653_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 3.957e-259 813.0
PJD3_k127_252653_10 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000002565 147.0
PJD3_k127_252653_11 Cold shock K03704 - - 0.000000000000000000000000000007955 121.0
PJD3_k127_252653_12 Redoxin - - - 0.00000000000000000000000000001211 126.0
PJD3_k127_252653_13 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000005658 122.0
PJD3_k127_252653_14 - - - - 0.0000000000000000000003238 101.0
PJD3_k127_252653_15 - - - - 0.000000000006878 77.0
PJD3_k127_252653_2 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 1.154e-198 631.0
PJD3_k127_252653_3 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000675 430.0
PJD3_k127_252653_4 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 374.0
PJD3_k127_252653_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001154 278.0
PJD3_k127_252653_6 Conserved hypothetical protein (DUF2461) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009964 261.0
PJD3_k127_252653_7 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000009758 267.0
PJD3_k127_252653_8 protein serine/threonine phosphatase activity K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000001751 218.0
PJD3_k127_252653_9 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000002568 223.0
PJD3_k127_2628028_0 Monomeric isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1205.0
PJD3_k127_2628028_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000004821 72.0
PJD3_k127_2637755_0 Peptidase m28 - - - 7.631e-195 623.0
PJD3_k127_2637755_1 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 297.0
PJD3_k127_2637755_2 (GGDEF) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001489 251.0
PJD3_k127_2637755_3 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000000000000000002619 194.0
PJD3_k127_2637755_5 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.000025 48.0
PJD3_k127_2642896_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 415.0
PJD3_k127_2642896_1 CHRD domain - - - 0.00000000000000000000000000000000002565 137.0
PJD3_k127_2654698_0 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000003217 195.0
PJD3_k127_2654698_1 Alternative oxidase K17893 - 1.10.3.11 0.0000000000000000000000000000000000000000067 156.0
PJD3_k127_2654698_3 Protein of unknown function (DUF4242) - - - 0.000000001022 61.0
PJD3_k127_2654698_4 permease K07089 - - 0.00000004475 55.0
PJD3_k127_2655022_0 abc transporter atp-binding protein K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 370.0
PJD3_k127_2655022_1 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000000000000000000000000000003811 161.0
PJD3_k127_2655022_2 - K01992 - - 0.000000000000000000000000000000003048 140.0
PJD3_k127_2655022_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000001126 109.0
PJD3_k127_2656078_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1091.0
PJD3_k127_2656078_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008746,GO:0008750,GO:0009117,GO:0009987,GO:0016020,GO:0016021,GO:0016491,GO:0016651,GO:0016652,GO:0019362,GO:0019637,GO:0031224,GO:0031226,GO:0034641,GO:0036094,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0046483,GO:0046496,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051287,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072524,GO:0097159,GO:1901265,GO:1901360,GO:1901363,GO:1901564 1.6.1.2 5.913e-234 733.0
PJD3_k127_2656078_10 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006418,GO:0006431,GO:0006464,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019752,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006242 323.0
PJD3_k127_2656078_11 PFAM Peptidoglycan-binding lysin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006046 310.0
PJD3_k127_2656078_12 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 294.0
PJD3_k127_2656078_13 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000519 237.0
PJD3_k127_2656078_14 PA26 p53-induced protein (sestrin) - - - 0.00000000000000000000000000000000000000000000000000000002782 201.0
PJD3_k127_2656078_15 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000000000000000000000000839 194.0
PJD3_k127_2656078_16 Belongs to the Smg family K03747 - - 0.0000000000000000000000000000000000000000000005029 172.0
PJD3_k127_2656078_17 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-) CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000779 162.0
PJD3_k127_2656078_18 Domain of unknown function (DUF4390) - - - 0.00000000000000000000000000000007401 133.0
PJD3_k127_2656078_19 Sporulation related domain - - - 0.0000000000000000000000003638 113.0
PJD3_k127_2656078_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 3.875e-215 691.0
PJD3_k127_2656078_20 Protein of unknown function (DUF3106) - - - 0.00000000424 64.0
PJD3_k127_2656078_21 - - - - 0.0002373 50.0
PJD3_k127_2656078_22 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0003617 44.0
PJD3_k127_2656078_3 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.157e-213 677.0
PJD3_k127_2656078_4 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 604.0
PJD3_k127_2656078_5 Peptidase inhibitor I9 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003741 499.0
PJD3_k127_2656078_6 response regulator receiver K13599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002298 457.0
PJD3_k127_2656078_7 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0003824,GO:0004109,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0016634,GO:0018130,GO:0019438,GO:0030145,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046906,GO:0046914,GO:0046983,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005689 439.0
PJD3_k127_2656078_8 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 384.0
PJD3_k127_2656078_9 TIGRFAM DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 347.0
PJD3_k127_2685029_0 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.0 1032.0
PJD3_k127_2685029_1 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 349.0
PJD3_k127_2689050_0 Pfam Sulfatase K01130 - 3.1.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 557.0
PJD3_k127_2689050_1 Elements of external origin K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 319.0
PJD3_k127_2689050_2 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 290.0
PJD3_k127_2689050_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004624 249.0
PJD3_k127_2689050_4 COG2801 Transposase and inactivated derivatives K07497 - - 0.000000000000000000000000000003193 121.0
PJD3_k127_268961_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 480.0
PJD3_k127_268961_1 SMART Protein-tyrosine phosphatase, low molecular weight K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000001513 178.0
PJD3_k127_268961_2 COGs COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000006851 160.0
PJD3_k127_268961_3 Domain of unknown function (DUF4397) - - - 0.0000000000000003806 91.0
PJD3_k127_2689747_0 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 392.0
PJD3_k127_2689747_1 Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000000000000000000000000000007138 241.0
PJD3_k127_2689747_2 GTP-binding protein TypA K06207 - - 0.000000000000000000000000000000000000000000000000000000000000000009472 227.0
PJD3_k127_2689747_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000002691 221.0
PJD3_k127_2689747_4 - - - - 0.0000000000000000002525 97.0
PJD3_k127_2689747_5 NlpC/P60 family - - - 0.000000000000000512 79.0
PJD3_k127_2700381_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1503.0
PJD3_k127_2700381_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.843e-236 736.0
PJD3_k127_2700381_10 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 GO:0002943,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009314,GO:0009451,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0050896,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 381.0
PJD3_k127_2700381_11 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 393.0
PJD3_k127_2700381_12 May be involved in the transport of PQQ or its precursor to the periplasm K06136 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 359.0
PJD3_k127_2700381_13 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase K01082 GO:0000103,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008252,GO:0008441,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872 3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008765 317.0
PJD3_k127_2700381_14 molybdopterin biosynthesis K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 323.0
PJD3_k127_2700381_15 2-hydroxychromene-2-carboxylate isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 304.0
PJD3_k127_2700381_16 Methylates ribosomal protein L11 K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003842 285.0
PJD3_k127_2700381_17 Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003222 280.0
PJD3_k127_2700381_18 50S ribosome-binding GTPase K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001311 281.0
PJD3_k127_2700381_19 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000001558 229.0
PJD3_k127_2700381_2 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 4.723e-231 722.0
PJD3_k127_2700381_20 subfamily IA, variant 3 K20881 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000001712 207.0
PJD3_k127_2700381_21 Phage tail sheath protein K06907 - - 0.0000000000000000000000000000000000000000000000000132 199.0
PJD3_k127_2700381_22 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 GO:0003674,GO:0003824,GO:0003989,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009305,GO:0009987,GO:0016049,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0040007,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576 - 0.000000000000000000000000000000000000000000000002928 178.0
PJD3_k127_2700381_23 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.00000000000000000000000000000000000000000000002384 183.0
PJD3_k127_2700381_24 Belongs to the thioredoxin family K03671 GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.000000000000000000000000000000000000000000005694 164.0
PJD3_k127_2700381_25 thiolester hydrolase activity K06889,K07000 - - 0.000000000000000000000000000000000000000006491 160.0
PJD3_k127_2700381_26 DNA-templated transcription, initiation K03088,K03091 - - 0.0000000000000000000000000000000000162 143.0
PJD3_k127_2700381_27 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0019899,GO:0097159,GO:1901363 - 0.0000000000000000000000000001572 118.0
PJD3_k127_2700381_28 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000001945 109.0
PJD3_k127_2700381_29 - - - - 0.0000000000000000000007497 99.0
PJD3_k127_2700381_3 COG0138 AICAR transformylase IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) K00602 GO:0003674,GO:0003824,GO:0004643,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.2.3,3.5.4.10 9.774e-214 677.0
PJD3_k127_2700381_30 Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters K03557 - - 0.00000000000000000005475 92.0
PJD3_k127_2700381_32 small protein containing a coiled-coil domain - - - 0.00000000000002488 74.0
PJD3_k127_2700381_33 Cadmium resistance transporter - - - 0.0000000003372 68.0
PJD3_k127_2700381_34 - - - - 0.00000002248 56.0
PJD3_k127_2700381_35 Glycosyl transferase 4-like K00754 - - 0.0000001956 59.0
PJD3_k127_2700381_36 Mj0042 family finger-like - - - 0.0000002579 64.0
PJD3_k127_2700381_38 zinc-ribbon domain - - - 0.0003399 54.0
PJD3_k127_2700381_4 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 6.897e-213 689.0
PJD3_k127_2700381_5 Bacterial protein of unknown function (DUF885) - - - 8.153e-211 672.0
PJD3_k127_2700381_6 Belongs to the GARS family K01945,K13713 GO:0000166,GO:0003674,GO:0003824,GO:0004637,GO:0005488,GO:0005524,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.2.6,6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 606.0
PJD3_k127_2700381_7 DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K03732 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 527.0
PJD3_k127_2700381_8 Domain of unknown function (DUF697) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 480.0
PJD3_k127_2700381_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 414.0
PJD3_k127_2711018_0 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06132 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0090483,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009978 476.0
PJD3_k127_2711018_1 oxidoreductase K07222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005328 432.0
PJD3_k127_2711018_10 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000001233 84.0
PJD3_k127_2711018_11 PFAM MltA-interacting MipA family protein K07274 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.00000000003326 76.0
PJD3_k127_2711018_2 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 329.0
PJD3_k127_2711018_3 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002365 278.0
PJD3_k127_2711018_4 AraC family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001313 274.0
PJD3_k127_2711018_5 mechanosensitive ion channel K05802 - - 0.00000000000000000000000000000000000000000000000000000000000000000007067 234.0
PJD3_k127_2711018_6 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000005097 199.0
PJD3_k127_2711018_7 hyperosmotic response - - - 0.000000000000000000000000000000000000000000192 168.0
PJD3_k127_2711018_9 TRAP transporter, solute receptor (TAXI family - - - 0.00000000000000000000000000000000004845 150.0
PJD3_k127_2711960_0 DNA methylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 383.0
PJD3_k127_2711960_1 Integrase core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008211 347.0
PJD3_k127_2711960_2 Transposase K07497 - - 0.000000000000000000000000000419 115.0
PJD3_k127_2711960_3 Subunit R is required for both nuclease and ATPase activities, but not for modification K01153 - 3.1.21.3 0.00000000000172 68.0
PJD3_k127_2722481_0 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 1.354e-269 830.0
PJD3_k127_2722481_1 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009842 469.0
PJD3_k127_2722481_2 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004365 410.0
PJD3_k127_2735356_0 cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 436.0
PJD3_k127_2735356_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 313.0
PJD3_k127_2735356_2 Family of unknown function (DUF5329) - - - 0.00000000000000000000000000000000000003398 146.0
PJD3_k127_2735356_3 - - - - 0.0000000000000000000000000000003783 130.0
PJD3_k127_2735356_4 - - - - 0.0000000000000000000000000000007906 132.0
PJD3_k127_2735356_5 - - - - 0.00000000000000000000000003211 112.0
PJD3_k127_2756244_0 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000005435 240.0
PJD3_k127_2756244_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000001574 231.0
PJD3_k127_2756244_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000001651 228.0
PJD3_k127_2756244_3 Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000009276 224.0
PJD3_k127_2756244_4 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000002657 124.0
PJD3_k127_2756244_5 amine dehydrogenase activity - - - 0.0000000000000002369 81.0
PJD3_k127_2760402_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 5.085e-207 655.0
PJD3_k127_2760402_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 589.0
PJD3_k127_2760402_10 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000004223 222.0
PJD3_k127_2760402_11 protein, YerC YecD - - - 0.000000000000000000000000000003096 122.0
PJD3_k127_2760402_12 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000001433 58.0
PJD3_k127_2760402_2 cystathionine K01739 - 2.5.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000838 472.0
PJD3_k127_2760402_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006916 462.0
PJD3_k127_2760402_4 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005195 451.0
PJD3_k127_2760402_5 Histidine biosynthesis bifunctional protein HisB K01089 GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042578,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.1.3.15,4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 444.0
PJD3_k127_2760402_6 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006706 436.0
PJD3_k127_2760402_7 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 GO:0000105,GO:0003674,GO:0003824,GO:0003879,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002506 348.0
PJD3_k127_2760402_8 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000007921 274.0
PJD3_k127_2760402_9 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000001026 257.0
PJD3_k127_2783186_0 Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle K01596 - 4.1.1.32 2.635e-272 850.0
PJD3_k127_2783186_1 Phosphate acyltransferases - - - 1.377e-195 621.0
PJD3_k127_2783186_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003513 400.0
PJD3_k127_2783186_3 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 322.0
PJD3_k127_2783186_4 protein methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003072 288.0
PJD3_k127_2783186_5 Adenylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000001998 219.0
PJD3_k127_2795302_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 1.27e-293 911.0
PJD3_k127_2795302_1 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 1.702e-273 862.0
PJD3_k127_2795302_10 Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl- ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)- decenoyl-ACP. Can catalyze the dehydratase reaction for beta- hydroxyacyl-ACPs with saturated chain lengths up to 16 0, being most active on intermediate chain length K01716 - 4.2.1.59,5.3.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006992 278.0
PJD3_k127_2795302_11 Phenylacetic acid catabolic protein K02611 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007696 282.0
PJD3_k127_2795302_12 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000002474 261.0
PJD3_k127_2795302_13 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000001102 183.0
PJD3_k127_2795302_14 Iron-sulfur cluster assembly protein K02612 - - 0.0000000000000000000000000000000000000000000003027 174.0
PJD3_k127_2795302_15 phenylacetate-CoA oxygenase K02610 GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0098754,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000000003297 153.0
PJD3_k127_2795302_16 KR domain - - - 0.0000000000000000000000000000000000003144 149.0
PJD3_k127_2795302_17 - - - - 0.00000000000000000000000000000000007565 140.0
PJD3_k127_2795302_18 PFAM thioesterase superfamily K02614 - - 0.000000000000000000000000000000003248 136.0
PJD3_k127_2795302_19 FixH K09926 - - 0.0000000000000000001912 95.0
PJD3_k127_2795302_2 cation transport ATPase K01533 - 3.6.3.4 1.63e-203 659.0
PJD3_k127_2795302_20 Cytochrome oxidase maturation protein - - - 0.0000000000001795 71.0
PJD3_k127_2795302_3 catalyzes a condensation reaction in fatty acid biosynthesis addition of an acyl acceptor of two carbons from malonyl-ACP K00647 - 2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 564.0
PJD3_k127_2795302_4 Phenylacetate-CoA oxygenase K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 519.0
PJD3_k127_2795302_5 TIGRFAM cytochrome c oxidase accessory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006333 440.0
PJD3_k127_2795302_6 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001 359.0
PJD3_k127_2795302_7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 K02613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 327.0
PJD3_k127_2795302_8 COG3327 Phenylacetic acid-responsive transcriptional repressor K02616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 313.0
PJD3_k127_2795302_9 membrane transporter protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 312.0
PJD3_k127_2841183_0 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004737 328.0
PJD3_k127_2841183_1 Deoxynucleoside kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002452 272.0
PJD3_k127_2841183_2 PFAM Lytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007152 255.0
PJD3_k127_2841183_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000006692 200.0
PJD3_k127_2841183_5 COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases K01295 - 3.4.17.11 0.0002356 43.0
PJD3_k127_2870192_0 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 1.669e-309 970.0
PJD3_k127_2870192_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 563.0
PJD3_k127_2870192_2 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 482.0
PJD3_k127_2870192_3 Helix-turn-helix domain, rpiR family - - - 0.00000000000000000000000000000000000000000000000005549 189.0
PJD3_k127_2870192_4 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000344 93.0
PJD3_k127_2871126_0 Cytochrome c-type biogenesis protein K02198 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 1.99e-241 762.0
PJD3_k127_2871126_1 Nitronate monooxygenase K00459 - 1.13.12.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007662 418.0
PJD3_k127_2871126_2 Periplasmic protein thiol K02199 - - 0.0000000000000000000000000000000000000000000000000000009822 197.0
PJD3_k127_2871126_3 Pyridoxal-dependent decarboxylase conserved domain - - - 0.00000000000000000000000000000000000000000000001744 175.0
PJD3_k127_2871126_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000003725 149.0
PJD3_k127_2871126_5 Tetratricopeptide repeat K02200 - - 0.00000000000000000000000000001276 131.0
PJD3_k127_2871126_6 subunit of a heme lyase K02200 - - 0.0000000000000000000000000001217 120.0
PJD3_k127_2871126_7 Thioesterase superfamily protein - - - 0.000000000000000000000000001044 117.0
PJD3_k127_2871126_8 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000001185 100.0
PJD3_k127_2895002_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 540.0
PJD3_k127_2895002_1 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 464.0
PJD3_k127_2895002_2 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000002258 202.0
PJD3_k127_2895002_3 Cytochrome c-type biogenesis protein K02200 - - 0.000000002789 64.0
PJD3_k127_2902502_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 0.0 1096.0
PJD3_k127_2902502_1 Alginate lyase K20525 - 4.2.2.26 0.0 1079.0
PJD3_k127_2902502_2 Natural resistance-associated macrophage protein - - - 8.519e-198 623.0
PJD3_k127_2902502_3 Alginate lyase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 466.0
PJD3_k127_2902502_4 Glycosyl Hydrolase Family 88 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 374.0
PJD3_k127_2902502_5 COG3265 Gluconate kinase K00851 - 2.7.1.12 0.00000000000000000000000000000000000000000000000000000000005935 208.0
PJD3_k127_2902502_6 - - - - 0.000000003151 59.0
PJD3_k127_2902502_7 - - - - 0.00000005419 66.0
PJD3_k127_2913219_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005709 551.0
PJD3_k127_2913219_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002817 291.0
PJD3_k127_2913219_2 - - - - 0.0000000000000000000000000000000000000000000001229 173.0
PJD3_k127_2913219_3 - - - - 0.0000000000000000000000000000000000000000000002676 174.0
PJD3_k127_2913219_4 - - - - 0.00000000000000000000000000000000008462 150.0
PJD3_k127_2913219_5 peptidase - - - 0.000000000000000008473 93.0
PJD3_k127_2913219_6 Cys/Met metabolism PLP-dependent enzyme K14287 - 2.6.1.88 0.000000000000001287 77.0
PJD3_k127_2913219_7 PFAM FeoA K04758 - - 0.000005702 51.0
PJD3_k127_2926391_0 histidine kinase A domain protein K02030 - - 2.623e-253 841.0
PJD3_k127_2926391_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 428.0
PJD3_k127_2926391_2 Histidine kinase-like ATPase domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 375.0
PJD3_k127_2926391_3 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 293.0
PJD3_k127_2926391_4 PFAM integrase family protein K07357,K07358 - - 0.0000000000000000000000000000000000000000000000000000000000343 212.0
PJD3_k127_2926391_5 STAS domain - - - 0.000000000000000000000000000000009568 130.0
PJD3_k127_2926391_6 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K07814 - - 0.0000000000000000000000000000001417 130.0
PJD3_k127_2926391_7 Helix-turn-helix of insertion element transposase - - - 0.00002329 52.0
PJD3_k127_2945727_0 peptidase S58 DmpA K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008995 491.0
PJD3_k127_2945727_1 FAD linked oxidase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000838 336.0
PJD3_k127_2998487_0 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 3.143e-318 990.0
PJD3_k127_2998487_1 COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K00375,K05825 - - 1.619e-235 742.0
PJD3_k127_2998487_2 Carbon-nitrogen hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 358.0
PJD3_k127_2998487_3 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000000000000000002861 203.0
PJD3_k127_2998487_4 Antioxidant, AhpC TSA family K03564 - 1.11.1.15 0.00000000000000000000000000001099 125.0
PJD3_k127_3045143_0 Neisseria PilC beta-propeller domain K02674 - - 4.774e-235 763.0
PJD3_k127_3045143_1 Ammonium transporter K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008037 595.0
PJD3_k127_3045143_10 at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA) K04752 - - 0.000000000000000000000000000000000000000000000000000001787 194.0
PJD3_k127_3045143_11 Prepilin-type cleavage methylation-like K02672 - - 0.0000000000000000000000000000000000000000000000007705 186.0
PJD3_k127_3045143_12 Domain of unknown function DUF302 - - - 0.0000000000000000000000000000000000000000006409 161.0
PJD3_k127_3045143_13 Uroporphyrinogen III synthase K01719 - 4.2.1.75 0.000000000000000000000000000000000002815 149.0
PJD3_k127_3045143_14 transcriptional - - - 0.00000000000000000000000000000009554 127.0
PJD3_k127_3045143_15 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000005564 120.0
PJD3_k127_3045143_16 enzyme of heme biosynthesis K02496 - 2.1.1.107 0.00000000000000000000000005862 123.0
PJD3_k127_3045143_17 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.000000000000000000000001426 108.0
PJD3_k127_3045143_18 Membrane fusogenic activity K09806 - - 0.0000000000000000001774 90.0
PJD3_k127_3045143_19 - - - - 0.0000000006316 66.0
PJD3_k127_3045143_2 ATPase with chaperone activity K07391 GO:0003674,GO:0003824,GO:0004176,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0042623,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 531.0
PJD3_k127_3045143_20 Domain of unknown function (DUF4124) - - - 0.000000001019 67.0
PJD3_k127_3045143_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018065,GO:0018130,GO:0018160,GO:0018193,GO:0018198,GO:0019438,GO:0019538,GO:0033013,GO:0033014,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 323.0
PJD3_k127_3045143_4 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001783 271.0
PJD3_k127_3045143_5 Response regulator of the LytR AlgR family K08083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001929 249.0
PJD3_k127_3045143_6 enzyme of heme biosynthesis K02498 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000007301 257.0
PJD3_k127_3045143_7 involved in chromosome partitioning K03496 - - 0.00000000000000000000000000000000000000000000000000000000000008171 220.0
PJD3_k127_3045143_8 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000001512 213.0
PJD3_k127_3045143_9 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000000000000000000000004231 215.0
PJD3_k127_3076139_0 Bacterial protein of unknown function (DUF885) - - - 1.881e-218 693.0
PJD3_k127_3076139_1 modulator of DNA gyrase K03568 - - 2.369e-207 655.0
PJD3_k127_3076139_10 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003336 367.0
PJD3_k127_3076139_11 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 372.0
PJD3_k127_3076139_12 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 331.0
PJD3_k127_3076139_13 Type II secretory pathway component ExeA K02450,K12283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009982 316.0
PJD3_k127_3076139_14 L-aminopeptidase D-esterase K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 314.0
PJD3_k127_3076139_15 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009987 302.0
PJD3_k127_3076139_16 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K10914 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 284.0
PJD3_k127_3076139_17 Amidinotransferase K01482 - 3.5.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009527 285.0
PJD3_k127_3076139_18 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03184,K03185,K18800 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001087 290.0
PJD3_k127_3076139_19 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001194 276.0
PJD3_k127_3076139_2 metal-dependent hydrolase with the TIM-barrel fold - - - 4.464e-195 623.0
PJD3_k127_3076139_20 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015934,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070180,GO:0071704,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.000000000000000000000000000000000000000000000000000000000000000000000032 244.0
PJD3_k127_3076139_21 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000009619 230.0
PJD3_k127_3076139_22 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.000000000000000000000000000000000000000000000000000000000000000009188 235.0
PJD3_k127_3076139_23 membrane - - - 0.00000000000000000000000000000000000000000000000000000002484 208.0
PJD3_k127_3076139_24 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000002784 198.0
PJD3_k127_3076139_25 Protein of unknown function, DUF481 K07283 - - 0.00000000000000000000000000000000000000000000000000102 192.0
PJD3_k127_3076139_26 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000607 164.0
PJD3_k127_3076139_27 Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host K05801 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0051087,GO:0071944 - 0.00000000000000000000000000000000000009671 151.0
PJD3_k127_3076139_28 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.0000000000000000000000000000000006004 132.0
PJD3_k127_3076139_29 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.000000000000000000000000000000002124 136.0
PJD3_k127_3076139_3 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005173 594.0
PJD3_k127_3076139_30 Belongs to the UPF0149 family K09895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000002733 112.0
PJD3_k127_3076139_31 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000004158 100.0
PJD3_k127_3076139_32 Belongs to the UPF0307 family K09889 - - 0.00000000000000003386 83.0
PJD3_k127_3076139_33 TIGRFAM TIGR02449 family protein K09892 - - 0.00000000003217 71.0
PJD3_k127_3076139_34 - - - - 0.0000000004993 71.0
PJD3_k127_3076139_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003732 503.0
PJD3_k127_3076139_5 7 transmembrane helices usually fused to an inactive transglutaminase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 491.0
PJD3_k127_3076139_6 modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007883 483.0
PJD3_k127_3076139_7 SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 428.0
PJD3_k127_3076139_8 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases K03185,K18800 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008681,GO:0009058,GO:0009108,GO:0009314,GO:0009416,GO:0009628,GO:0009987,GO:0016491,GO:0016705,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901576,GO:1901661,GO:1901663 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 393.0
PJD3_k127_3076139_9 TIGRFAM alpha-L-glutamate ligase-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000457 382.0
PJD3_k127_3129876_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002133 258.0
PJD3_k127_3129876_1 Deoxyribodipyrimidine photo-lyase-related protein K06876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009582 252.0
PJD3_k127_3129876_2 PFAM SOUL heme-binding protein - - - 0.0000005097 53.0
PJD3_k127_3208867_0 COG0471 Di- and tricarboxylate transporters - - - 1.012e-238 761.0
PJD3_k127_3208867_1 Reductase C-terminal K00529 - 1.18.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 463.0
PJD3_k127_3208867_2 Alpha beta hydrolase - - - 0.000000000000000000000001994 105.0
PJD3_k127_3221941_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 334.0
PJD3_k127_3221941_1 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 300.0
PJD3_k127_3221941_2 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000000000000000857 177.0
PJD3_k127_3221941_3 Protein of unknown function (DUF2834) - - - 0.0000000000000002426 84.0
PJD3_k127_3343636_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1441.0
PJD3_k127_3343636_1 COG1960 Acyl-CoA dehydrogenases K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000228 604.0
PJD3_k127_3343636_2 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 589.0
PJD3_k127_3343636_3 Sodium:neurotransmitter symporter family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003216 545.0
PJD3_k127_3343636_4 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004622 406.0
PJD3_k127_3343636_5 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 368.0
PJD3_k127_3343636_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 301.0
PJD3_k127_3343636_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005125 288.0
PJD3_k127_3343636_8 COG2030 Acyl dehydratase - - - 0.000000000000000000000000000000000000000000005102 171.0
PJD3_k127_3343636_9 Putative esterase K07017 - - 0.000000000000000000000000000005575 134.0
PJD3_k127_3374730_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 0.0 1228.0
PJD3_k127_3374730_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 349.0
PJD3_k127_3385175_0 Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties K00688 - 2.4.1.1 0.0 1112.0
PJD3_k127_3385175_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 8.948e-288 899.0
PJD3_k127_3385175_10 Glutathione S-transferase, N-terminal domain K01800,K01801 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006558,GO:0006559,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016034,GO:0016054,GO:0016853,GO:0016859,GO:0017144,GO:0019439,GO:0019752,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902221,GO:1902222 5.2.1.2,5.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000001357 253.0
PJD3_k127_3385175_11 Lrp/AsnC ligand binding domain K05800 - - 0.000000000000000000000000000000000001212 143.0
PJD3_k127_3385175_12 Sel1 domain protein repeat-containing protein K07126 - - 0.00000000000000000000000000000001182 135.0
PJD3_k127_3385175_13 Peroxisomal sarcosine oxidase K00306 GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006553,GO:0006554,GO:0006605,GO:0006625,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008115,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016054,GO:0016491,GO:0016645,GO:0016647,GO:0017144,GO:0019474,GO:0019477,GO:0019637,GO:0019693,GO:0019752,GO:0031907,GO:0031974,GO:0033036,GO:0033365,GO:0033514,GO:0033865,GO:0033875,GO:0034032,GO:0034613,GO:0034641,GO:0035383,GO:0042579,GO:0042737,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046440,GO:0046483,GO:0046907,GO:0050031,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072594,GO:0072662,GO:0072663,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.5.3.1,1.5.3.7 0.00000000000000000000000002765 116.0
PJD3_k127_3385175_2 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 6.502e-210 672.0
PJD3_k127_3385175_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 8.538e-195 617.0
PJD3_k127_3385175_4 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 1.547e-194 610.0
PJD3_k127_3385175_5 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002811 504.0
PJD3_k127_3385175_6 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 460.0
PJD3_k127_3385175_7 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008194,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033554,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0050896,GO:0051716,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003744 421.0
PJD3_k127_3385175_8 Glyoxalase K08234 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 297.0
PJD3_k127_3385175_9 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 293.0
PJD3_k127_3386689_0 in Yersinia the HmsR protein is an inner membrane protein K11936 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 546.0
PJD3_k127_3386689_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 552.0
PJD3_k127_3386689_2 Hypothetical glycosyl hydrolase family 13 K11931 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 552.0
PJD3_k127_3386689_3 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA K11935 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 419.0
PJD3_k127_3386689_4 Peptidase family S41 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004537 256.0
PJD3_k127_3404619_0 Dihydroorotate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 556.0
PJD3_k127_3404619_1 MORN repeat variant - - - 0.00000000000000000000000000000001098 134.0
PJD3_k127_3428404_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 7.562e-216 710.0
PJD3_k127_3428404_1 aminotransferase K14260 - 2.6.1.2,2.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002257 465.0
PJD3_k127_3428404_10 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000001015 103.0
PJD3_k127_3428404_11 type II secretion system protein N K02463 - - 0.000001364 57.0
PJD3_k127_3428404_12 - - - - 0.0001684 50.0
PJD3_k127_3428404_2 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 423.0
PJD3_k127_3428404_3 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009881 412.0
PJD3_k127_3428404_4 electron transfer flavoprotein beta subunit K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008625 316.0
PJD3_k127_3428404_5 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001016 282.0
PJD3_k127_3428404_6 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001764 295.0
PJD3_k127_3428404_7 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001453 276.0
PJD3_k127_3428404_8 Redoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000001111 211.0
PJD3_k127_3428404_9 2Fe-2S iron-sulfur cluster binding domain K04755 - - 0.00000000000000000000000000000000003388 142.0
PJD3_k127_3440169_0 Proton-conducting membrane transporter K05568 - - 9.134e-269 837.0
PJD3_k127_3440169_1 Bacterial protein of unknown function (DUF885) - - - 8.365e-260 812.0
PJD3_k127_3440169_10 COG2335 Secreted and surface protein containing fasciclin-like repeats - - - 0.0000000000000000000000000000000000000000000318 171.0
PJD3_k127_3440169_11 PFAM NADH-ubiquinone oxidoreductase chain 4L K05567 - - 0.0000000000000000000000000000000000000000004294 161.0
PJD3_k127_3440169_12 PFAM cation antiporter K05569 - - 0.0000000000000000000000000000000000000000009789 161.0
PJD3_k127_3440169_13 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000003024 143.0
PJD3_k127_3440169_14 Na+/H+ antiporter subunit K05571 - - 0.0000000000000000000000000000001689 127.0
PJD3_k127_3440169_15 - - - - 0.000000000000000000000000000136 117.0
PJD3_k127_3440169_16 PFAM multiple resistance and pH regulation protein F K05570 - - 0.0000000000000000000000000004881 116.0
PJD3_k127_3440169_17 - - - - 0.0000000000000000000000001172 117.0
PJD3_k127_3440169_18 DNA-binding transcription factor activity - - - 0.000000000000000000000001855 107.0
PJD3_k127_3440169_2 Protein conserved in bacteria - - - 2.234e-235 739.0
PJD3_k127_3440169_3 PFAM NADH Ubiquinone plastoquinone (complex I) K05568 - - 1.466e-231 727.0
PJD3_k127_3440169_4 COG0651 Formate hydrogenlyase subunit 3 Multisubunit Na H antiporter, MnhD subunit K05568 - - 3.389e-212 670.0
PJD3_k127_3440169_5 NADP-dependent K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007909 455.0
PJD3_k127_3440169_6 PFAM Na H antiporter MnhB subunit-related protein K05566 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009501 448.0
PJD3_k127_3440169_7 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 371.0
PJD3_k127_3440169_8 membrane-bound metal-dependent K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 342.0
PJD3_k127_3440169_9 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 313.0
PJD3_k127_3442156_0 Pro-apoptotic serine protease - - - 4.359e-240 770.0
PJD3_k127_3442156_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 2.989e-235 735.0
PJD3_k127_3442156_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 518.0
PJD3_k127_3442156_3 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009405,GO:0009605,GO:0009607,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0019725,GO:0020012,GO:0030312,GO:0030682,GO:0032843,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043207,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0051920,GO:0052060,GO:0052173,GO:0052200,GO:0052376,GO:0052551,GO:0052564,GO:0052565,GO:0052572,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071944,GO:0075136,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.000000000000000000000000000000000000000002782 161.0
PJD3_k127_3445390_0 KaiC K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 376.0
PJD3_k127_3445390_1 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008037 351.0
PJD3_k127_3445390_2 PFAM KaiB domain K08481 - - 0.0000000000000000001232 91.0
PJD3_k127_3460516_0 Elongation factor G, domain IV K02355 - - 5.701e-266 834.0
PJD3_k127_3460516_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 5.088e-260 821.0
PJD3_k127_3460516_10 Serine aminopeptidase, S33 K01048 GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0008150,GO:0008152,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0044238,GO:0044464,GO:0052689,GO:0071704,GO:0071944 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005071 273.0
PJD3_k127_3460516_11 COG2863 Cytochrome c553 - - - 0.0000000000000000000000000000000000000000000000000000000355 203.0
PJD3_k127_3460516_12 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.00000000000000000000000000000000000006361 152.0
PJD3_k127_3460516_13 PFAM Cyclic nucleotide-binding - - - 0.0000000000000000000000000000000007108 136.0
PJD3_k127_3460516_14 Bacterial transcriptional repressor - - - 0.000000000000000000000000000008438 127.0
PJD3_k127_3460516_15 PFAM poly granule associated family protein - - - 0.000000000000001323 84.0
PJD3_k127_3460516_16 CBS domain containing protein K07182 - - 0.0001499 45.0
PJD3_k127_3460516_2 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit K00316 - 1.5.99.6 2.102e-229 726.0
PJD3_k127_3460516_3 COG3420 Nitrous oxidase accessory protein - - - 1.932e-205 649.0
PJD3_k127_3460516_4 Fumarate reductase succinate dehydrogenase flavoprotein K07077 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 614.0
PJD3_k127_3460516_5 COG1858 Cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 546.0
PJD3_k127_3460516_6 COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006851 494.0
PJD3_k127_3460516_7 esterase of the alpha-beta hydrolase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 488.0
PJD3_k127_3460516_8 Imidazolonepropionase and related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001197 293.0
PJD3_k127_3460516_9 metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K07050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004602 270.0
PJD3_k127_3468414_0 COG1960 Acyl-CoA dehydrogenases K00249 - 1.3.8.7 1.405e-194 615.0
PJD3_k127_3468414_1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 295.0
PJD3_k127_3468414_2 Aldolase/RraA K10218 - 4.1.3.17 0.00000000000000000000000000000000000009115 147.0
PJD3_k127_3521094_0 Sulfotransferase domain - - - 1.038e-245 770.0
PJD3_k127_3521094_1 COG1012 NAD-dependent aldehyde dehydrogenases K09472,K12254 - 1.2.1.54,1.2.1.99 6.135e-245 764.0
PJD3_k127_3521094_10 Transcriptional regulator, AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000261 238.0
PJD3_k127_3521094_11 Ribosomal protein L11 methyltransferase (PrmA) - - - 0.0000000000000000000000000000000000000000000000000000000000001942 222.0
PJD3_k127_3521094_12 XdhC and CoxI family - - - 0.000000000000000000000000000000000000000000000000006447 196.0
PJD3_k127_3521094_13 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000001613 131.0
PJD3_k127_3521094_14 Probable molybdopterin binding domain K07141 - 2.7.7.76 0.0000000000000000000000000000003081 130.0
PJD3_k127_3521094_15 Proline racemase K01777,K12658 - 5.1.1.4,5.1.1.8 0.000000000000000003679 86.0
PJD3_k127_3521094_2 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 2.274e-235 742.0
PJD3_k127_3521094_3 COG1233 Phytoene dehydrogenase and related proteins - - - 1.224e-232 732.0
PJD3_k127_3521094_4 COG0665 Glycine D-amino acid oxidases (deaminating) K09471 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0044424,GO:0044464,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 593.0
PJD3_k127_3521094_5 GEPR COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 540.0
PJD3_k127_3521094_6 Belongs to the DapA family K21062 - 3.5.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006617 478.0
PJD3_k127_3521094_7 oxidoreductase K09471 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007086 469.0
PJD3_k127_3521094_8 COG1233 Phytoene dehydrogenase and related proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 454.0
PJD3_k127_3521094_9 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008185 379.0
PJD3_k127_354016_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004127 282.0
PJD3_k127_354016_1 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004532,GO:0004536,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008946,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0016896,GO:0019439,GO:0034611,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001731 254.0
PJD3_k127_354016_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022613,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0036094,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000002061 222.0
PJD3_k127_354016_3 Protein of unknown function (DUF938) - - - 0.000000000000000000000000000000000000000000000000000000002275 206.0
PJD3_k127_354016_4 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019478,GO:0019752,GO:0043436,GO:0043530,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046144,GO:0046395,GO:0046416,GO:0046436,GO:0055130,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 - 0.000000000000000000000000000000000000000000000005575 177.0
PJD3_k127_354016_5 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000002465 154.0
PJD3_k127_354016_6 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000005596 151.0
PJD3_k127_354016_7 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000005934 90.0
PJD3_k127_3553465_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1019.0
PJD3_k127_3553465_1 Beta-eliminating lyase K01668 - 4.1.99.2 3.057e-214 673.0
PJD3_k127_3553465_2 Protein of unknown function (DUF1538) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 328.0
PJD3_k127_3553465_3 Protein of unknown function (DUF1538) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000765 304.0
PJD3_k127_3553465_4 TonB-dependent receptor plug K02014 - - 0.000000000000000000000000000000000000000000000000000003007 208.0
PJD3_k127_3553465_5 Belongs to the P(II) protein family - - - 0.000000000000000000000000000000000000000000131 164.0
PJD3_k127_3553465_6 COG0517 FOG CBS domain - - - 0.000000000000000000000000000000000001563 142.0
PJD3_k127_3553844_0 HD domain - - - 0.0000000000000000000000000000000000000000000000001846 180.0
PJD3_k127_3553844_1 Penicillin amidase K01434 - 3.5.1.11 0.0000000000000000000000000000000000000000000000004924 181.0
PJD3_k127_3564700_0 Belongs to the Orn Lys Arg decarboxylase class-II family K00928,K12526 - 2.7.2.4,4.1.1.20 2.448e-276 872.0
PJD3_k127_3564700_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.674e-264 824.0
PJD3_k127_3564700_2 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000001023 67.0
PJD3_k127_3571544_0 Nickel-dependent hydrogenase K05922,K06281 - 1.12.5.1,1.12.99.6 5.176e-315 970.0
PJD3_k127_3571544_1 Mo-co oxidoreductase dimerisation domain - - - 5.477e-213 668.0
PJD3_k127_3571544_10 Rhodanese Homology Domain - - - 0.000000000000000000000003289 106.0
PJD3_k127_3571544_2 PFAM Cysteine-rich - - - 1.887e-202 638.0
PJD3_k127_3571544_3 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 534.0
PJD3_k127_3571544_4 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003194 516.0
PJD3_k127_3571544_5 COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III K01130 - 3.1.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000005616 271.0
PJD3_k127_3571544_6 nitrate reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006687 258.0
PJD3_k127_3571544_7 PFAM Peptidase A31, hydrogen uptake protein K03605 - - 0.0000000000000000000000000000000007705 136.0
PJD3_k127_3571544_8 PFAM HupH hydrogenase expression protein, C-terminal conserved region K03618 - - 0.000000000000000000000000000105 121.0
PJD3_k127_3571544_9 - - - - 0.0000000000000000000000000003132 119.0
PJD3_k127_3586092_0 DNA helicase K03654 - 3.6.4.12 1.266e-251 789.0
PJD3_k127_3586092_1 COG1233 Phytoene dehydrogenase and related proteins K09516,K09835 - 1.3.99.23,5.2.1.13 1.535e-249 780.0
PJD3_k127_3586092_10 TIGRFAM cytochrome c nitrate reductase, small subunit K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000008361 225.0
PJD3_k127_3586092_11 Alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000002076 220.0
PJD3_k127_3586092_12 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000005695 208.0
PJD3_k127_3586092_13 Nad-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000000000000002015 196.0
PJD3_k127_3586092_15 formamidase K01455 - 3.5.1.49 0.000000000000000000000002618 103.0
PJD3_k127_3586092_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 1.054e-229 717.0
PJD3_k127_3586092_3 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 511.0
PJD3_k127_3586092_4 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000446 271.0
PJD3_k127_3586092_5 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001426 257.0
PJD3_k127_3586092_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009292 255.0
PJD3_k127_3586092_7 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000001972 244.0
PJD3_k127_3586092_8 Efflux ABC transporter permease protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001555 242.0
PJD3_k127_3586092_9 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000002337 240.0
PJD3_k127_3589691_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1247.0
PJD3_k127_3589691_1 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766 - 1.89e-264 824.0
PJD3_k127_3589691_10 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003846 302.0
PJD3_k127_3589691_11 Belongs to the pseudouridine synthase RsuA family K06178 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003662 283.0
PJD3_k127_3589691_12 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006575 276.0
PJD3_k127_3589691_13 Belongs to the SUA5 family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001673 267.0
PJD3_k127_3589691_14 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002659 267.0
PJD3_k127_3589691_15 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0015939,GO:0015940,GO:0015949,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.000000000000000000000000000000000000000000000000000000000000000000000000005231 258.0
PJD3_k127_3589691_16 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000003229 235.0
PJD3_k127_3589691_17 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.0000000000000000000000000000000000000000000000000000000005732 209.0
PJD3_k127_3589691_18 peptidylprolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000009947 175.0
PJD3_k127_3589691_19 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.0000000000000000000000000000000000000000002413 160.0
PJD3_k127_3589691_2 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 496.0
PJD3_k127_3589691_20 YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the K09780 - - 0.00000000000000000000000000000000000000002556 154.0
PJD3_k127_3589691_21 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000004676 135.0
PJD3_k127_3589691_22 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000000000000001181 117.0
PJD3_k127_3589691_23 COG1555 DNA uptake protein and related DNA-binding proteins K02237 GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 - 0.0000000000000000832 83.0
PJD3_k127_3589691_24 Lipopolysaccharide assembly protein A domain K08992 - - 0.0004646 47.0
PJD3_k127_3589691_3 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007566 495.0
PJD3_k127_3589691_4 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004313 486.0
PJD3_k127_3589691_5 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0006520,GO:0006553,GO:0006563,GO:0006564,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009089,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019752,GO:0019842,GO:0030170,GO:0033359,GO:0034641,GO:0036094,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0046394,GO:0046451,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901615,GO:1901617 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 469.0
PJD3_k127_3589691_6 Prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004615 437.0
PJD3_k127_3589691_7 DNA recombination protein RmuC K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 409.0
PJD3_k127_3589691_8 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 338.0
PJD3_k127_3589691_9 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008289,GO:0008689,GO:0008757,GO:0009058,GO:0009108,GO:0009628,GO:0009651,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0042538,GO:0043167,GO:0043168,GO:0043431,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0061542,GO:0071704,GO:1901576,GO:1901611,GO:1901661,GO:1901663 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006836 331.0
PJD3_k127_362728_0 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000002756 196.0
PJD3_k127_362728_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000007572 148.0
PJD3_k127_3700785_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 9.864e-217 682.0
PJD3_k127_3700785_1 COG1960 Acyl-CoA dehydrogenases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 499.0
PJD3_k127_3700785_10 ThiS family K03636 - - 0.00000000000009831 74.0
PJD3_k127_3700785_11 Phospholipase_D-nuclease N-terminal - - - 0.00000000001201 67.0
PJD3_k127_3700785_12 - - - - 0.00000000001523 70.0
PJD3_k127_3700785_13 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000176 44.0
PJD3_k127_3700785_2 nitrilase K01501 - 3.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008467 436.0
PJD3_k127_3700785_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 408.0
PJD3_k127_3700785_4 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006925 361.0
PJD3_k127_3700785_5 MoaC family K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000003276 203.0
PJD3_k127_3700785_6 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase - - - 0.00000000000000000000000000000000000000000000000000002945 191.0
PJD3_k127_3700785_7 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000004054 173.0
PJD3_k127_3700785_8 dehydratase - - - 0.000000000000000000000000000000000000000007489 158.0
PJD3_k127_3700785_9 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.0000000000000001567 81.0
PJD3_k127_3719714_0 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000002051 203.0
PJD3_k127_3719714_1 Adenylate cyclase - - - 0.00000000000000000000000000000001478 144.0
PJD3_k127_3730174_0 Prokaryotic cytochrome b561 - - - 0.0 1047.0
PJD3_k127_3730174_1 PFAM Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 596.0
PJD3_k127_3730174_2 Prokaryotic cytochrome b561 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 557.0
PJD3_k127_3730174_3 NapC/NirT cytochrome c family, N-terminal region - GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004269 488.0
PJD3_k127_3730174_4 PFAM Cytochrome C K17230 - - 0.000000000000000000000000000000000000000003959 163.0
PJD3_k127_3730174_5 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00246 - - 0.00000000000000000000000003009 118.0
PJD3_k127_3730174_6 light absorption K06893 - - 0.0000000000000000000002788 100.0
PJD3_k127_3730174_7 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000004903 67.0
PJD3_k127_374168_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit K00316 - 1.5.99.6 6.033e-202 640.0
PJD3_k127_374168_1 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000003285 181.0
PJD3_k127_374168_2 Inner membrane component domain - - - 0.0000000000000000000000000000004367 136.0
PJD3_k127_3955990_0 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004858 389.0
PJD3_k127_3955990_1 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 382.0
PJD3_k127_3955990_2 PFAM Na Pi-cotransporter K03324 - - 0.0000000000000000000000000000000000000000000003305 180.0
PJD3_k127_3955990_3 Response regulator receiver domain - - - 0.0000000000000000000000000000006882 125.0
PJD3_k127_3955990_4 STAS domain - - - 0.000000000000000000000000000001773 126.0
PJD3_k127_3955990_5 Histidine kinase K02030 - - 0.000000000000000000000000002994 119.0
PJD3_k127_3970736_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 1.079e-212 677.0
PJD3_k127_3970736_1 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004773 591.0
PJD3_k127_3970736_2 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008204 269.0
PJD3_k127_3970736_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.000000000000000000000000000000000000000000000000000000002738 205.0
PJD3_k127_3993516_0 Tfp pilus assembly protein tip-associated adhesin K02674 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 546.0
PJD3_k127_3993516_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 GO:0000270,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0010876,GO:0015647,GO:0015648,GO:0015835,GO:0015836,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0030203,GO:0031224,GO:0031226,GO:0033036,GO:0034203,GO:0034204,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0070589,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 494.0
PJD3_k127_3993516_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000002098 132.0
PJD3_k127_3993516_11 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000000000000000001725 115.0
PJD3_k127_3993516_12 TIGRFAM conserved repeat domain - - - 0.0000000000000000000000001932 113.0
PJD3_k127_3993516_13 Type IV minor pilin ComP, DNA uptake sequence receptor K02655 - - 0.0000000000000000000002154 102.0
PJD3_k127_3993516_14 - - - - 0.0000000000000000000005613 102.0
PJD3_k127_3993516_15 type 4 fimbrial biogenesis K02672 - - 0.0000000000000000001112 100.0
PJD3_k127_3993516_16 - - - - 0.000000000197 61.0
PJD3_k127_3993516_17 COG4967 Tfp pilus assembly protein PilV - - - 0.0000000003503 66.0
PJD3_k127_3993516_18 PilX N-terminal K02673 - - 0.0005153 50.0
PJD3_k127_3993516_2 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 459.0
PJD3_k127_3993516_3 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 389.0
PJD3_k127_3993516_4 Berberine and berberine like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 359.0
PJD3_k127_3993516_5 COG0436 Aspartate tyrosine aromatic aminotransferase K14287 - 2.6.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 308.0
PJD3_k127_3993516_6 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000312 283.0
PJD3_k127_3993516_7 COGs COG0508 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein K00627 - 2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000003654 229.0
PJD3_k127_3993516_8 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000006978 165.0
PJD3_k127_3993516_9 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000001675 145.0
PJD3_k127_4010443_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1139.0
PJD3_k127_4010443_1 WD40-like Beta Propeller Repeat - - - 2.346e-252 805.0
PJD3_k127_4010443_10 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004663 407.0
PJD3_k127_4010443_11 Predicted membrane protein (DUF2207) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 409.0
PJD3_k127_4010443_12 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006035 399.0
PJD3_k127_4010443_13 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006506 395.0
PJD3_k127_4010443_14 Belongs to the peptidase S1C family K04771,K04772 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006813 381.0
PJD3_k127_4010443_15 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 357.0
PJD3_k127_4010443_16 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004778 349.0
PJD3_k127_4010443_17 PFAM Lytic K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001585 358.0
PJD3_k127_4010443_18 type I secretion outer membrane protein, TolC K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006388 320.0
PJD3_k127_4010443_19 TSCPD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 305.0
PJD3_k127_4010443_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 1.708e-242 762.0
PJD3_k127_4010443_20 Putative aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001063 287.0
PJD3_k127_4010443_21 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007343 277.0
PJD3_k127_4010443_22 allophanate hydrolase subunit 2 K01457 - 3.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000005207 271.0
PJD3_k127_4010443_23 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000003526 254.0
PJD3_k127_4010443_24 Eukaryotic integral membrane protein (DUF1751) - - - 0.0000000000000000000000000000000000000000000000000000000000000000627 228.0
PJD3_k127_4010443_25 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000001447 214.0
PJD3_k127_4010443_26 protein-L-isoaspartate O-methyltransferase K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000003346 212.0
PJD3_k127_4010443_27 lysine exporter protein (LysE YggA) - - - 0.000000000000000000000000000000000000000000000000000000005877 207.0
PJD3_k127_4010443_28 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000978 206.0
PJD3_k127_4010443_29 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000007276 183.0
PJD3_k127_4010443_3 modulator of DNA gyrase K03568 - - 9.16e-208 658.0
PJD3_k127_4010443_30 Allophanate hydrolase, subunit 1 K01457,K06351 - 3.5.1.54 0.0000000000000000000000000000000000000000000000001478 183.0
PJD3_k127_4010443_31 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000000009635 168.0
PJD3_k127_4010443_32 LemA family K03744 - - 0.000000000000000000000000000000000000000000001385 171.0
PJD3_k127_4010443_33 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.000000000000000000000000000000000000000007817 158.0
PJD3_k127_4010443_34 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.00000000000000000000000000000000000000001488 157.0
PJD3_k127_4010443_35 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000002046 136.0
PJD3_k127_4010443_36 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.000000000000000000000000212 106.0
PJD3_k127_4010443_37 Amidohydrolase family - - - 0.00006735 46.0
PJD3_k127_4010443_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 2.512e-203 643.0
PJD3_k127_4010443_5 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 557.0
PJD3_k127_4010443_6 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 546.0
PJD3_k127_4010443_7 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate K00974 GO:0003674,GO:0003824,GO:0004652,GO:0004810,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0070566,GO:0071704,GO:0090304,GO:1901360,GO:1990817 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 503.0
PJD3_k127_4010443_8 beta-keto acid cleavage enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001385 446.0
PJD3_k127_4010443_9 including yeast histone deacetylase and acetoin utilization protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 439.0
PJD3_k127_4029724_0 Peptidase M16 - - - 7.712e-200 642.0
PJD3_k127_4029724_1 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191 441.0
PJD3_k127_4037209_0 COG2366 Protein related to penicillin acylase K01434,K07116 - 3.5.1.11,3.5.1.97 2.889e-214 693.0
PJD3_k127_4037209_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000333 564.0
PJD3_k127_4037209_10 COG1762 Phosphotransferase system mannitol fructose-specific IIA domain (Ntr-type) K02806 GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004857,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0008047,GO:0008150,GO:0008643,GO:0009401,GO:0009893,GO:0010033,GO:0010243,GO:0010562,GO:0010604,GO:0015144,GO:0016020,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019887,GO:0022804,GO:0022857,GO:0022898,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032409,GO:0032412,GO:0032879,GO:0033674,GO:0034219,GO:0034762,GO:0034765,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043086,GO:0043269,GO:0043549,GO:0044092,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0055085,GO:0060255,GO:0065007,GO:0065009,GO:0071702,GO:0071944,GO:0080090,GO:0090563,GO:0098772,GO:1901698 - 0.000000000000000000000000000002724 126.0
PJD3_k127_4037209_11 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000002966 78.0
PJD3_k127_4037209_2 protein conserved in bacteria K09989 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 558.0
PJD3_k127_4037209_3 AAA domain (Cdc48 subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005692 466.0
PJD3_k127_4037209_4 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001437 469.0
PJD3_k127_4037209_5 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 365.0
PJD3_k127_4037209_6 Displays ATPase and GTPase activities K06958 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 290.0
PJD3_k127_4037209_7 Bacterial protein of unknown function (DUF839) K07093 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000737 266.0
PJD3_k127_4037209_8 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000003503 184.0
PJD3_k127_4037209_9 Sigma 54 modulation protein K05808 - - 0.000000000000000000000000000000008655 131.0
PJD3_k127_4039851_0 domain, Protein - - - 0.000000000000000007376 98.0
PJD3_k127_4039851_1 Protein of unknown function (DUF3592) - - - 0.00000000000001031 82.0
PJD3_k127_4039851_2 - - - - 0.00000072 56.0
PJD3_k127_4045011_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.716e-290 907.0
PJD3_k127_4045011_1 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 9.877e-237 745.0
PJD3_k127_4045011_10 FAD dependent oxidoreductase K06954 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 506.0
PJD3_k127_4045011_11 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009735 506.0
PJD3_k127_4045011_12 Putative methyltransferase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 434.0
PJD3_k127_4045011_13 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 312.0
PJD3_k127_4045011_14 Protein of unknown function (DUF1365) K00574,K09701 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 293.0
PJD3_k127_4045011_15 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000001094 255.0
PJD3_k127_4045011_16 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 GO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0033890,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360 3.1.13.5 0.000000000000000000000000000000000000000000000000000000000000000000000001471 258.0
PJD3_k127_4045011_17 Outer Membrane Lipoprotein K03098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004002 248.0
PJD3_k127_4045011_18 Bacterial protein of unknown function (DUF839) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008216 236.0
PJD3_k127_4045011_19 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000001046 241.0
PJD3_k127_4045011_2 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 1.597e-235 734.0
PJD3_k127_4045011_20 Two component transcriptional regulator K11329 - - 0.00000000000000000000000000000000000000000000000000000000000000003214 231.0
PJD3_k127_4045011_21 Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes K03651 GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005488,GO:0005506,GO:0008081,GO:0008150,GO:0008198,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0042545,GO:0042578,GO:0043167,GO:0043169,GO:0045229,GO:0046872,GO:0046914,GO:0071554,GO:0071555,GO:0071840 3.1.4.53 0.00000000000000000000000000000000000000000000000000000000000002181 224.0
PJD3_k127_4045011_22 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.00000000000000000000000000000000000000000000000003658 186.0
PJD3_k127_4045011_23 TraB family K09973 - - 0.0000000000000000000000000000000000000000000000001413 188.0
PJD3_k127_4045011_24 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000002142 182.0
PJD3_k127_4045011_25 Protein of unknown function (DUF2878) - - - 0.0000000000000000000000000000000000000006062 159.0
PJD3_k127_4045011_3 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 1.154e-201 635.0
PJD3_k127_4045011_4 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 610.0
PJD3_k127_4045011_5 Aminotransferase K01845 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016853,GO:0016866,GO:0016869,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042286,GO:0042440,GO:0042802,GO:0044237,GO:0044249,GO:0044271,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 591.0
PJD3_k127_4045011_6 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 549.0
PJD3_k127_4045011_7 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006285 532.0
PJD3_k127_4045011_8 Cyclopropane-fatty-acyl-phospholipid synthase K00574 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008168,GO:0008610,GO:0008757,GO:0009058,GO:0009059,GO:0009273,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019752,GO:0030312,GO:0032259,GO:0032787,GO:0034645,GO:0042546,GO:0043170,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070589,GO:0071554,GO:0071704,GO:0071766,GO:0071767,GO:0071768,GO:0071840,GO:0071944,GO:0072330,GO:1901576 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 535.0
PJD3_k127_4045011_9 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007893 509.0
PJD3_k127_4045422_0 Domain of unknown function (DUF4336) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006252 336.0
PJD3_k127_4045422_1 haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 329.0
PJD3_k127_4045422_2 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006518 269.0
PJD3_k127_4045422_3 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002481 254.0
PJD3_k127_4045422_4 Molydopterin dinucleotide binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000008031 243.0
PJD3_k127_4045422_5 Prolyl 4-hydroxylase alpha subunit homologues. K00472 - 1.14.11.2 0.00000000000000000000000000000000000000000000000000000000001353 212.0
PJD3_k127_4045422_6 - - - - 0.00000000000000000000000000000000000001067 153.0
PJD3_k127_4045422_7 - - - - 0.00000000000000000000000000378 123.0
PJD3_k127_4051245_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 2.036e-208 654.0
PJD3_k127_4051245_1 Radical SAM superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002202 590.0
PJD3_k127_4051245_10 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000000000000000005106 161.0
PJD3_k127_4051245_11 MerR HTH family regulatory protein K18997 - - 0.00000000000000000000006937 102.0
PJD3_k127_4051245_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009468 566.0
PJD3_k127_4051245_3 molecular chaperone K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 421.0
PJD3_k127_4051245_4 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003334 371.0
PJD3_k127_4051245_5 Belongs to the MEMO1 family K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000268 279.0
PJD3_k127_4051245_6 COGs COG4665 TRAP-type mannitol chloroaromatic compound transport system small permease component - - - 0.000000000000000000000000000000000000000000000000000000000000000000005374 239.0
PJD3_k127_4051245_7 aminotransferase K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000002795 209.0
PJD3_k127_4051245_8 pfam ammecr1 - - - 0.0000000000000000000000000000000000000000000000000002324 193.0
PJD3_k127_4051245_9 rhodanese-related sulfurtransferase - - - 0.00000000000000000000000000000000000000000000001226 174.0
PJD3_k127_4053547_0 Patatin-like phospholipase K06900 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 499.0
PJD3_k127_4053547_1 COG0577 ABC-type antimicrobial peptide transport system permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009953 489.0
PJD3_k127_4053547_2 Membrane dipeptidase (Peptidase family M19) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 453.0
PJD3_k127_4053547_3 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004943 433.0
PJD3_k127_4053547_4 HlyD family secretion protein K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001929 287.0
PJD3_k127_4053547_5 NAD dependent epimerase/dehydratase family K05281 - 1.3.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001505 281.0
PJD3_k127_4053547_6 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit K00316 - 1.5.99.6 0.000000000000000000000000000000000000000000000000000000000000000000005136 237.0
PJD3_k127_4053547_7 Belongs to the UPF0178 family K09768 - - 0.000000000000000000000000000000000000000000000000000000000000007207 219.0
PJD3_k127_4053547_8 PAP2 superfamily - - - 0.00000000000000000000000000000000000000000000114 180.0
PJD3_k127_4088474_0 Penicillin amidase K01434 - 3.5.1.11 4.446e-222 704.0
PJD3_k127_4088474_1 NAD+ binding - - - 0.00000000000000000000000000000000000002146 152.0
PJD3_k127_4088474_3 cAMP biosynthetic process - - - 0.000005121 49.0
PJD3_k127_4117116_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 1.422e-205 647.0
PJD3_k127_4117116_1 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 619.0
PJD3_k127_4117116_10 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001863 269.0
PJD3_k127_4117116_11 catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000004284 261.0
PJD3_k127_4117116_12 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000004731 243.0
PJD3_k127_4117116_13 MFS_1 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006313 252.0
PJD3_k127_4117116_14 Belongs to the UPF0758 family K03630 GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000000000000000000000000000000000000000007702 216.0
PJD3_k127_4117116_15 Acyltransferase - - - 0.000000000000000000000000000000000000000000000000768 180.0
PJD3_k127_4117116_16 Protein of unknown function, DUF484 K09921 - - 0.00000000000000000000000000000000000000000008462 168.0
PJD3_k127_4117116_17 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001123 130.0
PJD3_k127_4117116_18 Sterol-binding domain protein K03690 - - 0.0000000000000000000000000000002769 131.0
PJD3_k127_4117116_19 COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - - - 0.00000000000000000000009189 102.0
PJD3_k127_4117116_2 Acetyl-coenzyme A transporter 1 K08218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 578.0
PJD3_k127_4117116_20 Domain of unknown function (DUF4124) - - - 0.000000000000000000002899 102.0
PJD3_k127_4117116_21 Belongs to the bacterial ribosomal protein bL33 family K02913 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000001667 92.0
PJD3_k127_4117116_22 - - - - 0.00000000007081 71.0
PJD3_k127_4117116_3 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 519.0
PJD3_k127_4117116_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008252 450.0
PJD3_k127_4117116_5 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002363 391.0
PJD3_k127_4117116_6 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 GO:0003674,GO:0003824,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008425,GO:0008757,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016740,GO:0016741,GO:0030580,GO:0032259,GO:0042180,GO:0042181,GO:0043333,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 342.0
PJD3_k127_4117116_7 Belongs to the 'phage' integrase family. XerC subfamily K03733 GO:0000150,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006276,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008907,GO:0009009,GO:0009037,GO:0009987,GO:0015074,GO:0032991,GO:0034641,GO:0042150,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0071139,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 340.0
PJD3_k127_4117116_8 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 288.0
PJD3_k127_4117116_9 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 GO:0000287,GO:0003674,GO:0003824,GO:0004588,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 286.0
PJD3_k127_4131937_0 COG0474 Cation transport ATPase K01537 - 3.6.3.8 2.652e-303 954.0
PJD3_k127_4131937_1 P-type ATPase K17686 - 3.6.3.54 4.263e-276 867.0
PJD3_k127_4131937_10 thiolester hydrolase activity K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001717 271.0
PJD3_k127_4131937_11 - - - - 0.000000000000000000000000000000000000000000000000001037 196.0
PJD3_k127_4131937_12 peptidase activity - - - 0.00000000000000000000000000000000000000000000000192 181.0
PJD3_k127_4131937_13 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000000005329 167.0
PJD3_k127_4131937_14 protein conserved in bacteria K09790 - - 0.00000000000000000000000000000000007983 136.0
PJD3_k127_4131937_15 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000005109 121.0
PJD3_k127_4131937_16 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000001503 118.0
PJD3_k127_4131937_17 Putative zinc-finger - - - 0.00000000000000000000000000191 116.0
PJD3_k127_4131937_18 - - - - 0.0000000000123 68.0
PJD3_k127_4131937_2 Cys/Met metabolism PLP-dependent enzyme K01761 GO:0000096,GO:0000097,GO:0000098,GO:0001101,GO:0003674,GO:0003824,GO:0003962,GO:0004123,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0007154,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009067,GO:0009068,GO:0009069,GO:0009070,GO:0009086,GO:0009087,GO:0009092,GO:0009267,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009970,GO:0009987,GO:0009991,GO:0010035,GO:0016043,GO:0016053,GO:0016054,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0017144,GO:0018826,GO:0019343,GO:0019344,GO:0019346,GO:0019458,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0036094,GO:0042221,GO:0042594,GO:0042631,GO:0043167,GO:0043168,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0048037,GO:0050662,GO:0050667,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0065003,GO:0070279,GO:0070887,GO:0071214,GO:0071229,GO:0071265,GO:0071266,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901700,GO:1901701 4.4.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 504.0
PJD3_k127_4131937_3 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006539 500.0
PJD3_k127_4131937_4 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008134 470.0
PJD3_k127_4131937_5 AAA domain K07028 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 396.0
PJD3_k127_4131937_6 Glutamine amidotransferases class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 301.0
PJD3_k127_4131937_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 293.0
PJD3_k127_4131937_8 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002513 286.0
PJD3_k127_4131937_9 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003629 266.0
PJD3_k127_4137331_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 572.0
PJD3_k127_4137331_1 Regulatory protein recX K03565 GO:0003674,GO:0005488,GO:0005515,GO:0006282,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0031323,GO:0031668,GO:0033554,GO:0043086,GO:0044092,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071496,GO:0080090,GO:0080134,GO:0080135,GO:0098772,GO:2001020 - 0.00000000000000000000000000000000001457 141.0
PJD3_k127_4138153_0 aminopeptidase K01256,K01263 - 3.4.11.14,3.4.11.2 7.341e-241 771.0
PJD3_k127_4138153_1 CoA binding domain K09181 - - 4.886e-199 634.0
PJD3_k127_4138153_2 histone deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005143 355.0
PJD3_k127_4138153_3 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000283 118.0
PJD3_k127_4142750_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 5e-324 1003.0
PJD3_k127_4142750_1 COG0436 Aspartate tyrosine aromatic aminotransferase K00812,K12252 - 2.6.1.1,2.6.1.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000973 501.0
PJD3_k127_4142750_10 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000002679 85.0
PJD3_k127_4142750_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 475.0
PJD3_k127_4142750_3 peptidase dimerisation domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 478.0
PJD3_k127_4142750_4 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 450.0
PJD3_k127_4142750_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000004652 226.0
PJD3_k127_4142750_6 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000001436 198.0
PJD3_k127_4142750_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000002613 175.0
PJD3_k127_4142750_8 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000001586 148.0
PJD3_k127_4142750_9 - - - - 0.00000000000000000000000000000000008583 141.0
PJD3_k127_4147988_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 1.697e-302 944.0
PJD3_k127_4147988_1 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 1.034e-212 685.0
PJD3_k127_4147988_10 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.00000000000000000000000000000000131 132.0
PJD3_k127_4147988_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000002968 130.0
PJD3_k127_4147988_12 signal sequence binding - - - 0.000000000000000000000001346 113.0
PJD3_k127_4147988_13 Putative zinc-finger - - - 0.0000000000000000007128 94.0
PJD3_k127_4147988_14 COG0457 FOG TPR repeat - - - 0.000000003871 69.0
PJD3_k127_4147988_15 Protein of unknown function (DUF2909) - - - 0.000004839 50.0
PJD3_k127_4147988_2 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 6.032e-200 632.0
PJD3_k127_4147988_3 TrkA-N domain K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 593.0
PJD3_k127_4147988_4 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002662 367.0
PJD3_k127_4147988_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007913 368.0
PJD3_k127_4147988_6 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 322.0
PJD3_k127_4147988_7 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000002865 202.0
PJD3_k127_4147988_8 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.0000000000000000000000000000000000007427 146.0
PJD3_k127_4147988_9 SURF1-like protein K14998 - - 0.0000000000000000000000000000000002264 141.0
PJD3_k127_4150034_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1028.0
PJD3_k127_4150034_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000002955 112.0
PJD3_k127_4157079_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 403.0
PJD3_k127_4157079_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000000000000000000000000000000000000000001528 207.0
PJD3_k127_4157079_2 biopolymer transport protein K03559 - - 0.000000000000000000000000000000000000000000002876 167.0
PJD3_k127_4157079_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000866 163.0
PJD3_k127_4157079_4 biopolymer transport protein K03559 - - 0.0000000000000000000000000000000000000000426 155.0
PJD3_k127_4157079_5 Protein of unknown function (DUF3450) - - - 0.000000000000000001035 88.0
PJD3_k127_4166607_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 3.472e-224 713.0
PJD3_k127_4166607_1 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005225 561.0
PJD3_k127_4166607_10 RNA-binding protein - - - 0.000002709 52.0
PJD3_k127_4166607_2 Alanine racemase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007807 436.0
PJD3_k127_4166607_3 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 346.0
PJD3_k127_4166607_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000007058 220.0
PJD3_k127_4166607_5 COG1309 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000005688 203.0
PJD3_k127_4166607_6 PFAM Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000001617 204.0
PJD3_k127_4166607_7 enzyme of the cupin superfamily - - - 0.000000000000000000000008842 104.0
PJD3_k127_4166607_8 Bacterial regulatory proteins, tetR family K21961 - - 0.000000000000005819 81.0
PJD3_k127_4185192_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1351.0
PJD3_k127_4185192_1 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000000000002869 223.0
PJD3_k127_4185192_2 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.00000000000000000000000000000000000000000000000000000000001993 214.0
PJD3_k127_4185192_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000002573 191.0
PJD3_k127_4185192_4 Putative regulatory protein - - - 0.0000000000000000000000001448 109.0
PJD3_k127_4187004_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 616.0
PJD3_k127_4187004_1 N-formylglutamate amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000003012 233.0
PJD3_k127_4187004_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000008183 229.0
PJD3_k127_4255591_0 HypF finger - - - 3.205e-256 812.0
PJD3_k127_4255591_1 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 1.346e-246 766.0
PJD3_k127_4255591_10 Bacterial regulatory helix-turn-helix protein, lysR family K21703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 320.0
PJD3_k127_4255591_11 cytochrome C family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000005429 238.0
PJD3_k127_4255591_12 Flavin reductase like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000008018 228.0
PJD3_k127_4255591_13 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 K03775 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000005425 218.0
PJD3_k127_4255591_14 peptidase - - - 0.0000000000000000000000000000000000000000000000000004388 188.0
PJD3_k127_4255591_15 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00000000000000000000000000000000000001151 147.0
PJD3_k127_4255591_16 HAD-hyrolase-like K01091 - 3.1.3.18 0.000000000000000000000000000000000001477 148.0
PJD3_k127_4255591_17 hydrogenase expression formation protein K04653 - - 0.0000000000000000000000003907 106.0
PJD3_k127_4255591_2 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 595.0
PJD3_k127_4255591_3 Hydrogenase formation hypA family K04654 GO:0003674,GO:0005488,GO:0005506,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0019538,GO:0036211,GO:0042165,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0051604,GO:0070025,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 593.0
PJD3_k127_4255591_4 AIR synthase related protein, N-terminal domain K04655 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0018193,GO:0018198,GO:0018249,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046892,GO:0051604,GO:0071704,GO:1901564 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 471.0
PJD3_k127_4255591_5 PFAM Phosphoribulokinase uridine kinase K00855 - 2.7.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006224 403.0
PJD3_k127_4255591_6 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 388.0
PJD3_k127_4255591_7 TIGRFAM Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 371.0
PJD3_k127_4255591_8 Putative outer membrane beta-barrel porin, MtrB/PioB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004316 370.0
PJD3_k127_4255591_9 COGs COG3367 conserved K16149 - 2.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 346.0
PJD3_k127_430650_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 470.0
PJD3_k127_430650_1 Could accelerate the degradation of some genes transcripts potentially through selective RNA binding K03563 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005979,GO:0006109,GO:0006139,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010675,GO:0010677,GO:0010906,GO:0010962,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032881,GO:0032885,GO:0034248,GO:0034249,GO:0034641,GO:0043170,GO:0043255,GO:0043467,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045719,GO:0045912,GO:0045947,GO:0046483,GO:0048027,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0065007,GO:0070873,GO:0070874,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:2000112,GO:2000113 - 0.000000000000000000000001625 103.0
PJD3_k127_4312676_0 Peptidase, M16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 441.0
PJD3_k127_4312676_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000005376 74.0
PJD3_k127_4316744_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 2.789e-210 668.0
PJD3_k127_4316744_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 578.0
PJD3_k127_4316744_10 FecR protein - - - 0.00002208 56.0
PJD3_k127_4316744_2 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000575 537.0
PJD3_k127_4316744_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002409 489.0
PJD3_k127_4316744_4 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005648 436.0
PJD3_k127_4316744_5 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 346.0
PJD3_k127_4316744_6 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 355.0
PJD3_k127_4316744_7 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000002308 172.0
PJD3_k127_4316744_8 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000001539 149.0
PJD3_k127_4316744_9 DNA-templated transcription, initiation K03088,K03091 - - 0.0000000000000000000000000000004447 130.0
PJD3_k127_4323294_0 Pfam Sulfatase K01130 - 3.1.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000437 537.0
PJD3_k127_4323294_1 - - - - 0.0000000000000000000000000000000000000000007241 161.0
PJD3_k127_4323294_2 Protein of unknown function (DUF1254) - - - 0.0000000000000000000000000000000000002311 154.0
PJD3_k127_4372335_0 COG2366 Protein related to penicillin acylase K07116 - 3.5.1.97 4.297e-266 838.0
PJD3_k127_4372335_1 Belongs to the glycosyl hydrolase 3 family K01207,K05349 - 3.2.1.21,3.2.1.52 6.034e-235 751.0
PJD3_k127_4372335_2 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000487 323.0
PJD3_k127_4372335_3 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003402 251.0
PJD3_k127_4372335_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000124 204.0
PJD3_k127_43781_0 COG0402 Cytosine deaminase and related metal-dependent hydrolases K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006173 520.0
PJD3_k127_43781_1 Polysaccharide deacetylase K01452 - 3.5.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 504.0
PJD3_k127_43781_10 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000002932 169.0
PJD3_k127_43781_11 redox protein, regulator of disulfide bond formation - - - 0.0000000000000000000000000000000000000006855 155.0
PJD3_k127_43781_12 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000007048 169.0
PJD3_k127_43781_13 Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source K01483 - 4.3.2.3 0.000000000000000000000000000000000000001524 153.0
PJD3_k127_43781_14 Putative DNA-binding domain - - - 0.0000000000000000000000000006422 127.0
PJD3_k127_43781_15 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000006971 97.0
PJD3_k127_43781_2 Belongs to the allantoicase family K01477 - 3.5.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 409.0
PJD3_k127_43781_3 PFAM MOFRL domain protein K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 386.0
PJD3_k127_43781_4 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009942 290.0
PJD3_k127_43781_5 Urate oxidase N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005164 248.0
PJD3_k127_43781_6 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000009014 243.0
PJD3_k127_43781_7 Phosphoribosyl transferase domain K07101 - - 0.000000000000000000000000000000000000000000000000000000000000000000007166 241.0
PJD3_k127_43781_8 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000000000000000000000000002316 220.0
PJD3_k127_43781_9 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000001992 199.0
PJD3_k127_4433976_0 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 557.0
PJD3_k127_4433976_1 cAMP biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009199 415.0
PJD3_k127_4442721_0 helix_turn_helix, cAMP Regulatory protein K01420 - - 0.00000000000000000000000000000000005125 143.0
PJD3_k127_4442721_1 Uncharacterized ACR, COG1678 - - - 0.0000000000468 64.0
PJD3_k127_4442721_2 COG1520 FOG WD40-like repeat - - - 0.000000000836 72.0
PJD3_k127_4462983_0 COG1335 Amidases related to nicotinamidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009003 340.0
PJD3_k127_4462983_1 isomerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 311.0
PJD3_k127_4462983_2 pyridine nucleotide-disulfide oxidoreductase K03885 - 1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001387 274.0
PJD3_k127_4462983_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000001882 246.0
PJD3_k127_4462983_4 Cupin - - - 0.000000000000000000000000000000000000000000008057 174.0
PJD3_k127_4462983_5 Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family K00569 - 2.1.1.67 0.0000000000000000000000000000000000000003242 160.0
PJD3_k127_4462983_6 Protein conserved in bacteria - - - 0.000002322 53.0
PJD3_k127_4462983_7 - - - - 0.0004452 51.0
PJD3_k127_4466935_0 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 2.953e-205 652.0
PJD3_k127_4466935_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 8.772e-204 645.0
PJD3_k127_4466935_10 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000004624 249.0
PJD3_k127_4466935_11 uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000007872 243.0
PJD3_k127_4466935_12 COG0252 L-asparaginase archaeal Glu-tRNAGln amidotransferase subunit D K01424 - 3.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000002723 229.0
PJD3_k127_4466935_13 A domain family that is part of the cupin metalloenzyme superfamily. K18850 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009987,GO:0016491,GO:0016705,GO:0016706,GO:0018193,GO:0018195,GO:0019538,GO:0030961,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:1901564 1.14.11.47 0.0000000000000000000000000000000000000000000000000000000000000004114 234.0
PJD3_k127_4466935_14 DNA mismatch repair protein MutT - - - 0.0000000000000000000000000000000000000001336 158.0
PJD3_k127_4466935_15 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.00000000000000000000000000000004296 132.0
PJD3_k127_4466935_16 17 kDa surface antigen - - - 0.0000000000000000000000000000003572 130.0
PJD3_k127_4466935_17 protein acetylation - - - 0.0000000000000000000000268 105.0
PJD3_k127_4466935_18 Protein of unknown function (DUF3185) - - - 0.00000000000008267 75.0
PJD3_k127_4466935_19 - - - - 0.0000000000007043 73.0
PJD3_k127_4466935_2 Isocitrate K00031 GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114 1.1.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002821 620.0
PJD3_k127_4466935_3 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 610.0
PJD3_k127_4466935_4 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 597.0
PJD3_k127_4466935_5 Membrane-bound serine protease (ClpP class) K07403 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 407.0
PJD3_k127_4466935_6 PFAM Band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 337.0
PJD3_k127_4466935_7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008295 316.0
PJD3_k127_4466935_8 Histidine kinase K07637 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 316.0
PJD3_k127_4466935_9 MazG nucleotide pyrophosphohydrolase domain K04765 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006213,GO:0006220,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009164,GO:0009166,GO:0009199,GO:0009200,GO:0009203,GO:0009204,GO:0009208,GO:0009210,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009218,GO:0009219,GO:0009222,GO:0009223,GO:0009259,GO:0009261,GO:0009262,GO:0009264,GO:0009267,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019693,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042454,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046046,GO:0046047,GO:0046051,GO:0046052,GO:0046060,GO:0046061,GO:0046070,GO:0046075,GO:0046076,GO:0046080,GO:0046081,GO:0046131,GO:0046133,GO:0046135,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0050896,GO:0051716,GO:0055086,GO:0071496,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658 3.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 290.0
PJD3_k127_4474313_0 Protein of unknown function (DUF1329) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 514.0
PJD3_k127_4474313_1 protein related to plant photosystem II stability assembly factor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004116 299.0
PJD3_k127_4474313_2 of the RND superfamily K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000099 253.0
PJD3_k127_4502679_0 glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1364.0
PJD3_k127_4502679_1 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K20034 - 6.2.1.44 3.752e-237 744.0
PJD3_k127_4502679_2 Acyl-CoA thioesterase K10805 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 356.0
PJD3_k127_4502679_3 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 348.0
PJD3_k127_4502679_4 Tryptophan 2,3-dioxygenase K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 336.0
PJD3_k127_4502679_5 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000123 257.0
PJD3_k127_4502679_6 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000001939 230.0
PJD3_k127_4502679_7 MarR family transcriptional regulator - - - 0.000000000000000000000000000000000000000001803 160.0
PJD3_k127_4502679_8 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00019,K18335 - 1.1.1.30 0.000000000000000000000000000000000000005094 155.0
PJD3_k127_4502679_9 Reduces the stability of FtsZ polymers in the presence of ATP K06916 - - 0.000000000000000000001026 95.0
PJD3_k127_4545957_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0 1175.0
PJD3_k127_4545957_1 Dehydrogenase E1 component K00164 GO:0003674,GO:0003824,GO:0004591,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0055114,GO:0071704,GO:0072350,GO:1902494,GO:1990204,GO:1990234 1.2.4.2 0.0 1121.0
PJD3_k127_4545957_10 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005353 524.0
PJD3_k127_4545957_11 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002459 494.0
PJD3_k127_4545957_12 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002609 469.0
PJD3_k127_4545957_13 Fic/DOC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008113 462.0
PJD3_k127_4545957_14 alcohol dehydrogenase K13953 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 456.0
PJD3_k127_4545957_15 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019904,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 428.0
PJD3_k127_4545957_16 PFAM Band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003085 413.0
PJD3_k127_4545957_17 FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009694 396.0
PJD3_k127_4545957_18 EamA-like transporter family K05786 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 376.0
PJD3_k127_4545957_19 prohibitin homologues - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008707 345.0
PJD3_k127_4545957_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 2.66e-316 1000.0
PJD3_k127_4545957_20 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 340.0
PJD3_k127_4545957_21 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 329.0
PJD3_k127_4545957_22 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 339.0
PJD3_k127_4545957_23 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 329.0
PJD3_k127_4545957_24 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 312.0
PJD3_k127_4545957_25 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 298.0
PJD3_k127_4545957_26 Putative neutral zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009551 280.0
PJD3_k127_4545957_27 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006446 263.0
PJD3_k127_4545957_28 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009946 248.0
PJD3_k127_4545957_29 PFAM MotA TolQ ExbB proton channel K03562 - - 0.00000000000000000000000000000000000000000000000000000000000000000005819 237.0
PJD3_k127_4545957_3 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 3.001e-270 841.0
PJD3_k127_4545957_30 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000002545 212.0
PJD3_k127_4545957_31 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000001325 209.0
PJD3_k127_4545957_32 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000002863 191.0
PJD3_k127_4545957_33 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.0000000000000000000000000000000000000000000000001692 182.0
PJD3_k127_4545957_34 Protein of unknown function (DUF3300) - - - 0.0000000000000000000000000000000000000000000004776 186.0
PJD3_k127_4545957_35 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000003727 173.0
PJD3_k127_4545957_36 Biopolymer transport protein ExbD TolR K03560 - - 0.00000000000000000000000000000000000000001968 158.0
PJD3_k127_4545957_37 RF-1 domain K15034 - - 0.0000000000000000000000000000000000001828 145.0
PJD3_k127_4545957_38 Belongs to the ompA family K03640 - - 0.0000000000000000000000000000000000007295 145.0
PJD3_k127_4545957_39 PFAM thioesterase superfamily protein K07107 - - 0.00000000000000000000000000000001524 132.0
PJD3_k127_4545957_4 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 1.043e-264 841.0
PJD3_k127_4545957_40 cAMP biosynthetic process - - - 0.00000000000000000000000000000005404 144.0
PJD3_k127_4545957_41 COG3474 Cytochrome c2 K08738 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009987,GO:0015979,GO:0016020,GO:0044237,GO:0044464,GO:0071944 - 0.00000000000000000000000000000009322 130.0
PJD3_k127_4545957_42 - - - - 0.0000000000000000000000001372 110.0
PJD3_k127_4545957_43 - - - - 0.00000000000000000000000352 110.0
PJD3_k127_4545957_44 - - - - 0.000000000000000000008616 96.0
PJD3_k127_4545957_45 pathogenesis - - - 0.00000000000000000002815 99.0
PJD3_k127_4545957_46 Domain of unknown function (DUF4389) - - - 0.000000000000000202 83.0
PJD3_k127_4545957_47 Ribbon-helix-helix protein, copG family - - - 0.000000000000003281 76.0
PJD3_k127_4545957_48 COG0810 Periplasmic protein TonB links inner and outer membranes K03646 - - 0.00000000000001004 86.0
PJD3_k127_4545957_49 Protein conserved in bacteria - - - 0.00000000000005867 73.0
PJD3_k127_4545957_5 COG1115 Na alanine symporter K03310 - - 2.798e-218 689.0
PJD3_k127_4545957_50 NfeD-like C-terminal, partner-binding - - - 0.0000000000003667 75.0
PJD3_k127_4545957_51 - - - - 0.0000000000004056 73.0
PJD3_k127_4545957_52 AAA domain K02450 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000006406 81.0
PJD3_k127_4545957_53 - - - - 0.000000002333 64.0
PJD3_k127_4545957_54 CAAX amino terminal protease family K07052 - - 0.0000004661 61.0
PJD3_k127_4545957_55 - - - - 0.00003746 53.0
PJD3_k127_4545957_6 Sodium:sulfate symporter transmembrane region - - - 2.367e-217 689.0
PJD3_k127_4545957_7 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.193e-197 637.0
PJD3_k127_4545957_8 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008942 597.0
PJD3_k127_4545957_9 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004744 573.0
PJD3_k127_4613149_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005796 424.0
PJD3_k127_4613149_1 PspA/IM30 family - - - 0.00000000000000000000000000000000000000000000000004243 184.0
PJD3_k127_4613149_3 phage shock protein C K03973 - - 0.0000000002743 66.0
PJD3_k127_4613149_4 PspC domain protein K03973 - - 0.00006946 49.0
PJD3_k127_4617808_0 Peptidase family M3 K01284 - 3.4.15.5 3.222e-270 848.0
PJD3_k127_4617808_1 Insulinase (Peptidase family M16) - - - 4.428e-194 616.0
PJD3_k127_4617808_2 COG1233 Phytoene dehydrogenase and related proteins K09516,K09835 - 1.3.99.23,5.2.1.13 0.0000000000002651 72.0
PJD3_k127_4628075_0 COG1960 Acyl-CoA dehydrogenases - - - 9.497e-257 804.0
PJD3_k127_4628075_1 succinylglutamate desuccinylase aspartoacylase K06987 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000334 494.0
PJD3_k127_4628075_2 and related enzymes K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 464.0
PJD3_k127_4628075_3 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K01782,K01825 GO:0003674,GO:0003824,GO:0003857,GO:0004165,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008692,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016856,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005202 335.0
PJD3_k127_4628075_4 Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, FabR directly influences the physical properties of the membrane bilayer K22105 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000007499 147.0
PJD3_k127_4628075_5 - - - - 0.000000000001062 77.0
PJD3_k127_4633979_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 2.282e-264 833.0
PJD3_k127_4633979_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 577.0
PJD3_k127_4633979_10 - - - - 0.00000000000000000000000000177 121.0
PJD3_k127_4633979_11 Bacterial extracellular solute-binding protein K02012 - - 0.000000000000000000000004135 113.0
PJD3_k127_4633979_2 Belongs to the GppA Ppx family K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 455.0
PJD3_k127_4633979_3 PFAM peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007809 383.0
PJD3_k127_4633979_4 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0044237 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 381.0
PJD3_k127_4633979_5 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599 328.0
PJD3_k127_4633979_6 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000000000000000000000000000000000000000000000000000000000000002434 228.0
PJD3_k127_4633979_7 Iron-sulfur cluster insertion protein ErpA K15724 - - 0.000000000000000000000000000000000000000000000000003818 185.0
PJD3_k127_4633979_8 Protein of unknown function, DUF484 - - - 0.00000000000000000000000000000000000000005353 158.0
PJD3_k127_4633979_9 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000002899 136.0
PJD3_k127_4634524_0 TonB dependent receptor - - - 0.0 1031.0
PJD3_k127_4634524_1 COG2871 Na -transporting NADH ubiquinone oxidoreductase, subunit NqrF K00351,K16246 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 479.0
PJD3_k127_4634524_2 histidine utilization repressor K05836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008963 246.0
PJD3_k127_4634524_3 conserved secreted or membrane protein precursor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000294 243.0
PJD3_k127_4634524_5 Protein of unknown function (DUF2855) - - - 0.000000000000000000000000000000000000000004938 159.0
PJD3_k127_4634524_6 Alpha/beta hydrolase of unknown function (DUF900) - - - 0.0000000000002118 73.0
PJD3_k127_4634524_7 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0000000000008881 68.0
PJD3_k127_4634524_8 Transposase K07497 - - 0.000000004119 58.0
PJD3_k127_4634524_9 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.000002602 49.0
PJD3_k127_4635163_0 gluconolactonase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 452.0
PJD3_k127_4635163_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 436.0
PJD3_k127_4635163_2 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 399.0
PJD3_k127_4635163_3 transport, permease protein K01992 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 390.0
PJD3_k127_4635163_4 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000003851 136.0
PJD3_k127_4635163_5 MazG-like family - - - 0.0000000000000000000000000000006946 126.0
PJD3_k127_4635163_6 Transcription factor zinc-finger K09981 - - 0.0000000000000000000000004881 108.0
PJD3_k127_4635163_7 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000005991 98.0
PJD3_k127_4639519_0 signal-transduction protein containing cAMP-binding and CBS domains K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 362.0
PJD3_k127_4639519_1 STAS domain - - - 0.000000000000000000000000000003874 123.0
PJD3_k127_4639519_2 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000005492 49.0
PJD3_k127_4648549_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 7.053e-226 715.0
PJD3_k127_4648549_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007974 596.0
PJD3_k127_4648549_10 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000007776 172.0
PJD3_k127_4648549_11 glyoxalase III activity - - - 0.0000000000000000000000000000000001488 139.0
PJD3_k127_4648549_12 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K00219,K01069 - 1.3.1.34,3.1.2.6 0.000000000000000000000000000000001789 139.0
PJD3_k127_4648549_14 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000006807 105.0
PJD3_k127_4648549_15 Belongs to the HSP15 family K04762 GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009451,GO:0009628,GO:0009987,GO:0016070,GO:0033554,GO:0034605,GO:0034641,GO:0043021,GO:0043023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 - 0.000000000000000000002309 98.0
PJD3_k127_4648549_16 COG5608 Conserved secreted protein - - - 0.0000000004727 63.0
PJD3_k127_4648549_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000717 556.0
PJD3_k127_4648549_3 hydrolase activity, acting on ester bonds K01563 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 3.8.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 417.0
PJD3_k127_4648549_4 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 400.0
PJD3_k127_4648549_5 Major royal jelly protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005763 399.0
PJD3_k127_4648549_6 mechanosensitive ion channel K03442 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 320.0
PJD3_k127_4648549_7 COG0491 Zn-dependent hydrolases, including glyoxylases K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004075 286.0
PJD3_k127_4648549_8 Steryl acetyl hydrolase K14731 - 3.1.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001688 278.0
PJD3_k127_4648549_9 proteolysis - - - 0.000000000000000000000000000000000000000000000003181 183.0
PJD3_k127_4649250_0 COG0665 Glycine D-amino acid oxidases (deaminating) K09471 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0044424,GO:0044464,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007429 471.0
PJD3_k127_4649250_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 299.0
PJD3_k127_4649250_2 protein conserved in bacteria - - - 0.000000000004695 67.0
PJD3_k127_4649250_3 - - - - 0.000000005347 66.0
PJD3_k127_4649265_0 operon transcriptional activator K03974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 384.0
PJD3_k127_4649265_1 COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription K03969 GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0008289,GO:0009266,GO:0009271,GO:0009408,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009889,GO:0009898,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019897,GO:0019898,GO:0031234,GO:0031323,GO:0031326,GO:0042802,GO:0043167,GO:0043168,GO:0043207,GO:0043433,GO:0044092,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0060187,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098552,GO:0098562,GO:0098586,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000001634 151.0
PJD3_k127_4649265_2 - K01992 - - 0.000000000001174 75.0
PJD3_k127_4683789_0 acyl-CoA dehydrogenase K20035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002195 608.0
PJD3_k127_4683789_1 - - - - 0.0000000000000000000000000000000000000009819 153.0
PJD3_k127_4683789_2 extracellular matrix structural constituent - - - 0.00000000000000000000000000000006959 146.0
PJD3_k127_4683789_3 COG4970 Tfp pilus assembly protein FimT K08084 - - 0.000000000000000000000002873 109.0
PJD3_k127_4683789_4 TIGRFAM type IV pilus modification protein PilV K02671 - - 0.000000000000000000000324 103.0
PJD3_k127_4683789_5 Tellurite resistance protein TerB - - - 0.0000000000000000000005592 101.0
PJD3_k127_4683789_6 amine dehydrogenase activity K19668 - 3.2.1.91 0.000000000000000004186 100.0
PJD3_k127_4683789_7 NMT1/THI5 like - - - 0.00000000000000004746 84.0
PJD3_k127_4683789_8 Prepilin-type cleavage methylation-like K02672 - - 0.0000003013 54.0
PJD3_k127_4683789_9 OmpA-like transmembrane domain - - - 0.00002635 58.0
PJD3_k127_4693004_0 OmpA family - - - 0.0 1912.0
PJD3_k127_4693004_1 domain protein - - - 0.0 1699.0
PJD3_k127_4693004_10 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004476 264.0
PJD3_k127_4693004_11 Strictosidine synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000158 225.0
PJD3_k127_4693004_12 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000000000000000000000000001712 198.0
PJD3_k127_4693004_13 - - - - 0.0000000000000000000000000000000000000000000000004057 180.0
PJD3_k127_4693004_14 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000000001002 175.0
PJD3_k127_4693004_15 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000000008681 171.0
PJD3_k127_4693004_16 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000007884 158.0
PJD3_k127_4693004_17 Universal stress protein family - - - 0.00000000000000000000000000000000000002697 149.0
PJD3_k127_4693004_18 - - - - 0.0000000000000000847 84.0
PJD3_k127_4693004_2 Tetratricopeptide repeat - - - 2.153e-310 981.0
PJD3_k127_4693004_3 Peptidase family M49 - - - 4.037e-217 687.0
PJD3_k127_4693004_4 Tetratricopeptide repeat - - - 6.79e-197 631.0
PJD3_k127_4693004_5 PFAM membrane bound O-acyl transferase MBOAT family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 471.0
PJD3_k127_4693004_6 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 377.0
PJD3_k127_4693004_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 309.0
PJD3_k127_4693004_8 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006685 297.0
PJD3_k127_4693004_9 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000003751 276.0
PJD3_k127_4693875_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1319.0
PJD3_k127_4693875_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 2.364e-253 797.0
PJD3_k127_4693875_10 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 479.0
PJD3_k127_4693875_11 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 447.0
PJD3_k127_4693875_12 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009394 430.0
PJD3_k127_4693875_14 PFAM Polyphosphate kinase 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008552 375.0
PJD3_k127_4693875_15 Vacuole effluxer Atg22 like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 364.0
PJD3_k127_4693875_16 N-acetylmuramoyl-L-alanine amidase K01448 GO:0000003,GO:0000910,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0008745,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019954,GO:0022402,GO:0022414,GO:0030288,GO:0030313,GO:0031975,GO:0032505,GO:0042597,GO:0043093,GO:0044464,GO:0051301,GO:0061783 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 351.0
PJD3_k127_4693875_17 ATP ADP translocase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002378 351.0
PJD3_k127_4693875_18 associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 345.0
PJD3_k127_4693875_19 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000502 337.0
PJD3_k127_4693875_2 Oligopeptide transporter OPT - - - 4.38e-252 788.0
PJD3_k127_4693875_20 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 GO:0000287,GO:0003674,GO:0003824,GO:0003864,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0042802,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006068 336.0
PJD3_k127_4693875_21 Esterase of the alpha-beta hydrolase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 329.0
PJD3_k127_4693875_22 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 295.0
PJD3_k127_4693875_23 HflC and HflK could encode or regulate a protease K04088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 298.0
PJD3_k127_4693875_24 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 286.0
PJD3_k127_4693875_25 HflC and HflK could regulate a protease K04087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004362 265.0
PJD3_k127_4693875_26 COG1428 Deoxynucleoside kinases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001551 259.0
PJD3_k127_4693875_27 Belongs to the WrbA family K03809 - 1.6.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000003809 252.0
PJD3_k127_4693875_28 permease K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001382 264.0
PJD3_k127_4693875_29 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000345 251.0
PJD3_k127_4693875_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 GO:0002161,GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043906,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 2.527e-236 743.0
PJD3_k127_4693875_30 Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001473 245.0
PJD3_k127_4693875_31 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000001227 228.0
PJD3_k127_4693875_32 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000002205 219.0
PJD3_k127_4693875_33 Permease YjgP YjgQ K11720 - - 0.00000000000000000000000000000000000000000000000000000006771 212.0
PJD3_k127_4693875_34 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 - 2.7.6.3 0.000000000000000000000000000000000000000000001194 172.0
PJD3_k127_4693875_35 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.000000000000000000000000000000000000000001161 161.0
PJD3_k127_4693875_36 DNA polymerase III, chi subunit K02339 - 2.7.7.7 0.0000000000000000000000000000000000000001469 156.0
PJD3_k127_4693875_37 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000000000001629 145.0
PJD3_k127_4693875_38 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000003495 138.0
PJD3_k127_4693875_39 - - - - 0.00000000000000000000000000000000003348 141.0
PJD3_k127_4693875_4 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 4.144e-208 662.0
PJD3_k127_4693875_40 RDD family - - - 0.0000000000000000000000000000000001355 136.0
PJD3_k127_4693875_41 MAPEG family - - - 0.0000000000000000000000000000001498 128.0
PJD3_k127_4693875_42 COG1393 Arsenate reductase and related proteins, glutaredoxin family K00537 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 1.20.4.1 0.0000000000000000000000000001935 118.0
PJD3_k127_4693875_43 Protein of unknown function (DUF2799) - - - 0.000000000000000000000000001779 117.0
PJD3_k127_4693875_44 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.0000000000000000000008614 99.0
PJD3_k127_4693875_45 phosphatidylethanolamine metabolic process K01613 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 4.1.1.65 0.0000000000000000001722 98.0
PJD3_k127_4693875_46 Nuclease-related domain - - - 0.00000000004759 74.0
PJD3_k127_4693875_48 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.0000000008438 61.0
PJD3_k127_4693875_5 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.4 4.54e-203 639.0
PJD3_k127_4693875_51 PFAM CAAX amino terminal protease family - - - 0.0005311 42.0
PJD3_k127_4693875_6 Calx-beta domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 625.0
PJD3_k127_4693875_7 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000561 503.0
PJD3_k127_4693875_8 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 491.0
PJD3_k127_4693875_9 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003107 484.0
PJD3_k127_469652_0 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K15022 - 1.17.1.10 1.04e-294 913.0
PJD3_k127_469652_1 pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 1.464e-267 836.0
PJD3_k127_469652_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000888 282.0
PJD3_k127_4707384_0 E1-E2 ATPase K17686 - 3.6.3.54 0.0 1069.0
PJD3_k127_4711635_0 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.0 1039.0
PJD3_k127_4711635_1 related to penicillin acylase K07116 - 3.5.1.97 0.0 1027.0
PJD3_k127_4711635_10 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 336.0
PJD3_k127_4711635_11 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 325.0
PJD3_k127_4711635_12 ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001053 273.0
PJD3_k127_4711635_13 related to lactoylglutathione lyase K06996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003912 263.0
PJD3_k127_4711635_14 Domain of unknown function (DUF3327) K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000006839 232.0
PJD3_k127_4711635_15 Protein of unknown function (DUF2955) - - - 0.000000000000000000000000000000000000000000000000000000000000001155 233.0
PJD3_k127_4711635_16 PFAM YbaK prolyl-tRNA synthetase associated region K19055 - - 0.00000000000000000000000000000000000000000000000000000008034 198.0
PJD3_k127_4711635_17 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000005803 181.0
PJD3_k127_4711635_18 Domain of unknown function (DUF4136) - - - 0.0000000000000000000000000000000000000000006611 164.0
PJD3_k127_4711635_19 Ion channel - - - 0.000000000000000000000000000002294 125.0
PJD3_k127_4711635_2 COG3119 Arylsulfatase A and related enzymes K01130 - 3.1.6.1 4.656e-307 952.0
PJD3_k127_4711635_20 Cysteine-rich CPXCG - - - 0.0000000000000000004082 88.0
PJD3_k127_4711635_21 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000001314 82.0
PJD3_k127_4711635_3 Sulfatase K01130 - 3.1.6.1 2.887e-264 820.0
PJD3_k127_4711635_4 proteins of the AP superfamily - - - 2.353e-260 812.0
PJD3_k127_4711635_5 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0050896 - 7.902e-258 803.0
PJD3_k127_4711635_6 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003138 527.0
PJD3_k127_4711635_7 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004929 490.0
PJD3_k127_4711635_8 PFAM Peptidoglycan-binding domain 1 protein K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002624 466.0
PJD3_k127_4711635_9 Biotin-lipoyl like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 377.0
PJD3_k127_4713454_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 459.0
PJD3_k127_4713454_1 - - - - 0.0000000000000000000000000000000003655 142.0
PJD3_k127_4713454_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000837 114.0
PJD3_k127_4713454_3 membrane K07148 - - 0.0000000000000000003722 95.0
PJD3_k127_4713454_4 membrane K07148 - - 0.000000000000001742 80.0
PJD3_k127_4726728_0 Domain of unknown function (DUF5117) - - - 7.676e-267 844.0
PJD3_k127_4726728_1 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008973,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009262,GO:0009264,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005618 602.0
PJD3_k127_4726728_10 ABC-type transport system, involved in lipoprotein release, permease component - - - 0.0000000000000000000000000000000000000000000000000000000002289 207.0
PJD3_k127_4726728_11 phosphoglycolate phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000001971 203.0
PJD3_k127_4726728_12 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000001436 160.0
PJD3_k127_4726728_13 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000003073 165.0
PJD3_k127_4726728_14 COG1957 Inosine-uridine nucleoside N-ribohydrolase K01239 - 3.2.2.1 0.0000000000000000000000000000000000002888 142.0
PJD3_k127_4726728_15 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000001959 138.0
PJD3_k127_4726728_16 Transglycosylase associated protein - - - 0.0000000000000000000000007629 106.0
PJD3_k127_4726728_17 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.0000000000000000001563 99.0
PJD3_k127_4726728_18 Hemerythrin HHE cation binding domain - - - 0.0000000000000000005369 94.0
PJD3_k127_4726728_19 - - - - 0.00000000000000003285 86.0
PJD3_k127_4726728_2 COG0402 Cytosine deaminase and related metal-dependent hydrolases K12960 - 3.5.4.28,3.5.4.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 500.0
PJD3_k127_4726728_20 Sigma-70, region 4 - - - 0.0000000000000008453 84.0
PJD3_k127_4726728_3 peptidase M48, Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 484.0
PJD3_k127_4726728_4 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00758 - 2.4.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 464.0
PJD3_k127_4726728_5 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 449.0
PJD3_k127_4726728_6 Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314 438.0
PJD3_k127_4726728_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 432.0
PJD3_k127_4726728_8 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 372.0
PJD3_k127_4726728_9 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000001344 240.0
PJD3_k127_4727300_0 lysine biosynthetic process via aminoadipic acid - - - 1.418e-268 848.0
PJD3_k127_4727300_1 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 1.904e-231 727.0
PJD3_k127_4727300_2 Belongs to the peptidase S1B family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 519.0
PJD3_k127_4727300_3 TonB-dependent receptor K02014,K16087 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009801 341.0
PJD3_k127_4727300_4 5'-nucleotidase, C-terminal domain K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009182 314.0
PJD3_k127_4727300_5 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007921 291.0
PJD3_k127_4727300_6 hemolysin III K11068 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000169 271.0
PJD3_k127_4727300_7 Universal stress protein family K14055 - - 0.00000000000000000000000000000079 133.0
PJD3_k127_4727300_8 TonB-dependent receptor K16087 - - 0.00000000000000000000000101 121.0
PJD3_k127_4727300_9 Sulfite exporter TauE/SafE K07090 - - 0.000000000005376 76.0
PJD3_k127_4746020_0 TIGRFAM type IV-A pilus assembly ATPase PilB K02652 - - 1.445e-235 741.0
PJD3_k127_4746020_1 Type II secretion system K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 523.0
PJD3_k127_4746020_2 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02464,K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 346.0
PJD3_k127_4746020_3 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000000117 189.0
PJD3_k127_4746020_4 Pilin (bacterial filament) K02650,K02655 - - 0.00000000000000000000000000000000003377 143.0
PJD3_k127_4746020_5 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000006902 59.0
PJD3_k127_4748114_0 Aminotransferase class-III K00822 - 2.6.1.18 2.781e-197 624.0
PJD3_k127_4748114_1 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 5.515e-194 611.0
PJD3_k127_4748114_2 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008718 387.0
PJD3_k127_4748114_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 380.0
PJD3_k127_4748114_4 Helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001883 228.0
PJD3_k127_4759261_0 COG0339 Zn-dependent oligopeptidases K01284 - 3.4.15.5 0.0 1012.0
PJD3_k127_4759261_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003678 608.0
PJD3_k127_4759261_10 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001042 287.0
PJD3_k127_4759261_11 UbiA prenyltransferase family K02548 - 2.5.1.74 0.000000000000000000000000000000000000000000000000000000000000000000004223 246.0
PJD3_k127_4759261_12 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000001402 237.0
PJD3_k127_4759261_13 - - - - 0.00000000000000000000000000000000000000000000000162 194.0
PJD3_k127_4759261_14 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.000000000000000000000000000000000000000000778 162.0
PJD3_k127_4759261_15 CBS domain - - - 0.0000000000000000000000000000000000000003387 156.0
PJD3_k127_4759261_16 protein conserved in bacteria K05952 - - 0.000001627 52.0
PJD3_k127_4759261_2 aminopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 575.0
PJD3_k127_4759261_3 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00347 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 540.0
PJD3_k127_4759261_4 Polysulphide reductase, NrfD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 538.0
PJD3_k127_4759261_5 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 537.0
PJD3_k127_4759261_6 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 376.0
PJD3_k127_4759261_7 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 370.0
PJD3_k127_4759261_8 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0051179,GO:0051234,GO:0055114,GO:0098796,GO:1902494 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 327.0
PJD3_k127_4759261_9 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003941 324.0
PJD3_k127_4789610_0 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001877 255.0
PJD3_k127_4789610_1 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000001861 124.0
PJD3_k127_4791079_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000001188 168.0
PJD3_k127_4791079_1 DsrE/DsrF-like family - - - 0.0000000000000000000000000000000000000000003264 160.0
PJD3_k127_4791079_2 pyruvate phosphate dikinase K01006 - 2.7.9.1 0.0000000000000000000000000008756 113.0
PJD3_k127_4791079_3 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.00000000000008635 71.0
PJD3_k127_4791079_4 AntiSigma factor - GO:0000988,GO:0000989,GO:0003674,GO:0005488,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009593,GO:0009628,GO:0009889,GO:0010556,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0042221,GO:0043167,GO:0043169,GO:0043934,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051606,GO:0051775,GO:0051776,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2001141 - 0.000000000001063 71.0
PJD3_k127_4811451_0 hydroxymethylglutaryl-CoA reductase K00021 - 1.1.1.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008851 590.0
PJD3_k127_4811451_1 Acyltransferase ws dgat mgat K00635 - 2.3.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007725 513.0
PJD3_k127_4811451_2 Carbohydrate-selective porin, OprB family K07267 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005773 257.0
PJD3_k127_4811451_3 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000003363 242.0
PJD3_k127_4811451_4 Belongs to the BI1 family K06890 - - 0.00000000000000000000000000000000000000000000000000000000000606 215.0
PJD3_k127_4834805_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 422.0
PJD3_k127_4834805_1 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 375.0
PJD3_k127_4834805_2 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004255 395.0
PJD3_k127_4834805_3 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000001409 249.0
PJD3_k127_4834805_4 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000009448 201.0
PJD3_k127_4834805_5 Belongs to the MtfA family K09933 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006508,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009889,GO:0010468,GO:0010556,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0043170,GO:0043433,GO:0044092,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000000008028 167.0
PJD3_k127_4834805_7 Adenylate cyclase - - - 0.0000000009142 63.0
PJD3_k127_4843396_0 amino acid K03294,K19540 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006040,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009063,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0016054,GO:0019752,GO:0022804,GO:0022857,GO:0030389,GO:0030392,GO:0030393,GO:0031224,GO:0031226,GO:0034220,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044425,GO:0044459,GO:0044464,GO:0046348,GO:0046395,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0098656,GO:1901135,GO:1901136,GO:1901281,GO:1901564,GO:1901565,GO:1901575,GO:1902475,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 344.0
PJD3_k127_4843396_1 PfkB domain protein K16328 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050225 2.7.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000001101 257.0
PJD3_k127_4843396_2 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0002626 45.0
PJD3_k127_4860386_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 373.0
PJD3_k127_4860386_1 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 370.0
PJD3_k127_4860386_10 ABC1 family - - - 0.000000000000000007109 91.0
PJD3_k127_4860386_11 - - - - 0.0000003045 59.0
PJD3_k127_4860386_2 Related to nicotinamidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 337.0
PJD3_k127_4860386_3 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 298.0
PJD3_k127_4860386_4 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000167 253.0
PJD3_k127_4860386_5 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000001424 226.0
PJD3_k127_4860386_6 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000008242 222.0
PJD3_k127_4860386_7 Cupin - - - 0.000000000000000000000000000000000000000001526 168.0
PJD3_k127_4860386_8 COG0471 Di- and tricarboxylate transporters - - - 0.000000000000000000000000000000000001687 142.0
PJD3_k127_4860386_9 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K11747 - - 0.0000000000000000000000000000003459 126.0
PJD3_k127_4866201_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 5.248e-220 698.0
PJD3_k127_4866201_1 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002963 434.0
PJD3_k127_4866201_2 Adenosine/AMP deaminase K01488,K21053 - 3.5.4.2,3.5.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006498 421.0
PJD3_k127_4866201_3 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 403.0
PJD3_k127_4866201_4 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 391.0
PJD3_k127_4866201_5 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000434 381.0
PJD3_k127_4866201_6 Sulfatase-modifying factor enzyme 1 K11912 - 2.7.11.1 0.0000000000000000000000000000000000119 153.0
PJD3_k127_4866201_7 PgaD-like protein K11937 - - 0.0000000000000000000004294 104.0
PJD3_k127_4866842_0 glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 1982.0
PJD3_k127_4866842_1 Pyridine nucleotide-disulphide oxidoreductase K00266 - 1.4.1.13,1.4.1.14 2.542e-229 719.0
PJD3_k127_4866842_10 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 449.0
PJD3_k127_4866842_11 COG0534 Na -driven multidrug efflux pump K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 430.0
PJD3_k127_4866842_12 Mate efflux family protein K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008764 408.0
PJD3_k127_4866842_13 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003724 396.0
PJD3_k127_4866842_14 Protein of unknown function (DUF2891) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301 389.0
PJD3_k127_4866842_15 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 373.0
PJD3_k127_4866842_16 glycerophosphoryl diester phosphodiesterase K01126 GO:0003674,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005623,GO:0008081,GO:0008889,GO:0009279,GO:0016020,GO:0016787,GO:0016788,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0042578,GO:0042597,GO:0043167,GO:0043169,GO:0044462,GO:0044464,GO:0046872,GO:0071944 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 369.0
PJD3_k127_4866842_17 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 379.0
PJD3_k127_4866842_18 RNA polymerase sigma factor RpoH K03089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 355.0
PJD3_k127_4866842_19 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008534,GO:0009987,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 347.0
PJD3_k127_4866842_2 Belongs to the peptidase S16 family - - - 5.852e-224 719.0
PJD3_k127_4866842_20 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483,K07663 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 323.0
PJD3_k127_4866842_21 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 300.0
PJD3_k127_4866842_22 Multidrug efflux pump K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 308.0
PJD3_k127_4866842_23 PFAM Fructosamine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009682 298.0
PJD3_k127_4866842_24 PFAM HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001059 282.0
PJD3_k127_4866842_25 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006106 266.0
PJD3_k127_4866842_26 Part of the ABC transporter FtsEX involved in cellular division K09811 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0009274,GO:0009276,GO:0009987,GO:0016020,GO:0016021,GO:0030312,GO:0030313,GO:0031224,GO:0031975,GO:0032153,GO:0044425,GO:0044464,GO:0051301,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001922 271.0
PJD3_k127_4866842_27 Exodeoxyribonuclease IX - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003156 269.0
PJD3_k127_4866842_28 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000004089 243.0
PJD3_k127_4866842_29 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000009401 220.0
PJD3_k127_4866842_3 Major Facilitator Superfamily K02445 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008509,GO:0008643,GO:0015075,GO:0015103,GO:0015114,GO:0015144,GO:0015166,GO:0015168,GO:0015291,GO:0015297,GO:0015301,GO:0015315,GO:0015318,GO:0015527,GO:0015698,GO:0015711,GO:0015748,GO:0015791,GO:0015793,GO:0015794,GO:0015850,GO:0016020,GO:0022804,GO:0022857,GO:0034219,GO:0034220,GO:0035435,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:0099516,GO:1901264,GO:1901618 - 9.734e-213 668.0
PJD3_k127_4866842_30 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000000002805 203.0
PJD3_k127_4866842_31 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000001546 198.0
PJD3_k127_4866842_32 Sortase family K07284 - 3.4.22.70 0.00000000000000000000000000000000000000000000000000006624 194.0
PJD3_k127_4866842_33 Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle K08316 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008990,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052913,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.171 0.000000000000000000000000000000000000000000000000001116 191.0
PJD3_k127_4866842_34 PFAM Bacterial protein of - - - 0.000000000000000000000000000000000000000000000000005533 188.0
PJD3_k127_4866842_35 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000000000000009688 179.0
PJD3_k127_4866842_36 - - - - 0.00000000000000000000000000000000000000000001745 170.0
PJD3_k127_4866842_37 COG2207 AraC-type DNA-binding domain-containing proteins - - - 0.000000000000000000000000000000000000000005294 169.0
PJD3_k127_4866842_38 Protein of unknown function (DUF3365) - - - 0.00000000000000000000000000000000000000004944 158.0
PJD3_k127_4866842_39 Protein of unknown function (DUF3465) - - - 0.000000000000000000000000000009013 123.0
PJD3_k127_4866842_4 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.141e-211 665.0
PJD3_k127_4866842_40 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000009498 120.0
PJD3_k127_4866842_41 Protein of unknown function (DUF962) - - - 0.000000000000000000000008699 106.0
PJD3_k127_4866842_42 membrane - - - 0.00000000000000000000001015 103.0
PJD3_k127_4866842_43 there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc K02913 - - 0.00000000000000007891 79.0
PJD3_k127_4866842_44 Late embryogenesis abundant protein - - - 0.00000000001098 72.0
PJD3_k127_4866842_45 - - - - 0.00000000006706 70.0
PJD3_k127_4866842_46 - - - - 0.000001957 55.0
PJD3_k127_4866842_5 Acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006705 587.0
PJD3_k127_4866842_6 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 548.0
PJD3_k127_4866842_7 Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed K00626,K00632 - 2.3.1.16,2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005876 547.0
PJD3_k127_4866842_8 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 554.0
PJD3_k127_4866842_9 Fatty acid desaturase K00496 GO:0003674,GO:0003824,GO:0004497,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016491,GO:0016705,GO:0016713,GO:0018685,GO:0043446,GO:0043448,GO:0044237,GO:0044248,GO:0055114,GO:0071704,GO:1901575 1.14.15.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 451.0
PJD3_k127_4947103_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1111.0
PJD3_k127_4947103_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 578.0
PJD3_k127_4947103_2 AAA ATPase, central domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 452.0
PJD3_k127_4947103_3 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030234,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0065007,GO:0065009,GO:0098772 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 308.0
PJD3_k127_4947103_4 Bacterial SH3 domain homologues K07184 - - 0.0000000000000000000000000000000000000000000000000000000000000003653 227.0
PJD3_k127_4947103_5 Protein of unknown function (DUF1232) - - - 0.00000000000000000000000000000000000000000000738 168.0
PJD3_k127_4947103_6 Glutathione-dependent formaldehyde-activating - - - 0.0000000000000000000000000000000000000000001345 160.0
PJD3_k127_4947103_7 Protein of unknown function (DUF1249) K09920 - - 0.0000000000000000000000000009318 119.0
PJD3_k127_4947103_8 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000006009 75.0
PJD3_k127_4974934_0 Alpha amylase, catalytic domain K00701 - 2.4.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 456.0
PJD3_k127_4974934_1 helix_turn _helix lactose operon repressor K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 386.0
PJD3_k127_4974934_2 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000007548 226.0
PJD3_k127_4974934_3 Acid phosphatase homologues - - - 0.0000000000000000000000000000000005048 149.0
PJD3_k127_5044295_0 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 6.326e-243 755.0
PJD3_k127_5044295_1 Radical SAM K01012 - 2.8.1.6 2.328e-208 654.0
PJD3_k127_5044295_10 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 379.0
PJD3_k127_5044295_11 Protein of unknown function (DUF1298) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 329.0
PJD3_k127_5044295_12 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008122 269.0
PJD3_k127_5044295_13 DsrE/DsrF/DrsH-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000492 227.0
PJD3_k127_5044295_14 Glycine cleavage H-protein K02437 - - 0.00000000000000000000000000000000000000000000000000000000000003806 216.0
PJD3_k127_5044295_15 GMP synthase (glutamine-hydrolyzing) activity - - - 0.000000000000000000000000000000000000000000000000000000000008423 216.0
PJD3_k127_5044295_16 - - - - 0.00000000000000000000000000000000000000000000004491 173.0
PJD3_k127_5044295_17 Planctomycete cytochrome C - - - 0.00000000000000000000000000000001059 131.0
PJD3_k127_5044295_18 transcriptional regulators K22042 - - 0.0000000000000000000000000137 112.0
PJD3_k127_5044295_19 Domain of unknown function (DUF5062) - - - 0.000000000000000000006799 94.0
PJD3_k127_5044295_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003394 541.0
PJD3_k127_5044295_20 Domain of unknown function DUF302 - - - 0.0000000007649 70.0
PJD3_k127_5044295_3 FAD dependent oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000471 542.0
PJD3_k127_5044295_4 Aminotransferase class-V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002489 526.0
PJD3_k127_5044295_5 Radical SAM K09711 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 509.0
PJD3_k127_5044295_6 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 430.0
PJD3_k127_5044295_7 biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 402.0
PJD3_k127_5044295_8 long-chain fatty acid transport protein K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 405.0
PJD3_k127_5044295_9 Including yeast histone deacetylase and acetoin utilization protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002674 387.0
PJD3_k127_5050375_0 Aldehyde dehydrogenase K00128 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 534.0
PJD3_k127_5050375_1 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 492.0
PJD3_k127_5050375_2 branched-chain amino acid ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 343.0
PJD3_k127_5050375_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006877 345.0
PJD3_k127_5050375_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 312.0
PJD3_k127_5050375_5 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002912 302.0
PJD3_k127_5065779_0 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 605.0
PJD3_k127_5065779_1 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009546 405.0
PJD3_k127_5065779_2 WD40 repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004049 429.0
PJD3_k127_5065779_3 Sigma factor regulator FecR K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 369.0
PJD3_k127_5065779_4 UTRA K03710 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 292.0
PJD3_k127_5065779_5 PFAM peptidase C14 caspase catalytic subunit p20 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002819 296.0
PJD3_k127_5065779_6 CHASE2 domain - - - 0.000000000000000000000000000000000000000000006991 183.0
PJD3_k127_5065779_7 Papain family cysteine protease - - - 0.00008193 51.0
PJD3_k127_5110545_0 COG0668 Small-conductance mechanosensitive channel K03442 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 367.0
PJD3_k127_5221374_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region - - - 4.538e-304 950.0
PJD3_k127_52501_0 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 1.412e-206 674.0
PJD3_k127_52501_1 homoserine kinase type II (Protein kinase fold) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000176 280.0
PJD3_k127_52501_2 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001657 270.0
PJD3_k127_52501_3 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001363 252.0
PJD3_k127_5270480_0 COG1960 Acyl-CoA dehydrogenases - - - 2.309e-195 617.0
PJD3_k127_5270480_1 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K01782,K01825 GO:0003674,GO:0003824,GO:0003857,GO:0004165,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0008692,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016856,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 1.1.1.35,4.2.1.17,5.1.2.3,5.3.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003388 278.0
PJD3_k127_5290602_0 AcrB/AcrD/AcrF family - - - 0.0 1036.0
PJD3_k127_5290602_1 transporter - - - 5.021e-294 917.0
PJD3_k127_5290602_10 Aminotransferase class-III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008414 432.0
PJD3_k127_5290602_11 Cytosol aminopeptidase family, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 434.0
PJD3_k127_5290602_12 Succinylglutamate desuccinylase aspartoacylase K06987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008336 424.0
PJD3_k127_5290602_13 MltA-interacting MipA family protein K07274 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 406.0
PJD3_k127_5290602_14 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009758 394.0
PJD3_k127_5290602_15 Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 399.0
PJD3_k127_5290602_16 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 362.0
PJD3_k127_5290602_17 Mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 302.0
PJD3_k127_5290602_18 CorA-like Mg2+ transporter protein K16074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 298.0
PJD3_k127_5290602_19 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000182 256.0
PJD3_k127_5290602_2 Dehydratase family K01690 - 4.2.1.12 3.471e-242 763.0
PJD3_k127_5290602_20 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000014 241.0
PJD3_k127_5290602_21 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000000009754 237.0
PJD3_k127_5290602_22 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase K01625 - 4.1.2.14,4.1.3.42 0.000000000000000000000000000000000000000000000000000000000000000006793 235.0
PJD3_k127_5290602_23 aspartate racemase K01779 - 5.1.1.13 0.00000000000000000000000000000000000000000000000000000000000005506 221.0
PJD3_k127_5290602_24 PFAM SOUL heme-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000003035 213.0
PJD3_k127_5290602_25 protein conserved in archaea - - - 0.0000000000000000000000000000000000000000000000000001471 190.0
PJD3_k127_5290602_26 Transcriptional regulator K19337 - - 0.00000000000000000000000000000000000000000000000001212 190.0
PJD3_k127_5290602_27 6-phosphogluconolactonase K01057 - 3.1.1.31 0.000000000000000000000000000000000000000000001837 172.0
PJD3_k127_5290602_28 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000002485 172.0
PJD3_k127_5290602_29 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000537 152.0
PJD3_k127_5290602_3 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.009e-211 669.0
PJD3_k127_5290602_30 Complex I intermediate-associated protein 30 (CIA30) - - - 0.0000000000000000000000000000000001022 140.0
PJD3_k127_5290602_31 Protein of unknown function (DUF2452) - - - 0.0000000000000000000000000000003284 131.0
PJD3_k127_5290602_32 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.000000000000000004088 90.0
PJD3_k127_5290602_33 - - - - 0.00000001192 64.0
PJD3_k127_5290602_34 Transcriptional regulator, MarR family - - - 0.0002231 46.0
PJD3_k127_5290602_4 Aminotransferase class-III - - - 8.518e-203 638.0
PJD3_k127_5290602_5 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 4.745e-198 628.0
PJD3_k127_5290602_6 nucleoside-diphosphate sugar epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 560.0
PJD3_k127_5290602_7 FAD linked oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007483 517.0
PJD3_k127_5290602_8 Belongs to the RimK family K05844 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 471.0
PJD3_k127_5290602_9 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 460.0
PJD3_k127_5303574_0 Required for chromosome condensation and partitioning K03529 - - 0.0 1086.0
PJD3_k127_5303574_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 316.0
PJD3_k127_5303574_2 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression K06204 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000004592 198.0
PJD3_k127_5303574_3 Serine aminopeptidase, S33 K07019 - - 0.000000000000001497 80.0
PJD3_k127_5303574_4 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins K03528 - - 0.0000000000003313 75.0
PJD3_k127_5322379_0 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 1.713e-245 776.0
PJD3_k127_5322379_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 4.258e-215 679.0
PJD3_k127_5322379_2 dihydroorotase K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006645 569.0
PJD3_k127_5322379_3 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001139 237.0
PJD3_k127_5325729_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.771e-283 876.0
PJD3_k127_5325729_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 501.0
PJD3_k127_5325729_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206 406.0
PJD3_k127_5325729_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 GO:0003674,GO:0003824,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0042364,GO:0042398,GO:0042493,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0046655,GO:0046656,GO:0050896,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 317.0
PJD3_k127_5325729_4 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 304.0
PJD3_k127_5325729_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006376 301.0
PJD3_k127_5325729_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001779 280.0
PJD3_k127_5325729_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000000000000000000000000001534 182.0
PJD3_k127_5325729_8 Preprotein translocase subunit SecG K03075 - - 0.00000000000000000007599 94.0
PJD3_k127_5325729_9 Alternative locus ID K00748 - 2.4.1.182 0.0008562 43.0
PJD3_k127_5331247_0 Transposase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007938 477.0
PJD3_k127_5331247_1 Transposase - - - 0.00000000000000000000000000000125 124.0
PJD3_k127_5331247_3 L COG2826 Transposase and inactivated derivatives, IS30 family K07482 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004803,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006313,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0030983,GO:0032135,GO:0032196,GO:0032991,GO:0032993,GO:0034641,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.000000000000000001561 85.0
PJD3_k127_5331247_4 - - - - 0.000000108 61.0
PJD3_k127_5353252_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1447.0
PJD3_k127_5353252_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1218.0
PJD3_k127_5353252_10 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 477.0
PJD3_k127_5353252_11 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 477.0
PJD3_k127_5353252_12 Splits dipeptides with a prolyl residue in the C- terminal position K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 462.0
PJD3_k127_5353252_13 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 423.0
PJD3_k127_5353252_14 Transfers the fatty acyl group on membrane lipoproteins K03820 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016021,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0031224,GO:0031226,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 377.0
PJD3_k127_5353252_15 DNA polymerase III, delta subunit K02340 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0032991,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 320.0
PJD3_k127_5353252_16 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0000028,GO:0000900,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0006412,GO:0006417,GO:0006446,GO:0006450,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015935,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031554,GO:0031564,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045182,GO:0045727,GO:0045903,GO:0045947,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:1990145,GO:1990904,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 310.0
PJD3_k127_5353252_17 Sugar (and other) transporter - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002412 315.0
PJD3_k127_5353252_18 Predicted membrane protein (DUF2238) K08984 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 296.0
PJD3_k127_5353252_19 PFAM CBS domain K06189 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008244 289.0
PJD3_k127_5353252_2 - - - - 1.163e-275 895.0
PJD3_k127_5353252_20 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001162 280.0
PJD3_k127_5353252_21 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005537 267.0
PJD3_k127_5353252_22 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000001936 244.0
PJD3_k127_5353252_23 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000006265 239.0
PJD3_k127_5353252_24 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000006657 216.0
PJD3_k127_5353252_25 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000000000000000000000000000001409 215.0
PJD3_k127_5353252_26 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000000000002648 212.0
PJD3_k127_5353252_27 LysR family - - - 0.00000000000000000000000000000000000000000000000000000002266 209.0
PJD3_k127_5353252_28 - - - - 0.00000000000000000000000000000000000000000000000000000005321 200.0
PJD3_k127_5353252_29 Protein of unknown function - GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0042597,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000001463 223.0
PJD3_k127_5353252_3 PUA-like domain K00958 - 2.7.7.4 1.34e-270 842.0
PJD3_k127_5353252_30 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000004217 199.0
PJD3_k127_5353252_31 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000000000000000000004591 184.0
PJD3_k127_5353252_32 SufE protein probably involved in Fe-S center assembly K02426 - - 0.00000000000000000000000000000000000000000000000001362 185.0
PJD3_k127_5353252_33 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000002842 177.0
PJD3_k127_5353252_34 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000001008 168.0
PJD3_k127_5353252_35 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000000000000004473 163.0
PJD3_k127_5353252_36 cellular manganese ion homeostasis - - - 0.0000000000000000000000000000000000000000001131 165.0
PJD3_k127_5353252_37 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000000000000000004534 159.0
PJD3_k127_5353252_38 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000005254 156.0
PJD3_k127_5353252_39 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000005097 146.0
PJD3_k127_5353252_4 Belongs to the glutamate synthase family K22083 - 2.1.1.21 2.427e-251 783.0
PJD3_k127_5353252_40 glyoxalase K06996 - - 0.00000000000000000000000000000001255 130.0
PJD3_k127_5353252_41 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000192 120.0
PJD3_k127_5353252_42 MAPEG family - - - 0.00000000000000000000000000000199 126.0
PJD3_k127_5353252_43 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000000000009566 121.0
PJD3_k127_5353252_44 FR47-like protein - - - 0.00000000000000000000000000002764 122.0
PJD3_k127_5353252_45 - - - - 0.0000000000000000000000002958 108.0
PJD3_k127_5353252_46 - - - - 0.000000000000000000007111 101.0
PJD3_k127_5353252_47 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.00000000000000001889 88.0
PJD3_k127_5353252_48 Trm112p-like protein - - - 0.0000000000000003262 81.0
PJD3_k127_5353252_49 SlyX - - - 0.0000000000000005615 80.0
PJD3_k127_5353252_5 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.546e-247 776.0
PJD3_k127_5353252_51 Alpha/beta hydrolase family - - - 0.000000001873 66.0
PJD3_k127_5353252_52 Domain of unknown function (DUF4404) - - - 0.000000061 58.0
PJD3_k127_5353252_6 ABC transporter K15738 - - 7.249e-245 771.0
PJD3_k127_5353252_7 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 5.844e-197 626.0
PJD3_k127_5353252_8 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005929 604.0
PJD3_k127_5353252_9 ribonuclease, Rne Rng family K08301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004438 590.0
PJD3_k127_5353832_0 malic enzyme K00029 - 1.1.1.40 0.0 1023.0
PJD3_k127_5353832_1 4fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.378e-200 631.0
PJD3_k127_5356883_0 - - - - 0.0 1029.0
PJD3_k127_5356883_1 beta-galactosidase activity K01224 - 3.2.1.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 537.0
PJD3_k127_5356883_2 Glycosyl hydrolases family 17 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005021 434.0
PJD3_k127_5356883_3 helix_turn _helix lactose operon repressor K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001962 315.0
PJD3_k127_5356883_4 LysR family - - - 0.000000000000000000000000000000001398 137.0
PJD3_k127_5357766_0 and related enzymes K06132 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004386 589.0
PJD3_k127_5357766_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 384.0
PJD3_k127_5357766_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000001091 175.0
PJD3_k127_5357766_4 Belongs to the peptidase S41A family - - - 0.00000000000000000000000000007447 132.0
PJD3_k127_5357766_5 Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000539 122.0
PJD3_k127_5357766_6 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000004292 75.0
PJD3_k127_5375032_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18989 - - 0.0 1124.0
PJD3_k127_5375032_1 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06132 GO:0003674,GO:0003824,GO:0005575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030572,GO:0032048,GO:0032049,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0090483,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 377.0
PJD3_k127_5375032_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K18990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005751 263.0
PJD3_k127_5375032_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000007503 240.0
PJD3_k127_5375032_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000005464 232.0
PJD3_k127_5375032_5 D-arabinono-1,4-lactone oxidase - - - 0.0000000000000000000000000000000000000000002343 176.0
PJD3_k127_5375032_6 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000003046 143.0
PJD3_k127_5375032_7 POTRA domain TamA domain 1 K07277,K07278 - - 0.000000000000000000000000000648 126.0
PJD3_k127_5378742_0 3-hydroxyacyl-coa dehydrogenase K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.471e-208 668.0
PJD3_k127_5378742_1 Anthranilate synthase component I K01657,K01665 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 467.0
PJD3_k127_5378742_10 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000003447 180.0
PJD3_k127_5378742_11 Pilus assembly protein PilZ K02676 - - 0.00000000000000000000000000000000000000000000001039 173.0
PJD3_k127_5378742_12 ApbE family - - - 0.000000000000000000000000000000000000002478 154.0
PJD3_k127_5378742_13 Glutathione peroxidase - - - 0.00000000000000000000000000000000000006826 147.0
PJD3_k127_5378742_14 DNA polymerase III, delta' K02341 - 2.7.7.7 0.00000000000000000000000000000000005 146.0
PJD3_k127_5378742_15 Domain of unknown function (DUF4266) - - - 0.0000000000000000000000000242 109.0
PJD3_k127_5378742_16 MTH538 TIR-like domain (DUF1863) - - - 0.0000001463 60.0
PJD3_k127_5378742_2 Protein of unknown function (DUF3570) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 399.0
PJD3_k127_5378742_3 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 367.0
PJD3_k127_5378742_4 PFAM Glycerophosphoryl diester phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000434 338.0
PJD3_k127_5378742_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033817,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002748 324.0
PJD3_k127_5378742_6 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004642 314.0
PJD3_k127_5378742_7 PFAM Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002284 265.0
PJD3_k127_5378742_8 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000000000000000000000000000002583 232.0
PJD3_k127_5378742_9 COG0115 Branched-chain amino acid aminotransferase 4-amino-4-deoxychorismate lyase K02619 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008696,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0019842,GO:0030170,GO:0034641,GO:0036094,GO:0042558,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0070279,GO:0071704,GO:0097159,GO:1901360,GO:1901363,GO:1901564 4.1.3.38 0.000000000000000000000000000000000000000000000000008845 191.0
PJD3_k127_5383036_0 PFAM malic K00027,K00029 - 1.1.1.38,1.1.1.40 1.987e-215 682.0
PJD3_k127_5383036_1 CobW/HypB/UreG, nucleotide-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001705 550.0
PJD3_k127_5383036_10 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000005906 164.0
PJD3_k127_5383036_11 DnaK suppressor protein - - - 0.0000000000000000000000000000000000006332 141.0
PJD3_k127_5383036_12 COG0793 Periplasmic protease - - - 0.000000000000000000000000000000000001925 143.0
PJD3_k127_5383036_13 Cytochrome c - - - 0.00000000000000000000000000000002242 131.0
PJD3_k127_5383036_14 PFAM Forkhead-associated protein - - - 0.000000000000005072 87.0
PJD3_k127_5383036_15 response to cobalt ion - - - 0.00000000000003306 78.0
PJD3_k127_5383036_16 - - - - 0.00000000001635 70.0
PJD3_k127_5383036_17 - - - - 0.0001225 49.0
PJD3_k127_5383036_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 436.0
PJD3_k127_5383036_3 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 405.0
PJD3_k127_5383036_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004762 367.0
PJD3_k127_5383036_5 RNA pseudouridylate synthase K06177 - 5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 296.0
PJD3_k127_5383036_6 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009928 267.0
PJD3_k127_5383036_7 Belongs to the UPF0502 family K09915 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000002538 244.0
PJD3_k127_5383036_8 Putative zinc- or iron-chelating domain - - - 0.000000000000000000000000000000000000000000000000002549 186.0
PJD3_k127_5383036_9 DsrE/DsrF-like family - - - 0.00000000000000000000000000000000000000000000209 170.0
PJD3_k127_5403398_0 Cytochrome c - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 377.0
PJD3_k127_5403398_1 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.0000000000000000000000000000000000000000000000000000000000001762 219.0
PJD3_k127_5403398_2 PFAM major facilitator superfamily MFS_1 K06141 - - 0.00000000000000000000000000000000000000000000000000003251 203.0
PJD3_k127_5403398_3 Cytochrome C556 - - - 0.00000000000000000000004028 104.0
PJD3_k127_5428358_0 Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 419.0
PJD3_k127_5428358_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 GO:0000166,GO:0003674,GO:0003824,GO:0004353,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006970,GO:0006995,GO:0007154,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009642,GO:0009646,GO:0009651,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0016491,GO:0016638,GO:0016639,GO:0017076,GO:0019222,GO:0030554,GO:0031667,GO:0031668,GO:0031669,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0035639,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0050897,GO:0051171,GO:0051716,GO:0055114,GO:0065007,GO:0071496,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901698 1.4.1.3 0.000000000000000000000000000000000000000000000001217 178.0
PJD3_k127_5428358_2 AraC family transcriptional regulator - - - 0.0000000000002489 71.0
PJD3_k127_5433735_0 NHL repeat - - - 0.0000000000000000002636 102.0
PJD3_k127_5433735_1 Psort location Cytoplasmic, score 9.26 K01414 - 3.4.24.70 0.00000007335 54.0
PJD3_k127_5454221_0 (belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family) K03455,K11745,K11747 - - 2.736e-257 809.0
PJD3_k127_5454221_1 Flavin containing amine oxidoreductase - - - 3.107e-219 692.0
PJD3_k127_5454221_10 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000002068 237.0
PJD3_k127_5454221_11 Protein of unknown function (DUF1810) - - - 0.00000000000000000000000000000000000000000000006669 175.0
PJD3_k127_5454221_13 - - - - 0.000000006864 63.0
PJD3_k127_5454221_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 569.0
PJD3_k127_5454221_3 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009406 423.0
PJD3_k127_5454221_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 411.0
PJD3_k127_5454221_5 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006852 365.0
PJD3_k127_5454221_6 COG1233 Phytoene dehydrogenase and related proteins K10027,K10210 - 1.14.99.44,1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 320.0
PJD3_k127_5454221_7 Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host K05801 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0051087,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006008 268.0
PJD3_k127_5454221_8 aminotransferase K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000006518 265.0
PJD3_k127_5454221_9 Flavodoxin-like fold K00355,K11748 - 1.6.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000001609 263.0
PJD3_k127_5468108_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 2.422e-314 980.0
PJD3_k127_5468108_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 4.106e-310 959.0
PJD3_k127_5468108_10 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 327.0
PJD3_k127_5468108_11 Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 302.0
PJD3_k127_5468108_12 PFAM EAL domain K21025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005626 301.0
PJD3_k127_5468108_13 PFAM Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001961 268.0
PJD3_k127_5468108_14 Elongation factor P--(R)-beta-lysine ligase K04568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002772 273.0
PJD3_k127_5468108_15 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009030,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009229,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0042357,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0046872,GO:0051186,GO:0051188,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000003433 266.0
PJD3_k127_5468108_16 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001973 255.0
PJD3_k127_5468108_17 riboflavin synthase, alpha K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003611 252.0
PJD3_k127_5468108_18 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000001491 245.0
PJD3_k127_5468108_19 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005524,GO:0006355,GO:0008144,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0017076,GO:0019219,GO:0019222,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000126 228.0
PJD3_k127_5468108_2 ABC transporter - - - 1.161e-282 877.0
PJD3_k127_5468108_20 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000003515 221.0
PJD3_k127_5468108_21 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000002364 185.0
PJD3_k127_5468108_22 GAF domain-containing protein K08968 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016667,GO:0016671,GO:0033745,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.8.4.14 0.000000000000000000000000000000000000000000000000004359 185.0
PJD3_k127_5468108_23 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000000009194 176.0
PJD3_k127_5468108_24 Protein of unknown function (DUF3187) - - - 0.0000000000000000000000000000000000000000000006126 179.0
PJD3_k127_5468108_25 - - - - 0.000000000000000000000000000000000000000007482 162.0
PJD3_k127_5468108_26 PFAM electron transport protein SCO1 SenC K07152 - - 0.00000000000000000000000000000000000000008903 158.0
PJD3_k127_5468108_27 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000001051 134.0
PJD3_k127_5468108_28 Exonuclease VII small subunit K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.000000000000000227 81.0
PJD3_k127_5468108_29 Copper chaperone PCu(A)C K09796 - - 0.000000000000001748 81.0
PJD3_k127_5468108_3 Cysteine-rich domain - - - 7.238e-210 660.0
PJD3_k127_5468108_30 COG3170 Tfp pilus assembly protein FimV K08086 - - 0.0000001443 64.0
PJD3_k127_5468108_4 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0001505,GO:0003674,GO:0003824,GO:0004372,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006546,GO:0006563,GO:0006565,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009070,GO:0009071,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019264,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042133,GO:0042135,GO:0042136,GO:0042737,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0065007,GO:0065008,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.1.2.1 1.27e-206 649.0
PJD3_k127_5468108_5 amidohydrolase K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 592.0
PJD3_k127_5468108_6 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 473.0
PJD3_k127_5468108_7 PFAM histone deacetylase superfamily K04768 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007078 402.0
PJD3_k127_5468108_8 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 397.0
PJD3_k127_5468108_9 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 354.0
PJD3_k127_5536784_0 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.00000000000000000000000000002502 117.0
PJD3_k127_5536784_1 PFAM response regulator receiver K02477 - - 0.00000000005157 74.0
PJD3_k127_5548838_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K04090 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 352.0
PJD3_k127_5548838_1 helix_turn_helix ASNC type K03719 - - 0.000000000000000000000000000000000000000000000000000006699 195.0
PJD3_k127_5548838_2 SnoaL-like polyketide cyclase - - - 0.00000000000000000000000000000000000000000000003001 174.0
PJD3_k127_5676149_0 PFAM Na Picotransporter K03324 - - 4.853e-225 709.0
PJD3_k127_5676149_1 Peptidase M16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 461.0
PJD3_k127_5676149_2 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 445.0
PJD3_k127_5676149_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000003439 135.0
PJD3_k127_5676149_4 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain - - - 0.0000001058 56.0
PJD3_k127_5719414_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 1.871e-279 883.0
PJD3_k127_5719414_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 587.0
PJD3_k127_5719414_10 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 343.0
PJD3_k127_5719414_11 Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di-trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001714 281.0
PJD3_k127_5719414_12 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000003744 256.0
PJD3_k127_5719414_13 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002822 261.0
PJD3_k127_5719414_14 Belongs to the CDS family K00981 GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.41 0.0000000000000000000000000000000000000000000000000000001024 204.0
PJD3_k127_5719414_15 Belongs to the ArsC family - - - 0.0000000000000000000000000000001921 127.0
PJD3_k127_5719414_16 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000003048 106.0
PJD3_k127_5719414_2 Domain of unknown function (DUF3333) K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007711 527.0
PJD3_k127_5719414_3 COG0226 ABC-type phosphate transport system, periplasmic component K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005412 494.0
PJD3_k127_5719414_4 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009014,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009434 474.0
PJD3_k127_5719414_5 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 411.0
PJD3_k127_5719414_6 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000848 403.0
PJD3_k127_5719414_7 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 399.0
PJD3_k127_5719414_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007383 366.0
PJD3_k127_5719414_9 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001391 341.0
PJD3_k127_5904998_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006520,GO:0006541,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009064,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0016884,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.5.3 0.0 1547.0
PJD3_k127_5904998_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1035.0
PJD3_k127_5904998_10 Belongs to the short-chain dehydrogenases reductases (SDR) family K07124 - - 0.00006735 46.0
PJD3_k127_5904998_2 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005402 552.0
PJD3_k127_5904998_3 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 310.0
PJD3_k127_5904998_4 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005606 287.0
PJD3_k127_5904998_5 aldo-keto reductase (NADP) activity K05275 - 1.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000003943 271.0
PJD3_k127_5904998_6 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000000214 192.0
PJD3_k127_5904998_7 TIGRFAM Type VI secretion system, FHA K11913 - - 0.00000000000000000000000000000000000000003222 169.0
PJD3_k127_5904998_8 Domain of unknown function (DUF1820) - - - 0.0000000000000000000000000000000000001303 143.0
PJD3_k127_5904998_9 - - - - 0.0000002124 57.0
PJD3_k127_5929863_0 imidazolonepropionase activity K07221 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006058 434.0
PJD3_k127_5929863_1 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003501 270.0
PJD3_k127_5929863_2 - - - - 0.0000000000000000000000000000000000000000000000000000000002598 203.0
PJD3_k127_5929863_3 wide pore channel activity K07267 - - 0.000000000000000000000000000000000000000005153 159.0
PJD3_k127_5929863_4 - - - - 0.00000000000000000003418 90.0
PJD3_k127_5943051_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 5.947e-283 875.0
PJD3_k127_5943051_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009379,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051276,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1902494 3.6.4.12 2.688e-251 792.0
PJD3_k127_5943051_10 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 330.0
PJD3_k127_5943051_11 dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 312.0
PJD3_k127_5943051_12 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 316.0
PJD3_k127_5943051_13 PFAM YicC-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003773 288.0
PJD3_k127_5943051_14 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000007119 228.0
PJD3_k127_5943051_15 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.00000000000000000000000000000000000000000000000000000000000003874 224.0
PJD3_k127_5943051_16 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000000000000000000000000000000000000000000000000003258 203.0
PJD3_k127_5943051_17 Guanylate kinase homologues. K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000006093 205.0
PJD3_k127_5943051_18 Pilus assembly protein PilO K02664 - - 0.0000000000000000000000000000000000000000000000000000008985 198.0
PJD3_k127_5943051_19 COG0631 Serine threonine protein phosphatase K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000001791 188.0
PJD3_k127_5943051_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 1.25e-248 786.0
PJD3_k127_5943051_20 cytochrome c oxidase assembly protein K02258 - - 0.000000000000000000000000000000000000000000000003385 179.0
PJD3_k127_5943051_21 endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000001752 173.0
PJD3_k127_5943051_22 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000000004021 176.0
PJD3_k127_5943051_23 pilus assembly protein PilP K02665 - - 0.0000000000000000000000000000000000000000000003909 172.0
PJD3_k127_5943051_24 PFAM Fimbrial assembly K02663 - - 0.00000000000000000000000000000000000000000000209 170.0
PJD3_k127_5943051_25 50S ribosomal protein L31 K02909 - - 0.00000000000000000000000000000002683 129.0
PJD3_k127_5943051_26 Competence protein - - - 0.0000000000000000000000000000001888 131.0
PJD3_k127_5943051_27 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000007445 97.0
PJD3_k127_5943051_28 Heme copper-type cytochrome quinol oxidase subunit 3 K02276 - 1.9.3.1 0.00000000000002488 74.0
PJD3_k127_5943051_3 TIGRFAM penicillin-binding protein, 1A K05366 - 2.4.1.129,3.4.16.4 1.239e-219 711.0
PJD3_k127_5943051_4 type IV pilus secretin PilQ K02666 - - 9.048e-210 674.0
PJD3_k127_5943051_5 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.772e-194 614.0
PJD3_k127_5943051_6 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 417.0
PJD3_k127_5943051_7 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008181 412.0
PJD3_k127_5943051_8 Pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004605 389.0
PJD3_k127_5943051_9 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 350.0
PJD3_k127_5962673_0 Cytochrome c554 and c-prime - - - 8.299e-237 754.0
PJD3_k127_5962673_1 Participates in both transcription termination and antitermination K02600 - - 3.585e-220 694.0
PJD3_k127_5962673_10 Required for maturation of 30S ribosomal subunits K09748 GO:0000028,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000001726 160.0
PJD3_k127_5962673_11 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000000000000000000008075 108.0
PJD3_k127_5962673_2 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 5.804e-195 625.0
PJD3_k127_5962673_3 HI0933-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 594.0
PJD3_k127_5962673_4 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000963 376.0
PJD3_k127_5962673_5 PFAM Cytochrome b b6 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396 361.0
PJD3_k127_5962673_6 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K00187 - 1.2.7.1,1.2.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004273 329.0
PJD3_k127_5962673_7 KR domain K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001216 281.0
PJD3_k127_5962673_8 Uroporphyrinogen decarboxylase (URO-D) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001299 265.0
PJD3_k127_5962673_9 oxidoreductase activity, acting on diphenols and related substances as donors K02636 - 1.10.9.1 0.00000000000000000000000000000000000000000003184 169.0
PJD3_k127_5968533_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000001422 245.0
PJD3_k127_5968533_1 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000008817 238.0
PJD3_k127_5968533_2 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000573 213.0
PJD3_k127_5968533_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000003227 181.0
PJD3_k127_5968533_4 Protein of Unknown function (DUF2784) - - - 0.000000000000000000000000000000000000000000000003326 181.0
PJD3_k127_5968533_5 cellular manganese ion homeostasis - - - 0.000000000000000000000000000000000000000001003 162.0
PJD3_k127_5968533_6 Glyoxalase-like domain K06996 - - 0.0000000000000000000000000000000009149 133.0
PJD3_k127_5968533_7 Bacterial PH domain - - - 0.000000000000000000002589 99.0
PJD3_k127_5968533_8 Domain of unknown function (DU1801) - - - 0.0000000000000003099 80.0
PJD3_k127_5968533_9 - - - - 0.00002914 51.0
PJD3_k127_5969833_0 E COG1126 ABC-type polar amino acid transport system, ATPase component K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009921 439.0
PJD3_k127_5969833_1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 421.0
PJD3_k127_5969833_2 MlaD protein K06192 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 360.0
PJD3_k127_5969833_3 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002415 254.0
PJD3_k127_5969833_4 ABC-type transport auxiliary lipoprotein component - - - 0.000000000000000000000000000000000000000000000004188 179.0
PJD3_k127_5969833_5 - - - - 0.00000000000002105 76.0
PJD3_k127_5982372_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00171,K00172,K02573,K03737,K13795,K18930 - 1.2.7.1 9.334e-308 994.0
PJD3_k127_5982372_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 1.172e-283 891.0
PJD3_k127_5982372_10 Aldolase K01623 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004043 413.0
PJD3_k127_5982372_11 Fe-S cluster K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009625 410.0
PJD3_k127_5982372_12 Part of a membrane complex involved in electron transport K03613 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 328.0
PJD3_k127_5982372_13 Part of a membrane complex involved in electron transport K03617 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006525 308.0
PJD3_k127_5982372_14 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 294.0
PJD3_k127_5982372_15 Part of a membrane complex involved in electron transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002746 247.0
PJD3_k127_5982372_16 Protein of unknown function (DUF2892) - - - 0.000000000000000000000202 96.0
PJD3_k127_5982372_17 Outer membrane protein beta-barrel domain - - - 0.0000000000000000002702 96.0
PJD3_k127_5982372_18 - - - - 0.000000000000001953 83.0
PJD3_k127_5982372_2 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 6.752e-211 681.0
PJD3_k127_5982372_20 - - - - 0.0000001915 60.0
PJD3_k127_5982372_21 - - - - 0.00008087 49.0
PJD3_k127_5982372_3 Part of a membrane complex involved in electron transport K03615 - - 1.632e-197 624.0
PJD3_k127_5982372_4 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009489 571.0
PJD3_k127_5982372_5 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002704 490.0
PJD3_k127_5982372_6 Part of a membrane complex involved in electron transport K03614 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007298 466.0
PJD3_k127_5982372_7 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006732 458.0
PJD3_k127_5982372_8 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 458.0
PJD3_k127_5982372_9 Polyphosphate kinase 2 (PPK2) K22468 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 443.0
PJD3_k127_5985689_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 420.0
PJD3_k127_5993917_0 Metallopeptidase family M24 - - - 6.778e-197 623.0
PJD3_k127_6026651_0 Tetratricopeptide repeat - - - 3.06e-223 725.0
PJD3_k127_6026651_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 423.0
PJD3_k127_6026651_10 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000003471 147.0
PJD3_k127_6026651_11 Biopolymer transport protein ExbD/TolR - - - 0.000000000000000000000000000000000001875 143.0
PJD3_k127_6026651_12 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000003337 112.0
PJD3_k127_6026651_13 MAPEG family - - - 0.0000000000000000000000000159 115.0
PJD3_k127_6026651_14 TPR repeat - - - 0.00000000000000000000003599 108.0
PJD3_k127_6026651_15 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000001638 84.0
PJD3_k127_6026651_16 - - - - 0.0000000000000004419 85.0
PJD3_k127_6026651_2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004363 288.0
PJD3_k127_6026651_3 MotA/TolQ/ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002842 261.0
PJD3_k127_6026651_4 - - - - 0.000000000000000000000000000000000000000000000000000000000414 207.0
PJD3_k127_6026651_5 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000002745 202.0
PJD3_k127_6026651_6 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000007074 197.0
PJD3_k127_6026651_7 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.00000000000000000000000000000000000000000000000000001418 200.0
PJD3_k127_6026651_8 Biopolymer transport protein ExbD/TolR - - - 0.0000000000000000000000000000000000000000000005827 171.0
PJD3_k127_6026651_9 Uracil DNA glycosylase superfamily K03649 - 3.2.2.28 0.000000000000000000000000000000000000000000003397 169.0
PJD3_k127_6045527_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0030497,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 321.0
PJD3_k127_6045527_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 293.0
PJD3_k127_6045527_10 Type II secretion system (T2SS), protein N K02463 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.0005006 48.0
PJD3_k127_6045527_11 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02462 - - 0.0006272 49.0
PJD3_k127_6045527_2 General Secretion Pathway protein K02456 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.00000000000000000000000000000000000000000000000000000003205 201.0
PJD3_k127_6045527_3 Type II secretion system (T2SS), protein K K02460 - - 0.00000000000000000000000000000000000000000000000000007212 198.0
PJD3_k127_6045527_4 General secretion pathway protein J K02459 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015628,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0098776 - 0.00000000000000000000000000000000000004891 150.0
PJD3_k127_6045527_5 Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins K02461 - - 0.00000000000000000000000000000001343 142.0
PJD3_k127_6045527_6 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0050896,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000007943 126.0
PJD3_k127_6045527_7 Rhomboid family - - - 0.0000000000000000000000000000001319 131.0
PJD3_k127_6045527_8 General secretion pathway protein I K02458 GO:0002790,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0045184,GO:0046903,GO:0051179,GO:0051234,GO:0071702,GO:0071705 - 0.000000000000006644 84.0
PJD3_k127_6045527_9 general secretion pathway protein K02457,K02650 - - 0.000000001693 66.0
PJD3_k127_6046682_0 protease with the C-terminal PDZ domain - - - 3.609e-209 667.0
PJD3_k127_6046682_1 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 470.0
PJD3_k127_6046682_10 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000005242 181.0
PJD3_k127_6046682_11 General inhibitor of pancreatic serine proteases inhibits chymotrypsin, trypsin, elastases, factor X, kallikrein as well as a variety of other proteases K08276 GO:0003674,GO:0004857,GO:0004866,GO:0004867,GO:0005575,GO:0005623,GO:0008150,GO:0009892,GO:0010466,GO:0010605,GO:0010951,GO:0019222,GO:0030162,GO:0030234,GO:0030288,GO:0030313,GO:0030414,GO:0031323,GO:0031324,GO:0031975,GO:0032268,GO:0032269,GO:0042597,GO:0043086,GO:0044092,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0060255,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0080090,GO:0098772 - 0.00000000000000000000000000000000000000000139 164.0
PJD3_k127_6046682_12 Diacylglycerol kinase catalytic domain (presumed) - - - 0.0000000000000000000000000000000000000001534 161.0
PJD3_k127_6046682_13 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon K03524 - 6.3.4.15 0.0000000000000000000000000000000000002271 153.0
PJD3_k127_6046682_14 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000004988 144.0
PJD3_k127_6046682_15 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K01947,K03525 - 2.7.1.33,6.3.4.15 0.00000000000000000000000000000000001626 145.0
PJD3_k127_6046682_16 photosynthesis K02277 - 1.9.3.1 0.0000000000000000001814 92.0
PJD3_k127_6046682_17 - - - - 0.000000000000000006679 89.0
PJD3_k127_6046682_18 Sporulation related domain - - - 0.00000006015 63.0
PJD3_k127_6046682_19 - - - - 0.000003781 49.0
PJD3_k127_6046682_2 FtsX-like permease family K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 401.0
PJD3_k127_6046682_3 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003564 375.0
PJD3_k127_6046682_4 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 340.0
PJD3_k127_6046682_5 Biotin-lipoyl like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008472 336.0
PJD3_k127_6046682_6 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 315.0
PJD3_k127_6046682_7 Amidinotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006059 317.0
PJD3_k127_6046682_8 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000223 240.0
PJD3_k127_6046682_9 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000003478 190.0
PJD3_k127_6077656_0 Acyl-CoA dehydrogenase, middle domain K00253 - 1.3.8.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009038 596.0
PJD3_k127_6077656_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005385 528.0
PJD3_k127_6077656_2 fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003327 370.0
PJD3_k127_6077656_3 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000001509 169.0
PJD3_k127_6077656_4 translation initiation factor activity K06996 - - 0.00000000000000000000000000000000001372 139.0
PJD3_k127_6077656_5 Nitrogen regulatory protein P-II K04751,K04752 - - 0.00000000000001583 73.0
PJD3_k127_6101634_0 response regulator receiver K02487,K06596 - - 0.0 1103.0
PJD3_k127_6101634_1 PFAM Type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004048 568.0
PJD3_k127_6101634_10 adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008326 275.0
PJD3_k127_6101634_11 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002344 261.0
PJD3_k127_6101634_12 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000003568 246.0
PJD3_k127_6101634_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006243 248.0
PJD3_k127_6101634_14 COG1120 ABC-type cobalamin Fe3 -siderophores transport systems, ATPase components K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000000004851 240.0
PJD3_k127_6101634_15 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000005784 227.0
PJD3_k127_6101634_16 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000001109 228.0
PJD3_k127_6101634_17 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000000000000000000000000000000000000000000003446 222.0
PJD3_k127_6101634_18 response regulator receiver K02657 - - 0.00000000000000000000000000000000000000000000000000000000009652 206.0
PJD3_k127_6101634_19 Periplasmic binding protein K02016,K06858 - - 0.0000000000000000000000000000000000000000000000000000000006214 214.0
PJD3_k127_6101634_2 twitching motility protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 542.0
PJD3_k127_6101634_20 Serine aminopeptidase, S33 K07018 - - 0.00000000000000000000000000000000000000000000000000004268 194.0
PJD3_k127_6101634_21 cheY-homologous receiver domain K02658 - - 0.000000000000000000000000000000000000000001194 160.0
PJD3_k127_6101634_22 integral membrane protein K02221 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000008137 142.0
PJD3_k127_6101634_23 Membrane protein required for beta-lactamase induction K03807 - - 0.000000000000000000000000000000002178 141.0
PJD3_k127_6101634_24 Two component signalling adaptor domain K02659 - - 0.000000000000000000000000000000005086 134.0
PJD3_k127_6101634_25 Belongs to the bacterial histone-like protein family - - - 0.00000000000000000000000000000005569 128.0
PJD3_k127_6101634_26 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000002425 119.0
PJD3_k127_6101634_27 Domain of unknown function (DUF4426) - - - 0.0000000000000000000000009975 109.0
PJD3_k127_6101634_28 TIGRFAM TonB family protein K03832 - - 0.00000000000000000000000286 113.0
PJD3_k127_6101634_29 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.0000000000000000000000251 105.0
PJD3_k127_6101634_3 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 511.0
PJD3_k127_6101634_30 Two component signalling adaptor domain K06598 - - 0.000000000000000000001964 99.0
PJD3_k127_6101634_31 Belongs to the ompA family K03286 - - 0.0000000000000000003373 98.0
PJD3_k127_6101634_32 - - - - 0.000000000000000009732 95.0
PJD3_k127_6101634_33 COG1905 NADH ubiquinone oxidoreductase 24 kD subunit K00334,K03943 - 1.6.5.3,1.6.99.3 0.000000000008247 76.0
PJD3_k127_6101634_34 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000001635 74.0
PJD3_k127_6101634_4 PFAM Type II secretion system protein E K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007487 426.0
PJD3_k127_6101634_5 chemotaxis protein K02660 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 408.0
PJD3_k127_6101634_6 Belongs to the prokaryotic GSH synthase family K01920 GO:0003674,GO:0003824,GO:0004363,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0019184,GO:0034641,GO:0042398,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901564,GO:1901566,GO:1901576 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 381.0
PJD3_k127_6101634_7 Oxidoreductase FAD-binding domain K02823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 374.0
PJD3_k127_6101634_8 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009378 344.0
PJD3_k127_6101634_9 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007705 315.0
PJD3_k127_6117490_0 Acetolactate synthase K01652 - 2.2.1.6 3.129e-285 889.0
PJD3_k127_6117490_1 Acyltransferase - - - 3.128e-210 672.0
PJD3_k127_6117490_10 COG0811 Biopolymer transport proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 334.0
PJD3_k127_6117490_11 Secreted protein, containing von Willebrand factor (VWF) type - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 319.0
PJD3_k127_6117490_12 von Willebrand factor (VWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 295.0
PJD3_k127_6117490_13 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000008169 237.0
PJD3_k127_6117490_14 repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000004286 249.0
PJD3_k127_6117490_15 serine threonine protein kinase - - - 0.00000000000000000000000000000000000000000000000000000000000001459 223.0
PJD3_k127_6117490_16 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000000000000005846 221.0
PJD3_k127_6117490_17 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000007958 198.0
PJD3_k127_6117490_18 - - - - 0.000000000000000000000000000000000000000000000004791 189.0
PJD3_k127_6117490_19 acetolactate synthase, small K01653 - 2.2.1.6 0.000000000000000000000000000000000000006768 151.0
PJD3_k127_6117490_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006957 544.0
PJD3_k127_6117490_20 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000000000000000000000000000000009123 138.0
PJD3_k127_6117490_21 Belongs to the ompA family - - - 0.00000000000000000000008527 108.0
PJD3_k127_6117490_22 - - - - 0.000000001939 64.0
PJD3_k127_6117490_23 - - - - 0.00004131 49.0
PJD3_k127_6117490_3 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 547.0
PJD3_k127_6117490_4 Zn-dependent protease with chaperone function K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 524.0
PJD3_k127_6117490_5 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 515.0
PJD3_k127_6117490_6 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009404 480.0
PJD3_k127_6117490_7 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004378 402.0
PJD3_k127_6117490_8 Threo-3-hydroxyaspartate ammonia-lyase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 379.0
PJD3_k127_6117490_9 PFAM MscS Mechanosensitive ion channel K16052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005363 343.0
PJD3_k127_6132098_0 Zinc carboxypeptidase - - - 5.947e-254 813.0
PJD3_k127_6132098_1 PFAM peptidase M3A and M3B, thimet oligopeptidase F K01414 - 3.4.24.70 1.195e-210 674.0
PJD3_k127_6132098_10 Uncharacterized protein family UPF0029 - - - 0.000000000000000000000000000000000000000000000000000000000006808 210.0
PJD3_k127_6132098_11 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000001405 171.0
PJD3_k127_6132098_12 - - - - 0.0000000000000000000000000000000000001914 152.0
PJD3_k127_6132098_14 Protein of unknown function (DUF3379) - - - 0.0000000000007022 78.0
PJD3_k127_6132098_15 - - - - 0.00008364 53.0
PJD3_k127_6132098_16 Dihydrodipicolinate reductase, N-terminus K21672 - 1.4.1.12,1.4.1.26 0.0001859 46.0
PJD3_k127_6132098_17 - - - - 0.0008077 46.0
PJD3_k127_6132098_2 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 554.0
PJD3_k127_6132098_3 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 481.0
PJD3_k127_6132098_4 PFAM Endonuclease Exonuclease phosphatase K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 358.0
PJD3_k127_6132098_5 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 318.0
PJD3_k127_6132098_6 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 297.0
PJD3_k127_6132098_7 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000166,GO:0003674,GO:0003824,GO:0004764,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0032787,GO:0036094,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006986 285.0
PJD3_k127_6132098_8 DNA-3-methyladenine glycosylase I K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000003282 267.0
PJD3_k127_6132098_9 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000007256 267.0
PJD3_k127_6132947_0 AAA ATPase, central domain protein K07478 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003945 595.0
PJD3_k127_6132947_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007989 591.0
PJD3_k127_6132947_2 Tetratricopeptide repeat - - - 0.00000000003579 66.0
PJD3_k127_6159336_0 Belongs to the 'phage' integrase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 574.0
PJD3_k127_6159336_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 521.0
PJD3_k127_6159336_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 519.0
PJD3_k127_6159336_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 481.0
PJD3_k127_6159336_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006536,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008883,GO:0009058,GO:0009064,GO:0009987,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019353,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0033526,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046148,GO:0046483,GO:0046501,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 379.0
PJD3_k127_6159336_5 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000001263 255.0
PJD3_k127_6159336_6 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000006508 232.0
PJD3_k127_6159336_7 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000005862 240.0
PJD3_k127_6159336_8 UPF0126 domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000001232 205.0
PJD3_k127_6159336_9 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.0000000000000000000000000000000001324 140.0
PJD3_k127_6168164_0 Histidine kinase - - - 6.618e-318 1010.0
PJD3_k127_6168164_1 Sodium:solute symporter family K14393 - - 5.409e-310 956.0
PJD3_k127_6168164_2 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01895,K01908 GO:0003674,GO:0003824,GO:0003987,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046950,GO:0046951,GO:0070013,GO:0071704,GO:1901568,GO:1901570,GO:1901576,GO:1902224 6.2.1.1,6.2.1.17 3.12e-302 937.0
PJD3_k127_6168164_3 Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1 K00294 GO:0003674,GO:0003824,GO:0003842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006562,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0010133,GO:0016054,GO:0016491,GO:0016645,GO:0016646,GO:0019752,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055114,GO:0071704,GO:0072593,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.2.1.88 3.349e-199 635.0
PJD3_k127_6168164_4 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 300.0
PJD3_k127_6168164_5 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002382 251.0
PJD3_k127_6168164_6 - - - - 0.0000000000000000000000000000000000003739 145.0
PJD3_k127_6168164_7 membrane - - - 0.0000000000000000000000000000000003843 132.0
PJD3_k127_6195123_0 PFAM Sulfotransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008595 329.0
PJD3_k127_6195123_1 wide pore channel activity K07267 - - 0.000000000000000000000000000000001029 135.0
PJD3_k127_6195123_3 Carbohydrate-selective porin OprB K07267 - - 0.00002976 46.0
PJD3_k127_6205298_0 COG2303 Choline dehydrogenase and related flavoproteins K06151 - 1.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003587 589.0
PJD3_k127_6205298_1 Aldehyde dehydrogenase (NAD) family protein K13922 - 1.2.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 454.0
PJD3_k127_6205298_10 Ethanolamine utilisation protein EutN/carboxysome K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.00000000000000003315 85.0
PJD3_k127_6205298_11 Ethanolamine utilisation protein EutN/carboxysome - - - 0.0000000000108 65.0
PJD3_k127_6205298_2 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 350.0
PJD3_k127_6205298_3 COG0524 Sugar kinases, ribokinase family K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 307.0
PJD3_k127_6205298_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004555 250.0
PJD3_k127_6205298_5 Subtilisin-like serine - - - 0.00000000000000000000000000000000000000000000000000008549 198.0
PJD3_k127_6205298_6 TIGRFAM endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000009231 166.0
PJD3_k127_6205298_7 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000001641 117.0
PJD3_k127_6205298_8 Ethanolamine utilisation protein EutN/carboxysome - - - 0.00000000000000000002468 94.0
PJD3_k127_6205298_9 Microcompartments protein - - - 0.000000000000000000571 97.0
PJD3_k127_6230095_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1345.0
PJD3_k127_6230095_1 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1261.0
PJD3_k127_6230095_10 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009702 548.0
PJD3_k127_6230095_11 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006575 532.0
PJD3_k127_6230095_12 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005011 457.0
PJD3_k127_6230095_13 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000845 445.0
PJD3_k127_6230095_14 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 440.0
PJD3_k127_6230095_15 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003414 449.0
PJD3_k127_6230095_16 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003559 447.0
PJD3_k127_6230095_17 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0034641,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 431.0
PJD3_k127_6230095_18 Lipoprotein releasing system transmembrane protein K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006963 418.0
PJD3_k127_6230095_19 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 402.0
PJD3_k127_6230095_2 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 1.515e-307 957.0
PJD3_k127_6230095_20 DNA internalization-related competence protein ComEC Rec2 K02238 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003829 391.0
PJD3_k127_6230095_21 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 362.0
PJD3_k127_6230095_22 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005488 361.0
PJD3_k127_6230095_23 Lipoprotein releasing system, transmembrane protein K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009172 354.0
PJD3_k127_6230095_24 COG0568 DNA-directed RNA polymerase, sigma subunit K03087 GO:0000988,GO:0000990,GO:0001000,GO:0001121,GO:0001123,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 341.0
PJD3_k127_6230095_25 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 330.0
PJD3_k127_6230095_26 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042802,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 325.0
PJD3_k127_6230095_27 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 318.0
PJD3_k127_6230095_28 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004617 328.0
PJD3_k127_6230095_29 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009898,GO:0009987,GO:0016020,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019843,GO:0019897,GO:0019898,GO:0022613,GO:0031234,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0046777,GO:0070181,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:1901265,GO:1901363,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 319.0
PJD3_k127_6230095_3 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 7.964e-300 929.0
PJD3_k127_6230095_30 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 321.0
PJD3_k127_6230095_31 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 292.0
PJD3_k127_6230095_32 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005484 275.0
PJD3_k127_6230095_33 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008755 275.0
PJD3_k127_6230095_34 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000001357 270.0
PJD3_k127_6230095_35 F plasmid transfer operon, TraF, protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002298 274.0
PJD3_k127_6230095_36 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000431 259.0
PJD3_k127_6230095_37 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005107 260.0
PJD3_k127_6230095_38 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009148 252.0
PJD3_k127_6230095_39 SNARE associated Golgi protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000002508 240.0
PJD3_k127_6230095_4 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 1.038e-246 772.0
PJD3_k127_6230095_40 Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine K19696 - 2.4.2.44 0.000000000000000000000000000000000000000000000000000000000000000000005739 242.0
PJD3_k127_6230095_41 Belongs to the peptidase S26 family K03100 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000001909 240.0
PJD3_k127_6230095_42 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000002117 228.0
PJD3_k127_6230095_43 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000004676 214.0
PJD3_k127_6230095_44 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000009215 189.0
PJD3_k127_6230095_45 COG0739 Membrane proteins related to metalloendopeptidases K06194,K12943 GO:0000920,GO:0001896,GO:0005575,GO:0005623,GO:0008150,GO:0008219,GO:0009279,GO:0009987,GO:0012501,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0032153,GO:0042221,GO:0042493,GO:0043085,GO:0044093,GO:0044462,GO:0044464,GO:0050790,GO:0050896,GO:0051301,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071944 - 0.000000000000000000000000000000000000000000000000629 184.0
PJD3_k127_6230095_46 PFAM MucB RseB K03598 - - 0.00000000000000000000000000000000000000000000001567 183.0
PJD3_k127_6230095_47 Smr protein - - - 0.0000000000000000000000000000000000002116 147.0
PJD3_k127_6230095_48 succinate dehydrogenase K00241 - - 0.000000000000000000000000000000000001886 141.0
PJD3_k127_6230095_49 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000000001477 136.0
PJD3_k127_6230095_5 of the RND superfamily K07003 - - 3.559e-236 746.0
PJD3_k127_6230095_50 protein conserved in bacteria K09928 - - 0.0000000000000000000000000000000001664 138.0
PJD3_k127_6230095_51 Succinate dehydrogenase, hydrophobic anchor subunit K00242 - - 0.000000000000000000000000000001874 127.0
PJD3_k127_6230095_52 Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication K06980 GO:0003674,GO:0005488,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016226,GO:0019842,GO:0022607,GO:0031163,GO:0031406,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0071840,GO:0072341,GO:0097159,GO:1901363 - 0.0000000000000000000000000003059 125.0
PJD3_k127_6230095_53 Belongs to the skp family K06142 - - 0.000000000000000000000003277 108.0
PJD3_k127_6230095_54 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000005181 106.0
PJD3_k127_6230095_55 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000005054 97.0
PJD3_k127_6230095_56 protein conserved in bacteria - - - 0.0000000000000000002491 99.0
PJD3_k127_6230095_57 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.000000000000000002009 88.0
PJD3_k127_6230095_58 - - - - 0.00000000000000004017 85.0
PJD3_k127_6230095_59 Diguanylate cyclase - - - 0.00000000000000007098 92.0
PJD3_k127_6230095_6 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.355e-223 703.0
PJD3_k127_6230095_60 Peptidoglycan-binding protein, CsiV - - - 0.00000000000001111 83.0
PJD3_k127_6230095_61 Flavinator of succinate dehydrogenase K09159 - - 0.000000000000375 74.0
PJD3_k127_6230095_62 Domain of unknown function (DUF4845) - - - 0.0000000000003921 75.0
PJD3_k127_6230095_63 Glutaredoxin-like domain (DUF836) - - - 0.00000000003117 66.0
PJD3_k127_6230095_64 - - - - 0.00000000004749 64.0
PJD3_k127_6230095_65 Protein of unknown function (DUF1674) - - - 0.0000000004745 62.0
PJD3_k127_6230095_66 Negative regulator of sigma E activity K03597 - - 0.0000001495 60.0
PJD3_k127_6230095_7 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 8.624e-199 647.0
PJD3_k127_6230095_8 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 572.0
PJD3_k127_6230095_9 COG0608 Single-stranded DNA-specific exonuclease K07462 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008297,GO:0008409,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0033554,GO:0034641,GO:0035312,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0045145,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 573.0
PJD3_k127_6254604_0 acyl-CoA dehydrogenase K06445 GO:0003674,GO:0003824,GO:0003995,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016020,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0071944,GO:0072329,GO:1901575 - 5.265e-286 902.0
PJD3_k127_6254604_1 synthase K01641,K15311 - 2.3.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005755 564.0
PJD3_k127_6254604_10 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000000000000001555 173.0
PJD3_k127_6254604_11 Domain of unknown function (DUF4399) - - - 0.0000000000000000000000000000000000000000002237 163.0
PJD3_k127_6254604_12 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.000000000000000000000000000000000000000009226 157.0
PJD3_k127_6254604_13 - K01992 - - 0.0000000000000000000000000000002472 135.0
PJD3_k127_6254604_14 Protein of unknown function (DUF3667) - - - 0.0000000000000000000000000000003485 136.0
PJD3_k127_6254604_15 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000000000000000000597 110.0
PJD3_k127_6254604_16 stress-responsive transcriptional regulator K03973 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0019222,GO:0044464,GO:0048518,GO:0050789,GO:0060255,GO:0065007,GO:0071944 - 0.000000000001693 72.0
PJD3_k127_6254604_17 - - - - 0.0000001995 58.0
PJD3_k127_6254604_18 PspC domain K03973 - - 0.000000623 55.0
PJD3_k127_6254604_2 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 530.0
PJD3_k127_6254604_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009987,GO:0015980,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030060,GO:0034641,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072350,GO:0072524,GO:1901360,GO:1901564 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 503.0
PJD3_k127_6254604_4 sensor diguanylate cyclase phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007753 447.0
PJD3_k127_6254604_5 operon transcriptional activator K03974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003045 400.0
PJD3_k127_6254604_6 Hydroxymethylglutaryl-coenzyme A reductase K00054 - 1.1.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 392.0
PJD3_k127_6254604_7 abc transporter atp-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 374.0
PJD3_k127_6254604_8 PFAM PspA IM30 family protein K03969 GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006950,GO:0008150,GO:0008289,GO:0009266,GO:0009271,GO:0009408,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009889,GO:0009898,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019897,GO:0019898,GO:0031234,GO:0031323,GO:0031326,GO:0042802,GO:0043167,GO:0043168,GO:0043207,GO:0043433,GO:0044092,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0060187,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098552,GO:0098562,GO:0098586,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000000000000000000000003674 238.0
PJD3_k127_6254604_9 Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP) K01823 GO:0003674,GO:0003824,GO:0004452,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016853,GO:0016860,GO:0016863,GO:0019637,GO:0033554,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046490,GO:0050896,GO:0051716,GO:0071704,GO:0090407,GO:1901576 5.3.3.2 0.0000000000000000000000000000000000000000000000000000000000003369 219.0
PJD3_k127_6258805_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 9.943e-222 701.0
PJD3_k127_6258805_1 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 407.0
PJD3_k127_6258805_2 MOSC domain - - - 0.000000000000000000000000000000000000000000000000000000003111 205.0
PJD3_k127_6258863_0 Cystathionine beta-synthase K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003847 594.0
PJD3_k127_6258863_1 COG0626 Cystathionine beta-lyases cystathionine gamma-synthases K01758 - 4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 550.0
PJD3_k127_6258863_2 SnoaL-like polyketide cyclase - - - 0.000000000000000000000000000000000000000000003215 173.0
PJD3_k127_6258863_3 - - - - 0.0000000000000000000000000000000000000000006934 161.0
PJD3_k127_6258863_4 Helix-turn-helix XRE-family like proteins K07729 - - 0.000000000000000000000000001857 113.0
PJD3_k127_6258863_5 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000003646 95.0
PJD3_k127_6258863_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564 2.1.1.297 0.00000000000000000001675 94.0
PJD3_k127_6262343_0 Co Zn Cd efflux system component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 305.0
PJD3_k127_6262343_1 Multicopper - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009818 314.0
PJD3_k127_6326416_0 Peptidase M64 N-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 561.0
PJD3_k127_6326416_1 Endonuclease Exonuclease phosphatase K07004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 507.0
PJD3_k127_6326416_10 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009269 284.0
PJD3_k127_6326416_11 PFAM NAD dependent epimerase dehydratase family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004653 285.0
PJD3_k127_6326416_12 MacB-like periplasmic core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001543 232.0
PJD3_k127_6326416_13 Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity K01118 - - 0.00000000000000000000000000000000000000000000000000000000008953 211.0
PJD3_k127_6326416_14 CAAX protease self-immunity - - - 0.0000000000000000000000000000000000000000156 166.0
PJD3_k127_6326416_15 - - - - 0.00000000000000000000000000000000000006691 150.0
PJD3_k127_6326416_16 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000008954 132.0
PJD3_k127_6326416_17 YhhN family - - - 0.0000000000000000000000000000006357 130.0
PJD3_k127_6326416_18 - - - - 0.000000000000000000000000005157 115.0
PJD3_k127_6326416_19 - - - - 0.000000000000000000001676 102.0
PJD3_k127_6326416_2 ABC-type transport system, involved in lipoprotein release, permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 473.0
PJD3_k127_6326416_20 Acetyltransferase (GNAT) domain - - - 0.0000004232 51.0
PJD3_k127_6326416_21 aminopeptidase N - - - 0.00001477 57.0
PJD3_k127_6326416_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002544 418.0
PJD3_k127_6326416_4 Transcriptional regulator, LysR K10918,K18900 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 336.0
PJD3_k127_6326416_5 Alpha beta hydrolase K18092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 314.0
PJD3_k127_6326416_6 amine dehydrogenase activity K17285 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 317.0
PJD3_k127_6326416_7 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 302.0
PJD3_k127_6326416_8 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 296.0
PJD3_k127_6326416_9 AI-2E family transporter K11744 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0009372,GO:0009987,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0044764,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006936 291.0
PJD3_k127_6337744_0 Domain of unknown function (DUF5117) - - - 5.959e-279 882.0
PJD3_k127_6337744_1 ABC transporter K06158 - - 3.656e-210 670.0
PJD3_k127_6337744_2 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0005575,GO:0005623,GO:0009279,GO:0016020,GO:0019867,GO:0030312,GO:0030313,GO:0031975,GO:0044462,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 424.0
PJD3_k127_6337744_3 VIT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 321.0
PJD3_k127_6337744_4 Adenylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009974 317.0
PJD3_k127_6337744_5 Acetyl-coenzyme A transporter 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000001822 257.0
PJD3_k127_6337744_6 Transcription factor zinc-finger - - - 0.00000000000000000000000000001262 136.0
PJD3_k127_6380224_0 BNR Asp-box repeat - - - 0.0 1041.0
PJD3_k127_6380224_1 Amidohydrolase family - - - 2.687e-221 695.0
PJD3_k127_6380224_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000002095 95.0
PJD3_k127_6433952_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008928 395.0
PJD3_k127_6433952_1 Nucleotidyl transferase - - - 0.0000000000000000000000000000000000000000000000000000006347 203.0
PJD3_k127_6433952_2 Phosphate-selective porin O and P K07221 - - 0.0000000000000000000000000000000000000831 155.0
PJD3_k127_6433952_3 ABC transporter K06147 - - 0.0000000000000000001965 104.0
PJD3_k127_6433952_4 Histidine kinase - - - 0.0000003075 52.0
PJD3_k127_6462168_0 endonuclease activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005081 372.0
PJD3_k127_6462168_1 serine-type peptidase activity - - - 0.00000000004353 69.0
PJD3_k127_64976_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 1.844e-241 753.0
PJD3_k127_64976_1 DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation K05592 - 3.6.4.13 1.348e-229 725.0
PJD3_k127_64976_10 - - - - 0.000000000000000000000000000000000001553 145.0
PJD3_k127_64976_11 Beta-glucanase Beta-glucan synthetase - - - 0.000000000000000000000000006029 128.0
PJD3_k127_64976_12 domain, Protein - - - 0.00000002256 63.0
PJD3_k127_64976_2 PFAM Mandelate racemase muconate lactonizing enzyme, C-terminal domain K21624 GO:0000287,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0016597,GO:0016829,GO:0016835,GO:0016836,GO:0019752,GO:0031406,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046872,GO:0050896,GO:0051716,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:1901564,GO:1901605,GO:1901698,GO:1901699,GO:1901700,GO:1901701 4.2.1.171 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 528.0
PJD3_k127_64976_3 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002643 503.0
PJD3_k127_64976_4 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004216 425.0
PJD3_k127_64976_5 hemolysin activation secretion protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003467 408.0
PJD3_k127_64976_6 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 316.0
PJD3_k127_64976_7 COG0457 FOG TPR repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000004381 255.0
PJD3_k127_64976_8 TIGRFAM cytochrome c nitrate reductase, small subunit K15876 - - 0.0000000000000000000000000000000000000000000000000000000000000009477 228.0
PJD3_k127_64976_9 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000009003 186.0
PJD3_k127_6498152_0 PFAM AMP-dependent synthetase and ligase K00666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 555.0
PJD3_k127_6498152_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 419.0
PJD3_k127_6498152_2 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009585 305.0
PJD3_k127_6498152_3 PFAM Cytochrome P450 K14338 - 1.14.14.1,1.6.2.4 0.000000000000000000000000000000000000000000000000000000000000000005469 238.0
PJD3_k127_6498152_4 Domain of unknown function (DUF374) - - - 0.000000000000000000000000000000000000000000000001221 183.0
PJD3_k127_6498152_5 Protein of unknown function (DUF3108) - - - 0.00000000000001387 82.0
PJD3_k127_6508644_0 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 405.0
PJD3_k127_6508644_1 - K07221 - - 0.0002762 46.0
PJD3_k127_663810_0 Metallo-beta-lactamase superfamily K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882 333.0
PJD3_k127_663810_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004624 273.0
PJD3_k127_663810_2 Alpha/beta hydrolase of unknown function (DUF900) - - - 0.0000000000000000000000000000000000000000000000000000000000000000002945 244.0
PJD3_k127_663810_3 Predicted periplasmic protein (DUF2092) - - - 0.000000000000000000000000000005699 129.0
PJD3_k127_663810_4 long-chain fatty acid transport protein - - - 0.0000000000000001112 89.0
PJD3_k127_663810_5 Bacterial regulatory proteins, tetR family - - - 0.000000000002879 74.0
PJD3_k127_663810_6 PFAM Phosphate-selective porin O and P K07221 - - 0.0000004505 60.0
PJD3_k127_672850_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 479.0
PJD3_k127_672850_1 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000005313 225.0
PJD3_k127_672850_2 histidine kinase A domain protein - - - 0.00000000000001182 85.0
PJD3_k127_672850_3 GGDEF domain - - - 0.00001512 48.0
PJD3_k127_684513_0 TonB-dependent receptor plug K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002952 598.0
PJD3_k127_684513_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005956 580.0
PJD3_k127_684513_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 398.0
PJD3_k127_684513_3 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 286.0
PJD3_k127_684513_4 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000002039 255.0
PJD3_k127_684513_5 nicotinamide mononucleotide transporter K03811 - - 0.000000000000000000000000000000000000000000000000000000003646 204.0
PJD3_k127_684513_6 choline kinase involved in LPS biosynthesis - - - 0.000000000000000000000006566 112.0
PJD3_k127_684513_7 YKOF-related Family - - - 0.0000000000000001174 83.0
PJD3_k127_684669_0 alkyl hydroperoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 304.0
PJD3_k127_684669_1 long-chain fatty acid transporting porin activity K07267 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009175 258.0
PJD3_k127_684669_2 Part of the ABC transporter complex PstSACB involved in phosphate import - - - 0.00000000000000000000000000000000000001814 149.0
PJD3_k127_684669_4 Aldo/keto reductase family K19265 - - 0.000000000001713 70.0
PJD3_k127_684669_5 Protein of unknown function (DUF3012) - - - 0.000000000004861 68.0
PJD3_k127_697743_0 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 6.399e-222 719.0
PJD3_k127_697743_1 Protein of unknown function (DUF3570) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 402.0
PJD3_k127_697743_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006518 269.0
PJD3_k127_697743_3 COG3103 SH3 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001015 271.0
PJD3_k127_697743_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000002099 218.0
PJD3_k127_697743_5 Domain of unknown function (DUF4266) - - - 0.00000000000000000000000003857 111.0
PJD3_k127_711058_0 epimerase - - - 0.000000000000000000000000000000000000000000001456 176.0
PJD3_k127_711058_1 Protein of unknown function (DUF3667) - - - 0.00000000000000000000000000000003256 136.0
PJD3_k127_711058_2 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000003644 83.0
PJD3_k127_734159_0 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 437.0
PJD3_k127_734159_1 Belongs to the GST superfamily K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 292.0
PJD3_k127_734159_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000444 134.0
PJD3_k127_734159_3 PFAM regulatory protein TetR - - - 0.00000002996 63.0
PJD3_k127_744605_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 3.725e-272 872.0
PJD3_k127_744605_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 443.0
PJD3_k127_744605_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.00000000000000000000000000000000000000000000000000000000005407 207.0
PJD3_k127_744605_3 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000004927 172.0
PJD3_k127_744605_4 Tellurite resistance protein TerB - - - 0.0000000000000000000000000002657 119.0
PJD3_k127_744605_5 - - - - 0.0000000000000000000000007107 113.0
PJD3_k127_786165_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 584.0
PJD3_k127_786165_1 mechanosensitive ion channel K05802 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 502.0
PJD3_k127_786165_10 (twin-arginine translocation) pathway signal - - - 0.0000000000000000000000000007673 122.0
PJD3_k127_786165_11 Transcriptional regulator - - - 0.000000000000000000000000001245 123.0
PJD3_k127_786165_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005496 436.0
PJD3_k127_786165_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 381.0
PJD3_k127_786165_4 4Fe-4S single cluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 359.0
PJD3_k127_786165_5 Coenzyme A transferase K01027,K01031 - 2.8.3.5,2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 334.0
PJD3_k127_786165_6 Coenzyme A transferase K01032 - 2.8.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 330.0
PJD3_k127_786165_7 AsmA family K07290 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005049 346.0
PJD3_k127_786165_8 MltA-interacting protein MipA K07274 - - 0.0000000000000000000000000000000000000000000000000000000003871 220.0
PJD3_k127_786165_9 Protein of unknown function (DUF3313) - - - 0.0000000000000000000000000000000000000000000002037 175.0
PJD3_k127_804480_0 Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella K18691 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008933,GO:0009056,GO:0009057,GO:0009253,GO:0009279,GO:0016020,GO:0016740,GO:0016757,GO:0019867,GO:0030203,GO:0030312,GO:0030313,GO:0031975,GO:0043170,GO:0044462,GO:0044464,GO:0061783,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 433.0
PJD3_k127_804480_1 - - - - 0.0000000000000000000000000000000000003098 145.0
PJD3_k127_804480_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000004779 124.0
PJD3_k127_833199_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 1.784e-234 741.0
PJD3_k127_833199_1 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 334.0
PJD3_k127_833199_2 Menaquinol oxidoreductase complex Cbc4, cytochrome c subunit - - - 0.0000000000000000000000000000000000002929 144.0
PJD3_k127_83842_0 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1118.0
PJD3_k127_83842_1 TIGRFAM FeS assembly protein SufB K09014 - - 3.337e-266 824.0
PJD3_k127_83842_10 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 501.0
PJD3_k127_83842_11 COG0616 Periplasmic serine proteases (ClpP class) K04773 GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0016020,GO:0016021,GO:0016485,GO:0016787,GO:0019538,GO:0031224,GO:0031226,GO:0034641,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 489.0
PJD3_k127_83842_12 CBS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 479.0
PJD3_k127_83842_13 pyrroloquinoline quinone binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009569 452.0
PJD3_k127_83842_14 FeS assembly ATPase SufC K09013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0071840 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003463 371.0
PJD3_k127_83842_15 PFAM ABC transporter K02065 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 338.0
PJD3_k127_83842_16 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 332.0
PJD3_k127_83842_17 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004648 329.0
PJD3_k127_83842_18 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 317.0
PJD3_k127_83842_19 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 332.0
PJD3_k127_83842_2 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 1.922e-234 747.0
PJD3_k127_83842_20 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 306.0
PJD3_k127_83842_21 phosphatase K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 291.0
PJD3_k127_83842_22 Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000014 299.0
PJD3_k127_83842_23 cAMP phosphodiesterases class-II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006545 265.0
PJD3_k127_83842_24 Permease MlaE K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005905 263.0
PJD3_k127_83842_25 TIGRFAM FeS assembly SUF system protein SufT - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009697 258.0
PJD3_k127_83842_26 TRAP transporter T-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000004332 241.0
PJD3_k127_83842_27 assembly protein SufD K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000355 243.0
PJD3_k127_83842_28 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000000000000000000000000000000000000000000001443 237.0
PJD3_k127_83842_29 Peroxiredoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000003513 220.0
PJD3_k127_83842_3 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 583.0
PJD3_k127_83842_30 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000003897 222.0
PJD3_k127_83842_31 (FHA) domain - - - 0.000000000000000000000000000000000000000000000000000000000003537 218.0
PJD3_k127_83842_32 PFAM VacJ family lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000227 211.0
PJD3_k127_83842_33 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000000000000001005 199.0
PJD3_k127_83842_34 PFAM Amino acid-binding ACT K03567 - - 0.00000000000000000000000000000000000000000000000000005414 192.0
PJD3_k127_83842_35 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000008513 188.0
PJD3_k127_83842_36 binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000001021 178.0
PJD3_k127_83842_37 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000000000000000000000000000001442 171.0
PJD3_k127_83842_38 ABC-type transport system involved in resistance to organic solvents auxiliary component K07323 - - 0.000000000000000000000000000000000000000006438 161.0
PJD3_k127_83842_39 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.00000000000000000000000000000000000000004555 156.0
PJD3_k127_83842_4 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 - 2.3.1.29,2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 567.0
PJD3_k127_83842_40 PFAM Phosphoglycerate mutase K08296 - - 0.0000000000000000000000000000000000000005572 153.0
PJD3_k127_83842_41 transport system permease component - - - 0.00000000000000000000000000000000000005893 153.0
PJD3_k127_83842_42 Transcriptional regulator - - - 0.0000000000000000000000000000000000003205 148.0
PJD3_k127_83842_43 NifU-like N terminal domain - - - 0.000000000000000000000000000000000004391 145.0
PJD3_k127_83842_44 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0000028,GO:0000217,GO:0000400,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016787,GO:0016788,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000124 136.0
PJD3_k127_83842_45 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000000000000000000003189 134.0
PJD3_k127_83842_46 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000905 99.0
PJD3_k127_83842_47 membrane - - - 0.00000000000002173 85.0
PJD3_k127_83842_48 NTP binding protein (Contains STAS domain) K07122 - - 0.000000000004869 70.0
PJD3_k127_83842_5 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 569.0
PJD3_k127_83842_6 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008652,GO:0008743,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0030145,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046870,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002485 555.0
PJD3_k127_83842_7 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 531.0
PJD3_k127_83842_8 Serine dehydratase K01752 - 4.3.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003191 525.0
PJD3_k127_83842_9 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002709 503.0
PJD3_k127_849049_0 COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL CutL homologs K07303 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003536 616.0
PJD3_k127_849049_1 4fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 453.0
PJD3_k127_849049_10 Cupin 2, conserved barrel domain protein - - - 0.00004194 54.0
PJD3_k127_849049_2 ASPIC and UnbV - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 315.0
PJD3_k127_849049_3 Helix-hairpin-helix domain K04477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003994 302.0
PJD3_k127_849049_4 2Fe-2S -binding domain protein K07302 - 1.3.99.16 0.000000000000000000000000000000000000000000000000000000002496 203.0
PJD3_k127_849049_5 - - - - 0.000000000000000000000000000000000000003672 162.0
PJD3_k127_849049_6 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000000009138 127.0
PJD3_k127_849049_7 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000002069 110.0
PJD3_k127_849049_8 LytTr DNA-binding domain K02477 - - 0.000000000000000001175 96.0
PJD3_k127_849049_9 PFAM response regulator receiver K02477 - - 0.0000000005207 63.0
PJD3_k127_884464_0 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007061 454.0
PJD3_k127_884464_1 membrane K07148 - - 0.000000000000000000000000000000000000000000000000000000000000000003572 241.0
PJD3_k127_884464_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000001129 148.0
PJD3_k127_884464_3 - - - - 0.0000000000000000000000000000000001418 142.0
PJD3_k127_884464_4 - - - - 0.000000000000001413 80.0
PJD3_k127_91786_0 Belongs to the glycosyl hydrolase 13 family K21575 - 3.2.1.135 1.329e-210 671.0
PJD3_k127_91786_1 Sel1-like repeats. K07126 - - 0.000000000000000001971 89.0
PJD3_k127_91786_2 COG1640 4-alpha-glucanotransferase K00705 - 2.4.1.25 0.000000000654 62.0
PJD3_k127_924094_0 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 492.0
PJD3_k127_924094_1 Domain of unknown function (DUF4396) - - - 0.00000000000000000000000000000000000000000000000000000000000001347 218.0
PJD3_k127_924094_2 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000006197 171.0
PJD3_k127_924094_3 histidine kinase A domain protein - - - 0.00000000000001089 74.0
PJD3_k127_936735_0 cAMP biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 353.0
PJD3_k127_936735_1 Adenosine/AMP deaminase K19572 - 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000001872 228.0
PJD3_k127_936735_2 Methyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000003473 207.0
PJD3_k127_936735_3 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000001142 186.0
PJD3_k127_936735_4 Pectinacetylesterase - - - 0.000000000000000000000000000000000000000002423 172.0
PJD3_k127_936735_5 domain, Protein - - - 0.0000000000000000000000002721 122.0
PJD3_k127_936735_6 Cytochrome C' - - - 0.00000000000003973 78.0
PJD3_k127_936735_7 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.0000001256 55.0
PJD3_k127_936735_8 Dienelactone hydrolase family - - - 0.000004629 49.0