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Overview

ID MAG02935
Name PJD3_bin.28
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Burkholderiaceae
Genus JAGXFR01
Species
Assembly information
Completeness (%) 94.83
Contamination (%) 2.4
GC content (%) 67.0
N50 (bp) 11,675
Genome size (bp) 2,442,606

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2412

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_100906_0 catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007321 600.0
PJD3_k127_100906_1 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 449.0
PJD3_k127_100906_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 404.0
PJD3_k127_100906_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 339.0
PJD3_k127_100906_4 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000003446 240.0
PJD3_k127_1034252_0 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 2.271e-210 660.0
PJD3_k127_1034252_1 TIGRFAM glycine betaine L-proline ABC transporter, ATPase subunit K02000 - 3.6.3.32 5.26e-197 623.0
PJD3_k127_1034252_2 COG1271 Cytochrome bd-type quinol oxidase, subunit 1 K00425 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 558.0
PJD3_k127_1034252_3 PFAM Substrate-binding region of ABC-type glycine betaine transport system K02002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000718 548.0
PJD3_k127_1034252_4 PFAM binding-protein-dependent transport systems inner membrane component K02001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 504.0
PJD3_k127_1034252_5 C4-dicarboxylate ABC transporter K11688 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006629 474.0
PJD3_k127_1034252_6 cytochrome d ubiquinol oxidase, subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 378.0
PJD3_k127_1034252_7 Pyridoxal-phosphate dependent enzyme - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002863 280.0
PJD3_k127_1034252_8 Tripartite ATP-independent periplasmic transporters, DctQ component K11689 - - 0.00000000000000000000000000000000000000000000000000000003651 201.0
PJD3_k127_107776_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 1.386e-238 752.0
PJD3_k127_107776_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009437 514.0
PJD3_k127_107776_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007228 350.0
PJD3_k127_107776_3 Nucleoside H+ symporter K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000004229 237.0
PJD3_k127_1141922_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 456.0
PJD3_k127_1141922_1 Dolichyl-phosphate-mannose-protein mannosyltransferase K00786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 398.0
PJD3_k127_1141922_2 Permease, YjgP YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 369.0
PJD3_k127_1141922_3 Permease, YjgP YjgQ family K07091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007367 348.0
PJD3_k127_1141922_4 2-oxoacid ferredoxin oxidoreductase, alpha subunit K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.000000000000000000000000000000000000000000000000000000000000001251 224.0
PJD3_k127_1141922_5 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000113 186.0
PJD3_k127_1188251_0 Catalyzes the reversible hydration of fumarate to (S)- malate K01676 - 4.2.1.2 1.935e-279 864.0
PJD3_k127_1188251_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 7.581e-225 705.0
PJD3_k127_126530_0 PFAM type III effector Hrp-dependent outers K21948 - 2.7.1.217 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003442 273.0
PJD3_k127_126530_1 Regulatory protein GntR HTH K05799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001384 265.0
PJD3_k127_126530_2 GAF domain K21405 - - 0.000000000000000000009981 95.0
PJD3_k127_13187_0 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 8.354e-209 651.0
PJD3_k127_13187_1 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 353.0
PJD3_k127_13187_2 PFAM UspA - - - 0.00000000000000000000000000000000000000000000000000004754 196.0
PJD3_k127_1319184_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 516.0
PJD3_k127_1319184_1 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 458.0
PJD3_k127_1319184_2 transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001209 236.0
PJD3_k127_1319184_3 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000001083 233.0
PJD3_k127_1319184_4 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000003145 196.0
PJD3_k127_1322545_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 544.0
PJD3_k127_1322545_1 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 462.0
PJD3_k127_1322545_2 PFAM aminotransferase, class IV K00824 - 2.6.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002116 388.0
PJD3_k127_1322545_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000000003507 230.0
PJD3_k127_1322545_4 Belongs to the UPF0250 family K09158 - - 0.0000000000000000000000000000722 117.0
PJD3_k127_1322545_5 - - - - 0.000007061 56.0
PJD3_k127_1322581_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1045.0
PJD3_k127_1322581_1 Protein of unknown function (DUF1631) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 327.0
PJD3_k127_1322581_2 histidine kinase HAMP region domain protein K02484,K07645 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 285.0
PJD3_k127_1333109_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K00170 - 1.2.7.1 3.549e-320 996.0
PJD3_k127_1333109_1 Cys/Met metabolism PLP-dependent enzyme K01740 - 2.5.1.49 8.459e-248 767.0
PJD3_k127_1333109_10 cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005377 276.0
PJD3_k127_1333109_11 ferredoxin K00172 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000002056 265.0
PJD3_k127_1333109_12 denitrification pathway - - - 0.000000000000000000000000000000000000000000000000001837 191.0
PJD3_k127_1333109_13 ADP-ribosylglycohydrolase K05521 - 3.2.2.24 0.0000000000000000000000000000000000000000001808 168.0
PJD3_k127_1333109_14 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000007143 164.0
PJD3_k127_1333109_15 PFAM Class I peptide chain release factor K15034 - - 0.00000000000000000000000000000000000000001026 158.0
PJD3_k127_1333109_16 Belongs to the DapA family K01714 - 4.3.3.7 0.00000000000000000000000000000000000003004 148.0
PJD3_k127_1333109_17 trans-acting regulatory HvrA protein K03746 - - 0.000000000000000006707 94.0
PJD3_k127_1333109_2 fad dependent oxidoreductase K07137 - - 4.044e-235 739.0
PJD3_k127_1333109_3 'glutamate synthase K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000497 550.0
PJD3_k127_1333109_4 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 520.0
PJD3_k127_1333109_5 NYN domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003395 393.0
PJD3_k127_1333109_6 PFAM NAD dependent epimerase dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 364.0
PJD3_k127_1333109_7 Hemerythrin HHE cation binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 330.0
PJD3_k127_1333109_8 Peptidase family M20/M25/M40 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003727 306.0
PJD3_k127_1333109_9 domain protein K00528,K16951 - 1.18.1.2,1.19.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002489 285.0
PJD3_k127_1334109_0 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 365.0
PJD3_k127_1334109_1 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000009532 233.0
PJD3_k127_1334109_2 protein conserved in bacteria - - - 0.00000000000000000000000000000000000001195 148.0
PJD3_k127_1336540_0 Hydrolase, TatD family K03424 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 347.0
PJD3_k127_1336540_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008806 346.0
PJD3_k127_1336540_2 dna polymerase iii K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000007894 272.0
PJD3_k127_1336540_3 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000204 245.0
PJD3_k127_1336540_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000002409 246.0
PJD3_k127_1336540_5 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000000008853 241.0
PJD3_k127_1336540_6 Pfam Ankyrin K06867 - - 0.000000000000000000000000000000000000000000006472 172.0
PJD3_k127_1336540_7 PilZ domain K02676 - - 0.000000000000000000000000000000000000007665 148.0
PJD3_k127_1336540_8 Transport and Golgi organisation 2 - - - 0.000000000000000000004946 105.0
PJD3_k127_1377753_0 Mo-co oxidoreductase dimerisation domain K17225 - - 5.925e-231 720.0
PJD3_k127_1377753_1 cytochrome K08738 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 413.0
PJD3_k127_1377753_2 Sulfur oxidation protein SoxY K17226 - - 0.0000000000000000000000000000000000000000000000004884 180.0
PJD3_k127_1377753_3 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000007973 131.0
PJD3_k127_1377753_4 Transcriptional regulator - - - 0.0000000000000000000000000007611 119.0
PJD3_k127_1377753_5 Sulphur oxidation protein SoxZ K17227 - - 0.0000000000000000000000003454 106.0
PJD3_k127_1377753_6 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.00000000000000004258 92.0
PJD3_k127_1390369_0 ABC transporter K02056 - 3.6.3.17 1.376e-219 694.0
PJD3_k127_1390369_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000001661 250.0
PJD3_k127_1390369_2 SpoU rRNA Methylase family K03437 - - 0.000000000000000000000000000000000000000000000000000000002649 211.0
PJD3_k127_1390369_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000009928 132.0
PJD3_k127_1390369_4 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.00000000000000000000000000001148 121.0
PJD3_k127_1410083_0 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 359.0
PJD3_k127_1410083_1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.000000000000000000000000000000000000000000000006776 181.0
PJD3_k127_1410083_2 MAPEG family - - - 0.000000000000000000000000002248 116.0
PJD3_k127_1437239_0 Succinyl-CoA ligase like flavodoxin domain K09181 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 606.0
PJD3_k127_1437239_1 histone deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009704 361.0
PJD3_k127_1437239_2 AsmA family K07289 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009242 326.0
PJD3_k127_1444944_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1446.0
PJD3_k127_1444944_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 1.256e-317 981.0
PJD3_k127_1444944_10 Cytochrome C oxidase, mono-heme subunit/FixO K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 324.0
PJD3_k127_1444944_11 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003047 323.0
PJD3_k127_1444944_12 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 312.0
PJD3_k127_1444944_13 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 GO:0000166,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003999,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0012505,GO:0016192,GO:0016208,GO:0016740,GO:0016757,GO:0016763,GO:0017076,GO:0018130,GO:0019438,GO:0030141,GO:0030554,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0034641,GO:0034654,GO:0034774,GO:0036094,GO:0036230,GO:0042119,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004237 295.0
PJD3_k127_1444944_14 PFAM NAD-dependent epimerase dehydratase K00067,K01790 - 1.1.1.133,5.1.3.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 302.0
PJD3_k127_1444944_15 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 306.0
PJD3_k127_1444944_16 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003402 272.0
PJD3_k127_1444944_17 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001422 269.0
PJD3_k127_1444944_18 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000001776 238.0
PJD3_k127_1444944_19 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0030234,GO:0031668,GO:0033554,GO:0034641,GO:0042802,GO:0043085,GO:0043170,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050790,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0071496,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000204 220.0
PJD3_k127_1444944_2 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 1.375e-272 843.0
PJD3_k127_1444944_20 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000864 214.0
PJD3_k127_1444944_21 PFAM NUDIX hydrolase K08310 - 3.6.1.67 0.0000000000000000000000000000000000000000000000000000000001114 207.0
PJD3_k127_1444944_22 Class II Aldolase and Adducin N-terminal domain K01628 - 4.1.2.17 0.000000000000000000000000000000000000000000000000000000002195 209.0
PJD3_k127_1444944_23 MaoC like domain - - - 0.000000000000000000000000000000000000000000000000000003617 195.0
PJD3_k127_1444944_24 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000008244 191.0
PJD3_k127_1444944_25 FixH K09926 - - 0.00000000000000000000000000006678 130.0
PJD3_k127_1444944_26 Putative regulatory protein - - - 0.00000000000000000000003065 106.0
PJD3_k127_1444944_27 - - - - 0.0000000000001012 82.0
PJD3_k127_1444944_28 Cytochrome oxidase maturation protein cbb3-type - - - 0.00000000003379 71.0
PJD3_k127_1444944_29 Cbb3-type cytochrome oxidase K00407 - - 0.0000000001858 67.0
PJD3_k127_1444944_3 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 6.612e-204 644.0
PJD3_k127_1444944_4 Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 2.804e-197 623.0
PJD3_k127_1444944_5 cation transport ATPase K01533 - 3.6.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 628.0
PJD3_k127_1444944_6 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 403.0
PJD3_k127_1444944_7 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 390.0
PJD3_k127_1444944_8 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 394.0
PJD3_k127_1444944_9 S-adenosylmethionine diacylglycerol 3-amino-3-carboxypropyl K13622 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 370.0
PJD3_k127_1445345_0 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 2.12e-296 922.0
PJD3_k127_1445345_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603 456.0
PJD3_k127_1445345_2 ABC-type branched-chain amino acid transport systems ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 442.0
PJD3_k127_1445345_3 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004719 413.0
PJD3_k127_1445345_4 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000848 241.0
PJD3_k127_1483374_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1193.0
PJD3_k127_1483374_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 7.441e-279 869.0
PJD3_k127_1483374_10 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.000000000000000000000000000000000000000000000000006713 188.0
PJD3_k127_1483374_11 Preprotein translocase, YajC subunit K03210 - - 0.00000000000000000000000000000000000000003252 154.0
PJD3_k127_1483374_12 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000000000000000000004805 155.0
PJD3_k127_1483374_2 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 3.066e-195 620.0
PJD3_k127_1483374_3 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004857 600.0
PJD3_k127_1483374_4 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 609.0
PJD3_k127_1483374_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 555.0
PJD3_k127_1483374_6 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 430.0
PJD3_k127_1483374_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 343.0
PJD3_k127_1483374_8 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006381 293.0
PJD3_k127_1483374_9 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000004847 221.0
PJD3_k127_1494718_0 Succinylglutamate desuccinylase / Aspartoacylase family K15784 - 3.5.1.125 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 430.0
PJD3_k127_1494718_1 Belongs to the ABC transporter superfamily K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 427.0
PJD3_k127_1494718_2 Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005975 412.0
PJD3_k127_1494718_3 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 407.0
PJD3_k127_1494718_4 Belongs to the ABC transporter superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000232 401.0
PJD3_k127_1494718_5 Succinylglutamate desuccinylase / Aspartoacylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 396.0
PJD3_k127_1494718_6 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009523 382.0
PJD3_k127_1494718_7 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000006746 204.0
PJD3_k127_1501969_0 Beta/gamma crystallins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 441.0
PJD3_k127_1501969_1 Belongs to the DapA family K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000502 416.0
PJD3_k127_1501969_2 response to cobalt ion - - - 0.000000000000000000000000000000000000000000001115 170.0
PJD3_k127_1501969_3 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000002948 110.0
PJD3_k127_1518940_0 Dehydratase family K13875 - 4.2.1.25 1.959e-290 900.0
PJD3_k127_1518940_1 Belongs to the DapA family K01714,K13876 - 4.2.1.43,4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000386 520.0
PJD3_k127_1518940_2 Sodium calcium - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002244 466.0
PJD3_k127_1518940_3 Belongs to the LDH2 MDH2 oxidoreductase family K00016 - 1.1.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001969 421.0
PJD3_k127_1518940_4 PFAM NAD-dependent epimerase dehydratase K21883 - 1.1.1.401 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005643 327.0
PJD3_k127_1518940_5 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000004186 188.0
PJD3_k127_1518940_6 UTRA - - - 0.000000007545 59.0
PJD3_k127_1518940_7 Aldehyde dehydrogenase family K00128,K22187 - 1.2.1.3 0.00001494 50.0
PJD3_k127_1518964_0 Outer membrane protein transport protein (OMPP1/FadL/TodX) K06076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 289.0
PJD3_k127_1518964_1 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000003316 221.0
PJD3_k127_1518964_2 EamA-like transporter family - - - 0.000000000000000000000000000000001063 131.0
PJD3_k127_1518964_3 Cupin domain - - - 0.000000000011 67.0
PJD3_k127_1539_0 Histidine kinase K02487,K06596 - - 0.0 1144.0
PJD3_k127_1539_1 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K02660 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 578.0
PJD3_k127_1539_2 Belongs to the UPF0301 (AlgH) family K07735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007304 253.0
PJD3_k127_1539_3 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000002018 186.0
PJD3_k127_1539_4 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000001467 149.0
PJD3_k127_1539_5 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000007101 121.0
PJD3_k127_1561523_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 1.309e-229 719.0
PJD3_k127_1561523_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.043e-223 703.0
PJD3_k127_1561523_2 Cell shape determining protein, MreB Mrl family K03569 - - 5.069e-200 632.0
PJD3_k127_1561523_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006746 287.0
PJD3_k127_1561523_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000000001037 187.0
PJD3_k127_1561523_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000001374 115.0
PJD3_k127_1561523_6 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000002532 103.0
PJD3_k127_1561523_7 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000002467 50.0
PJD3_k127_1565124_0 Proton-conducting membrane transporter - - - 0.0 1029.0
PJD3_k127_1565124_1 oligoendopeptidase F K08602 - - 5.019e-217 686.0
PJD3_k127_1565124_2 Proton-conducting membrane transporter K12141 - - 7.166e-199 637.0
PJD3_k127_1565124_3 NADH dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 477.0
PJD3_k127_1565124_4 hydrogenase 4 membrane K12140 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 344.0
PJD3_k127_1565124_5 4-carboxymuconolactone decarboxylase K01607 - 4.1.1.44 0.0000000000000000000000000000000000000000000000000000000000001521 214.0
PJD3_k127_1565124_6 - - - - 0.0000000000000000000000000000000000000000000000000001955 189.0
PJD3_k127_1565124_7 Glutaredoxin - - - 0.00000000000000000000000000000000000000000003048 175.0
PJD3_k127_1586225_0 Belongs to the 5'-nucleotidase family K11751,K17224 - 3.1.3.5,3.6.1.45 6.102e-286 886.0
PJD3_k127_1586225_1 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 374.0
PJD3_k127_1586225_2 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 361.0
PJD3_k127_1586225_3 Cytochrome c K17223 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002142 267.0
PJD3_k127_1586225_4 Haem-degrading - - - 0.000000000000000000000000000000000000000000000008927 177.0
PJD3_k127_1586225_5 DsrE/DsrF-like family K09004 - - 0.000000000000000000000000000000000000000000003222 168.0
PJD3_k127_1586225_6 PFAM Sulphur oxidation protein SoxZ K17227 - - 0.000000000000000000000000000000000007981 136.0
PJD3_k127_1586225_7 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000002962 124.0
PJD3_k127_1589565_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 525.0
PJD3_k127_1589565_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001484 274.0
PJD3_k127_1589565_2 Smr domain - - - 0.000000000000000000000000000000000000000000000000000000006245 208.0
PJD3_k127_1589565_3 Nitrogen regulatory protein P-II K04751,K04752 - - 0.00000000000000000000000000000000000000000000000004064 190.0
PJD3_k127_1606496_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1216.0
PJD3_k127_1606496_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007553 259.0
PJD3_k127_1606496_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005473 240.0
PJD3_k127_1606496_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000000000105 77.0
PJD3_k127_1608377_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 589.0
PJD3_k127_1608377_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 474.0
PJD3_k127_1608377_2 oxidoreductase FAD NAD(P)-binding domain protein K00523,K18248 - 1.17.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005733 457.0
PJD3_k127_1608377_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008635 404.0
PJD3_k127_1608377_4 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008773 396.0
PJD3_k127_1608377_5 abc transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 347.0
PJD3_k127_1608377_6 Nad-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002016 276.0
PJD3_k127_1608377_7 PFAM Cytochrome c, class I K08738 - - 0.000000000000000000000000000000001925 133.0
PJD3_k127_1688424_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 2.094e-254 791.0
PJD3_k127_1688424_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 0.000000000000000000000000000000000000000000000000000000000000000000000002839 250.0
PJD3_k127_1697313_0 Belongs to the ABC transporter superfamily K02031,K02032,K10823,K13896,K15583 - - 1.208e-245 775.0
PJD3_k127_1697313_1 extracellular solute-binding protein, family 5 - - - 1.241e-229 719.0
PJD3_k127_1697313_2 Saccharopine dehydrogenase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 464.0
PJD3_k127_1697313_3 PFAM binding-protein-dependent transport systems inner membrane component K02033,K12369,K13890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002396 415.0
PJD3_k127_1697313_4 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 389.0
PJD3_k127_1697313_5 PFAM MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 385.0
PJD3_k127_1697313_6 Bacterial extracellular solute-binding protein, family 7 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005553 351.0
PJD3_k127_1697313_7 PFAM membrane protein of K08972 - - 0.0000000000000000000000000189 111.0
PJD3_k127_1697313_8 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000001709 61.0
PJD3_k127_171536_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 4.747e-201 650.0
PJD3_k127_171536_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 586.0
PJD3_k127_171536_10 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 336.0
PJD3_k127_171536_11 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004424 328.0
PJD3_k127_171536_12 VacJ family lipoprotein K04754 - - 0.00000000000000000000000000000000000000000000000000000000000000000001015 243.0
PJD3_k127_171536_13 toluene tolerance family protein K07323 - - 0.00000000000000000000000000000000000000000000000000000000000000000007213 240.0
PJD3_k127_171536_14 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000001089 222.0
PJD3_k127_171536_15 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000000002088 210.0
PJD3_k127_171536_16 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.000000000000000000000000000000000000000001866 165.0
PJD3_k127_171536_17 Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane K09774 - - 0.000000000000000000000000000000000000001848 156.0
PJD3_k127_171536_18 sigma 54 modulation protein K05808 - - 0.000000000000000000000000000000000000002258 149.0
PJD3_k127_171536_19 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000003992 164.0
PJD3_k127_171536_2 Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 498.0
PJD3_k127_171536_20 Belongs to the BolA IbaG family - - - 0.0000000000000000000000000000387 119.0
PJD3_k127_171536_21 Lipopolysaccharide-assembly, LptC-related K11719 - - 0.00000000000000000000000003473 118.0
PJD3_k127_171536_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 484.0
PJD3_k127_171536_4 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 408.0
PJD3_k127_171536_5 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002476 398.0
PJD3_k127_171536_6 abc transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 374.0
PJD3_k127_171536_7 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 367.0
PJD3_k127_171536_8 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 365.0
PJD3_k127_171536_9 ABC transporter permease K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 355.0
PJD3_k127_1724318_0 UPF0365 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005628 494.0
PJD3_k127_1724318_1 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 441.0
PJD3_k127_1724318_2 DNA excision - - - 0.0000000000009754 74.0
PJD3_k127_1768283_0 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006745 502.0
PJD3_k127_1768283_1 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00244 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 341.0
PJD3_k127_1768283_2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000001366 207.0
PJD3_k127_1768283_3 MgtC family K07507 - - 0.000000000000000000000000000000000000000000000000001514 194.0
PJD3_k127_1768283_4 Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine K01754 - 4.3.1.19 0.0000000000000000000000001974 106.0
PJD3_k127_18091_0 Catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive K01652 - 2.2.1.6 1.038e-298 925.0
PJD3_k127_18091_1 orn lys arg decarboxylase K01584 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 579.0
PJD3_k127_18091_2 RNA polymerase K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000002075 242.0
PJD3_k127_18091_3 Protein of unknown function (DUF3106) - - - 0.00000000000000000008793 102.0
PJD3_k127_18091_4 Protein of unknown function (DUF3619) - - - 0.0000000000000001179 88.0
PJD3_k127_1854409_0 helicase K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 438.0
PJD3_k127_1854409_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 322.0
PJD3_k127_1854409_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 311.0
PJD3_k127_1854409_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001753 254.0
PJD3_k127_187399_0 Fad dependent oxidoreductase K00111 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 483.0
PJD3_k127_187399_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002335 421.0
PJD3_k127_187399_10 OsmC-like protein - - - 0.0000000000000000001559 94.0
PJD3_k127_187399_11 thiamine biosynthesis protein ThiS K03154 - - 0.0000000000000001862 91.0
PJD3_k127_187399_2 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 419.0
PJD3_k127_187399_3 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 375.0
PJD3_k127_187399_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 342.0
PJD3_k127_187399_5 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003476 328.0
PJD3_k127_187399_6 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 320.0
PJD3_k127_187399_7 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000000000007058 182.0
PJD3_k127_187399_8 Sulphur transport K07112 - - 0.00000000000000000000000000000000000000000009161 171.0
PJD3_k127_187399_9 TIGRFAM methyltransferase FkbM family - - - 0.00000000000000000000005643 100.0
PJD3_k127_1925557_0 Receptor family ligand binding region - - - 3.564e-220 688.0
PJD3_k127_1925557_1 Amidase K02433 - 6.3.5.6,6.3.5.7 3.827e-215 678.0
PJD3_k127_1925557_2 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 539.0
PJD3_k127_1925557_3 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008734 524.0
PJD3_k127_1925557_4 Major Facilitator Superfamily K08223 - - 0.00000000318 58.0
PJD3_k127_1925557_5 PFAM ABC transporter related K01995 - - 0.0001992 49.0
PJD3_k127_1929084_0 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 485.0
PJD3_k127_1929084_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008902 436.0
PJD3_k127_1929084_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000002628 177.0
PJD3_k127_1973806_0 COG0798 Arsenite efflux pump ACR3 and related permeases K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 574.0
PJD3_k127_1973806_1 Iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 527.0
PJD3_k127_1973806_2 Mg2 transporter protein cora family protein K16074 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0022883,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046583,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 385.0
PJD3_k127_1973806_3 Ion transport 2 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 349.0
PJD3_k127_1979164_0 CoA-transferase family III - - - 1.963e-204 646.0
PJD3_k127_1979164_1 C4-dicarboxylate ABC transporter permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 604.0
PJD3_k127_1979164_2 COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component K11688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003672 403.0
PJD3_k127_1979164_3 Belongs to the alpha-IPM synthase homocitrate synthase family K01640 - 4.1.3.4 0.000000000000000000000000000000000000000000000000000000000000000002028 227.0
PJD3_k127_1979164_4 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000004883 152.0
PJD3_k127_1979164_5 - - - - 0.0002263 45.0
PJD3_k127_2005269_0 PFAM Acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.679e-217 682.0
PJD3_k127_2005269_1 CoA-transferase family III K18289 - 2.8.3.22 2.703e-195 616.0
PJD3_k127_2005269_2 PFAM MmgE PrpD family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 613.0
PJD3_k127_2005269_3 Aldehyde dehydrogenase family K00128,K00154 - 1.2.1.3,1.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004341 551.0
PJD3_k127_2005269_4 N-terminal half of MaoC dehydratase K09709,K18291 - 4.2.1.153,4.2.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003775 386.0
PJD3_k127_2005269_5 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002286 310.0
PJD3_k127_2005269_6 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004196 293.0
PJD3_k127_2005269_7 Allophanate hydrolase subunit 2 K06350 - - 0.00000000000000000000000000000006662 128.0
PJD3_k127_2006669_0 CoA-substrate-specific enzyme activase - - - 2.573e-251 795.0
PJD3_k127_2006669_1 Pkd domain containing protein - - - 0.000000000000000006673 91.0
PJD3_k127_2006669_2 GDSL-like Lipase/Acylhydrolase family - - - 0.00005684 46.0
PJD3_k127_2008875_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 381.0
PJD3_k127_2008875_1 Belongs to the GST superfamily K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 340.0
PJD3_k127_2008875_2 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005163 329.0
PJD3_k127_2008875_3 Zinc-binding dehydrogenase K00001 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000003773 250.0
PJD3_k127_200982_0 Recombination factor protein RarA K07478 - - 1.078e-194 615.0
PJD3_k127_200982_1 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008312 263.0
PJD3_k127_200982_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000006714 99.0
PJD3_k127_2022926_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 2.299e-274 852.0
PJD3_k127_2022926_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 569.0
PJD3_k127_2022926_2 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 524.0
PJD3_k127_2022926_3 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 490.0
PJD3_k127_2022926_4 PFAM ABC transporter related K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 449.0
PJD3_k127_2022926_5 PFAM ABC transporter related K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 389.0
PJD3_k127_2022926_6 amidohydrolase - - - 0.000000000000000000000000000000000000000003865 159.0
PJD3_k127_2023631_0 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 366.0
PJD3_k127_2023631_1 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000006918 226.0
PJD3_k127_2023631_2 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000232 207.0
PJD3_k127_2023631_3 Ferredoxin K05337 - - 0.000000000000000000000000000000001502 130.0
PJD3_k127_2023631_4 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000003472 105.0
PJD3_k127_2031158_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 1.687e-281 879.0
PJD3_k127_2031158_1 NMT1-like family K07080 - - 0.000000000000000000000000000002474 121.0
PJD3_k127_2031158_2 Domain of unknown function (DUF1850) - - - 0.00000000000000000000286 110.0
PJD3_k127_2047037_0 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 391.0
PJD3_k127_2047037_1 Glutathione S-transferase K03599 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006062 336.0
PJD3_k127_2047037_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006594 329.0
PJD3_k127_2047037_3 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001313 296.0
PJD3_k127_2047037_4 stringent starvation protein B K03600 - - 0.0000000000000000000000000000000000000000006015 163.0
PJD3_k127_2052383_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K07812 - 1.7.2.3 4.226e-291 907.0
PJD3_k127_2052383_1 Peptidase dimerisation domain K01451 - 3.5.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003728 551.0
PJD3_k127_2073088_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1072.0
PJD3_k127_2073088_1 acyl-CoA dehydrogenase - - - 1.105e-283 881.0
PJD3_k127_2073088_10 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.0000000000000000000000000000000000000000000006372 173.0
PJD3_k127_2073088_11 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 0.00000000000000000000001408 101.0
PJD3_k127_2073088_2 Aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 1.137e-242 760.0
PJD3_k127_2073088_3 Belongs to the thiolase family K00632 - 2.3.1.16 2.348e-200 631.0
PJD3_k127_2073088_4 2-Nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 478.0
PJD3_k127_2073088_5 Conserved TM helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 464.0
PJD3_k127_2073088_6 PFAM Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 324.0
PJD3_k127_2073088_7 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 298.0
PJD3_k127_2073088_8 Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001165 247.0
PJD3_k127_2073088_9 GDSL-like Lipase/Acylhydrolase family - - - 0.000000000000000000000000000000000000000000000000000000009582 205.0
PJD3_k127_2074425_0 Protein conserved in bacteria - - - 2.711e-295 923.0
PJD3_k127_2074425_1 FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000002491 262.0
PJD3_k127_2074425_2 - - - - 0.0000000000004947 76.0
PJD3_k127_2099189_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001299 607.0
PJD3_k127_2099189_1 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000003766 205.0
PJD3_k127_2099189_2 FecR protein - - - 0.0000000000000000000000004124 114.0
PJD3_k127_2101741_0 ABC transporter substrate-binding protein K02027 - - 1.786e-252 786.0
PJD3_k127_2101741_1 Alcohol dehydrogenase GroES-like domain K13953,K18382 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001715 461.0
PJD3_k127_2101741_2 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 441.0
PJD3_k127_2101741_3 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 406.0
PJD3_k127_2101741_4 Belongs to the ABC transporter superfamily K17324 - - 0.00000000000000000000000000000000000001257 148.0
PJD3_k127_2105500_0 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 408.0
PJD3_k127_2105500_1 ABC transporter K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 391.0
PJD3_k127_2105500_2 Bacterial periplasmic substrate-binding proteins K02030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 350.0
PJD3_k127_2105500_3 L-lactate dehydrogenase K00101,K00104 - 1.1.2.3,1.1.3.15 0.00000000000000000000000000000000000000000000000000000000001859 207.0
PJD3_k127_2105500_4 GYD domain - - - 0.0000000000000000000000000000000000009987 142.0
PJD3_k127_2116585_0 ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 6.515e-209 657.0
PJD3_k127_2116585_1 HflC and HflK could regulate a protease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 551.0
PJD3_k127_2116585_2 HflC and HflK could encode or regulate a protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 292.0
PJD3_k127_2120478_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 552.0
PJD3_k127_2120478_1 Peptidase M16 K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008657 465.0
PJD3_k127_2120478_10 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000002483 152.0
PJD3_k127_2120478_11 SURF1-like protein K14998 - - 0.000000000000000000000000000000000000005274 157.0
PJD3_k127_2120478_12 signal sequence binding - - - 0.000000000000000000000000000000000000007297 158.0
PJD3_k127_2120478_13 Protein of unknown function (DUF2909) - - - 0.00000000009181 73.0
PJD3_k127_2120478_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001639 408.0
PJD3_k127_2120478_3 RNA polymerase sigma factor RpoH K03089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 389.0
PJD3_k127_2120478_4 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 345.0
PJD3_k127_2120478_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 348.0
PJD3_k127_2120478_6 protein required for cytochrome oxidase assembly K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003474 321.0
PJD3_k127_2120478_7 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008805 313.0
PJD3_k127_2120478_8 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000002297 205.0
PJD3_k127_2120478_9 Methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000001243 169.0
PJD3_k127_2126564_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2278.0
PJD3_k127_2126564_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 367.0
PJD3_k127_2126564_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001283 300.0
PJD3_k127_2126564_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000009573 261.0
PJD3_k127_2126564_4 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006657 252.0
PJD3_k127_2126564_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000006849 178.0
PJD3_k127_2126564_6 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.000000000000000000000000000000000000008884 149.0
PJD3_k127_2126564_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000007479 79.0
PJD3_k127_2171704_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1307.0
PJD3_k127_2171704_1 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0 1023.0
PJD3_k127_2171704_10 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351,K16246 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003891 470.0
PJD3_k127_2171704_11 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008286 463.0
PJD3_k127_2171704_12 PFAM Enoyl-CoA hydratase isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005586 302.0
PJD3_k127_2171704_13 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 - 1.6.5.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004667 302.0
PJD3_k127_2171704_14 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00349 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003748 284.0
PJD3_k127_2171704_15 response regulator K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001952 276.0
PJD3_k127_2171704_16 of the drug metabolite transporter (DMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000491 277.0
PJD3_k127_2171704_17 Histidine kinase K02484,K07645 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006492 283.0
PJD3_k127_2171704_18 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000004699 255.0
PJD3_k127_2171704_19 Spermidine synthase K00797 - 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000006615 247.0
PJD3_k127_2171704_2 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 1.453e-308 966.0
PJD3_k127_2171704_20 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000001755 241.0
PJD3_k127_2171704_21 glycosylase K03649 - 3.2.2.28 0.00000000000000000000000000000000000000000000000000000397 197.0
PJD3_k127_2171704_22 COG0517 FOG CBS domain - - - 0.00000000000000000000000000000000000000000000000000002746 194.0
PJD3_k127_2171704_23 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.00000000000000000000000000000000000000000004904 163.0
PJD3_k127_2171704_24 LysE type translocator - - - 0.00000000000000000000000000000000007565 140.0
PJD3_k127_2171704_25 Small multidrug resistance - - - 0.0000000000000000000000000000007364 131.0
PJD3_k127_2171704_26 Sulfurtransferase - - - 0.0000000000000000000004325 98.0
PJD3_k127_2171704_27 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000000000002106 94.0
PJD3_k127_2171704_3 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 2.148e-276 874.0
PJD3_k127_2171704_4 Molecular chaperone. Has ATPase activity K04079 - - 4.893e-275 859.0
PJD3_k127_2171704_5 type II secretion system protein E K02454 - - 6.409e-236 743.0
PJD3_k127_2171704_6 VWA containing CoxE family protein K09989 - - 9.388e-203 636.0
PJD3_k127_2171704_7 Transport of potassium into the cell K03549 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 614.0
PJD3_k127_2171704_8 ATPase associated with various cellular activities, AAA_5 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 495.0
PJD3_k127_2171704_9 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007394 487.0
PJD3_k127_2181091_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 6.951e-217 693.0
PJD3_k127_2181091_1 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 529.0
PJD3_k127_2181091_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009492 390.0
PJD3_k127_2181091_3 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008948 358.0
PJD3_k127_2181091_4 Acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000998 326.0
PJD3_k127_2181091_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000000191 265.0
PJD3_k127_2181091_6 D,D-heptose 1,7-bisphosphate phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000002724 230.0
PJD3_k127_2181091_7 Metal-dependent hydrolase K07043 - - 0.0000000000000000000000000000000000000000000000000000000000000000211 233.0
PJD3_k127_2181091_8 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000004997 198.0
PJD3_k127_2195466_0 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003844 457.0
PJD3_k127_2195466_1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 427.0
PJD3_k127_2195466_2 riboflavin synthase alpha K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000003107 197.0
PJD3_k127_2204277_0 Fibronectin type 3 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016 408.0
PJD3_k127_2204277_1 Cation efflux family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005496 280.0
PJD3_k127_2204277_2 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000000000000000000000000000000000007443 154.0
PJD3_k127_2207926_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 1.148e-214 672.0
PJD3_k127_2207926_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000877 374.0
PJD3_k127_2207926_2 Phospholipid-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000318 328.0
PJD3_k127_2207926_3 Phosphoglycerate mutase K15634 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000789 200.0
PJD3_k127_2207926_4 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.0000000000000000000000000000000000000000000000000006798 194.0
PJD3_k127_2207926_5 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000001736 158.0
PJD3_k127_2231093_0 PFAM AMP-dependent synthetase and ligase K00666,K20034 - 6.2.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 359.0
PJD3_k127_2231093_1 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006029 308.0
PJD3_k127_2231093_2 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000002704 231.0
PJD3_k127_2231093_3 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000001807 172.0
PJD3_k127_2231093_4 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000008072 93.0
PJD3_k127_2231093_5 - - - - 0.000000213 53.0
PJD3_k127_2262966_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.0 1251.0
PJD3_k127_2262966_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 6.219e-299 927.0
PJD3_k127_2262966_10 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 465.0
PJD3_k127_2262966_11 FAD binding K11472 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 389.0
PJD3_k127_2262966_12 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 321.0
PJD3_k127_2262966_13 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004211 319.0
PJD3_k127_2262966_14 Belongs to the HpcH HpaI aldolase family K02510 - 4.1.2.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 302.0
PJD3_k127_2262966_15 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 312.0
PJD3_k127_2262966_16 Cobalamin adenosyltransferase K00798 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016043,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0022607,GO:0030091,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033013,GO:0033014,GO:0034641,GO:0035639,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000009503 250.0
PJD3_k127_2262966_17 UPF0056 inner membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003242 249.0
PJD3_k127_2262966_18 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000001289 181.0
PJD3_k127_2262966_19 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000004135 169.0
PJD3_k127_2262966_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.024e-255 793.0
PJD3_k127_2262966_20 membrane - - - 0.0000000000000000000000000003573 118.0
PJD3_k127_2262966_3 Putative modulator of DNA gyrase K03568 - - 2.386e-235 735.0
PJD3_k127_2262966_4 PFAM FAD linked oxidase domain protein K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 1.96e-219 711.0
PJD3_k127_2262966_5 PFAM FAD linked oxidase domain protein K00102,K03777 - 1.1.2.4,1.1.5.12 1.514e-213 672.0
PJD3_k127_2262966_6 Protein of unknown function - - - 8.852e-205 686.0
PJD3_k127_2262966_7 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009028 547.0
PJD3_k127_2262966_8 glycolate oxidase (Iron-sulfur subunit) K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004503 546.0
PJD3_k127_2262966_9 TRAP transporter solute receptor, TAXI family K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 464.0
PJD3_k127_226749_0 ABC transporter transmembrane region K06147 - - 2.356e-216 692.0
PJD3_k127_226749_1 D-galactarate dehydratase / Altronate hydrolase, C terminus K01685 - 4.2.1.7 1.278e-202 644.0
PJD3_k127_226749_2 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 437.0
PJD3_k127_226749_3 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 421.0
PJD3_k127_226749_4 Helix-hairpin-helix domain K04477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 302.0
PJD3_k127_226749_5 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 284.0
PJD3_k127_226749_6 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000001042 193.0
PJD3_k127_226749_7 FCD K22293 - - 0.000000000000000000000000000000000000000000000001382 185.0
PJD3_k127_226749_8 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K22229 - 1.1.1.215 0.0000000000000000000000000000000000001639 153.0
PJD3_k127_226749_9 CNP1-like family - - - 0.00000000000000626 83.0
PJD3_k127_233695_0 Sulfate transporter antisigma-factor antagonist STAS K03321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 549.0
PJD3_k127_233695_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002083 281.0
PJD3_k127_233695_2 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000001031 252.0
PJD3_k127_233695_3 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000007247 162.0
PJD3_k127_233695_4 Belongs to the universal stress protein A family - - - 0.0000000000000000001225 99.0
PJD3_k127_2395429_0 PFAM cytochrome c biogenesis protein, transmembrane region - - - 0.000000000000000000000000000000000000008143 156.0
PJD3_k127_2395429_1 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00000000000000000000000000000005752 139.0
PJD3_k127_2395429_2 Protein of unknown function (DUF1573) - - - 0.00000005193 63.0
PJD3_k127_2401702_0 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 479.0
PJD3_k127_2401702_1 Protein of unknown function (DUF2863) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 410.0
PJD3_k127_2401702_2 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000002517 267.0
PJD3_k127_2401702_3 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000004539 198.0
PJD3_k127_2401702_4 Glycine zipper 2TM domain K06077 - - 0.00000000000000000000000000000000000000001306 157.0
PJD3_k127_2410001_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004926 580.0
PJD3_k127_2410001_1 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 556.0
PJD3_k127_2410001_2 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 410.0
PJD3_k127_2410001_3 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 319.0
PJD3_k127_2472444_0 acyl-CoA dehydrogenase K06445 - - 3.318e-314 989.0
PJD3_k127_2472444_1 Domain of unknown function(DUF2779) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000879 552.0
PJD3_k127_2554203_0 Dehydrogenase E1 component K00164 - 1.2.4.2 5.816e-281 871.0
PJD3_k127_2554203_1 Dehydrogenase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 8.3e-216 680.0
PJD3_k127_2554203_2 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001765 563.0
PJD3_k127_2554203_3 helicase K03722 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000003882 259.0
PJD3_k127_2554203_4 Protein of unknown function (DUF465) - - - 0.00000000000000002085 83.0
PJD3_k127_256269_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 442.0
PJD3_k127_256269_1 zinc metalloprotease K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000001102 238.0
PJD3_k127_256269_2 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000005613 178.0
PJD3_k127_2631616_0 ABC-type dipeptide transport system periplasmic component K02035 - - 1.375e-244 764.0
PJD3_k127_2631616_1 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases - - - 4.334e-206 661.0
PJD3_k127_2631616_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003052 485.0
PJD3_k127_2631616_3 Belongs to the ABC transporter superfamily K02031,K16202 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 487.0
PJD3_k127_2631616_4 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008111 483.0
PJD3_k127_2631616_5 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007141 466.0
PJD3_k127_2631616_6 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 351.0
PJD3_k127_2631616_7 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 0.00000000000000000008351 90.0
PJD3_k127_2632800_0 ABC-type sugar transport system, periplasmic component K02027 - - 1.831e-240 749.0
PJD3_k127_2632800_1 Part of the ABC transporter complex UgpABCE involved in sn-glycerol-3-phosphate import. Responsible for energy coupling to the transport system K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 523.0
PJD3_k127_2632800_2 ABC-type sugar transport system, permease component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005543 505.0
PJD3_k127_2632800_3 ABC-type sugar K02025,K10237 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004313 496.0
PJD3_k127_2632800_4 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000754 462.0
PJD3_k127_2632800_5 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020,K08319 - 1.1.1.31,1.1.1.411 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005661 432.0
PJD3_k127_2632800_6 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000016 99.0
PJD3_k127_2632800_7 Transposase and inactivated derivatives K07497 - - 0.000000000000000000001167 96.0
PJD3_k127_2632800_8 Dehydratase family K13875 - 4.2.1.25 0.000000000000000001482 85.0
PJD3_k127_2662081_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 0.0 1122.0
PJD3_k127_2662081_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 544.0
PJD3_k127_2662081_2 Highly conserved protein containing a thioredoxin domain K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 409.0
PJD3_k127_2662081_3 Protein of unknown function (DUF1631) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002112 271.0
PJD3_k127_2662081_4 - - - - 0.0000000000000000000000000000000000000002834 155.0
PJD3_k127_2662081_5 Barstar (Barnase inhibitor) - - - 0.0000000000000000000000000000000000006327 145.0
PJD3_k127_2662081_6 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000003455 64.0
PJD3_k127_2672390_0 ABC-type Fe3 transport system permease component K02011 - - 2.858e-263 822.0
PJD3_k127_2672390_1 extracellular solute-binding protein, family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 608.0
PJD3_k127_2672390_2 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301 472.0
PJD3_k127_2672390_3 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001377 278.0
PJD3_k127_2672390_4 PFAM MltA domain protein K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000002497 229.0
PJD3_k127_2672390_5 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.00000000000000000000000000000000000000000000000000000000000005365 223.0
PJD3_k127_26736_0 Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 544.0
PJD3_k127_26736_1 response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 477.0
PJD3_k127_26736_10 cheY-homologous receiver domain - - - 0.0000000000000000000005107 109.0
PJD3_k127_26736_11 CheW-like domain - - - 0.00001301 54.0
PJD3_k127_26736_2 3'-5' exonuclease K07501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 383.0
PJD3_k127_26736_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 342.0
PJD3_k127_26736_4 chemotaxis, protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 322.0
PJD3_k127_26736_5 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000004297 240.0
PJD3_k127_26736_6 CBS domain containing protein - - - 0.00000000000000000000000000000000000000000000000000007012 192.0
PJD3_k127_26736_7 Belongs to the BI1 family K19416 - - 0.000000000000000000000000000000000000000000002969 165.0
PJD3_k127_26736_8 peptidase K06194 - - 0.000000000000000000000000000000000000000000005594 174.0
PJD3_k127_26736_9 Response regulator receiver K02658 - - 0.0000000000000000000000000001631 122.0
PJD3_k127_2695937_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 520.0
PJD3_k127_2695937_1 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 348.0
PJD3_k127_2695937_2 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 326.0
PJD3_k127_2695937_3 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000008473 204.0
PJD3_k127_2695937_4 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000002071 146.0
PJD3_k127_2695937_5 - - - - 0.000000000000000000000000000000001692 138.0
PJD3_k127_2707124_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004374 527.0
PJD3_k127_2707124_1 Belongs to the GPAT DAPAT family K00631 GO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0031224,GO:0031226,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.3.1.15 0.000000000000000000000000000000000004226 146.0
PJD3_k127_2737333_0 LysR substrate binding domain K03717 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005658 436.0
PJD3_k127_2737333_1 Belongs to the peptidase M48B family K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003547 336.0
PJD3_k127_2737333_2 SOUL heme-binding protein - - - 0.00000000004006 63.0
PJD3_k127_2737333_3 PFAM GCN5-related N-acetyltransferase K03824 - - 0.00001992 49.0
PJD3_k127_2744421_0 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 6.381e-286 886.0
PJD3_k127_2744421_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 1.846e-283 878.0
PJD3_k127_2744421_10 Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division K13053,K14160 - - 0.000000000000000000000000000000000000000000000000000000006873 209.0
PJD3_k127_2744421_11 Thioesterase superfamily K07107 - - 0.00000000000000000000000000000000000000000000000000005062 190.0
PJD3_k127_2744421_12 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000000002436 117.0
PJD3_k127_2744421_13 PFAM zinc finger, DksA TraR C4-type - - - 0.0000000000002788 75.0
PJD3_k127_2744421_2 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 7.986e-215 677.0
PJD3_k127_2744421_3 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 635.0
PJD3_k127_2744421_4 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 396.0
PJD3_k127_2744421_5 Acyl CoA acetate 3-ketoacid CoA transferase beta subunit K01029 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 383.0
PJD3_k127_2744421_6 impB/mucB/samB family K14161 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 347.0
PJD3_k127_2744421_7 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 297.0
PJD3_k127_2744421_8 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001703 286.0
PJD3_k127_2744421_9 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000003435 239.0
PJD3_k127_2746032_0 PFAM Lysine exporter protein (LYSE YGGA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 302.0
PJD3_k127_2746032_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003504 227.0
PJD3_k127_2746032_2 - - - - 0.0000000000000000000000000000000000000000001366 164.0
PJD3_k127_2746032_3 - - - - 0.0000000000000000000000001772 114.0
PJD3_k127_2746032_4 - - - - 0.000000000000000000001314 100.0
PJD3_k127_2746032_5 Thioredoxin-like K01829 - 5.3.4.1 0.000000312 59.0
PJD3_k127_2746032_7 Phenazine biosynthesis-like protein - - - 0.0001147 45.0
PJD3_k127_2746032_8 Thioredoxin-like K01829 - 5.3.4.1 0.0008195 42.0
PJD3_k127_2755863_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.544e-216 685.0
PJD3_k127_2755863_1 GntR family transcriptional regulator K03710 - - 0.000000000000000000000000000000000003239 140.0
PJD3_k127_2755863_2 Flavinator of succinate dehydrogenase K09159 - - 0.000000000000000004298 87.0
PJD3_k127_2759494_0 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 603.0
PJD3_k127_2759494_1 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 480.0
PJD3_k127_2759494_2 Domain of unknown function (DUF1993) K09983 - - 0.00000000000000000000000000000000000000000000000000000000000000000002751 235.0
PJD3_k127_2759494_3 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000002391 167.0
PJD3_k127_27623_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002986 586.0
PJD3_k127_27623_1 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 391.0
PJD3_k127_27623_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 343.0
PJD3_k127_27623_3 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008852 336.0
PJD3_k127_27623_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000000000000000000000000000000000000000000000004472 199.0
PJD3_k127_27623_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000003556 183.0
PJD3_k127_27623_6 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000005192 168.0
PJD3_k127_27623_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000002546 138.0
PJD3_k127_27623_8 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000000000002347 92.0
PJD3_k127_27623_9 ATP synthase I chain K02116 - - 0.0000000000009558 73.0
PJD3_k127_2766572_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 4.569e-265 822.0
PJD3_k127_2766572_1 Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation K00906 - 2.7.11.5 2.696e-252 790.0
PJD3_k127_2766572_10 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 312.0
PJD3_k127_2766572_11 acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000632 321.0
PJD3_k127_2766572_12 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001008 287.0
PJD3_k127_2766572_13 rod shape-determining protein MreD K03571 - - 0.00000000000000000000000000000000000000000000000000000000000004387 217.0
PJD3_k127_2766572_14 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000006793 171.0
PJD3_k127_2766572_15 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000001506 169.0
PJD3_k127_2766572_16 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000008956 143.0
PJD3_k127_2766572_17 membrane - - - 0.0000000000000000000000000000000000001112 151.0
PJD3_k127_2766572_2 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 5.546e-244 769.0
PJD3_k127_2766572_3 Acyl-CoA dehydrogenase, C-terminal domain K00253 - 1.3.8.4 6.369e-216 683.0
PJD3_k127_2766572_4 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 3.287e-203 636.0
PJD3_k127_2766572_5 Belongs to the thiolase family K00626 - 2.3.1.9 1.041e-194 614.0
PJD3_k127_2766572_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 494.0
PJD3_k127_2766572_7 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 476.0
PJD3_k127_2766572_8 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 439.0
PJD3_k127_2766572_9 nadph quinone oxidoreductase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 417.0
PJD3_k127_2773482_0 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 367.0
PJD3_k127_2773482_1 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 350.0
PJD3_k127_2773482_2 oxidoreductase K04090 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009139 314.0
PJD3_k127_2773482_3 PFAM regulatory protein AsnC Lrp family - - - 0.00000000000000000000000000000000000000000000000000000002426 203.0
PJD3_k127_2815867_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0 1267.0
PJD3_k127_2815867_1 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.546e-248 776.0
PJD3_k127_2815867_10 PFAM lipolytic protein G-D-S-L family K10804 - 3.1.1.5 0.00000000000000000000000000000000000000000000000000000000000000002571 233.0
PJD3_k127_2815867_11 Helix-turn-helix domain, rpiR family - - - 0.0000000000000000000000000000000000000000000001327 179.0
PJD3_k127_2815867_12 Universal stress protein family - - - 0.000000000000000000000000000000004671 132.0
PJD3_k127_2815867_13 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000004718 113.0
PJD3_k127_2815867_14 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 0.000003517 51.0
PJD3_k127_2815867_2 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 2.236e-232 734.0
PJD3_k127_2815867_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 9.915e-208 655.0
PJD3_k127_2815867_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 523.0
PJD3_k127_2815867_5 NMT1-like family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003296 512.0
PJD3_k127_2815867_6 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 484.0
PJD3_k127_2815867_7 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002737 294.0
PJD3_k127_2815867_8 Sir2 family K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 299.0
PJD3_k127_2815867_9 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001853 290.0
PJD3_k127_2822938_0 Protein of unknown function DUF111 K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004209 310.0
PJD3_k127_2822938_1 TIGRFAM TIGR00268 family protein K06864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 290.0
PJD3_k127_2822938_2 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000212 184.0
PJD3_k127_2839807_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 8.139e-277 880.0
PJD3_k127_2839807_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 616.0
PJD3_k127_2839807_10 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 361.0
PJD3_k127_2839807_11 Pfam SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007931 333.0
PJD3_k127_2839807_12 Major facilitator superfamily K07552,K18552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003194 289.0
PJD3_k127_2839807_13 Membrane transport protein K07088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001869 277.0
PJD3_k127_2839807_14 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003824 256.0
PJD3_k127_2839807_15 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000001301 249.0
PJD3_k127_2839807_16 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000004641 181.0
PJD3_k127_2839807_17 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000001648 177.0
PJD3_k127_2839807_18 Ribosomal protein S21 K02970 - - 0.0000000000000000000000000000003208 124.0
PJD3_k127_2839807_19 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.000000000000000000000000000001995 128.0
PJD3_k127_2839807_2 Belongs to the DEAD box helicase family K11927 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006609 516.0
PJD3_k127_2839807_20 Dodecin K09165 - - 0.00000000000000003556 81.0
PJD3_k127_2839807_21 glycosyl transferase - - - 0.00000343 53.0
PJD3_k127_2839807_3 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 526.0
PJD3_k127_2839807_4 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000942 450.0
PJD3_k127_2839807_5 N-Acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 443.0
PJD3_k127_2839807_6 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 430.0
PJD3_k127_2839807_7 ROK family K00847 - 2.7.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 389.0
PJD3_k127_2839807_8 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006587 386.0
PJD3_k127_2839807_9 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 378.0
PJD3_k127_2842217_0 Threonine synthase K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 620.0
PJD3_k127_2842217_1 homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032 583.0
PJD3_k127_2842217_2 molybdopterin-guanine dinucleotide biosynthesis protein b K03753 - - 0.0000000000000000000000000000000000000000000000000000000000000000002385 233.0
PJD3_k127_2842217_3 Molybdenum cofactor synthesis K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000002567 197.0
PJD3_k127_2842217_4 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000008982 181.0
PJD3_k127_2850970_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 3.993e-224 703.0
PJD3_k127_2850970_1 Putative aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 285.0
PJD3_k127_2856180_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1518.0
PJD3_k127_2856180_1 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.754e-212 667.0
PJD3_k127_2856180_2 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K03821 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 1.896e-204 645.0
PJD3_k127_2856180_3 Belongs to the short-chain dehydrogenases reductases (SDR) family K00023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.1.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 402.0
PJD3_k127_2856180_4 phosphoserine phosphatase K01079 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007273 278.0
PJD3_k127_2856180_5 Polyhydroxyalkanoate synthesis repressor PhaR - - - 0.00000000000000000000000000000000000000000000000000000000000000005784 227.0
PJD3_k127_2856180_6 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000000000000000002548 218.0
PJD3_k127_2856180_7 Sarcosine oxidase, gamma subunit family K00305 - 1.5.3.1 0.0000000000000785 78.0
PJD3_k127_2863137_0 it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction K03656 - 3.6.4.12 1.233e-245 775.0
PJD3_k127_2863137_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 597.0
PJD3_k127_2863137_2 Dyp-type peroxidase family K07223 - - 0.00000000000000000000000000000000000000000000000000000000719 205.0
PJD3_k127_2873532_0 DNA polymerase K02337 - 2.7.7.7 0.0 1228.0
PJD3_k127_2873532_1 Bacterial protein of unknown function (DUF853) K06915 - - 5.058e-215 679.0
PJD3_k127_2873532_10 PFAM short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009679 377.0
PJD3_k127_2873532_11 Transcriptional regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 370.0
PJD3_k127_2873532_12 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003184 373.0
PJD3_k127_2873532_13 Aldolase/RraA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004292 323.0
PJD3_k127_2873532_14 of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003289 305.0
PJD3_k127_2873532_15 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 291.0
PJD3_k127_2873532_16 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000001009 219.0
PJD3_k127_2873532_17 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000804 210.0
PJD3_k127_2873532_18 2-dehydro-3-deoxyphosphogluconate aldolase 4-hydroxy-2-oxoglutarate aldolase K01625 - 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000000000000000002899 196.0
PJD3_k127_2873532_19 FCD - - - 0.0000000000000000000000000000000000000000000000000191 194.0
PJD3_k127_2873532_2 ribonuclease, Rne Rng family K08301 - - 1.239e-205 650.0
PJD3_k127_2873532_20 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000003815 184.0
PJD3_k127_2873532_21 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000008196 179.0
PJD3_k127_2873532_22 Tripartite ATP-independent periplasmic transporter, DctQ - - - 0.00000000000000000000000001144 111.0
PJD3_k127_2873532_23 EamA-like transporter family - - - 0.000000000000000000000004047 121.0
PJD3_k127_2873532_3 Belongs to the GARS family K01945 - 6.3.4.13 4.681e-194 616.0
PJD3_k127_2873532_4 Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation K02021,K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 587.0
PJD3_k127_2873532_5 Trap dicarboxylate transporter, dctm subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 565.0
PJD3_k127_2873532_6 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000258 537.0
PJD3_k127_2873532_7 FAD dependent oxidoreductase K19746 - 1.4.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 470.0
PJD3_k127_2873532_8 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007775 460.0
PJD3_k127_2873532_9 D-isomer specific 2-hydroxyacid dehydrogenase K03778 - 1.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 406.0
PJD3_k127_2887520_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 2.607e-202 681.0
PJD3_k127_2887520_1 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 521.0
PJD3_k127_2887520_2 Aminoglycoside phosphotransferase K07102 - 2.7.1.221 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008663 446.0
PJD3_k127_2887520_3 Nucleotidyl transferase K00992 - 2.7.7.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 286.0
PJD3_k127_2887520_4 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.000000000000000000002322 102.0
PJD3_k127_2888057_0 AcrB/AcrD/AcrF family - - - 0.0 1450.0
PJD3_k127_2888057_1 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001624 323.0
PJD3_k127_2895201_0 Involved in the TonB-independent uptake of proteins K03641 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 519.0
PJD3_k127_2895201_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006915 334.0
PJD3_k127_2895201_2 PFAM MotA TolQ ExbB proton channel K03562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002467 288.0
PJD3_k127_2895201_3 Belongs to the ompA family K03640 - - 0.000000000000000000000000000000000000000000000000003347 188.0
PJD3_k127_2895201_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000000000000000000000000000000000000002678 188.0
PJD3_k127_2895201_5 Tol-Pal system-associated acyl-CoA thioesterase K07107 - - 0.0000000000000000000000000000001278 137.0
PJD3_k127_2895201_6 TonB C terminal K03646 - - 0.00000000000000000000000003724 119.0
PJD3_k127_2895201_7 Pfam Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000000009471 117.0
PJD3_k127_2903714_0 Alkyl hydroperoxide reductase K03387 - - 1.362e-247 778.0
PJD3_k127_2903714_1 Multicopper oxidase K22348 - 1.16.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 383.0
PJD3_k127_2903714_2 C-terminal domain of 1-Cys peroxiredoxin K03386 GO:0003674,GO:0003824,GO:0004601,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009321,GO:0009605,GO:0009636,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0016209,GO:0016491,GO:0016667,GO:0016671,GO:0016684,GO:0019725,GO:0030003,GO:0031667,GO:0031668,GO:0031669,GO:0032843,GO:0032991,GO:0033194,GO:0033195,GO:0033212,GO:0033214,GO:0033554,GO:0042221,GO:0042592,GO:0042594,GO:0042802,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0097237,GO:0098754,GO:0098771,GO:0098869,GO:1901700,GO:1902494,GO:1990204,GO:1990748 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 343.0
PJD3_k127_2903714_3 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003226 345.0
PJD3_k127_2903714_4 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002638 325.0
PJD3_k127_2903714_5 Copper binding periplasmic protein CusF - - - 0.00000000000000000000000003489 111.0
PJD3_k127_2903714_6 LTXXQ motif family protein - - - 0.00000000000006515 80.0
PJD3_k127_2933813_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003556 529.0
PJD3_k127_2933813_1 Protein of unknown function (DUF2953) - - - 0.000000000000000000000000000000000000000000000000000003902 196.0
PJD3_k127_2933813_2 Sporulation protein YtfJ (Spore_YtfJ) - - - 0.00000000000000000000000000000000000000000000001052 173.0
PJD3_k127_2935221_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1283.0
PJD3_k127_2935221_1 NADH flavin oxidoreductase NADH oxidase K00219 - 1.3.1.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005263 457.0
PJD3_k127_2935221_2 Probable molybdopterin binding domain K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009735 381.0
PJD3_k127_2935221_3 PFAM molybdopterin biosynthesis MoaE K03635 - 2.8.1.12 0.0000000000000000000000000000000000000000000000000000000001769 211.0
PJD3_k127_2935221_4 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.000000000000000000000000000000004885 134.0
PJD3_k127_2935221_5 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0000000000000000000000008672 105.0
PJD3_k127_2935221_6 Regulatory protein, FmdB family - - - 0.0000000002902 61.0
PJD3_k127_2941989_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 1.146e-236 743.0
PJD3_k127_2941989_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 361.0
PJD3_k127_2941989_2 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000001722 126.0
PJD3_k127_2941989_3 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.0000000000000000000000000006997 120.0
PJD3_k127_2941989_4 Belongs to the transcriptional regulatory Fis family K03557 - - 0.00000000000000000001357 100.0
PJD3_k127_2946046_0 FAD linked oxidase domain protein - - - 0.0 1907.0
PJD3_k127_2946046_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 2.829e-235 736.0
PJD3_k127_2946046_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 524.0
PJD3_k127_2946046_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 482.0
PJD3_k127_2946046_4 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000006222 237.0
PJD3_k127_2946046_5 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K19200 - - 0.000000000000000000000000000000000000000000000000000000000000000006333 243.0
PJD3_k127_2946046_6 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000006365 189.0
PJD3_k127_2946046_7 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000001674 173.0
PJD3_k127_2946046_8 HIT domain - - - 0.00000000000000000000000000000000000000000005414 166.0
PJD3_k127_2946046_9 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000005928 163.0
PJD3_k127_297920_0 COG4664 TRAP-type mannitol chloroaromatic compound transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005601 581.0
PJD3_k127_297920_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 308.0
PJD3_k127_297920_2 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000000000000000000000000000000000000004235 216.0
PJD3_k127_297920_3 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000001204 147.0
PJD3_k127_297920_4 Alpha beta hydrolase fold - - - 0.0000000000000000000006186 96.0
PJD3_k127_2985345_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000663 536.0
PJD3_k127_2985345_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004774 299.0
PJD3_k127_2985345_2 Alpha beta hydrolase K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000007517 248.0
PJD3_k127_300601_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 GO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016866,GO:0017076,GO:0017111,GO:0019001,GO:0019637,GO:0019693,GO:0019842,GO:0031419,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0034784,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0046872,GO:0046906,GO:0047727,GO:0048037,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564 5.4.99.13 0.0 1710.0
PJD3_k127_300601_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 589.0
PJD3_k127_300601_10 Ammonium Transporter Family K03320 - - 0.000000000000000000000000000000003984 129.0
PJD3_k127_300601_11 pts system fructose subfamily IIa component K02821 - 2.7.1.194 0.000000000000000000000000000003195 126.0
PJD3_k127_300601_12 phosphocarrier, HPr family K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000002273 115.0
PJD3_k127_300601_2 Histidine kinase K13040 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009871 561.0
PJD3_k127_300601_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 542.0
PJD3_k127_300601_4 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004983 388.0
PJD3_k127_300601_5 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 361.0
PJD3_k127_300601_6 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001381 282.0
PJD3_k127_300601_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001622 238.0
PJD3_k127_300601_8 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000002406 229.0
PJD3_k127_300601_9 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000004192 226.0
PJD3_k127_3022336_0 glutamine synthetase K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 1.34e-259 807.0
PJD3_k127_3022336_1 nitrogen regulation protein K07712 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0043565,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 572.0
PJD3_k127_3022336_10 Phosphopantetheine attachment site - - - 0.00000000000000000000003578 101.0
PJD3_k127_3022336_11 exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000006671 86.0
PJD3_k127_3022336_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 481.0
PJD3_k127_3022336_3 Serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004446 422.0
PJD3_k127_3022336_4 Signal transduction histidine kinase, nitrogen specific K07708 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 369.0
PJD3_k127_3022336_5 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 324.0
PJD3_k127_3022336_6 MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008232 267.0
PJD3_k127_3022336_7 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007243 273.0
PJD3_k127_3022336_8 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000003417 252.0
PJD3_k127_3022336_9 - - - - 0.000000000000000000000000000000000007367 141.0
PJD3_k127_3129041_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K18361 - 1.17.5.1,3.1.2.25 0.0 1262.0
PJD3_k127_3129041_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 3.023e-218 685.0
PJD3_k127_3129041_10 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000001336 158.0
PJD3_k127_3129041_11 transcriptional regulator - - - 0.00000000000000000000000000000000000001326 149.0
PJD3_k127_3129041_2 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 519.0
PJD3_k127_3129041_3 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 453.0
PJD3_k127_3129041_4 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003555 372.0
PJD3_k127_3129041_5 4Fe-4S binding domain K18362 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 367.0
PJD3_k127_3129041_6 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 349.0
PJD3_k127_3129041_7 Hemerythrin HHE cation binding domain K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007681 294.0
PJD3_k127_3129041_8 Divalent heavy-metal cations transporter K16267 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000182 270.0
PJD3_k127_3129041_9 DMSO reductase anchor subunit (DmsC) K18363 - - 0.00000000000000000000000000000000000000000000009464 179.0
PJD3_k127_3142995_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 8.659e-229 713.0
PJD3_k127_3142995_1 Fungal trichothecene efflux pump (TRI12) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 378.0
PJD3_k127_3142995_2 PFAM MaoC domain protein dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000009379 218.0
PJD3_k127_3241636_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003002 501.0
PJD3_k127_3241636_1 Glycosyltransferase like family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003588 389.0
PJD3_k127_3241636_2 formate dehydrogenase K00127 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 293.0
PJD3_k127_3241636_3 YdjC-like protein - - - 0.000000000000000000000000000000000003279 154.0
PJD3_k127_3241636_4 PFAM GtrA family protein - - - 0.00000000000000004348 85.0
PJD3_k127_3290297_0 ABC transporter - - - 2.579e-285 884.0
PJD3_k127_3290297_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 4.893e-280 877.0
PJD3_k127_3290297_10 Amidinotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000722 328.0
PJD3_k127_3290297_11 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 331.0
PJD3_k127_3290297_12 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000179 274.0
PJD3_k127_3290297_13 NAD(P)H-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000002811 231.0
PJD3_k127_3290297_14 helix_turn_helix ASNC type K03719 - - 0.0000000000000000000000000000000000000000000000000000000001221 207.0
PJD3_k127_3290297_15 - - - - 0.00000000000000000000000000000000000000000000000000001132 198.0
PJD3_k127_3290297_16 Universal stress protein family - - - 0.0000000000000000000000000000000000000000000000004261 187.0
PJD3_k127_3290297_17 response regulator - - - 0.0000000000000000000000000000000001547 141.0
PJD3_k127_3290297_18 TIGRFAM yecA family protein K07039 - - 0.00000000000000000000005069 107.0
PJD3_k127_3290297_19 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000000000001291 75.0
PJD3_k127_3290297_2 COG0210 Superfamily I DNA and RNA helicases K03657 - 3.6.4.12 5.171e-234 745.0
PJD3_k127_3290297_3 Ethylbenzene dehydrogenase - - - 7.707e-202 636.0
PJD3_k127_3290297_4 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007221 591.0
PJD3_k127_3290297_5 Aminotransferase class-III K00819 - 2.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 570.0
PJD3_k127_3290297_6 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211 467.0
PJD3_k127_3290297_7 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009265 399.0
PJD3_k127_3290297_8 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004052 400.0
PJD3_k127_3290297_9 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 359.0
PJD3_k127_3294338_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 1.558e-275 866.0
PJD3_k127_3294338_1 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 1.018e-272 850.0
PJD3_k127_3294338_2 peptidase U62, modulator of DNA gyrase K03592 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 546.0
PJD3_k127_3294338_3 dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 310.0
PJD3_k127_3294338_4 Molybdenum cofactor biosynthesis protein K03831 - 2.7.7.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006854 284.0
PJD3_k127_3294338_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004509 259.0
PJD3_k127_3294338_6 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000000000000000000000000000000005103 252.0
PJD3_k127_3294338_7 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.00000000000000000000000000000000000000000000000000000000000000002655 229.0
PJD3_k127_3294338_8 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000004659 116.0
PJD3_k127_3294338_9 Protein of unknown function (DUF615) K09889 - - 0.00000000000000000000008345 105.0
PJD3_k127_3298019_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 4.246e-221 689.0
PJD3_k127_3298019_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 458.0
PJD3_k127_3298019_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 331.0
PJD3_k127_3298019_3 pilus assembly protein FimV K08086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000155 327.0
PJD3_k127_3298019_4 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 301.0
PJD3_k127_3298019_5 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000004322 211.0
PJD3_k127_3298019_6 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000004218 162.0
PJD3_k127_3298703_0 Fumarate reductase flavoprotein C-term K00244 - 1.3.5.4 1.988e-206 649.0
PJD3_k127_3298703_1 Transcriptional regulator K13635 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005903 436.0
PJD3_k127_3298703_2 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 438.0
PJD3_k127_3298703_3 2Fe-2S iron-sulfur cluster binding domain K00245 - 1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221 380.0
PJD3_k127_3298703_4 Fumarate reductase subunit C K00246 - - 0.00000000000000000000000000000000000008785 155.0
PJD3_k127_3298703_5 Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane K00247 - - 0.0000000000000000000000000000000000001492 145.0
PJD3_k127_3304269_0 Thioesterase-like superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000004012 241.0
PJD3_k127_3304269_1 - - - - 0.00000000000000000002906 93.0
PJD3_k127_3304269_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.00000008807 61.0
PJD3_k127_3304493_0 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001146 467.0
PJD3_k127_3304493_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000738 160.0
PJD3_k127_3304493_2 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000000000000000005097 151.0
PJD3_k127_3304493_3 Glycine zipper 2TM domain K04062 - - 0.00000000000000000004719 93.0
PJD3_k127_3304493_4 - - - - 0.00000000001924 70.0
PJD3_k127_3312417_0 PFAM AMP-dependent synthetase and ligase K18661 - - 1.23e-215 688.0
PJD3_k127_3312417_1 PFAM Malonyl-CoA decarboxylase K01578 - 4.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007203 448.0
PJD3_k127_3312417_2 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 364.0
PJD3_k127_3312417_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 362.0
PJD3_k127_3312417_4 EVE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005223 241.0
PJD3_k127_3313238_0 extracellular solute-binding protein, family 3 K02030,K09969,K10001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 543.0
PJD3_k127_3313238_1 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002592 323.0
PJD3_k127_3313238_2 hydrolases of the HAD superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005662 314.0
PJD3_k127_3313238_3 EamA-like transporter family - - - 0.0000000000000000000000000000002141 128.0
PJD3_k127_3315469_0 Atp-dependent helicase K03578 - 3.6.4.13 0.0 1409.0
PJD3_k127_3315469_1 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 1.125e-204 660.0
PJD3_k127_3315469_10 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000006817 260.0
PJD3_k127_3315469_11 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000003484 255.0
PJD3_k127_3315469_12 Etoposide-induced protein 2.4 (EI24) - - - 0.000000000000000000000000000000000000000001413 171.0
PJD3_k127_3315469_13 Nudix hydrolase - - - 0.000000000000000000000000000000000000000008002 156.0
PJD3_k127_3315469_14 YdjC-like protein K03478 - 3.5.1.105 0.00000000000000000000000000000000000000001383 158.0
PJD3_k127_3315469_15 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000003713 157.0
PJD3_k127_3315469_16 TIGRFAM phasin family protein - - - 0.00000000000000000000000000000000001252 142.0
PJD3_k127_3315469_2 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 574.0
PJD3_k127_3315469_3 Protein of unknown function (DUF4080) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005672 558.0
PJD3_k127_3315469_4 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005596 417.0
PJD3_k127_3315469_5 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 372.0
PJD3_k127_3315469_6 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 357.0
PJD3_k127_3315469_7 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000974 342.0
PJD3_k127_3315469_8 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 313.0
PJD3_k127_3315469_9 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 316.0
PJD3_k127_3318675_0 flavoprotein involved in K transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 497.0
PJD3_k127_3318675_1 Homocysteine S-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 387.0
PJD3_k127_3318675_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 298.0
PJD3_k127_3318675_3 Aminotransferase class-V - - - 0.000000000000000002798 91.0
PJD3_k127_3330968_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1068.0
PJD3_k127_3330968_1 GTP-binding protein K06207 - - 0.0 1004.0
PJD3_k127_3330968_10 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000006585 145.0
PJD3_k127_3330968_11 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000003873 134.0
PJD3_k127_3330968_12 - - - - 0.00000000001185 64.0
PJD3_k127_3330968_2 Aldehyde dehydrogenase K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.727e-234 732.0
PJD3_k127_3330968_3 Participates in both transcription termination and antitermination K02600 - - 2.788e-233 730.0
PJD3_k127_3330968_4 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 411.0
PJD3_k127_3330968_5 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 363.0
PJD3_k127_3330968_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 312.0
PJD3_k127_3330968_7 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000000000000944 237.0
PJD3_k127_3330968_8 2-hydroxychromene-2-carboxylate isomerase K14584 - 5.99.1.4 0.00000000000000000000000000000000000000000000000000000000000009081 219.0
PJD3_k127_3330968_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000001862 151.0
PJD3_k127_3331760_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0 1560.0
PJD3_k127_3331760_1 Hydantoinase B/oxoprolinase K01469 - 3.5.2.9 1.061e-292 912.0
PJD3_k127_3331760_2 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008314 499.0
PJD3_k127_3331760_3 Catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001244 422.0
PJD3_k127_3331760_4 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 354.0
PJD3_k127_3331760_5 bacterial OsmY and nodulation domain K04065 - - 0.0000000000000000000000000007976 116.0
PJD3_k127_3331760_6 BON domain - - - 0.00000000000000000005475 92.0
PJD3_k127_3333500_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain - - - 0.0 1210.0
PJD3_k127_3333500_1 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 3.688e-272 846.0
PJD3_k127_3333500_10 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008549 534.0
PJD3_k127_3333500_11 Methylase of polypeptide chain release factors - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 510.0
PJD3_k127_3333500_12 MFS/sugar transport protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008141 514.0
PJD3_k127_3333500_13 TRAP-type C4-dicarboxylate transport system periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 488.0
PJD3_k127_3333500_14 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007271 491.0
PJD3_k127_3333500_15 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 439.0
PJD3_k127_3333500_16 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 430.0
PJD3_k127_3333500_17 PFAM beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000729 436.0
PJD3_k127_3333500_18 Protein of unknown function (DUF1365) K09701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000636 390.0
PJD3_k127_3333500_19 Asparaginase K13051 - 3.4.19.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000623 348.0
PJD3_k127_3333500_2 domain, Protein - - - 4.495e-241 762.0
PJD3_k127_3333500_20 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 340.0
PJD3_k127_3333500_21 Outer membrane lipoprotein-sorting protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 345.0
PJD3_k127_3333500_22 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 325.0
PJD3_k127_3333500_23 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004654 326.0
PJD3_k127_3333500_24 B12 binding domain K22491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 317.0
PJD3_k127_3333500_25 Protein of unknown function (DUF3833) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009852 295.0
PJD3_k127_3333500_26 acetyltransferase, isoleucine patch superfamily K21379 - 2.3.1.209 0.00000000000000000000000000000000000000000000000000000000000000000000000000001762 263.0
PJD3_k127_3333500_27 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004877 261.0
PJD3_k127_3333500_28 Double sensory domain of two-component sensor kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000005556 256.0
PJD3_k127_3333500_29 conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.000000000000000000000000000000000000000000000000000000000000006426 246.0
PJD3_k127_3333500_3 Flavin containing amine oxidoreductase - - - 3.719e-211 666.0
PJD3_k127_3333500_30 Protein of unknown function (DUF3014) - - - 0.00000000000000000000000000000000000000000000000000000000000008178 229.0
PJD3_k127_3333500_31 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000000000000000000144 218.0
PJD3_k127_3333500_32 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000000002297 188.0
PJD3_k127_3333500_33 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000005427 185.0
PJD3_k127_3333500_34 4-alpha-L-fucosyltransferase glycosyl transferase group 56 - - - 0.00000000000000000000000000000000000000000000001109 187.0
PJD3_k127_3333500_35 Chalcone isomerase-like - - - 0.0000000000000000000000000000000000000000000000227 177.0
PJD3_k127_3333500_36 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000000005513 179.0
PJD3_k127_3333500_37 SnoaL-like domain K01822 - 5.3.3.1 0.0000000000000000000000000000000000000000000008733 179.0
PJD3_k127_3333500_38 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000007291 179.0
PJD3_k127_3333500_39 Belongs to the small heat shock protein (HSP20) family - - - 0.00000000000000000000000000000000000000000893 162.0
PJD3_k127_3333500_4 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 2.164e-210 661.0
PJD3_k127_3333500_40 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000009912 147.0
PJD3_k127_3333500_41 Cold shock protein domain K03704 - - 0.000000000000000000000000000000006594 131.0
PJD3_k127_3333500_5 TRAP-type C4-dicarboxylate transport system, large permease - - - 1.641e-204 649.0
PJD3_k127_3333500_6 Cyclopropane fatty acid synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 610.0
PJD3_k127_3333500_7 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001128 566.0
PJD3_k127_3333500_8 FtsX-like permease family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002865 567.0
PJD3_k127_3333500_9 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 539.0
PJD3_k127_3341874_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 4.185e-209 657.0
PJD3_k127_3341874_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 2.787e-201 635.0
PJD3_k127_3341874_10 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008353 297.0
PJD3_k127_3341874_11 Belongs to the BI1 family K19416 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001167 250.0
PJD3_k127_3341874_12 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000001406 234.0
PJD3_k127_3341874_13 Type IV pilus biogenesis K02656 - - 0.00000000000000000000000000000000000000000000000000000000000000004144 237.0
PJD3_k127_3341874_14 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.00000000000000000000000000000000000000000000000000000000000002541 223.0
PJD3_k127_3341874_15 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000000000000000000000000006881 217.0
PJD3_k127_3341874_16 Tetratricopeptide repeat-like domain - - - 0.000000000000000000000000000000000000000000000000000000008697 207.0
PJD3_k127_3341874_17 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.000000000000000000000000000000000000006345 147.0
PJD3_k127_3341874_18 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000000000000000216 134.0
PJD3_k127_3341874_19 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.00000000000823 67.0
PJD3_k127_3341874_2 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 589.0
PJD3_k127_3341874_3 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 521.0
PJD3_k127_3341874_4 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 505.0
PJD3_k127_3341874_5 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002044 445.0
PJD3_k127_3341874_6 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 426.0
PJD3_k127_3341874_7 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000708 397.0
PJD3_k127_3341874_8 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 349.0
PJD3_k127_3341874_9 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006177 339.0
PJD3_k127_3344202_0 Biotin carboxylase C-terminal domain K01965 - 6.4.1.3 0.0 1043.0
PJD3_k127_3344202_1 Required for chromosome condensation and partitioning K03529 - - 5e-324 1028.0
PJD3_k127_3344202_10 peptidylprolyl isomerase K03770 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 511.0
PJD3_k127_3344202_11 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 451.0
PJD3_k127_3344202_12 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006994 438.0
PJD3_k127_3344202_13 Methionine aminopeptidase K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008627 425.0
PJD3_k127_3344202_14 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 396.0
PJD3_k127_3344202_15 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005317 387.0
PJD3_k127_3344202_16 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 379.0
PJD3_k127_3344202_17 Belongs to the GST superfamily K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001915 362.0
PJD3_k127_3344202_18 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 357.0
PJD3_k127_3344202_19 Rhodanese Homology Domain K06917 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 361.0
PJD3_k127_3344202_2 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 4.487e-308 967.0
PJD3_k127_3344202_20 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 308.0
PJD3_k127_3344202_21 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 304.0
PJD3_k127_3344202_22 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000003662 267.0
PJD3_k127_3344202_23 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003715 265.0
PJD3_k127_3344202_24 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003177 253.0
PJD3_k127_3344202_25 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K01759 - 4.4.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000001495 248.0
PJD3_k127_3344202_26 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K06879,K09457 - 1.7.1.13 0.0000000000000000000000000000000000000000000000000000000001392 207.0
PJD3_k127_3344202_27 Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins - - - 0.0000000000000000000000000000000000000000000000000001981 200.0
PJD3_k127_3344202_28 Protein of unknown function (DUF1178) - - - 0.000000000000000000000000000000000000000007174 158.0
PJD3_k127_3344202_3 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 4.385e-303 931.0
PJD3_k127_3344202_4 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 2.111e-236 751.0
PJD3_k127_3344202_5 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 559.0
PJD3_k127_3344202_6 Aminoglycoside phosphotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006936 536.0
PJD3_k127_3344202_7 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009877 532.0
PJD3_k127_3344202_8 PFAM aminotransferase class I and II K14267 - 2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006263 519.0
PJD3_k127_3344202_9 of ABC transporters with duplicated ATPase domains K06158 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 529.0
PJD3_k127_3353185_0 Peptidase M48 Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 380.0
PJD3_k127_3353185_1 Protein of unknown function (DUF808) K09781 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 350.0
PJD3_k127_3353185_2 Protein of unknown function (DUF1847) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007196 313.0
PJD3_k127_3353185_3 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003263 283.0
PJD3_k127_3353185_4 SCO1/SenC K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000004203 227.0
PJD3_k127_3353185_5 - - - - 0.00000000000000000000000000000000000000000000000000000000004022 213.0
PJD3_k127_3353185_6 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000005584 201.0
PJD3_k127_3353185_7 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000000000000000000000007505 157.0
PJD3_k127_3353185_8 - - - - 0.0000000000000000000000000000000000002208 154.0
PJD3_k127_3362140_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 5.197e-251 779.0
PJD3_k127_3362140_1 (GMC) oxidoreductase K00108 - 1.1.99.1 1.058e-231 729.0
PJD3_k127_3362140_2 Pyridoxal phosphate biosynthetic protein PdxA K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 320.0
PJD3_k127_3362140_3 2-keto-4-pentenoate hydratase K01617 - 4.1.1.77 0.0000000000000000000000000000000000000000000000000000004022 202.0
PJD3_k127_3362140_4 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.0000000000002119 72.0
PJD3_k127_339032_0 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848,K20906 - 5.4.99.2,5.4.99.64 1.724e-280 873.0
PJD3_k127_339032_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 2.048e-233 729.0
PJD3_k127_339032_2 ArgK protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 332.0
PJD3_k127_339032_3 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006157 265.0
PJD3_k127_339032_4 COG2185 Methylmalonyl-CoA mutase, C-terminal domain subunit (cobalamin-binding) K01849,K20907 - 5.4.99.2,5.4.99.64 0.0000000000000000000000000000000000000000000000000000000003759 205.0
PJD3_k127_339032_5 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000000000000000000000000000000000000001012 215.0
PJD3_k127_339032_6 FCD - - - 0.000000000000000000000000000000000000000000000000000005693 196.0
PJD3_k127_339032_7 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000302 202.0
PJD3_k127_339032_8 Domain of unknown function (DUF4389) - - - 0.0000000000000000002331 90.0
PJD3_k127_3391727_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 534.0
PJD3_k127_3391727_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 349.0
PJD3_k127_3391727_2 surface antigen K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000003558 252.0
PJD3_k127_3391727_3 Dodecin K09165 - - 0.0000000000000000001093 90.0
PJD3_k127_3402266_0 Peptidase M48 Ste24p - - - 0.00000000000000000000000000000000000000000000000000000000003536 228.0
PJD3_k127_3402266_1 LemA family K03744 - - 0.00000000000000000000000002716 110.0
PJD3_k127_3428461_0 GAF domain K21405 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008554 550.0
PJD3_k127_3428461_1 Zinc-binding dehydrogenase K13953,K18382 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000006176 205.0
PJD3_k127_3428461_2 Regulatory protein GntR HTH K05799 - - 0.00000000000000000000000000000000000000000000002525 180.0
PJD3_k127_3447243_0 penicillin amidase K01434 - 3.5.1.11 2.241e-245 784.0
PJD3_k127_3447243_1 type II secretion system protein E K02454 - - 8.005e-239 745.0
PJD3_k127_3447243_10 Binding-protein-dependent transport system inner membrane component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 301.0
PJD3_k127_3447243_11 General secretion pathway protein L K02461 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009779 296.0
PJD3_k127_3447243_12 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001896 291.0
PJD3_k127_3447243_13 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000001472 271.0
PJD3_k127_3447243_14 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000002055 236.0
PJD3_k127_3447243_15 General Secretory Pathway K02463 - - 0.0000000000000000000000000000000000000000000000000000000000004628 220.0
PJD3_k127_3447243_16 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000002486 216.0
PJD3_k127_3447243_17 general secretion pathway protein K K02460 - - 0.0000000000000000000000000000000000000000000000000000013 204.0
PJD3_k127_3447243_18 general secretion pathway protein K02457 - - 0.000000000000000000000000000000000000001659 152.0
PJD3_k127_3447243_19 DinB superfamily - - - 0.000000000000000000000000000000000000001694 154.0
PJD3_k127_3447243_2 general secretion pathway protein D K02453 - - 2.638e-226 727.0
PJD3_k127_3447243_20 General secretion pathway protein I K02458 - - 0.000000000000000000000000000000001333 135.0
PJD3_k127_3447243_21 general secretion pathway protein K02459 - - 0.000000000000000000000000000000007002 136.0
PJD3_k127_3447243_22 General secretion pathway K02462 - - 0.00000000000000000000003807 105.0
PJD3_k127_3447243_3 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 605.0
PJD3_k127_3447243_4 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 531.0
PJD3_k127_3447243_5 General secretion pathway protein F K02455 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 436.0
PJD3_k127_3447243_6 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 385.0
PJD3_k127_3447243_7 Histidine-specific methyltransferase, SAM-dependent - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002605 370.0
PJD3_k127_3447243_8 Lipocalin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 359.0
PJD3_k127_3447243_9 Binding-protein-dependent transport system inner membrane component K02042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003679 335.0
PJD3_k127_34992_0 Carbamoyl-phosphate synthetase ammonia chain K01955 - 6.3.5.5 0.0 1166.0
PJD3_k127_34992_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 4.91e-245 761.0
PJD3_k127_34992_2 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 286.0
PJD3_k127_34992_3 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000000000000002044 206.0
PJD3_k127_34992_4 CRS1_YhbY K07574 - - 0.0000000000000000000000001772 114.0
PJD3_k127_3504289_0 Ftsk_gamma K03466 - - 7.325e-302 947.0
PJD3_k127_3504289_1 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000528 200.0
PJD3_k127_3504289_2 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000000000000000000000000000000000001347 202.0
PJD3_k127_3504289_3 Transcriptional regulator K10914 - - 0.0000000000000002035 79.0
PJD3_k127_3539637_0 ribonuclease II K01147 - 3.1.13.1 4.291e-207 664.0
PJD3_k127_3539637_1 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007564 618.0
PJD3_k127_3539637_10 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.00000000000000000000000000000000000000000000000000003692 190.0
PJD3_k127_3539637_11 mRNA catabolic process - - - 0.00000000000000000000000000000000000000000000001221 180.0
PJD3_k127_3539637_12 Redoxin domain protein - - - 0.000000000000000000000000000000000000000000008476 169.0
PJD3_k127_3539637_13 Uncharacterized protein conserved in bacteria (DUF2062) K09928 - - 0.0000000000000000000000000000000004647 137.0
PJD3_k127_3539637_14 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000006876 108.0
PJD3_k127_3539637_2 MgtE intracellular N domain K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 575.0
PJD3_k127_3539637_3 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000238 332.0
PJD3_k127_3539637_4 PFAM Short-chain dehydrogenase reductase SDR K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 329.0
PJD3_k127_3539637_5 periplasmic protein TonB K03832 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 300.0
PJD3_k127_3539637_6 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003725 279.0
PJD3_k127_3539637_7 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000001801 271.0
PJD3_k127_3539637_8 Uncharacterised protein family (UPF0227) K07000 - - 0.0000000000000000000000000000000000000000000000000000000000000008423 235.0
PJD3_k127_3539637_9 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000003344 200.0
PJD3_k127_3544764_0 FAD dependent oxidoreductase K07077 - - 1.014e-222 702.0
PJD3_k127_3544764_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 481.0
PJD3_k127_3544764_2 Exodeoxyribonuclease III K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 419.0
PJD3_k127_3544764_3 - - - - 0.000000000000000000000000000000000000000000000000000000000002023 219.0
PJD3_k127_3568442_0 Belongs to the CarB family K01955 - 6.3.5.5 7.167e-212 660.0
PJD3_k127_3568442_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 6.725e-206 645.0
PJD3_k127_3568442_2 Belongs to the CarA family K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000285 578.0
PJD3_k127_3568442_3 PFAM L-carnitine dehydratase bile acid-inducible protein F K07749 - 2.8.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009403 546.0
PJD3_k127_3568442_4 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 471.0
PJD3_k127_3568442_5 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 294.0
PJD3_k127_3568442_6 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000008947 183.0
PJD3_k127_3568442_7 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000000000000000000000000000005898 180.0
PJD3_k127_3572058_0 Belongs to the ABC transporter superfamily K17325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004634 391.0
PJD3_k127_3572058_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 385.0
PJD3_k127_3572058_2 ATPases associated with a variety of cellular activities K17324 - - 0.0000000000000000000000000000000004833 136.0
PJD3_k127_3694566_0 3-keto-5-aminohexanoate cleavage protein K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 530.0
PJD3_k127_3694566_1 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 373.0
PJD3_k127_3694566_10 Patatin-like phospholipase K07001 - - 0.000000000000000000000000000000000000000000006197 178.0
PJD3_k127_3694566_11 FCD - - - 0.0000000000000000000000000000000000000000001095 169.0
PJD3_k127_3694566_12 PFAM glycosyl transferase family 39 - - - 0.00000000000000000000000000000000000004 147.0
PJD3_k127_3694566_13 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000004601 112.0
PJD3_k127_3694566_14 Histidine kinase-like ATPase domain - - - 0.0000000000000006512 84.0
PJD3_k127_3694566_15 PFAM Sulfate transporter antisigma-factor antagonist STAS - - - 0.0000000008905 65.0
PJD3_k127_3694566_2 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 295.0
PJD3_k127_3694566_3 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 295.0
PJD3_k127_3694566_4 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001155 275.0
PJD3_k127_3694566_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004631 283.0
PJD3_k127_3694566_6 GGDEF domain K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000001161 242.0
PJD3_k127_3694566_7 Esterase of the alpha-beta hydrolase superfamily K07001 - - 0.000000000000000000000000000000000000000000000000000000004184 209.0
PJD3_k127_3694566_8 Haem-degrading - - - 0.0000000000000000000000000000000000000000000000000000003554 196.0
PJD3_k127_3694566_9 cheY-homologous receiver domain - - - 0.00000000000000000000000000000000000000000000000000005501 189.0
PJD3_k127_3723548_0 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000003733 255.0
PJD3_k127_3724095_0 histidine kinase, dimerisation and phosphoacceptor region K05962 - 2.7.13.1 0.000000000000000000000000000000000000000000000000000002234 193.0
PJD3_k127_3724095_3 AI-2E family transporter - - - 0.00000000000000000000000001395 109.0
PJD3_k127_3724095_4 - - - - 0.0000000000000004784 82.0
PJD3_k127_3724095_5 Protein of unknown function (DUF1328) - - - 0.0000000000000007703 81.0
PJD3_k127_3803484_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 0.0 1031.0
PJD3_k127_3803484_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 575.0
PJD3_k127_3803484_2 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 500.0
PJD3_k127_3803484_3 May be involved in recombinational repair of damaged DNA K03631 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 488.0
PJD3_k127_3803484_4 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 452.0
PJD3_k127_3803484_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007065 447.0
PJD3_k127_3803484_6 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 322.0
PJD3_k127_3803484_7 Small-conductance mechanosensitive channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 328.0
PJD3_k127_3803484_8 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.0000000000000000000000000000000000000000000001803 174.0
PJD3_k127_3803484_9 Universal stress protein family - - - 0.000000000000000000000000000002294 125.0
PJD3_k127_3946946_0 ABC-type branched-chain amino acid transport system, periplasmic component K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 540.0
PJD3_k127_3946946_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 515.0
PJD3_k127_3946946_2 PFAM Band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 430.0
PJD3_k127_3946946_3 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000004624 225.0
PJD3_k127_3946946_4 Oligoketide cyclase lipid transport protein - - - 0.00000000000000000000000000000000000000000002016 166.0
PJD3_k127_3946946_5 NfeD-like C-terminal, partner-binding - - - 0.0000000000000000000002181 101.0
PJD3_k127_3946946_6 Domain of unknown function (DUF4124) - - - 0.00000000491 64.0
PJD3_k127_3947780_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.0 1531.0
PJD3_k127_3947780_1 Shikimate kinase K00851 - 2.7.1.12 0.000000000000000000000000000000000000000000000000000008914 194.0
PJD3_k127_3947780_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000001197 58.0
PJD3_k127_3949486_0 3-hydroxyacyl-CoA dehydrogenase NAD-binding K07516 - 1.1.1.35 5.07e-312 969.0
PJD3_k127_3949486_1 Belongs to the thiolase family K00626 - 2.3.1.9 1.257e-195 617.0
PJD3_k127_3949486_2 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 371.0
PJD3_k127_3949486_3 ABC transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 381.0
PJD3_k127_3949486_4 abc transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 351.0
PJD3_k127_3959478_0 His Kinase A (phospho-acceptor) domain - - - 0.0 1285.0
PJD3_k127_3959478_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 2.299e-308 958.0
PJD3_k127_3959478_10 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000009032 183.0
PJD3_k127_3959478_11 Tetratricopeptide TPR_2 repeat protein - - - 0.00000000000000000000000000000000001116 145.0
PJD3_k127_3959478_12 membrane - - - 0.0000000000000000000000000000000004418 133.0
PJD3_k127_3959478_13 LytR cell envelope-related transcriptional attenuator - - - 0.0000000000000000000001034 106.0
PJD3_k127_3959478_14 - - - - 0.00000000000000000001614 94.0
PJD3_k127_3959478_15 - - - - 0.0000000000000001869 81.0
PJD3_k127_3959478_2 DNA polymerase III K02342 - 2.7.7.7 9.952e-267 840.0
PJD3_k127_3959478_3 transport system, fused permease components - - - 1.76e-217 691.0
PJD3_k127_3959478_4 Thiamine pyrophosphate enzyme, central domain K04103 - 4.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 604.0
PJD3_k127_3959478_5 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 561.0
PJD3_k127_3959478_6 TRAP transporter solute receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006917 367.0
PJD3_k127_3959478_7 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.0000000000000000000000000000000000000000000000000000000000000000004342 243.0
PJD3_k127_3959478_8 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000005204 241.0
PJD3_k127_3959478_9 PFAM response regulator receiver K02483,K07666,K07774 - - 0.0000000000000000000000000000000000000000000000000000000408 203.0
PJD3_k127_3963382_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 5.294e-211 667.0
PJD3_k127_3963382_1 glutathione s-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 297.0
PJD3_k127_3963382_3 - - - - 0.0000000000002814 71.0
PJD3_k127_3963738_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 2371.0
PJD3_k127_3963738_1 COG0480 Translation elongation factors (GTPases) K02355 - - 2.282e-306 968.0
PJD3_k127_3963738_10 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 422.0
PJD3_k127_3963738_11 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 414.0
PJD3_k127_3963738_12 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007668 417.0
PJD3_k127_3963738_13 enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001864 355.0
PJD3_k127_3963738_14 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 333.0
PJD3_k127_3963738_15 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 334.0
PJD3_k127_3963738_16 lytic murein transglycosylase K08305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003419 312.0
PJD3_k127_3963738_17 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000006929 275.0
PJD3_k127_3963738_18 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006417 282.0
PJD3_k127_3963738_19 3'-to-5' exoribonuclease specific for small oligoribonucleotides K13288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000669 278.0
PJD3_k127_3963738_2 PFAM Acyl-CoA dehydrogenase N terminal, Acyl-CoA dehydrogenase, C-terminal domain, Acyl-CoA dehydrogenase, middle domain, Acyl-CoA dehydrogenase, N-terminal domain K20035 - - 7.649e-257 804.0
PJD3_k127_3963738_20 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000131 251.0
PJD3_k127_3963738_21 Nudix hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000009121 240.0
PJD3_k127_3963738_22 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.00000000000000000000000000000000000000000000000000000000004128 208.0
PJD3_k127_3963738_23 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.0000000000000000000000000000000000000000000000000000000000566 225.0
PJD3_k127_3963738_24 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000000000000000000001857 190.0
PJD3_k127_3963738_25 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000001247 187.0
PJD3_k127_3963738_26 PFAM ABC transporter related K02013 - 3.6.3.34 0.000000000000000000000000000000000000000000000005035 193.0
PJD3_k127_3963738_27 endoribonuclease - - - 0.000000000000000000000000000000000000000000002063 172.0
PJD3_k127_3963738_28 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000008737 156.0
PJD3_k127_3963738_29 Cytochrome c-type biogenesis protein K02200 - - 0.000000000000000000000000000000000000002002 163.0
PJD3_k127_3963738_3 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 2.564e-244 771.0
PJD3_k127_3963738_30 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000003776 153.0
PJD3_k127_3963738_31 Ribosomal protein L31 K02909 - - 0.00000000000000000000000000000001501 130.0
PJD3_k127_3963738_32 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000000001014 119.0
PJD3_k127_3963738_33 MarR family - - - 0.00000000000006467 77.0
PJD3_k127_3963738_34 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.000000001006 65.0
PJD3_k127_3963738_35 PFAM Uncharacterised protein family UPF0150 - - - 0.00000008262 57.0
PJD3_k127_3963738_4 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.537e-231 723.0
PJD3_k127_3963738_5 Domain of unknown function (DUF3488) K22452 - 2.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003117 560.0
PJD3_k127_3963738_6 Peptidase M48 K06013 - 3.4.24.84 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003118 509.0
PJD3_k127_3963738_7 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 446.0
PJD3_k127_3963738_8 Electron transfer flavoprotein K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 442.0
PJD3_k127_3963738_9 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007512 420.0
PJD3_k127_3968698_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 9.324e-297 916.0
PJD3_k127_3968698_1 Acetyl propionyl-CoA carboxylase, alpha subunit K01968 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.4.1.4 1.199e-235 745.0
PJD3_k127_3968698_10 - - - - 0.0000000000000000000000000000000000006387 142.0
PJD3_k127_3968698_11 COG1960 Acyl-CoA dehydrogenases - - - 0.00000000000000000000006344 98.0
PJD3_k127_3968698_2 TRAP transporter, 4TM 12TM fusion protein' - - - 2.037e-209 668.0
PJD3_k127_3968698_3 Acyclic terpene utilisation family protein AtuA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 503.0
PJD3_k127_3968698_4 Trap transporter solute receptor K07080 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007047 367.0
PJD3_k127_3968698_5 PFAM Enoyl-CoA hydratase isomerase K13766,K15312 - 4.2.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000001328 280.0
PJD3_k127_3968698_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004943 262.0
PJD3_k127_3968698_7 Auxin Efflux Carrier K07088 - - 0.0000000000000000000000000000000000000000000000000000000004447 213.0
PJD3_k127_3968698_8 YsiA-like protein, C-terminal region - - - 0.00000000000000000000000000000000000000000000000000009996 193.0
PJD3_k127_3968698_9 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000009868 189.0
PJD3_k127_3977131_0 PFAM isocitrate lyase and phosphorylmutase K01637 - 4.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 285.0
PJD3_k127_3977131_1 Flp pilus assembly protein RcpC/CpaB K02279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001739 258.0
PJD3_k127_3977131_2 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000000000000000000000000000001672 199.0
PJD3_k127_3977131_3 - - - - 0.0000000000000000000003014 98.0
PJD3_k127_3992232_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 4.094e-261 828.0
PJD3_k127_3992232_1 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 385.0
PJD3_k127_3992232_2 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 357.0
PJD3_k127_3992232_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005867 245.0
PJD3_k127_3992232_4 TIGRFAM periplasmic protein thiol disulphide oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000002721 211.0
PJD3_k127_3992232_5 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000000007914 186.0
PJD3_k127_3992232_6 subunit of a heme lyase K02200 - - 0.00000000000000000000000000004855 124.0
PJD3_k127_3992232_7 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.000000000000007913 76.0
PJD3_k127_3992232_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0009898,GO:0015886,GO:0016020,GO:0031224,GO:0031226,GO:0031235,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0071702,GO:0071705,GO:0071944,GO:0098552,GO:0098562,GO:1901678 - 0.0000008322 52.0
PJD3_k127_4005224_0 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 448.0
PJD3_k127_4005224_1 CBS domain containing protein K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004784 364.0
PJD3_k127_4005224_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000106 152.0
PJD3_k127_4005224_3 PFAM FecR protein - - - 0.000000000000000000001742 109.0
PJD3_k127_4005224_4 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.00000000000000008124 85.0
PJD3_k127_4013642_0 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 297.0
PJD3_k127_4013642_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008137,GO:0008150,GO:0008152,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0051179,GO:0051234,GO:0055114,GO:0098796,GO:1902494 1.6.5.8 0.0000000000000000000000000000000000000000000000216 176.0
PJD3_k127_4013642_2 electron transport chain K00347,K00348,K03614,K21162,K21163 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008152,GO:0010181,GO:0015672,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030001,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050662,GO:0051179,GO:0051234,GO:0055114,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 1.6.5.8 0.000000000000000000000000000000000005622 149.0
PJD3_k127_4027517_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009867 338.0
PJD3_k127_4027517_1 AAA domain - - - 0.00000000000000000000000000004289 134.0
PJD3_k127_4032285_0 5-oxoprolinase K01469 - 3.5.2.9 1.215e-208 659.0
PJD3_k127_4032285_1 PFAM TRAP dicarboxylate transporter- DctP subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 437.0
PJD3_k127_4032285_2 racemase activity, acting on amino acids and derivatives - - - 0.00000000000000000000000000000000000000000000000000000000001057 214.0
PJD3_k127_4032285_3 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.0000000000000000000000000000000000000000000000000000007584 200.0
PJD3_k127_4045170_0 Histidine kinase K05962 - 2.7.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 466.0
PJD3_k127_4045170_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009819 383.0
PJD3_k127_4045170_2 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 351.0
PJD3_k127_4045170_3 Glycine zipper 2TM domain - - - 0.000000000000000000000000000000000000448 148.0
PJD3_k127_4051823_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1208.0
PJD3_k127_4051823_1 Belongs to the peptidase S16 family - - - 2.692e-231 725.0
PJD3_k127_4051823_10 histidine kinase HAMP region domain protein K07638 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007812 284.0
PJD3_k127_4051823_11 Flavin containing amine oxidoreductase K21677 - 1.17.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000003275 257.0
PJD3_k127_4051823_12 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000002124 242.0
PJD3_k127_4051823_13 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.00000000000000000000000000000000000000000000000000000000000000002734 234.0
PJD3_k127_4051823_14 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000000000000000004775 157.0
PJD3_k127_4051823_15 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000000000000000000000000000003764 150.0
PJD3_k127_4051823_16 Acetyltransferase K03789,K14742 - 2.3.1.128 0.0000000000000000000000000007718 123.0
PJD3_k127_4051823_17 - - - - 0.0000000000007961 68.0
PJD3_k127_4051823_18 - - - - 0.000003583 49.0
PJD3_k127_4051823_2 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 3.799e-217 680.0
PJD3_k127_4051823_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 612.0
PJD3_k127_4051823_4 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 555.0
PJD3_k127_4051823_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006561 459.0
PJD3_k127_4051823_6 Squalene/phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 375.0
PJD3_k127_4051823_7 response regulator K02483,K07659 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003995 366.0
PJD3_k127_4051823_8 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 346.0
PJD3_k127_4051823_9 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 361.0
PJD3_k127_4056932_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1281.0
PJD3_k127_4056932_1 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 576.0
PJD3_k127_4056932_2 6-phosphogluconate dehydrogenase, NAD-binding K00020,K00042 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006573,GO:0006574,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0055114,GO:0070013,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.1.1.31,1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000099 455.0
PJD3_k127_4056932_3 PFAM ATP-binding region, ATPase domain protein K11711 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281 461.0
PJD3_k127_4056932_4 major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001294 290.0
PJD3_k127_4056932_5 helix_turn_helix, Lux Regulon K11712 - - 0.0000000000000000000000000000000000000000000000000000000001138 214.0
PJD3_k127_4056932_6 peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000004357 207.0
PJD3_k127_4056932_7 COGs COG4446 conserved - - - 0.00000000000000000000000001117 121.0
PJD3_k127_4056932_8 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000000000000008704 111.0
PJD3_k127_4148726_0 Acyclic terpene utilisation family protein AtuA - - - 8.714e-203 647.0
PJD3_k127_4148726_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004675 487.0
PJD3_k127_4148726_2 UbiA prenyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008154 380.0
PJD3_k127_4148726_3 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 348.0
PJD3_k127_4148726_4 YsiA-like protein, C-terminal region - - - 0.0000000000000000000000000000000000002554 148.0
PJD3_k127_4148920_0 Response regulator receiver modulated diguanylate cyclase phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 520.0
PJD3_k127_4148920_1 gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002768 346.0
PJD3_k127_4148920_2 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009996 335.0
PJD3_k127_4149624_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 3.921e-229 719.0
PJD3_k127_4149624_1 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 4.038e-216 691.0
PJD3_k127_4149624_2 2 iron, 2 sulfur cluster binding K00266,K00528,K02823 - 1.18.1.2,1.19.1.1,1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 468.0
PJD3_k127_4149624_3 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000001243 219.0
PJD3_k127_4149624_4 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.7.2.4 0.000000000000000000005923 93.0
PJD3_k127_4162490_0 TRAP transporter, 4TM 12TM fusion protein - - - 2.038e-270 850.0
PJD3_k127_4162490_1 Cysteine-rich domain - - - 2.195e-202 640.0
PJD3_k127_4162490_2 TRAP transporter solute receptor TAXI family K07080 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 443.0
PJD3_k127_4162490_3 PFAM Rubrerythrin - - - 0.000000000000000000000000000000000000000000000000000000000000000000002971 237.0
PJD3_k127_4162490_4 Protein of unknown function (DUF3501) - - - 0.00000000000000000000000000000000000000000000000000000000000000002545 229.0
PJD3_k127_4162490_5 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000113 128.0
PJD3_k127_4162490_6 Periplasmic domain of Sensor histidine kinase RisS K07638 - 2.7.13.3 0.0000000000000000000000000000004865 125.0
PJD3_k127_4239897_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 2.018e-299 929.0
PJD3_k127_4239897_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 2.04e-213 668.0
PJD3_k127_4239897_10 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 353.0
PJD3_k127_4239897_11 Sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 331.0
PJD3_k127_4239897_12 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 301.0
PJD3_k127_4239897_13 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 312.0
PJD3_k127_4239897_14 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 299.0
PJD3_k127_4239897_15 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003255 266.0
PJD3_k127_4239897_16 Belongs to the UPF0234 family K09767 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005705 248.0
PJD3_k127_4239897_17 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000001803 258.0
PJD3_k127_4239897_18 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000003349 228.0
PJD3_k127_4239897_19 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000001227 174.0
PJD3_k127_4239897_2 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 9.374e-202 645.0
PJD3_k127_4239897_20 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.00000000000000000000000000000000000000000004925 163.0
PJD3_k127_4239897_21 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000475 158.0
PJD3_k127_4239897_22 Rubrerythrin - - - 0.0000000000000000000000000000001962 139.0
PJD3_k127_4239897_23 Polyprenyl synthetase K00795 - 2.5.1.1,2.5.1.10 0.0000000000000000000000000006349 116.0
PJD3_k127_4239897_24 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000003796 75.0
PJD3_k127_4239897_25 KTSC domain - - - 0.000000000002469 73.0
PJD3_k127_4239897_3 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 546.0
PJD3_k127_4239897_4 TIGRFAM acetylornithine and succinylornithine K00821 - 2.6.1.11,2.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 541.0
PJD3_k127_4239897_5 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07538 - 1.1.1.368 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 496.0
PJD3_k127_4239897_6 PFAM aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 478.0
PJD3_k127_4239897_7 Belongs to the amidase family K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 427.0
PJD3_k127_4239897_8 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 400.0
PJD3_k127_4239897_9 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 402.0
PJD3_k127_4251432_0 Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second K01958 - 6.4.1.1 0.0 1627.0
PJD3_k127_4251432_1 Convertase P-domain protein K20755 - 3.4.21.121 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 374.0
PJD3_k127_4251432_2 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000362 269.0
PJD3_k127_4251432_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000002365 178.0
PJD3_k127_4251432_4 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000003637 159.0
PJD3_k127_4274707_0 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 381.0
PJD3_k127_4274707_1 dienelactone hydrolase - - - 0.00085 45.0
PJD3_k127_4325633_0 Cupin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 443.0
PJD3_k127_4325633_1 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007888 394.0
PJD3_k127_4325633_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319 338.0
PJD3_k127_4325633_3 Peptidase m28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002049 248.0
PJD3_k127_4327712_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1384.0
PJD3_k127_4327712_1 domain protein K03320 - - 5.651e-215 692.0
PJD3_k127_4327712_2 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 529.0
PJD3_k127_4327712_3 Phosphoenolpyruvate phosphomutase K01841 - 5.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 444.0
PJD3_k127_4327712_4 GntR family K03710 - - 0.000000000000000000000000000000000000000000000000000000003202 204.0
PJD3_k127_4327712_5 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000001448 206.0
PJD3_k127_4327712_6 protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000001679 129.0
PJD3_k127_4327712_7 Signal peptide protein - - - 0.000000000000000002117 92.0
PJD3_k127_438482_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 516.0
PJD3_k127_438482_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 491.0
PJD3_k127_438482_2 Alpha beta hydrolase K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004132 385.0
PJD3_k127_438482_3 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005796 350.0
PJD3_k127_438482_4 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 309.0
PJD3_k127_438482_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000006249 240.0
PJD3_k127_438482_6 Zinc-finger domain - - - 0.000000000000000009393 89.0
PJD3_k127_438482_7 Diguanylate cyclase - - - 0.00000007259 53.0
PJD3_k127_4403134_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 9.399e-228 726.0
PJD3_k127_4403134_1 Belongs to the MtfA family K09933 - - 0.00000000000000000000000000000000000000002618 158.0
PJD3_k127_4514871_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 561.0
PJD3_k127_4514871_1 Las17-binding protein actin regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 287.0
PJD3_k127_4514871_2 PFAM Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000006014 140.0
PJD3_k127_4514871_3 - - - - 0.0000000000000000000000005365 105.0
PJD3_k127_4514871_4 Membrane - - - 0.000000000000001849 81.0
PJD3_k127_4514871_5 - - - - 0.000000000000004415 75.0
PJD3_k127_4514871_6 Membrane - - - 0.00000000248 62.0
PJD3_k127_4608575_0 ABC transporter C-terminal domain K15738 - - 1.864e-239 756.0
PJD3_k127_4608575_1 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 4.364e-237 745.0
PJD3_k127_4608575_10 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000000000000000000003709 156.0
PJD3_k127_4608575_11 Twin-arginine translocation pathway signal protein - - - 0.0000000000000000000000000000000000005325 145.0
PJD3_k127_4608575_12 Protein of unknown function (DUF498/DUF598) - - - 0.000000000000000000000000000000002156 132.0
PJD3_k127_4608575_13 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000001233 107.0
PJD3_k127_4608575_14 Psort location Cytoplasmic, score 8.96 K00003 - 1.1.1.3 0.00000000000000000002986 95.0
PJD3_k127_4608575_15 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.0000000000000002156 85.0
PJD3_k127_4608575_2 GMC oxidoreductase - - - 4.64e-222 706.0
PJD3_k127_4608575_3 Aminotransferase K14261 - - 4.383e-218 683.0
PJD3_k127_4608575_4 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 1.247e-195 621.0
PJD3_k127_4608575_5 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 GO:0000166,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008854,GO:0009338,GO:0009987,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000001182 265.0
PJD3_k127_4608575_6 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000000000000000000000000000000000000000001083 191.0
PJD3_k127_4608575_7 binds to the 23S rRNA K02939 - - 0.00000000000000000000000000000000000000000000000000006592 194.0
PJD3_k127_4608575_8 UvrD/REP helicase N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000001407 199.0
PJD3_k127_4608575_9 PGAP1-like protein - - - 0.00000000000000000000000000000000000000000000001544 184.0
PJD3_k127_4615240_0 PFAM Outer membrane efflux protein - - - 1.269e-207 658.0
PJD3_k127_4615240_1 Multicopper oxidase K22348 - 1.16.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 567.0
PJD3_k127_4615240_2 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000000000000000000000000000000000000000004012 177.0
PJD3_k127_4615240_3 - - - - 0.000000000000000004367 87.0
PJD3_k127_4615617_0 aminopeptidase N K01256 - 3.4.11.2 2.369e-307 966.0
PJD3_k127_4615617_1 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000452 431.0
PJD3_k127_4615617_2 Domain of unknown function (DUF4136) - - - 0.000000000000001159 86.0
PJD3_k127_4631073_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008911 429.0
PJD3_k127_4631073_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001551 259.0
PJD3_k127_4631073_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000006715 226.0
PJD3_k127_4631073_3 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000008899 191.0
PJD3_k127_4631073_4 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000002377 104.0
PJD3_k127_4631073_5 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0000000011 59.0
PJD3_k127_4663090_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 518.0
PJD3_k127_4663090_1 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009602 494.0
PJD3_k127_4663090_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002694 447.0
PJD3_k127_4663090_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005145 378.0
PJD3_k127_4663090_4 Aldehyde ferredoxin oxidoreductase, N-terminal domain - - - 0.000000000000000004262 85.0
PJD3_k127_4670068_0 type II secretion system protein E K02283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 507.0
PJD3_k127_4670068_1 type II and III secretion system protein K02280 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 387.0
PJD3_k127_4680711_0 Belongs to the peptidase S1C family K04771 - 3.4.21.107 4.331e-206 653.0
PJD3_k127_4680711_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 407.0
PJD3_k127_4680711_2 PFAM response regulator receiver K02483,K07666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 355.0
PJD3_k127_4680711_3 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000000000000000000000006592 194.0
PJD3_k127_4680711_4 Histidine kinase K02484 - 2.7.13.3 0.000000000000000000000000000000000000000000004272 168.0
PJD3_k127_4683354_0 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 5.4e-323 997.0
PJD3_k127_4683354_1 Outer membrane efflux protein K18139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 487.0
PJD3_k127_4683354_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000001756 210.0
PJD3_k127_46894_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 1.939e-297 919.0
PJD3_k127_46894_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007421 553.0
PJD3_k127_46894_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 517.0
PJD3_k127_46894_3 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002892 331.0
PJD3_k127_46894_4 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000008307 258.0
PJD3_k127_46894_5 Amino acid transport and metabolism K01713,K14170 - 4.2.1.51,4.2.1.91,5.4.99.5 0.0000000000000000000000000000000000000000000000000000000000002543 215.0
PJD3_k127_46894_6 Prephenate dehydrogenase K00210,K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000015 182.0
PJD3_k127_46894_7 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000000000000001205 160.0
PJD3_k127_46894_8 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000000002328 72.0
PJD3_k127_4696244_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 8.838e-240 747.0
PJD3_k127_4696244_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000271 538.0
PJD3_k127_4696244_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000002629 177.0
PJD3_k127_4696244_3 PFAM regulatory protein, MerR - - - 0.0000000000000000000000000000000000000000000007399 169.0
PJD3_k127_4696244_4 dehydrogenase - - - 0.0000001892 52.0
PJD3_k127_4709236_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 530.0
PJD3_k127_4709236_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 376.0
PJD3_k127_4709236_2 Nitrate reductase delta subunit - - - 0.00000000000000000000000000000000000000002405 160.0
PJD3_k127_4709236_3 - - - - 0.0000000426 57.0
PJD3_k127_4736928_0 alpha-L-arabinofuranosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 486.0
PJD3_k127_4736928_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004707 460.0
PJD3_k127_4736928_10 Belongs to the glycosyltransferase 26 family K05946 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002376 317.0
PJD3_k127_4736928_11 Chain length determinant protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 324.0
PJD3_k127_4736928_12 Psort location OuterMembrane, score 9.92 K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002867 314.0
PJD3_k127_4736928_13 undecaprenyl-phosphate glucose phosphotransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007328 263.0
PJD3_k127_4736928_14 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001117 250.0
PJD3_k127_4736928_15 Haem-NO-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003268 243.0
PJD3_k127_4736928_16 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000008528 237.0
PJD3_k127_4736928_17 O-acyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000001539 212.0
PJD3_k127_4736928_18 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000000000004675 218.0
PJD3_k127_4736928_19 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain - - - 0.000000000000000000000000000000000000000000001243 190.0
PJD3_k127_4736928_2 O-antigen ligase like membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005167 455.0
PJD3_k127_4736928_20 Stage II sporulation protein E (SpoIIE) K07315 - 3.1.3.3 0.00000000000000000000000000000000000007998 161.0
PJD3_k127_4736928_21 Nucleotidyl transferase - - - 0.000000000000000000001984 109.0
PJD3_k127_4736928_22 cheY-homologous receiver domain - - - 0.000000000000000000002526 96.0
PJD3_k127_4736928_23 antisigma factor binding K04749,K06378 - - 0.0000000000009271 72.0
PJD3_k127_4736928_24 Histidine kinase - - - 0.00000001875 61.0
PJD3_k127_4736928_25 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.0000005113 57.0
PJD3_k127_4736928_3 Glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001976 437.0
PJD3_k127_4736928_4 PFAM Glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002264 433.0
PJD3_k127_4736928_5 transferase activity, transferring glycosyl groups K00754,K13684 GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0008610,GO:0008653,GO:0008921,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 390.0
PJD3_k127_4736928_6 Glycosyl Transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009232 377.0
PJD3_k127_4736928_7 polysaccharide biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007529 388.0
PJD3_k127_4736928_8 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 397.0
PJD3_k127_4736928_9 Glycosyl transferase family group 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003381 344.0
PJD3_k127_4756377_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005564 436.0
PJD3_k127_4756377_1 tRNA synthetases class I (E and Q), catalytic domain K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 362.0
PJD3_k127_4763653_0 Acetolactate synthase K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004335 399.0
PJD3_k127_4763653_1 Major Facilitator K08218 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001811 254.0
PJD3_k127_4764087_0 OHCU decarboxylase K02083,K06016 - 3.5.1.6,3.5.1.87,3.5.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001255 404.0
PJD3_k127_4764087_1 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008863 329.0
PJD3_k127_4764087_2 Belongs to the IlvD Edd family K01687,K22186 - 4.2.1.82,4.2.1.9 0.0000000000000000000000000000000000000000000000000000000000000001404 235.0
PJD3_k127_4764087_3 Thiamine pyrophosphate enzyme, central domain K04103 - 4.1.1.74 0.00000000000000000000000000000000000000000000000009412 180.0
PJD3_k127_4764087_4 Short C-terminal domain K08982 - - 0.0000000001425 65.0
PJD3_k127_4772273_0 Amino acid transport and metabolism K01583 - 4.1.1.19 0.0 1452.0
PJD3_k127_4772273_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1023.0
PJD3_k127_4772273_10 Protein of unknown function (DUF993) - - - 9.933e-196 623.0
PJD3_k127_4772273_11 Tripartite tricarboxylate transporter TctA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 614.0
PJD3_k127_4772273_12 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 596.0
PJD3_k127_4772273_13 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 576.0
PJD3_k127_4772273_14 TOBE domain K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000588 557.0
PJD3_k127_4772273_15 TRAP C4-dicarboxylate transport system permease DctM subunit K11690 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005032 554.0
PJD3_k127_4772273_16 Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates K01426,K01455,K18540 - 3.5.1.100,3.5.1.4,3.5.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007824 514.0
PJD3_k127_4772273_17 Mandelate Racemase Muconate Lactonizing - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 519.0
PJD3_k127_4772273_18 Dihydrodipicolinate synthetase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 508.0
PJD3_k127_4772273_19 Carbohydrate transport and metabolism K21395 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 505.0
PJD3_k127_4772273_2 Biotin carboxylase - - - 7.102e-283 874.0
PJD3_k127_4772273_20 Choloylglycine hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 494.0
PJD3_k127_4772273_21 Xylose isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 484.0
PJD3_k127_4772273_22 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 479.0
PJD3_k127_4772273_23 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K03338 - 2.7.1.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 452.0
PJD3_k127_4772273_24 dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 444.0
PJD3_k127_4772273_25 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 450.0
PJD3_k127_4772273_26 PFAM Transketolase central region K00162,K21417 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 430.0
PJD3_k127_4772273_27 ABC transporter K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007708 417.0
PJD3_k127_4772273_28 Cleaves 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP) to form dihydroxyacetone phosphate (DHAP) and 3-sulfolactaldehyde (SLA) K01635,K01671 GO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006790,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0019637,GO:0034308,GO:0042180,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044282,GO:0061595,GO:0061720,GO:0071704,GO:1901135,GO:1901136,GO:1901575,GO:1901615,GO:1902776,GO:1902777 4.1.2.40,4.1.2.57 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000185 417.0
PJD3_k127_4772273_29 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 409.0
PJD3_k127_4772273_3 Oxidoreductase domain protein - - - 1.654e-253 787.0
PJD3_k127_4772273_30 PFAM Extracellular solute-binding protein, family 3 K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001243 393.0
PJD3_k127_4772273_31 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 381.0
PJD3_k127_4772273_32 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004059 375.0
PJD3_k127_4772273_33 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 371.0
PJD3_k127_4772273_34 abc transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 369.0
PJD3_k127_4772273_35 ABC-type sugar transport system periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006928 372.0
PJD3_k127_4772273_36 amino acid ABC transporter K02029 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008892 346.0
PJD3_k127_4772273_37 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 322.0
PJD3_k127_4772273_38 Binding-protein-dependent transport system inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 316.0
PJD3_k127_4772273_39 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 293.0
PJD3_k127_4772273_4 Tripartite tricarboxylate transporter TctA family K07793 - - 5.657e-246 767.0
PJD3_k127_4772273_40 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 294.0
PJD3_k127_4772273_41 Carbohydrate ABC transporter membrane protein 2, CUT1 family K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 293.0
PJD3_k127_4772273_42 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003213 283.0
PJD3_k127_4772273_43 binding-protein-dependent transport systems inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003263 285.0
PJD3_k127_4772273_44 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000001371 235.0
PJD3_k127_4772273_45 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000218 229.0
PJD3_k127_4772273_46 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000000000000000000000000001881 180.0
PJD3_k127_4772273_47 Thiamine-binding protein - - - 0.00000000000000000000000000000000000000000001859 167.0
PJD3_k127_4772273_48 Tripartite tricarboxylate transporter TctB family K07794 - - 0.00000000000000000000000000000000000007517 146.0
PJD3_k127_4772273_49 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000005226 143.0
PJD3_k127_4772273_5 Oxidoreductase domain protein - - - 1.044e-224 700.0
PJD3_k127_4772273_50 Protoporphyrinogen oxidase K00230 GO:0000166,GO:0003674,GO:0003824,GO:0004729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0010181,GO:0016491,GO:0016627,GO:0016634,GO:0016635,GO:0018130,GO:0019438,GO:0032553,GO:0033013,GO:0033014,GO:0034641,GO:0036094,GO:0042168,GO:0042440,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055114,GO:0070818,GO:0070819,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.5.3 0.0000000000000000000000000000000001379 134.0
PJD3_k127_4772273_51 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000000000000001497 133.0
PJD3_k127_4772273_52 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000008967 96.0
PJD3_k127_4772273_53 - - - - 0.0000000000000000001117 92.0
PJD3_k127_4772273_54 PFAM Secreted repeat of - - - 0.00000004651 57.0
PJD3_k127_4772273_6 Aminotransferase class-III K00823 - 2.6.1.19 7.852e-209 657.0
PJD3_k127_4772273_7 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 1.21e-204 660.0
PJD3_k127_4772273_8 FAD dependent oxidoreductase - - - 6.764e-203 639.0
PJD3_k127_4772273_9 MacB-like periplasmic core domain K02004 - - 6.147e-196 625.0
PJD3_k127_4793088_0 Belongs to the malate synthase family K01638 - 2.3.3.9 1.681e-287 889.0
PJD3_k127_4793088_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 3.388e-196 624.0
PJD3_k127_4793088_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009644 374.0
PJD3_k127_4793088_3 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000054 344.0
PJD3_k127_4793088_4 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001358 283.0
PJD3_k127_4793088_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000005788 146.0
PJD3_k127_4805193_0 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003895 437.0
PJD3_k127_4805193_3 Protein of unknown function (DUF560) - - - 0.000000000000002503 85.0
PJD3_k127_4805193_4 - - - - 0.0000000002329 61.0
PJD3_k127_4811028_0 TIGRFAM polar amino acid ABC transporter, inner membrane subunit K09971 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 509.0
PJD3_k127_4811028_1 PFAM ABC transporter related K02028,K09972 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001991 442.0
PJD3_k127_4811028_2 acid transport system permease K09970 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 395.0
PJD3_k127_4811028_3 Belongs to the DEAD box helicase family - - - 0.00003019 51.0
PJD3_k127_4811357_0 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 606.0
PJD3_k127_4811357_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 347.0
PJD3_k127_4811357_2 dihydropteroate synthase K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 314.0
PJD3_k127_4811357_3 - - - - 0.000000000001257 71.0
PJD3_k127_4814598_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 3.411e-318 982.0
PJD3_k127_4814598_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 7.706e-275 876.0
PJD3_k127_4814598_10 reductase K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 344.0
PJD3_k127_4814598_11 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 312.0
PJD3_k127_4814598_12 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000001744 241.0
PJD3_k127_4814598_13 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000003119 229.0
PJD3_k127_4814598_14 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000000000000005687 215.0
PJD3_k127_4814598_15 HAD-superfamily hydrolase K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000002014 207.0
PJD3_k127_4814598_16 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000000000001043 136.0
PJD3_k127_4814598_17 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000001398 106.0
PJD3_k127_4814598_18 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000009706 101.0
PJD3_k127_4814598_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 4.658e-205 644.0
PJD3_k127_4814598_3 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 578.0
PJD3_k127_4814598_4 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002065 509.0
PJD3_k127_4814598_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007457 439.0
PJD3_k127_4814598_6 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 438.0
PJD3_k127_4814598_7 Malonyl CoA-acyl carrier protein transacylase K00645,K15355 GO:0003674,GO:0003824,GO:0004312,GO:0004314,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016417,GO:0016419,GO:0016420,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 355.0
PJD3_k127_4814598_8 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000237 359.0
PJD3_k127_4814598_9 Peptidase family S49 K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 359.0
PJD3_k127_4831561_0 extracellular solute-binding protein, family 5 K02035 - - 5.265e-298 921.0
PJD3_k127_4831561_1 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 607.0
PJD3_k127_4831561_10 LysR family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001662 369.0
PJD3_k127_4831561_11 Coenzyme A transferase K01032 - 2.8.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002961 355.0
PJD3_k127_4831561_12 BFD domain protein 2Fe-2S -binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 368.0
PJD3_k127_4831561_13 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01031 - 2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004205 351.0
PJD3_k127_4831561_14 COG0665 Glycine D-amino acid oxidases (deaminating) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044 338.0
PJD3_k127_4831561_15 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 296.0
PJD3_k127_4831561_16 Protein of unknown function (DUF3300) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002612 265.0
PJD3_k127_4831561_17 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000001568 228.0
PJD3_k127_4831561_18 PFAM isochorismatase hydrolase - - - 0.000000000000000000000000000000000000000000000000000006287 198.0
PJD3_k127_4831561_19 Pfam Response regulator receiver - - - 0.00000000000000000000000000000000000000000009892 164.0
PJD3_k127_4831561_2 PFAM aminotransferase class V - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 576.0
PJD3_k127_4831561_20 Hsp20/alpha crystallin family - - - 0.0000000000000000000000000000000000000002571 153.0
PJD3_k127_4831561_21 Nitrous oxide-stimulated promoter - - - 0.0000000000000000000000000000002529 128.0
PJD3_k127_4831561_23 formate dehydrogenase (NAD+) activity - - - 0.00000000000000000007599 94.0
PJD3_k127_4831561_24 SnoaL-like domain - - - 0.00000000000000003301 86.0
PJD3_k127_4831561_3 Belongs to the ABC transporter superfamily K02032,K12372 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 569.0
PJD3_k127_4831561_4 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004574 547.0
PJD3_k127_4831561_5 PFAM Mandelate racemase muconate lactonizing K01856,K02549 - 4.2.1.113,5.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 524.0
PJD3_k127_4831561_6 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 501.0
PJD3_k127_4831561_7 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 448.0
PJD3_k127_4831561_8 PFAM glycosyl transferase family 39 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004055 451.0
PJD3_k127_4831561_9 Major Facilitator K08218 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 388.0
PJD3_k127_4844482_0 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K15581,K19227 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0016020,GO:0022857,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 418.0
PJD3_k127_4844482_1 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000269 412.0
PJD3_k127_4844482_2 Peptide ABC transporter substrate-binding protein K15580 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007701 412.0
PJD3_k127_4844482_3 Oligopeptide/dipeptide transporter, C-terminal region K15583 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0016020,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002232 374.0
PJD3_k127_4844482_4 ABC transporter, ATP-binding protein K10823,K19230 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0016020,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000001147 90.0
PJD3_k127_4869046_0 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0 1024.0
PJD3_k127_4869046_1 Membrane-bound serine protease (ClpP class) K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 400.0
PJD3_k127_4869046_2 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002261 372.0
PJD3_k127_4869046_3 PFAM Patatin - - - 0.000000000000000000000000000000000000000000000002327 178.0
PJD3_k127_4884756_0 LytTr DNA-binding domain K08083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 409.0
PJD3_k127_4884756_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 378.0
PJD3_k127_4884756_2 Histidine kinase K08082 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000001057 245.0
PJD3_k127_4884756_3 PFAM HemY domain protein K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000005554 239.0
PJD3_k127_4884756_4 HemX, putative uroporphyrinogen-III C-methyltransferase K02496,K13543 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000001708 170.0
PJD3_k127_4884756_5 Uroporphyrinogen III synthase HEM4 K02496,K13543 - 2.1.1.107,4.2.1.75 0.00000000000000003397 91.0
PJD3_k127_4890267_0 Acyclic terpene utilisation family protein AtuA - - - 1.157e-263 817.0
PJD3_k127_4890267_1 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K13889 - - 5.51e-224 704.0
PJD3_k127_4890267_10 Domain of unknown function (DUF4387) - - - 0.0000000000000000000000000000000000000000000000001845 177.0
PJD3_k127_4890267_11 50S ribosomal protein L18 K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0008097,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0019843,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363 - 0.0004845 45.0
PJD3_k127_4890267_2 Sigma-54 interaction domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 501.0
PJD3_k127_4890267_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005483 475.0
PJD3_k127_4890267_4 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001653 460.0
PJD3_k127_4890267_5 Belongs to the ABC transporter superfamily K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 389.0
PJD3_k127_4890267_6 Belongs to the ABC transporter superfamily K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 344.0
PJD3_k127_4890267_7 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 293.0
PJD3_k127_4890267_8 Belongs to the pirin family K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008805 244.0
PJD3_k127_4890267_9 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000001011 216.0
PJD3_k127_4921104_0 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 379.0
PJD3_k127_4921104_1 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 349.0
PJD3_k127_4921104_2 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002574 305.0
PJD3_k127_4921104_3 - - - - 0.000000000000000000000000000000000000000000002979 173.0
PJD3_k127_4926730_0 TIGRFAM ribonuclease, Rne Rng family K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 616.0
PJD3_k127_4926730_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000001019 226.0
PJD3_k127_4926730_2 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000000000001184 202.0
PJD3_k127_4926730_3 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042802,GO:0042803,GO:0043021,GO:0043022,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0046983,GO:0070037,GO:0070038,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.177 0.000000000000000000000000000000000000000000000000006566 184.0
PJD3_k127_4926730_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000001755 136.0
PJD3_k127_4926730_5 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.00000000000001113 78.0
PJD3_k127_4936364_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 1.632e-224 704.0
PJD3_k127_4936364_1 PFAM aminotransferase class I and II K00832 - 2.6.1.57 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 576.0
PJD3_k127_4947535_0 PFAM NnrS family protein K07234 - - 0.0000000000000000000000000000000000000000000000000000000000000000001748 245.0
PJD3_k127_4947535_1 Universal stress protein family - - - 0.000000000000000000000000000000000000001081 152.0
PJD3_k127_4947535_2 Nuclease (SNase domain protein) - - - 0.00000000000000000000000000002271 123.0
PJD3_k127_4947535_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000002566 83.0
PJD3_k127_4947535_4 Universal stress protein - - - 0.0002321 53.0
PJD3_k127_5101471_0 Pyridine nucleotide-disulphide oxidoreductase - - - 2.28e-302 941.0
PJD3_k127_5101471_1 Pyruvate:ferredoxin oxidoreductase core domain II K18355 - 1.2.1.58 3.875e-224 701.0
PJD3_k127_5101471_10 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000002461 171.0
PJD3_k127_5101471_2 Amino acid amide ABC transporter substrate-binding protein, HAAT family K01999 - - 2.291e-201 642.0
PJD3_k127_5101471_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170,K18356 - 1.2.1.58,1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008123 591.0
PJD3_k127_5101471_4 Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides K00364 - 1.7.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002775 532.0
PJD3_k127_5101471_5 AMP-binding enzyme K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 533.0
PJD3_k127_5101471_6 branched-chain amino acid K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005109 443.0
PJD3_k127_5101471_7 TIGRFAM pyruvate ketoisovalerate oxidoreductase, gamma subunit K00172,K18357 - 1.2.1.58,1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000201 284.0
PJD3_k127_5101471_8 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002802 282.0
PJD3_k127_5101471_9 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000297 209.0
PJD3_k127_5157797_0 Peptidase family M3 K01414 - 3.4.24.70 1.992e-277 869.0
PJD3_k127_5157797_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs K05539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003245 419.0
PJD3_k127_5157797_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 401.0
PJD3_k127_5157797_3 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 380.0
PJD3_k127_5157797_4 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000003528 184.0
PJD3_k127_5157797_5 Domain of unknown function (DUF4124) - - - 0.0000000000000000000000000000001343 136.0
PJD3_k127_5157797_6 UPF0761 membrane protein K07058 - - 0.0000000000000000001049 97.0
PJD3_k127_5157797_7 Ornithine cyclodeaminase/mu-crystallin family K01750 - 4.3.1.12 0.00000000002238 65.0
PJD3_k127_5157797_8 - - - - 0.0000003065 55.0
PJD3_k127_5157797_9 - - - - 0.000791 51.0
PJD3_k127_5201063_0 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K01908 - 6.2.1.17 1.084e-318 986.0
PJD3_k127_5201063_1 Dehydrogenase K00382 - 1.8.1.4 9.489e-209 654.0
PJD3_k127_5201063_2 Major facilitator Superfamily K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008157 546.0
PJD3_k127_5201063_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000000000000000000000006646 183.0
PJD3_k127_5201063_4 DUF218 domain - - - 0.000000000000000000000000000000000000000002839 166.0
PJD3_k127_5201063_5 NlpC/P60 family K13695,K19303 - - 0.00000000000000000000000000000000000000008722 164.0
PJD3_k127_5202113_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1257.0
PJD3_k127_5202113_1 Type II secretion system (T2SS), protein E, N-terminal domain K02454,K02504,K02652,K12276 - - 4.102e-240 754.0
PJD3_k127_5202113_10 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005725 406.0
PJD3_k127_5202113_11 SMART AAA ATPase K06923 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 401.0
PJD3_k127_5202113_12 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 361.0
PJD3_k127_5202113_13 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009974 336.0
PJD3_k127_5202113_14 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 323.0
PJD3_k127_5202113_15 Peroxiredoxin K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000172 253.0
PJD3_k127_5202113_16 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000000000007069 232.0
PJD3_k127_5202113_17 Peptidase M23B K08259 - 3.4.24.75 0.00000000000000000000000000000000000000000000000000000000000000003652 235.0
PJD3_k127_5202113_18 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.00000000000000000000000000000000000000000000000000000000000000006022 238.0
PJD3_k127_5202113_19 Cell wall formation K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000006269 216.0
PJD3_k127_5202113_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 9.221e-216 674.0
PJD3_k127_5202113_20 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000000005231 140.0
PJD3_k127_5202113_21 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000001396 98.0
PJD3_k127_5202113_3 Type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004328 590.0
PJD3_k127_5202113_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 569.0
PJD3_k127_5202113_5 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 568.0
PJD3_k127_5202113_6 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 530.0
PJD3_k127_5202113_7 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 516.0
PJD3_k127_5202113_8 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002622 513.0
PJD3_k127_5202113_9 CBS domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 488.0
PJD3_k127_5258877_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 312.0
PJD3_k127_5258877_1 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000000000000000000000000000000000000000007531 183.0
PJD3_k127_5258877_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000000000000273 181.0
PJD3_k127_5258877_3 Belongs to the ABC transporter superfamily K10823 GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0008144,GO:0016020,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044464,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000001714 130.0
PJD3_k127_5258877_4 Biopolymer transport protein ExbD/TolR K03559 - - 0.0000000000000000000000000000003955 124.0
PJD3_k127_5260853_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00596 - 4.1.1.64 2.012e-226 707.0
PJD3_k127_5260853_1 helix_turn_helix gluconate operon transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 325.0
PJD3_k127_5260853_2 HNH nucleases - - - 0.000000000000000000000000000000000000000000000000000000000006764 208.0
PJD3_k127_5260853_3 Anion-transporting ATPase K01551 - 3.6.3.16 0.00000000000000000000000000000000002224 136.0
PJD3_k127_5271443_0 Dienelactone hydrolase family K01061 - 3.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 426.0
PJD3_k127_5271443_1 Aminoacyl-tRNA editing domain - - - 0.00000000000000000000000000000000000000000000000000000004426 209.0
PJD3_k127_5271443_2 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000001041 145.0
PJD3_k127_5273562_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 3.163e-222 696.0
PJD3_k127_5273562_1 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 586.0
PJD3_k127_5273562_10 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 304.0
PJD3_k127_5273562_11 NIF3 (NGG1p interacting factor 3) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007855 280.0
PJD3_k127_5273562_12 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000002184 214.0
PJD3_k127_5273562_13 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.0000000000000000000000000000000000000000000000009747 188.0
PJD3_k127_5273562_14 phosphoribosyl-ATP pyrophosphohydrolase K01523 - 3.6.1.31 0.00000000000000000000000000000000000000000004699 164.0
PJD3_k127_5273562_15 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 - - 0.0000000000000000000000000000000000000000001215 162.0
PJD3_k127_5273562_16 Posttranslational modification, protein turnover, chaperones K03599 - - 0.0000000000000000000000000000000002459 135.0
PJD3_k127_5273562_17 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000000277 106.0
PJD3_k127_5273562_18 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000003726 109.0
PJD3_k127_5273562_2 Belongs to the peptidase S1C family K04691,K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 433.0
PJD3_k127_5273562_3 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 411.0
PJD3_k127_5273562_4 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 429.0
PJD3_k127_5273562_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 401.0
PJD3_k127_5273562_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 336.0
PJD3_k127_5273562_7 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 325.0
PJD3_k127_5273562_8 Cytochrome C1 K00413 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 329.0
PJD3_k127_5273562_9 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002772 307.0
PJD3_k127_5274109_0 Ferrous iron transport protein B K04759 - - 1.815e-235 750.0
PJD3_k127_5274109_1 Bacterial transcriptional activator domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003373 604.0
PJD3_k127_5274109_2 Bacterial extracellular solute-binding protein K02055 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 569.0
PJD3_k127_5274109_3 binding-protein-dependent transport systems inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204 564.0
PJD3_k127_5274109_4 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 535.0
PJD3_k127_5274109_5 binding-protein-dependent transport systems inner membrane component K02053 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 424.0
PJD3_k127_5274109_6 AsmA family K07289 - - 0.0000000000000000000000001891 109.0
PJD3_k127_5274109_7 - - - - 0.000000000000000000000001549 110.0
PJD3_k127_5280916_0 Lytic transglycosylase K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000288 551.0
PJD3_k127_5280916_1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 432.0
PJD3_k127_5280916_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006905 386.0
PJD3_k127_5280916_3 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002134 377.0
PJD3_k127_5280916_4 aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 362.0
PJD3_k127_5280916_5 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007538 281.0
PJD3_k127_5280916_6 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002512 284.0
PJD3_k127_5280916_7 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004331 271.0
PJD3_k127_5280916_8 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000008807 239.0
PJD3_k127_5283378_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 2.228e-286 907.0
PJD3_k127_5283378_1 AMP-binding enzyme C-terminal domain K01895 - 6.2.1.1 1.739e-235 740.0
PJD3_k127_5283378_10 Major Facilitator K08219 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 334.0
PJD3_k127_5283378_11 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 321.0
PJD3_k127_5283378_12 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001039 265.0
PJD3_k127_5283378_13 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000003671 244.0
PJD3_k127_5283378_14 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000001765 239.0
PJD3_k127_5283378_15 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000000000000000000000000034 128.0
PJD3_k127_5283378_16 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K05589 - - 0.00000000000000000000000000002817 120.0
PJD3_k127_5283378_17 - - - - 0.00004131 49.0
PJD3_k127_5283378_2 TRAP C4-dicarboxylate transport system permease DctM subunit - - - 5.145e-222 703.0
PJD3_k127_5283378_3 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 1.253e-220 688.0
PJD3_k127_5283378_4 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002226 582.0
PJD3_k127_5283378_5 Acyl-homoserine-lactone synthase K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003587 440.0
PJD3_k127_5283378_6 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005578 397.0
PJD3_k127_5283378_7 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 399.0
PJD3_k127_5283378_8 DNA polymerase alpha chain like domain K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008887 370.0
PJD3_k127_5283378_9 (Lipo)protein K07287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 354.0
PJD3_k127_5300285_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 4.835e-200 630.0
PJD3_k127_5300285_1 - - - - 0.00000000000000000000000000000000000000000000000000003184 197.0
PJD3_k127_5300285_2 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000001466 173.0
PJD3_k127_5320719_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.109e-293 917.0
PJD3_k127_5320719_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0000226,GO:0001817,GO:0001819,GO:0001906,GO:0001907,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004365,GO:0004857,GO:0004866,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005811,GO:0005829,GO:0005856,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006417,GO:0006464,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009435,GO:0009605,GO:0009607,GO:0009620,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009987,GO:0010033,GO:0010466,GO:0010468,GO:0010506,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010951,GO:0012501,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016241,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016769,GO:0016903,GO:0017014,GO:0017144,GO:0017148,GO:0018119,GO:0018130,GO:0018193,GO:0018198,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019730,GO:0019752,GO:0019828,GO:0019904,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031341,GO:0031343,GO:0031640,GO:0031647,GO:0031965,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032787,GO:0032879,GO:0032880,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035605,GO:0035606,GO:0035821,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042866,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043436,GO:0043891,GO:0043900,GO:0043902,GO:0043903,GO:0044003,GO:0044004,GO:0044068,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044364,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044531,GO:0044532,GO:0044533,GO:0045087,GO:0045861,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050662,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050832,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051287,GO:0051336,GO:0051346,GO:0051402,GO:0051701,GO:0051702,GO:0051704,GO:0051707,GO:0051709,GO:0051712,GO:0051716,GO:0051817,GO:0051818,GO:0051851,GO:0051852,GO:0051873,GO:0051883,GO:0052040,GO:0052042,GO:0052248,GO:0052330,GO:0052433,GO:0052501,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061134,GO:0061135,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0061844,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0070997,GO:0071310,GO:0071345,GO:0071346,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080090,GO:0090087,GO:0090407,GO:0097159,GO:0097452,GO:0097718,GO:0098542,GO:0098772,GO:0140096,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112,GO:2000113 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 603.0
PJD3_k127_5320719_2 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 521.0
PJD3_k127_5320719_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 411.0
PJD3_k127_5320719_4 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010487,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0043918,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000003962 117.0
PJD3_k127_5330891_0 KaiC K08482 - - 1.67e-239 750.0
PJD3_k127_5330891_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004539 548.0
PJD3_k127_5330891_2 Crp Fnr family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 370.0
PJD3_k127_5330891_3 histidine kinase, dimerisation and phosphoacceptor region K05962 - 2.7.13.1 0.0000000000000000000000000000000000000000000000000000008662 194.0
PJD3_k127_5330891_7 - - - - 0.0000000000000000000000000008425 119.0
PJD3_k127_5330891_8 Protein of unknown function (DUF1328) - - - 0.000000000000001056 81.0
PJD3_k127_5336169_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 2.446e-242 764.0
PJD3_k127_5336169_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 428.0
PJD3_k127_5336169_2 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 417.0
PJD3_k127_5336169_3 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 367.0
PJD3_k127_5336169_4 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 324.0
PJD3_k127_5336169_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0032296,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363 3.1.26.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 314.0
PJD3_k127_5336169_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000001062 234.0
PJD3_k127_5336169_7 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000002759 226.0
PJD3_k127_5336169_8 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000002076 130.0
PJD3_k127_5336169_9 Domain of unknown function (DUF4845) - - - 0.000000000000001795 82.0
PJD3_k127_5354843_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain - - - 2.569e-233 732.0
PJD3_k127_5354843_1 AIR synthase related protein, N-terminal domain K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 444.0
PJD3_k127_5361939_0 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003424 562.0
PJD3_k127_5361939_1 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 314.0
PJD3_k127_5361939_2 Domain of unknown function (DUF4382) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 316.0
PJD3_k127_5361939_3 Allophanate hydrolase subunit 2 K06350 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002475 277.0
PJD3_k127_5361939_4 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004122 281.0
PJD3_k127_5361939_5 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000001757 229.0
PJD3_k127_5361939_6 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000002635 228.0
PJD3_k127_5361939_7 Allophanate hydrolase subunit 1 - - - 0.00000000000000000000000000000000000000000000000003503 194.0
PJD3_k127_5369148_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1074.0
PJD3_k127_5369148_1 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 3.589e-255 795.0
PJD3_k127_5369148_2 Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate K01782 - 1.1.1.35,4.2.1.17,5.1.2.3 1.194e-253 802.0
PJD3_k127_5369148_3 PFAM NUDIX hydrolase K07455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 545.0
PJD3_k127_5369148_4 abc transporter K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 510.0
PJD3_k127_5369148_5 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005392 357.0
PJD3_k127_5369148_6 Histidine kinase - - - 0.000000000000000000000000000000000000000001227 170.0
PJD3_k127_5369148_7 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000000005274 133.0
PJD3_k127_5369148_8 Mut7-C ubiquitin - - - 0.0000000000000000005959 87.0
PJD3_k127_5369148_9 - - - - 0.00008835 48.0
PJD3_k127_5376351_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 452.0
PJD3_k127_5376351_1 PFAM YaeQ family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 324.0
PJD3_k127_5376351_2 Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily K01919 - 6.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 297.0
PJD3_k127_5376351_3 dioxygenase K15777 - - 0.000000000000000000000000005278 112.0
PJD3_k127_5425062_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1417.0
PJD3_k127_5425062_1 Belongs to the ClpA ClpB family K03694 - - 0.0 1215.0
PJD3_k127_5425062_10 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 336.0
PJD3_k127_5425062_11 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005247 316.0
PJD3_k127_5425062_12 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003131 276.0
PJD3_k127_5425062_13 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000107 255.0
PJD3_k127_5425062_14 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000005634 252.0
PJD3_k127_5425062_15 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000000000000000000000000000004676 239.0
PJD3_k127_5425062_16 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000001475 241.0
PJD3_k127_5425062_17 Belongs to the UPF0758 family K03630 - - 0.00000000000000000000000000000000000000000000000000000000000000000387 234.0
PJD3_k127_5425062_18 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000008239 224.0
PJD3_k127_5425062_19 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000000000000008618 187.0
PJD3_k127_5425062_2 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 2.807e-290 903.0
PJD3_k127_5425062_20 Uncharacterized ACR, COG1430 K09005 - - 0.0000000000000000000000000000000000000000003514 166.0
PJD3_k127_5425062_21 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000004186 145.0
PJD3_k127_5425062_22 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000000000000000000001301 136.0
PJD3_k127_5425062_23 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000000000000000006036 134.0
PJD3_k127_5425062_24 Biopolymer transport protein ExbD TolR K03559 - - 0.000000000000000000000000000000000222 137.0
PJD3_k127_5425062_25 SMART Rhodanese domain protein - - - 0.0000000000000000000000000000000004264 138.0
PJD3_k127_5425062_26 Disulfide bond formation protein K03611 - - 0.00000000000000000000000008331 113.0
PJD3_k127_5425062_27 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000000006102 95.0
PJD3_k127_5425062_28 Belongs to the UPF0434 family K09791 - - 0.000000000000007712 75.0
PJD3_k127_5425062_3 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 1.051e-245 762.0
PJD3_k127_5425062_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 548.0
PJD3_k127_5425062_5 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 GO:0003674,GO:0003824,GO:0004801,GO:0016740,GO:0016744 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 419.0
PJD3_k127_5425062_6 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005542 383.0
PJD3_k127_5425062_7 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000691 370.0
PJD3_k127_5425062_8 Exonuclease VII, large subunit K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005971 367.0
PJD3_k127_5425062_9 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008311 354.0
PJD3_k127_5434965_0 Cellulose synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 586.0
PJD3_k127_5434965_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K02361 - 4.1.3.27,5.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008387 271.0
PJD3_k127_5438260_0 Alpha beta K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001498 254.0
PJD3_k127_5438260_1 VanZ like family - - - 0.0000000000000000000000000000000000000000000000000004589 198.0
PJD3_k127_5438260_2 Ferredoxin - - - 0.000000000000000000000000000000000000001792 149.0
PJD3_k127_5438260_3 Biotin protein ligase C terminal domain K03524 - 6.3.4.15 0.00000000000000000000000000000000008528 144.0
PJD3_k127_5438260_4 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.000000000000000000000000006782 114.0
PJD3_k127_5438260_5 Sporulation domain protein - - - 0.00000131 59.0
PJD3_k127_5465263_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1129.0
PJD3_k127_5465263_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.499e-232 729.0
PJD3_k127_5465263_2 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 526.0
PJD3_k127_5465263_3 Colicin V production protein K03558 - - 0.00000000000007311 80.0
PJD3_k127_5465263_4 PFAM Sporulation domain protein K03749 - - 0.000000000004832 71.0
PJD3_k127_5582569_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1736.0
PJD3_k127_5582569_1 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 1.325e-244 767.0
PJD3_k127_5582569_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 1.776e-205 652.0
PJD3_k127_5582569_3 PFAM Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 391.0
PJD3_k127_5582569_4 Copper binding periplasmic protein CusF - - - 0.00000000000000000005351 94.0
PJD3_k127_5587200_0 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 1.601e-258 807.0
PJD3_k127_5587200_1 CoA-transferase family III K07749 - 2.8.3.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 577.0
PJD3_k127_5587200_10 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000009279 166.0
PJD3_k127_5587200_11 PFAM Lytic transglycosylase catalytic - - - 0.000000000000000000000000000000000000000002172 165.0
PJD3_k127_5587200_12 Universal stress protein - - - 0.000000000000000000000000000695 119.0
PJD3_k127_5587200_13 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.0008007 44.0
PJD3_k127_5587200_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 552.0
PJD3_k127_5587200_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 504.0
PJD3_k127_5587200_4 PFAM aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 491.0
PJD3_k127_5587200_5 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 466.0
PJD3_k127_5587200_6 enoyl-CoA hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 373.0
PJD3_k127_5587200_7 D-alanyl-d-alanine carboxypeptidase K07259 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000886 358.0
PJD3_k127_5587200_8 TIGRFAM TRAP dicarboxylate transporter, DctP subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 311.0
PJD3_k127_5587200_9 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005923 284.0
PJD3_k127_5598432_0 COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase K01652 - 2.2.1.6 6.418e-228 719.0
PJD3_k127_5598432_1 SBF-like CPA transporter family (DUF4137) K03453 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006133 366.0
PJD3_k127_5598432_2 TIGRFAM Drug resistance transporter Bcr CflA subfamily K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 346.0
PJD3_k127_5598432_3 Polysaccharide biosynthesis protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 340.0
PJD3_k127_5598432_4 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 299.0
PJD3_k127_5598432_5 import inner membrane translocase, subunit Tim44 - - - 0.0000000000000000000000000000000000000000000000000000000009685 213.0
PJD3_k127_5598432_6 KR domain - - - 0.000000000000000000000000000000000000000000000000000001248 212.0
PJD3_k127_5598432_7 - - - - 0.00000007628 59.0
PJD3_k127_5611715_0 Hsp70 protein K04043 - - 6.111e-304 939.0
PJD3_k127_5611715_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122 - 1.17.1.9 7.536e-208 662.0
PJD3_k127_5611715_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009614 600.0
PJD3_k127_5611715_3 COG1960 Acyl-CoA dehydrogenases K09456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004671 550.0
PJD3_k127_5611715_4 Metallo-beta-lactamase superfamily domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 535.0
PJD3_k127_5611715_5 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.00000000000000000001245 97.0
PJD3_k127_5644424_0 Extracellular ligand-binding receptor K01999 - - 1.131e-208 653.0
PJD3_k127_5644424_1 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361 507.0
PJD3_k127_5644424_2 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000001737 207.0
PJD3_k127_56688_0 NADH-quinone oxidoreductase K00336 - 1.6.5.3 1.375e-295 926.0
PJD3_k127_56688_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 1.692e-253 785.0
PJD3_k127_56688_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 286.0
PJD3_k127_56688_11 Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002345 279.0
PJD3_k127_56688_12 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000236 258.0
PJD3_k127_56688_13 NADH dehydrogenase K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000001286 242.0
PJD3_k127_56688_14 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000004572 234.0
PJD3_k127_56688_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000003413 189.0
PJD3_k127_56688_16 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000000004119 157.0
PJD3_k127_56688_17 preprotein translocase K03075 - - 0.0000000000000000000000000008058 117.0
PJD3_k127_56688_18 acetolactate synthase K01652 - 2.2.1.6 0.0000000000000000004395 86.0
PJD3_k127_56688_2 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 6.35e-243 756.0
PJD3_k127_56688_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 5.676e-237 737.0
PJD3_k127_56688_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 580.0
PJD3_k127_56688_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007644 568.0
PJD3_k127_56688_6 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009322 332.0
PJD3_k127_56688_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008238 312.0
PJD3_k127_56688_8 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 311.0
PJD3_k127_56688_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001667 302.0
PJD3_k127_5790528_0 nitric oxide reductase K04561 - 1.7.2.5 0.0 1288.0
PJD3_k127_5790528_1 Transcriptional regulator K02584,K12266 - - 1.828e-242 758.0
PJD3_k127_5790528_10 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009071 333.0
PJD3_k127_5790528_11 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 315.0
PJD3_k127_5790528_12 ATPases associated with a variety of cellular activities K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008451 310.0
PJD3_k127_5790528_13 Branched-chain amino acid ATP-binding cassette transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005946 293.0
PJD3_k127_5790528_14 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001389 297.0
PJD3_k127_5790528_15 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.00000000000000000000000000000000000000000000000000000000000000000000009883 248.0
PJD3_k127_5790528_16 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000339 232.0
PJD3_k127_5790528_17 Shikimate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000001114 235.0
PJD3_k127_5790528_18 Flavodoxin - - - 0.000000000000000000000000000000000000000003037 160.0
PJD3_k127_5790528_19 Transcriptional regulator K03892 - - 0.00000000000000000000002074 103.0
PJD3_k127_5790528_2 benzoyl-CoA oxygenase K15512 - 1.14.13.208 1.938e-232 726.0
PJD3_k127_5790528_3 AMP-binding enzyme C-terminal domain K04110 - 6.2.1.25 1.424e-218 692.0
PJD3_k127_5790528_4 enoyl-coa hydratase carnithine racemase K15513 - 4.1.2.44 6.017e-217 687.0
PJD3_k127_5790528_5 PFAM Extracellular ligand-binding receptor K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005527 486.0
PJD3_k127_5790528_6 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 424.0
PJD3_k127_5790528_7 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 418.0
PJD3_k127_5790528_8 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006278 390.0
PJD3_k127_5790528_9 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 342.0
PJD3_k127_5796043_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.376e-243 759.0
PJD3_k127_5796043_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003629 295.0
PJD3_k127_5796043_2 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000004519 241.0
PJD3_k127_5796043_3 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000005 232.0
PJD3_k127_5796043_4 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000007826 213.0
PJD3_k127_5801694_0 NADP oxidoreductase coenzyme F420-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 434.0
PJD3_k127_5801694_1 Threonyl and Alanyl tRNA synthetase second additional domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004042 278.0
PJD3_k127_5801694_2 Tryptophan-rich sensory protein K05770 - - 0.000000000000000000000000000000000000000000000000000000000001558 214.0
PJD3_k127_5801694_3 Acetyltransferase (GNAT) domain K03829 - - 0.00000000000000000000000000000000000000000000000001037 185.0
PJD3_k127_5801694_4 Antibiotic biosynthesis monooxygenase - - - 0.0000000000000000000000000000000000000000000001676 169.0
PJD3_k127_5801694_5 - - - - 0.000000000000000000000000000000001238 136.0
PJD3_k127_5801694_6 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000001378 122.0
PJD3_k127_5801694_7 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.00000000000000000000000000185 119.0
PJD3_k127_5801694_8 Protein of unknown function, DUF488 - - - 0.0000000000000000000000008274 115.0
PJD3_k127_5801694_9 membrane transporter protein K07090 - - 0.00000000000008889 72.0
PJD3_k127_5927492_0 Putative serine dehydratase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004842 376.0
PJD3_k127_5927492_1 Ion transport 2 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002073 240.0
PJD3_k127_5927492_2 Protein of unknown function (DUF3303) - - - 0.000000000000000009307 87.0
PJD3_k127_5943646_0 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 421.0
PJD3_k127_5943646_1 Uncharacterised MFS-type transporter YbfB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005249 327.0
PJD3_k127_5943646_2 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 301.0
PJD3_k127_5943646_3 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000201 256.0
PJD3_k127_5943646_4 PFAM Succinylglutamate desuccinylase aspartoacylase - - - 0.00000000000000000000000000000000000000000000000000000002818 202.0
PJD3_k127_5948719_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 3.938e-264 818.0
PJD3_k127_5948719_1 Belongs to the GPAT DAPAT family K00631 GO:0003674,GO:0003824,GO:0004366,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0031224,GO:0031226,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 556.0
PJD3_k127_5948719_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004326 432.0
PJD3_k127_5948719_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 429.0
PJD3_k127_5948719_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000000000000001593 211.0
PJD3_k127_5948719_5 - - - - 0.0002746 48.0
PJD3_k127_5949004_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1305.0
PJD3_k127_5949004_1 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 509.0
PJD3_k127_5949004_2 dna polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000000000001334 146.0
PJD3_k127_5949004_3 Subtilase family - - - 0.000000000000000000000000224 110.0
PJD3_k127_5952658_0 glutamate synthase K00265,K00284 - 1.4.1.13,1.4.1.14,1.4.7.1 0.0 2423.0
PJD3_k127_5952658_1 provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate K00266 - 1.4.1.13,1.4.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 587.0
PJD3_k127_5952658_2 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000009793 175.0
PJD3_k127_5953050_0 Phosphate acetyl butaryl transferase K00029 - 1.1.1.40 1.008e-250 782.0
PJD3_k127_5953050_1 effector of murein hydrolase LrgA K06518 - - 0.000000000000000000000000000000000000000000000005965 175.0
PJD3_k127_5953050_2 of murein hydrolase - - - 0.00000000004211 70.0
PJD3_k127_5955294_0 Tripartite ATP-independent periplasmic transporter, DctM component - - - 8.083e-277 867.0
PJD3_k127_5955294_1 abc transporter, permease K02004 - - 2.424e-235 756.0
PJD3_k127_5955294_10 Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions K02553 - - 0.00000000000000000000000000000000000000000000000000000000000002664 218.0
PJD3_k127_5955294_11 nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000004509 200.0
PJD3_k127_5955294_12 Belongs to the TPP enzyme family K01576 - 4.1.1.7 0.000000000000000000000000000000000000000000000000000001119 199.0
PJD3_k127_5955294_13 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000133 205.0
PJD3_k127_5955294_14 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000000000002137 189.0
PJD3_k127_5955294_15 - - - - 0.000000000000000000000000000000000000000000000000001837 191.0
PJD3_k127_5955294_16 Isocitrate lyase K01637 - 4.1.3.1 0.00000000001265 64.0
PJD3_k127_5955294_2 NMT1-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215 557.0
PJD3_k127_5955294_3 DNA recombination protein, rmuC K09760 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004757 512.0
PJD3_k127_5955294_4 aldo keto reductase K19265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000544 482.0
PJD3_k127_5955294_5 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 475.0
PJD3_k127_5955294_6 Enoyl-CoA hydratase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 342.0
PJD3_k127_5955294_7 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005323 304.0
PJD3_k127_5955294_8 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000002995 268.0
PJD3_k127_5955294_9 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005646 268.0
PJD3_k127_5975536_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 8.52e-288 900.0
PJD3_k127_5975536_1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006542 286.0
PJD3_k127_5975536_2 Staphylococcal nuclease homologues - - - 0.000000000003094 68.0
PJD3_k127_5981745_0 Acyl-CoA dehydrogenase N terminal K00249 - 1.3.8.7 1.928e-245 772.0
PJD3_k127_5981745_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K07119 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 489.0
PJD3_k127_5981745_2 hydrolase activity, acting on ester bonds K01563,K11991 - 3.5.4.33,3.8.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003261 408.0
PJD3_k127_5981745_3 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 357.0
PJD3_k127_5981745_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000001659 201.0
PJD3_k127_5981745_5 PFAM thioesterase superfamily protein - - - 0.000000000000000000000000000000000002312 142.0
PJD3_k127_5993279_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 528.0
PJD3_k127_5993279_1 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002327 324.0
PJD3_k127_5993279_2 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000002706 217.0
PJD3_k127_5993279_3 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000000005472 188.0
PJD3_k127_5993279_4 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000001464 171.0
PJD3_k127_5993279_5 riboflavin synthase alpha K00793 - 2.5.1.9 0.0000000000000000000000000000009296 123.0
PJD3_k127_6000976_0 Bacterial NAD-glutamate dehydrogenase K15371 - 1.4.1.2 0.0 1383.0
PJD3_k127_6002599_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 GO:0000287,GO:0003674,GO:0003824,GO:0004738,GO:0005488,GO:0005515,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0019842,GO:0030976,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0055114,GO:0097159,GO:1901363,GO:1901681 1.2.4.1 0.0 1075.0
PJD3_k127_6002599_1 Sodium:solute symporter family - - - 1.388e-223 702.0
PJD3_k127_6002599_2 Glutathione S-transferase, C-terminal domain K11209 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 341.0
PJD3_k127_6002599_3 TIGRFAM Drug resistance transporter Bcr CflA subfamily K07552 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 327.0
PJD3_k127_6002599_4 Protein of unknown function (DUF541) - - - 0.000000000000000000000009364 119.0
PJD3_k127_6002925_0 carbohydrate binding - - - 0.0 3269.0
PJD3_k127_6002925_1 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 1.763e-231 730.0
PJD3_k127_6002925_10 membrane protein, hemolysin III homolog K11068 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 287.0
PJD3_k127_6002925_11 Molybdenum ABC transporter periplasmic molybdate-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002314 265.0
PJD3_k127_6002925_12 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000002331 228.0
PJD3_k127_6002925_13 Flavodoxin domain K00230 - 1.3.5.3 0.00000000000000000000000000000000000000002265 155.0
PJD3_k127_6002925_14 membrane K15977 - - 0.0000000000000000000000000000000938 128.0
PJD3_k127_6002925_15 Protein of unknown function (DUF2892) - - - 0.0000000000000002306 82.0
PJD3_k127_6002925_2 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzymes K00382 - 1.8.1.4 1.737e-209 660.0
PJD3_k127_6002925_3 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K00166 - 1.2.4.4 6.611e-209 656.0
PJD3_k127_6002925_4 Transketolase, C-terminal domain K00167 - 1.2.4.4 1.29e-200 627.0
PJD3_k127_6002925_5 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component and related enzymes K09699 - 2.3.1.168 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 514.0
PJD3_k127_6002925_6 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 460.0
PJD3_k127_6002925_7 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 372.0
PJD3_k127_6002925_8 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004319 326.0
PJD3_k127_6002925_9 COG4149 ABC-type molybdate transport system, permease component K02018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 291.0
PJD3_k127_6019539_0 basic membrane K02058 - - 3.078e-194 612.0
PJD3_k127_6019539_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 377.0
PJD3_k127_6019539_2 Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the phosphoenolpyruvate synthase (PEPS) by catalyzing its phosphorylation dephosphorylation K09773 - 2.7.11.33,2.7.4.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007715 367.0
PJD3_k127_6019539_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000009848 61.0
PJD3_k127_6028654_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 8.147e-212 664.0
PJD3_k127_6028654_1 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 486.0
PJD3_k127_6028654_2 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 463.0
PJD3_k127_6028654_3 PFAM ABC transporter related K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 406.0
PJD3_k127_6028654_4 PFAM binding-protein-dependent transport systems inner membrane component K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002387 342.0
PJD3_k127_6028654_5 Polar amino acid ABC transporter, inner membrane K02029 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002916 335.0
PJD3_k127_6028654_6 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00346 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000004334 270.0
PJD3_k127_6028654_7 SMART SH3 domain protein - - - 0.00000000000000000000000000000000000000000007535 164.0
PJD3_k127_6028654_8 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000001464 113.0
PJD3_k127_6029328_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006436 487.0
PJD3_k127_6029328_1 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008059 338.0
PJD3_k127_6029328_2 Anthranilate synthase K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 285.0
PJD3_k127_6029328_3 Phospholipase K01058 - 3.1.1.32,3.1.1.4 0.00000000000000000000000000000000000000000000000000000000000000000001012 247.0
PJD3_k127_6029328_4 protease with the C-terminal PDZ domain - - - 0.0000000000000007332 81.0
PJD3_k127_6029328_5 Cytochrome c7 and related cytochrome c - - - 0.00000000000002307 75.0
PJD3_k127_6037171_0 Peptidase M61 - - - 4.866e-195 621.0
PJD3_k127_6037171_1 Zinc-binding dehydrogenase K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 437.0
PJD3_k127_6037171_2 Molybdopterin-guanine dinucleotide biosynthesis protein MobA K07141 - 2.7.7.76 0.0000000000000000000000000000000009096 139.0
PJD3_k127_6037171_3 Protein of unknown function (DUF560) - - - 0.0000000000000000000005144 106.0
PJD3_k127_6038583_0 COG1653 ABC-type sugar transport system, periplasmic component K17321 - - 0.0 1000.0
PJD3_k127_6038583_1 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004466 577.0
PJD3_k127_6038583_2 Belongs to the ABC transporter superfamily K17325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 473.0
PJD3_k127_6038583_3 Binding-protein-dependent transport system inner membrane component K17323 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 467.0
PJD3_k127_6038583_4 COG1175 ABC-type sugar transport systems permease components K17322 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003383 471.0
PJD3_k127_6038583_5 ABC-2 type transporter K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003125 430.0
PJD3_k127_6038583_6 Belongs to the ABC transporter superfamily K17324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 412.0
PJD3_k127_6038583_7 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007973 337.0
PJD3_k127_6038583_8 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000001228 220.0
PJD3_k127_6038583_9 small integral membrane protein - - - 0.000000000000000000000000000000003167 130.0
PJD3_k127_6045478_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1433.0
PJD3_k127_6045478_1 Belongs to the binding-protein-dependent transport system permease family K01997,K01998 - - 2.65e-267 836.0
PJD3_k127_6045478_10 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003502 318.0
PJD3_k127_6045478_11 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 294.0
PJD3_k127_6045478_12 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002791 265.0
PJD3_k127_6045478_13 Bacterial protein of unknown function (DUF924) - - - 0.0000000000000000000000000000000000000000000000000000000000000001785 227.0
PJD3_k127_6045478_14 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.0000000000000000000000000000000000000000000000000000000117 199.0
PJD3_k127_6045478_15 Domain of unknown function (DUF1841) - - - 0.00000000000000000000000000000000000000000000000000005283 190.0
PJD3_k127_6045478_16 Acyl CoA binding protein - - - 0.00000000000000000000000000000002683 129.0
PJD3_k127_6045478_17 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000003378 135.0
PJD3_k127_6045478_18 Copper resistance protein D - - - 0.000000000000000000000000004955 115.0
PJD3_k127_6045478_19 polyhydroxyalkanoic acid - - - 0.0000000000000001945 82.0
PJD3_k127_6045478_2 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 GO:0000183,GO:0001302,GO:0003674,GO:0003824,GO:0004516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016874,GO:0016879,GO:0018130,GO:0019219,GO:0019222,GO:0019357,GO:0019358,GO:0019362,GO:0019363,GO:0019365,GO:0019438,GO:0019637,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032502,GO:0034641,GO:0034654,GO:0040029,GO:0043094,GO:0043173,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046497,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0051276,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0080090,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 6.3.4.21 2.019e-202 636.0
PJD3_k127_6045478_3 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006246 588.0
PJD3_k127_6045478_4 PHB de-polymerase C-terminus K05973 - 3.1.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002669 562.0
PJD3_k127_6045478_5 Putative Na+/H+ antiporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002913 548.0
PJD3_k127_6045478_6 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001461 381.0
PJD3_k127_6045478_7 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA K03582 GO:0000166,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008854,GO:0009314,GO:0009338,GO:0009628,GO:0009987,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0030554,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044355,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0099046,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 390.0
PJD3_k127_6045478_8 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity K03583 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 395.0
PJD3_k127_6045478_9 abc transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 327.0
PJD3_k127_6060138_0 iron ion homeostasis - - - 1.61e-207 661.0
PJD3_k127_6060138_1 response regulator, receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 360.0
PJD3_k127_6060138_2 CHASE3 domain K05962 - 2.7.13.1 0.00000000000000000000000000000000000000001895 161.0
PJD3_k127_6060138_3 Protein of unknown function (DUF3096) - - - 0.0000000000006623 70.0
PJD3_k127_6067543_0 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain, Biotin carboxylase C-terminal domain, Carbamoyl-phosphate synthase L chain, N-terminal domain K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 5.537e-225 701.0
PJD3_k127_6067543_1 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002077 290.0
PJD3_k127_6067543_2 Protein of unknown function (DUF3426) - - - 0.0000000000000009667 78.0
PJD3_k127_6093199_0 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 297.0
PJD3_k127_6093199_1 Protein of unknown function (DUF2817) - - - 0.000000000000000000000000000000000000000000000000000000183 209.0
PJD3_k127_6097533_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 2.402e-232 737.0
PJD3_k127_6097533_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 417.0
PJD3_k127_6097533_10 Protein of unknown function (DUF2846) - - - 0.0000000000000000000000000000000000000000000000000000027 208.0
PJD3_k127_6097533_11 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000001814 190.0
PJD3_k127_6097533_12 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000003127 183.0
PJD3_k127_6097533_13 Protein of unknown function (DUF1326) - - - 0.000000000000000001391 95.0
PJD3_k127_6097533_2 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004821 408.0
PJD3_k127_6097533_3 carboxylic ester hydrolase activity K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005524 407.0
PJD3_k127_6097533_4 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 325.0
PJD3_k127_6097533_5 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001301 283.0
PJD3_k127_6097533_6 YjgF/chorismate_mutase-like, putative endoribonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007443 261.0
PJD3_k127_6097533_7 tRNA m6t6A37 methyltransferase activity K11261 - 1.2.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000003786 242.0
PJD3_k127_6097533_8 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000002588 202.0
PJD3_k127_6097533_9 of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000000000012 199.0
PJD3_k127_6105245_0 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 493.0
PJD3_k127_6105245_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005191 499.0
PJD3_k127_6105245_2 abc transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004897 379.0
PJD3_k127_6105245_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001512 237.0
PJD3_k127_6105245_4 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K01995 - - 0.0000000000000000000000000000000000001483 143.0
PJD3_k127_6112356_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 325.0
PJD3_k127_6112356_1 4Fe-4S dicluster domain K00184 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004089 302.0
PJD3_k127_6112356_2 NnrU protein - - - 0.000000000000000000000000000000000000000000000000000000000004869 214.0
PJD3_k127_6112356_3 NnrU protein - - - 0.000000000000000000000000000000000000000000000000000000004085 205.0
PJD3_k127_6112356_4 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000008986 168.0
PJD3_k127_6112356_5 COG2070 Dioxygenases related to 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000001451 153.0
PJD3_k127_6112356_6 - - - - 0.000000000000000000000000001834 116.0
PJD3_k127_6138071_0 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 521.0
PJD3_k127_6138071_1 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 493.0
PJD3_k127_6138071_10 Deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 293.0
PJD3_k127_6138071_11 HAD-superfamily hydrolase, subfamily IB (PSPase-like) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000228 270.0
PJD3_k127_6138071_12 methionine sulfoxide reductase K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000003736 263.0
PJD3_k127_6138071_13 AIR synthase related protein domain protein K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000138 258.0
PJD3_k127_6138071_14 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001796 254.0
PJD3_k127_6138071_15 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000003454 239.0
PJD3_k127_6138071_16 AAA domain, putative AbiEii toxin, Type IV TA system K06857 - 3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000001182 241.0
PJD3_k127_6138071_17 Protein of unknown function (DUF1109) - - - 0.00000000000000000000000000000000000000000000000000000000000000000003289 241.0
PJD3_k127_6138071_18 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.0000000000000000000000000000000000000000000000000000000000000000001467 237.0
PJD3_k127_6138071_19 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000000613 223.0
PJD3_k127_6138071_2 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 468.0
PJD3_k127_6138071_20 DSBA oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000001392 206.0
PJD3_k127_6138071_21 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000006586 185.0
PJD3_k127_6138071_22 Belongs to the DnaA family K10763 - - 0.00000000000000000000000000000000000000000000001403 179.0
PJD3_k127_6138071_23 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000002452 166.0
PJD3_k127_6138071_24 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000003895 85.0
PJD3_k127_6138071_25 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000004149 59.0
PJD3_k127_6138071_3 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006221 464.0
PJD3_k127_6138071_4 Phosphate transport system permease K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 430.0
PJD3_k127_6138071_5 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 426.0
PJD3_k127_6138071_6 PBP superfamily domain K05772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 349.0
PJD3_k127_6138071_7 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326 343.0
PJD3_k127_6138071_8 Histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 327.0
PJD3_k127_6138071_9 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 307.0
PJD3_k127_6166665_0 TrkA-N domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 520.0
PJD3_k127_6166665_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 422.0
PJD3_k127_6166665_2 Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP) K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003896 276.0
PJD3_k127_6166665_3 - - - - 0.00000000000000000000000000000000000000000002868 164.0
PJD3_k127_6166665_4 - - - - 0.0003204 50.0
PJD3_k127_6182139_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K22015 - 1.17.1.9,1.17.99.7 1.095e-307 954.0
PJD3_k127_6182139_1 Tfp pilus assembly protein tip-associated adhesin PilY1 K02674 - - 1.229e-208 683.0
PJD3_k127_6182139_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 450.0
PJD3_k127_6182139_3 TYPE 4 fimbrial BIOGENESIS K02672 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008359 258.0
PJD3_k127_6182139_4 type IV pilus modification protein PilV K02671 - - 0.000000000000000000000000014 115.0
PJD3_k127_6182139_5 Pilus assembly protein PilX - - - 0.000000000000001196 87.0
PJD3_k127_6221208_0 3-oxoacyl- acyl-carrier-protein K16872 - 2.3.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005818 499.0
PJD3_k127_6221208_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000067 473.0
PJD3_k127_6221208_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008972 376.0
PJD3_k127_6221208_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002812 327.0
PJD3_k127_6221208_4 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000287 275.0
PJD3_k127_6221208_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000004489 242.0
PJD3_k127_6221208_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000002464 239.0
PJD3_k127_6221208_7 DUF167 K09131 - - 0.000000000000000000000000000000002639 133.0
PJD3_k127_6221208_8 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.00000000115 71.0
PJD3_k127_6255939_0 PFAM aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 2.671e-266 833.0
PJD3_k127_6255939_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 565.0
PJD3_k127_6255939_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006806 362.0
PJD3_k127_6255939_3 4Fe-4S dicluster domain K05796 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 294.0
PJD3_k127_6263737_0 PFAM Alcohol dehydrogenase zinc-binding domain protein K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 460.0
PJD3_k127_6263737_1 Beta-lactamase K01069 - 3.1.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003976 336.0
PJD3_k127_6263737_2 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002836 333.0
PJD3_k127_6263737_3 PFAM UBA THIF-type NAD FAD binding protein K22132 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002094 256.0
PJD3_k127_6263737_4 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000006166 211.0
PJD3_k127_6263737_5 Ribosomal RNA adenine dimethylase - - - 0.00000000000000000000000000000000000000000000000001733 187.0
PJD3_k127_6285389_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1291.0
PJD3_k127_6285389_1 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 3.763e-230 725.0
PJD3_k127_6285389_10 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 415.0
PJD3_k127_6285389_11 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008989 436.0
PJD3_k127_6285389_12 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 390.0
PJD3_k127_6285389_13 CoA-substrate-specific enzyme activase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 342.0
PJD3_k127_6285389_14 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005383 343.0
PJD3_k127_6285389_15 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004939 325.0
PJD3_k127_6285389_16 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 331.0
PJD3_k127_6285389_17 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001404 235.0
PJD3_k127_6285389_18 Belongs to the MraZ family K03925 - - 0.000000000000000000000000000000000000000000000000000000000002017 212.0
PJD3_k127_6285389_19 Thioesterase superfamily K10806 - - 0.00000000000000000000000000000000000000000000000000000000007088 208.0
PJD3_k127_6285389_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003584 604.0
PJD3_k127_6285389_20 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.000000000001158 76.0
PJD3_k127_6285389_21 - - - - 0.0000008305 58.0
PJD3_k127_6285389_3 Tartrate dehydrogenase K07246 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.83,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 585.0
PJD3_k127_6285389_4 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 503.0
PJD3_k127_6285389_5 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006623 501.0
PJD3_k127_6285389_6 Domain of unknown function (DUF4147) K11529 - 2.7.1.165 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 489.0
PJD3_k127_6285389_7 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 491.0
PJD3_k127_6285389_8 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007024 453.0
PJD3_k127_6285389_9 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005585 431.0
PJD3_k127_6305072_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1219.0
PJD3_k127_6305072_1 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006181 507.0
PJD3_k127_6305072_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005 482.0
PJD3_k127_6305072_3 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.000000000000000000000000000000000000000000000583 168.0
PJD3_k127_6305072_4 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000001391 80.0
PJD3_k127_6310930_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000001508 254.0
PJD3_k127_6310930_1 LppC putative lipoprotein K07121 - - 0.0000000000000000000000000000000000000000000001518 182.0
PJD3_k127_6310930_2 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000308 116.0
PJD3_k127_6310930_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000007374 64.0
PJD3_k127_6343063_0 TIGRFAM methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 8.574e-265 822.0
PJD3_k127_6343063_1 cytosine purines uracil thiamine allantoin K03457 - - 5.276e-252 783.0
PJD3_k127_6343063_10 helix_turn_helix gluconate operon transcriptional repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007716 506.0
PJD3_k127_6343063_11 Domain of unknown function (DUF3482) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 481.0
PJD3_k127_6343063_12 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 448.0
PJD3_k127_6343063_13 Protein of unknown function (DUF2868) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008781 312.0
PJD3_k127_6343063_14 Lysine exporter protein (Lyse ygga) K11250 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003188 269.0
PJD3_k127_6343063_15 YcdC-like protein, C-terminal region K09017 - - 0.0000000000000000000000000000000000000000000000000000000001916 209.0
PJD3_k127_6343063_16 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.0000000000000000000000551 102.0
PJD3_k127_6343063_2 PFAM amidohydrolase K01464 - 3.5.2.2 7.694e-251 783.0
PJD3_k127_6343063_3 4Fe-4S ferredoxin iron-sulfur binding domain protein K17723,K17828 - 1.3.1.1,1.3.1.14 1.669e-235 734.0
PJD3_k127_6343063_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00822 - 2.6.1.18 1.619e-234 734.0
PJD3_k127_6343063_5 Peptidase family M28 K02083 - 3.5.3.9 4.58e-213 668.0
PJD3_k127_6343063_6 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17722 - 1.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 596.0
PJD3_k127_6343063_7 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004182 578.0
PJD3_k127_6343063_8 DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 576.0
PJD3_k127_6343063_9 amidohydrolase K01431 - 3.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 524.0
PJD3_k127_6350280_0 beta-eliminating lyase K01667 - 4.1.99.1 1.143e-234 734.0
PJD3_k127_6350280_1 cystathionine beta-lyase K01760 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009804 449.0
PJD3_k127_6350280_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007882 368.0
PJD3_k127_6350280_3 glycosyl transferase K02851 - 2.7.8.33,2.7.8.35 0.0000000000000000000000000000000000000000000000000000003923 211.0
PJD3_k127_6350280_4 Carbon-nitrogen hydrolase - - - 0.000000000000006773 74.0
PJD3_k127_63582_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 2.336e-224 707.0
PJD3_k127_63582_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 360.0
PJD3_k127_63582_2 Phosphoglycolate phosphatase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000003955 231.0
PJD3_k127_63582_3 PFAM ApaG domain protein K06195 - - 0.000000000000000000000000000000000000000000000008557 175.0
PJD3_k127_63582_4 PFAM MltA domain protein K08304 - - 0.0001036 52.0
PJD3_k127_6400640_0 protein involved in exopolysaccharide biosynthesis K16554 - - 4.331e-253 799.0
PJD3_k127_6400640_1 heat shock protein binding K05801 - - 0.000000000000002604 89.0
PJD3_k127_662221_0 Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB K04044 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 7.181e-249 782.0
PJD3_k127_662221_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.038e-234 739.0
PJD3_k127_662221_10 Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA K04082 - - 0.000000000000000000000000000000000000000000003323 169.0
PJD3_k127_662221_11 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000000000000000000000004435 125.0
PJD3_k127_662221_12 FeS assembly protein IscX - - - 0.0000000000000000000000133 102.0
PJD3_k127_662221_2 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 1.626e-213 670.0
PJD3_k127_662221_3 single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 597.0
PJD3_k127_662221_4 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 554.0
PJD3_k127_662221_5 Low molecular weight phosphotyrosine protein phosphatase K01104 GO:0000271,GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005975,GO:0005976,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009242,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033692,GO:0034637,GO:0034645,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0046377,GO:0071704,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901576 3.1.3.48 0.000000000000000000000000000000000000000000000000000000000000000000001929 239.0
PJD3_k127_662221_6 Iron-sulfur cluster assembly transcription factor K13643 - - 0.00000000000000000000000000000000000000000000000000000000000000000001532 237.0
PJD3_k127_662221_7 A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000124 229.0
PJD3_k127_662221_8 TIGRFAM iron-sulfur cluster assembly protein IscA K13628 - - 0.00000000000000000000000000000000000000000000000014 179.0
PJD3_k127_662221_9 Ferredoxin K04755 - - 0.000000000000000000000000000000000000000000001824 168.0
PJD3_k127_66658_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 1.14e-205 647.0
PJD3_k127_66658_1 Sigma-54 interaction domain K02667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 537.0
PJD3_k127_66658_10 - K06950 - - 0.0000000004143 63.0
PJD3_k127_66658_2 PFAM PfkB domain protein K00852,K00856 - 2.7.1.15,2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 391.0
PJD3_k127_66658_3 ATPase histidine kinase DNA gyrase B HSP90 domain protein K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009629 329.0
PJD3_k127_66658_4 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007023 305.0
PJD3_k127_66658_5 PFAM N-acetylmuramoyl-L-alanine amidase family 2 K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000000008945 232.0
PJD3_k127_66658_6 Cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000000000000000000000004765 218.0
PJD3_k127_66658_7 YGGT family K02221 - - 0.0000000000000000000000000000000002203 138.0
PJD3_k127_66658_8 - K11275 - - 0.000000000000000000008682 101.0
PJD3_k127_66658_9 zinc-ribbon domain - - - 0.000000000008049 69.0
PJD3_k127_674489_0 AcrB/AcrD/AcrF family K03296 - - 2.741e-306 961.0
PJD3_k127_674489_1 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 1.47e-231 723.0
PJD3_k127_674489_2 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006433 309.0
PJD3_k127_674489_3 Bacterial transcriptional repressor C-terminal K09017 - - 0.000000000000000000000000000000000000000000000000000000000000001629 228.0
PJD3_k127_675393_0 PFAM pyruvate ferredoxin flavodoxin oxidoreductase - - - 0.0 1369.0
PJD3_k127_675393_1 due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm K01869 - 6.1.1.4 0.0 1282.0
PJD3_k127_675393_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006469 436.0
PJD3_k127_675393_11 Belongs to the methyltransferase superfamily K07444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 403.0
PJD3_k127_675393_12 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 380.0
PJD3_k127_675393_13 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002482 285.0
PJD3_k127_675393_14 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005429 279.0
PJD3_k127_675393_15 DNA polymerase III delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000175 273.0
PJD3_k127_675393_16 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001557 262.0
PJD3_k127_675393_17 DSBA-like thioredoxin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002718 244.0
PJD3_k127_675393_18 Thioesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009011 238.0
PJD3_k127_675393_19 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000000000004807 120.0
PJD3_k127_675393_2 DNA helicase K03657 - 3.6.4.12 6.168e-295 923.0
PJD3_k127_675393_20 Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane K19804 - - 0.0000000000000000000000000002296 118.0
PJD3_k127_675393_21 Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane K03643 - - 0.000000000000000000000000004351 119.0
PJD3_k127_675393_22 Protein of unknown function (DUF655) K02237 - - 0.00000000000003105 79.0
PJD3_k127_675393_3 formate-tetrahydrofolate ligase activity K01938 - 6.3.4.3 5.785e-285 883.0
PJD3_k127_675393_4 CoA binding domain - - - 3.266e-261 819.0
PJD3_k127_675393_5 twitching motility protein K02669,K12203 - - 2.219e-195 612.0
PJD3_k127_675393_6 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002497 587.0
PJD3_k127_675393_7 twitching motility protein K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 574.0
PJD3_k127_675393_8 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 579.0
PJD3_k127_675393_9 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 567.0
PJD3_k127_684594_0 nitrite transporter K02575 - - 1.462e-245 763.0
PJD3_k127_684594_1 PFAM Major facilitator superfamily K02575 - - 1.678e-212 667.0
PJD3_k127_684594_2 Histidine kinase K07673 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 614.0
PJD3_k127_684594_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K17050 - 1.7.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005167 345.0
PJD3_k127_684594_4 helix_turn_helix, Lux Regulon K07684 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003064 266.0
PJD3_k127_684594_5 Protein of unknown function (DUF3567) - - - 0.0000000000000000000004893 99.0
PJD3_k127_686638_0 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 1.184e-242 757.0
PJD3_k127_686638_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001742 562.0
PJD3_k127_686638_2 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 294.0
PJD3_k127_686638_3 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000000000000000000000003716 256.0
PJD3_k127_689759_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 3.823e-215 683.0
PJD3_k127_689759_1 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 426.0
PJD3_k127_689759_2 Periplasmic binding protein domain K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 405.0
PJD3_k127_689759_3 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 379.0
PJD3_k127_689759_4 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 297.0
PJD3_k127_689759_5 leucine import across plasma membrane K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 294.0
PJD3_k127_689759_6 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.000000000000000000000000000000000000000000000002629 177.0
PJD3_k127_700091_0 type IV pilus secretin PilQ K02666 - - 5.689e-290 912.0
PJD3_k127_700091_1 Penicillin-binding protein OB-like domain K05366 - 2.4.1.129,3.4.16.4 3.028e-278 876.0
PJD3_k127_700091_10 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009287 385.0
PJD3_k127_700091_11 AAA domain, putative AbiEii toxin, Type IV TA system K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007614 374.0
PJD3_k127_700091_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 341.0
PJD3_k127_700091_13 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 326.0
PJD3_k127_700091_14 Forms part of the polypeptide exit tunnel K02926 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 319.0
PJD3_k127_700091_15 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006847 316.0
PJD3_k127_700091_16 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003445 287.0
PJD3_k127_700091_17 ABC-2 type transporter K09694 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 286.0
PJD3_k127_700091_18 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001214 287.0
PJD3_k127_700091_19 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003206 248.0
PJD3_k127_700091_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 3.766e-221 692.0
PJD3_k127_700091_20 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004548 244.0
PJD3_k127_700091_21 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001169 248.0
PJD3_k127_700091_22 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000000000000000000002269 235.0
PJD3_k127_700091_23 Pilus assembly protein, PilO K02664 - - 0.00000000000000000000000000000000000000000000000000000000000000000004156 239.0
PJD3_k127_700091_24 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000003761 227.0
PJD3_k127_700091_25 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000000000000000003528 213.0
PJD3_k127_700091_26 binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000000000005178 213.0
PJD3_k127_700091_27 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000000000000000006764 208.0
PJD3_k127_700091_28 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000000000000000000005903 210.0
PJD3_k127_700091_29 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000000000000000000000000006069 206.0
PJD3_k127_700091_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 515.0
PJD3_k127_700091_30 Fimbrial assembly protein (PilN) K02663 - - 0.000000000000000000000000000000000000000000000000000000583 210.0
PJD3_k127_700091_31 Involved in the binding of tRNA to the ribosomes K02946 - - 0.00000000000000000000000000000000000000000000000000007396 188.0
PJD3_k127_700091_32 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000007822 201.0
PJD3_k127_700091_33 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000000000006271 182.0
PJD3_k127_700091_34 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000000000636 173.0
PJD3_k127_700091_35 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000000000000001587 171.0
PJD3_k127_700091_36 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000000000000000000000003727 178.0
PJD3_k127_700091_37 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.0000000000000000000000000000000000000000000004454 168.0
PJD3_k127_700091_38 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000000000000000000000000000133 157.0
PJD3_k127_700091_39 pilus assembly protein PilP K02665 - - 0.000000000000000000000000000000000000000002804 164.0
PJD3_k127_700091_4 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000314 516.0
PJD3_k127_700091_40 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000003381 150.0
PJD3_k127_700091_41 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000007292 145.0
PJD3_k127_700091_42 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000003375 139.0
PJD3_k127_700091_43 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000000000002019 122.0
PJD3_k127_700091_44 Belongs to the frataxin family K06202 - - 0.00000000000000000000000006366 110.0
PJD3_k127_700091_45 protein involved in tolerance to divalent cations K03926 - - 0.000000000000000000000001729 118.0
PJD3_k127_700091_46 Ribosomal protein L30p/L7e K02907 - - 0.000000000000000000000306 102.0
PJD3_k127_700091_47 Ribosomal L29 protein K02904 - - 0.000000000000000005032 87.0
PJD3_k127_700091_48 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000007479 79.0
PJD3_k127_700091_49 Belongs to the bacterial ribosomal protein bL36 family K02919 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000001949 72.0
PJD3_k127_700091_5 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006043 507.0
PJD3_k127_700091_6 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 447.0
PJD3_k127_700091_7 Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 444.0
PJD3_k127_700091_8 assembly protein K02662 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005611 445.0
PJD3_k127_700091_9 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 427.0
PJD3_k127_710209_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00370,K17050 - 1.7.5.1 0.0 1945.0
PJD3_k127_710209_1 Methionine synthase K00548 - 2.1.1.13 0.0 1793.0
PJD3_k127_710209_10 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000564 188.0
PJD3_k127_710209_11 SCP-2 sterol transfer family - - - 0.00000000000000000000000000000000002158 142.0
PJD3_k127_710209_2 Respiratory nitrate reductase beta C-terminal K00371,K17051 - 1.7.5.1 2.757e-311 958.0
PJD3_k127_710209_3 Peptidase U32 K08303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 526.0
PJD3_k127_710209_4 Belongs to the LDH2 MDH2 oxidoreductase family K13574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002158 425.0
PJD3_k127_710209_5 PFAM peptidase U32 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007573 380.0
PJD3_k127_710209_6 fumarylacetoacetate (FAA) hydrolase K16165 - 3.7.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 334.0
PJD3_k127_710209_7 Nitrate reductase gamma subunit K00374 - 1.7.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004975 340.0
PJD3_k127_710209_8 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001582 251.0
PJD3_k127_710209_9 TIGRFAM nitrate reductase molybdenum cofactor assembly chaperone K00373 - - 0.0000000000000000000000000000000000000000000000000000000000000000001117 237.0
PJD3_k127_717723_0 transporter K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 586.0
PJD3_k127_717723_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 511.0
PJD3_k127_717723_2 Specifically methylates the adenine in position 2030 of 23S rRNA K07115 - 2.1.1.266 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 347.0
PJD3_k127_717723_3 Uncharacterized protein family UPF0016 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 319.0
PJD3_k127_717723_4 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000005786 161.0
PJD3_k127_750545_0 PFAM AMP-dependent synthetase and ligase K02182 - 6.2.1.48 3.024e-210 665.0
PJD3_k127_750545_1 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 351.0
PJD3_k127_750545_2 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.00000000002664 64.0
PJD3_k127_767402_0 Domain of unknown function (DUF3391) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 464.0
PJD3_k127_767402_1 GGDEF domain containing protein K13243 - 3.1.4.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 370.0
PJD3_k127_767402_2 lytic transglycosylase K08309 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002669 267.0
PJD3_k127_767402_3 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000001119 134.0
PJD3_k127_777770_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 3.271e-296 922.0
PJD3_k127_777770_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 7.455e-246 766.0
PJD3_k127_777770_10 cobalamin synthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004008 367.0
PJD3_k127_777770_11 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003455 353.0
PJD3_k127_777770_12 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 338.0
PJD3_k127_777770_13 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002217 328.0
PJD3_k127_777770_14 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 321.0
PJD3_k127_777770_15 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 313.0
PJD3_k127_777770_16 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 291.0
PJD3_k127_777770_17 Lipid A Biosynthesis K02517,K12974 - 2.3.1.241,2.3.1.242 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005436 299.0
PJD3_k127_777770_18 PFAM regulatory protein TetR K05501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001473 245.0
PJD3_k127_777770_19 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000000000000000000000000000000000000000006955 238.0
PJD3_k127_777770_2 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 1.404e-222 694.0
PJD3_k127_777770_20 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000008737 226.0
PJD3_k127_777770_21 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.00000000000000000000000000000000000000000000000000000000000005004 218.0
PJD3_k127_777770_22 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000003139 215.0
PJD3_k127_777770_23 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.000000000000000000000000000000000000000000000000000000000003172 212.0
PJD3_k127_777770_24 response to antibiotic - - - 0.00000000000000000000000000000000000000000000000000000000002126 224.0
PJD3_k127_777770_25 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.0000000000000000000000000000000000000000000000000000000005567 206.0
PJD3_k127_777770_26 Hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000003957 207.0
PJD3_k127_777770_27 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.00000000000000000000000000000000000000000000000000002117 196.0
PJD3_k127_777770_28 Cytokinin riboside 5'-monophosphate phosphoribohydrolase K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000004224 197.0
PJD3_k127_777770_29 Competence protein - - - 0.000000000000000000000000000000000000005222 159.0
PJD3_k127_777770_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 1.867e-204 643.0
PJD3_k127_777770_30 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000004321 144.0
PJD3_k127_777770_31 phosphoglycerate mutase K02226 - 3.1.3.73 0.00000000000000000000000000002041 125.0
PJD3_k127_777770_32 Glutaredoxin K03676 - - 0.00000000000000000000000000002746 121.0
PJD3_k127_777770_33 Bacterial SH3 domain - - - 0.000000000000000000000000002268 119.0
PJD3_k127_777770_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 2.062e-195 619.0
PJD3_k127_777770_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 599.0
PJD3_k127_777770_6 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 527.0
PJD3_k127_777770_7 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 447.0
PJD3_k127_777770_8 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 384.0
PJD3_k127_777770_9 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008009 379.0
PJD3_k127_787277_0 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II, Phosphoglucomutase phosphomannomutase, alpha beta alpha domain III, Phosphoglucomutase phosphomannomutase, C-terminal domain, Phosphoglucomutase phosphomannomutase, alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 2.416e-204 646.0
PJD3_k127_787277_1 Amidohydrolase family K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006419 447.0
PJD3_k127_787277_2 3-Deoxy-D-manno-octulosonic-acid transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000559 425.0
PJD3_k127_787277_3 TIGRFAM type I secretion outer membrane protein, TolC family K12340 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001596 425.0
PJD3_k127_787277_4 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 376.0
PJD3_k127_787277_5 Methyltransferase type 11 K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000009467 234.0
PJD3_k127_787277_6 AcrB/AcrD/AcrF family K03296 - - 0.0000000000000000000001426 98.0
PJD3_k127_788168_0 Transporter, hydrophobe amphiphile efflux-1 (HAE1) family K18138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 466.0
PJD3_k127_788168_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 437.0
PJD3_k127_788168_2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000816 97.0
PJD3_k127_807630_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007602 613.0
PJD3_k127_807630_1 acyl-CoA dehydrogenase K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 556.0
PJD3_k127_807630_2 7TM diverse intracellular signalling - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008206 466.0
PJD3_k127_813966_0 ammonium transporter K03320 - - 1.216e-216 684.0
PJD3_k127_813966_1 Bacterial protein of unknown function (Gcw_chp) - - - 0.00000000000000000000000000000000000000000000000000000000000000005382 231.0
PJD3_k127_813966_2 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000000000000000000000000007534 211.0
PJD3_k127_813966_3 magnesium chelatase K07391 - - 0.0000000000000000000000000000000000000000000000000000004539 198.0
PJD3_k127_813966_4 Membrane fusogenic activity K09806 - - 0.000000000000001986 78.0
PJD3_k127_813966_5 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000006382 71.0
PJD3_k127_842911_0 TIGRFAM O-acetylhomoserine O-acetylserine sulfhydrylase K01740 - 2.5.1.49 1.049e-239 745.0
PJD3_k127_842911_1 PFAM AMP-dependent synthetase and ligase K00666 - - 1.022e-197 620.0
PJD3_k127_842911_2 coa-binding K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003888 239.0
PJD3_k127_855079_0 Cytochrome C biogenesis protein transmembrane region K04084,K08344 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005237 383.0
PJD3_k127_855079_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 334.0
PJD3_k127_855079_2 COG4206 Outer membrane cobalamin receptor protein K02014,K16092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 321.0
PJD3_k127_855079_3 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.00000000000000000000000000000000000000000000000002414 194.0
PJD3_k127_935178_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 5.346e-210 664.0
PJD3_k127_935178_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 3.96e-203 642.0
PJD3_k127_935178_10 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000000000000003575 135.0
PJD3_k127_935178_11 Protein of unknown function (DUF2905) - - - 0.00000000000000002978 91.0
PJD3_k127_935178_2 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006449 522.0
PJD3_k127_935178_3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 506.0
PJD3_k127_935178_4 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003674 391.0
PJD3_k127_935178_5 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 364.0
PJD3_k127_935178_6 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003248 316.0
PJD3_k127_935178_7 lytic transglycosylase K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 294.0
PJD3_k127_935178_8 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007237 276.0
PJD3_k127_935178_9 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000002344 261.0
PJD3_k127_939945_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 7.412e-202 633.0
PJD3_k127_939945_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 573.0
PJD3_k127_939945_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002478 511.0
PJD3_k127_939945_3 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 286.0
PJD3_k127_939945_4 Protein of unknown function (DUF2889) - - - 0.00000000000000000000000000000000000000000000000000000001735 203.0
PJD3_k127_939945_5 Belongs to the CinA family K03743 - 3.5.1.42 0.0000000000000000000000000000000000000000000004718 171.0
PJD3_k127_939945_6 CHASE2 K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000056 175.0
PJD3_k127_939945_7 Modulates RecA activity K03565 - - 0.00000000000000000000000000000000000001167 149.0
PJD3_k127_94919_0 dna topoisomerase III K03169 - 5.99.1.2 0.0 1171.0
PJD3_k127_94919_1 Histidine kinase - - - 4.371e-207 673.0
PJD3_k127_94919_10 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000295 283.0
PJD3_k127_94919_11 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000002238 247.0
PJD3_k127_94919_12 Belongs to the alpha-IPM synthase homocitrate synthase family K01640 - 4.1.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000001555 246.0
PJD3_k127_94919_13 signal peptide protein - - - 0.000000000000000000000000000000000000000000000002627 181.0
PJD3_k127_94919_14 Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides K07232 - - 0.000000000000000000000000000000000000003163 157.0
PJD3_k127_94919_2 COG0569 K transport systems, NAD-binding component K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004469 576.0
PJD3_k127_94919_3 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 524.0
PJD3_k127_94919_4 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 431.0
PJD3_k127_94919_5 Transcriptional regulator, LysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 370.0
PJD3_k127_94919_6 Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000087 363.0
PJD3_k127_94919_7 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 365.0
PJD3_k127_94919_8 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 352.0
PJD3_k127_94919_9 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008646 330.0
PJD3_k127_961231_0 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 504.0
PJD3_k127_961231_1 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 477.0
PJD3_k127_961231_2 PFAM peptidase U61, LD-carboxypeptidase A K01297 - 3.4.17.13 0.0001032 45.0
PJD3_k127_973432_0 Ammonia monooxygenase K07120 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 289.0
PJD3_k127_973432_1 Asparaginase, N-terminal K01424 - 3.5.1.1 0.000000000000000000000000000000000000000000000000000000000006819 211.0
PJD3_k127_973432_2 PFAM Patatin - - - 0.000000000000000000000000000000000000000000000001559 179.0