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Overview

ID MAG02936
Name PJD3_bin.29
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Actinomycetota
Class Thermoleophilia
Order RBG-16-64-13
Family RBG-16-64-13
Genus JAHJSA01
Species
Assembly information
Completeness (%) 98.28
Contamination (%) 1.78
GC content (%) 67.0
N50 (bp) 17,472
Genome size (bp) 2,685,815

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2412

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_1001461_0 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006302 581.0
PJD3_k127_1001461_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000001196 223.0
PJD3_k127_1001461_2 Transcriptional regulatory protein, C terminal K02483 GO:0000156,GO:0000160,GO:0003674,GO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016020,GO:0023051,GO:0023052,GO:0023057,GO:0035556,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0070297,GO:0070298,GO:0071944,GO:1902531,GO:1902532 - 0.00000000000000000000000000000000000000000000000000000000004505 211.0
PJD3_k127_1001461_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000002147 207.0
PJD3_k127_1001461_4 PFAM DUF218 domain K03748 - - 0.0000000000000000000000000000000000000000000000004365 188.0
PJD3_k127_1001461_5 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000001156 115.0
PJD3_k127_1002440_0 Belongs to the glutamate synthase family K00265 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006216 475.0
PJD3_k127_1002440_1 PFAM Glutamine amidotransferase, class-II - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 471.0
PJD3_k127_1002440_2 Cysteine-rich domain K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007841 332.0
PJD3_k127_1020046_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 451.0
PJD3_k127_1020046_1 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000000000001379 149.0
PJD3_k127_1020046_2 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.000000000000000000000001242 116.0
PJD3_k127_1023111_0 PFAM Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002948 446.0
PJD3_k127_1023111_1 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000001229 220.0
PJD3_k127_1023111_2 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000006281 177.0
PJD3_k127_1023111_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000004716 183.0
PJD3_k127_1023111_4 Domain of unknown function (DUF296) - - - 0.000000000000000003016 86.0
PJD3_k127_1023111_5 heat shock protein binding - - - 0.000003342 60.0
PJD3_k127_1031504_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666,K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 449.0
PJD3_k127_1031504_1 D-gluconate metabolic process K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 400.0
PJD3_k127_1031504_2 Benzoyl-CoA reductase 2-hydroxyglutaryl-CoA dehydratase subunit, BcrC BadD HgdB K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003957 361.0
PJD3_k127_1031504_3 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003462 291.0
PJD3_k127_1031504_4 OsmC-like protein K06889,K07397 - - 0.0000000000000000000000000000000005189 136.0
PJD3_k127_1031504_5 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.000000000000000000000000000003885 136.0
PJD3_k127_1044189_0 PFAM ABC transporter related K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008495 567.0
PJD3_k127_1044189_1 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 436.0
PJD3_k127_1044189_10 Aminotransferase class-V K18608 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008483,GO:0016740,GO:0016769,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.30 0.000000000000000000000002609 106.0
PJD3_k127_1044189_11 4Fe-4S dicluster domain K00124 - - 0.00000000000000000000002391 106.0
PJD3_k127_1044189_12 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.00000000000005432 78.0
PJD3_k127_1044189_13 PFAM ThiamineS - - - 0.0008665 48.0
PJD3_k127_1044189_2 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 417.0
PJD3_k127_1044189_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 368.0
PJD3_k127_1044189_4 Alcohol dehydrogenase GroES-associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 362.0
PJD3_k127_1044189_5 Belongs to the binding-protein-dependent transport system permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000528 355.0
PJD3_k127_1044189_6 ABC transporter substrate-binding protein PnrA-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003764 344.0
PJD3_k127_1044189_7 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006024 316.0
PJD3_k127_1044189_8 alcohol dehydrogenase K13954 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000004214 225.0
PJD3_k127_1044189_9 Transcriptional regulator K03482,K03710,K11922 GO:0003674,GO:0003700,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000001154 138.0
PJD3_k127_1092955_0 acetyltransferase - - - 0.000000000000000000000000000000000000000002035 168.0
PJD3_k127_1092955_1 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000004 147.0
PJD3_k127_1092955_2 Uncharacterized protein family UPF0016 - - - 0.00000000000000000000000000001863 134.0
PJD3_k127_1092955_3 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.00000000000001951 83.0
PJD3_k127_1099084_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.792e-282 895.0
PJD3_k127_1099084_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 604.0
PJD3_k127_1099084_10 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000001883 190.0
PJD3_k127_1099084_11 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 - - 0.0000000000000000000000000000000000000000000319 166.0
PJD3_k127_1099084_12 Maf-like protein K06287 GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0030428,GO:0032506,GO:0044085,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.0000000000000000000000000000000000000001825 160.0
PJD3_k127_1099084_13 Sigma-70 region 2 K03088 GO:0001101,GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042221,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000006379 151.0
PJD3_k127_1099084_14 Double zinc ribbon - - - 0.0000000000000000000000000000000000002123 146.0
PJD3_k127_1099084_15 - - - - 0.00000000000000000000000004322 121.0
PJD3_k127_1099084_16 PD-(D/E)XK nuclease superfamily - - - 0.000000000000002486 88.0
PJD3_k127_1099084_17 Lrp/AsnC ligand binding domain - - - 0.0000000000004171 72.0
PJD3_k127_1099084_18 rod shape-determining protein MreC K03570 - - 0.0000000000009551 72.0
PJD3_k127_1099084_19 Phage integrase, N-terminal SAM-like domain - - - 0.000001686 51.0
PJD3_k127_1099084_2 Cell shape determining protein MreB Mrl K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005329 584.0
PJD3_k127_1099084_20 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071944 - 0.0002709 52.0
PJD3_k127_1099084_3 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004149 591.0
PJD3_k127_1099084_4 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772 - 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105 366.0
PJD3_k127_1099084_5 Male sterility protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007836 359.0
PJD3_k127_1099084_6 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 323.0
PJD3_k127_1099084_7 Mur ligase family, glutamate ligase domain K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 318.0
PJD3_k127_1099084_8 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 315.0
PJD3_k127_1099084_9 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 311.0
PJD3_k127_1129013_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 1.258e-248 785.0
PJD3_k127_1129013_1 glutaminyl-tRNA synthetase K01886 - 6.1.1.18 3.803e-238 750.0
PJD3_k127_1129013_10 electron transfer activity K05337 - - 0.0000000000000000007672 87.0
PJD3_k127_1129013_2 COG0076 Glutamate decarboxylase and related PLP-dependent K01634 - 4.1.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 545.0
PJD3_k127_1129013_3 MFS/sugar transport protein K03292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000895 417.0
PJD3_k127_1129013_4 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000192 294.0
PJD3_k127_1129013_5 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000003716 257.0
PJD3_k127_1129013_6 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000001166 244.0
PJD3_k127_1129013_7 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000001324 224.0
PJD3_k127_1129013_8 TilS substrate C-terminal domain K04075,K15780 - 2.4.2.8,6.3.4.19 0.0000000000000000000000000000000000000004037 167.0
PJD3_k127_1129013_9 PFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000002478 142.0
PJD3_k127_116071_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 7.984e-258 811.0
PJD3_k127_116071_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008073 432.0
PJD3_k127_116071_10 PFAM Branched-chain amino acid transport system permease component K01997,K01998 - - 0.0000000000000000000000000000000000000000000000000000000005591 219.0
PJD3_k127_116071_11 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000000000000000000000000002321 216.0
PJD3_k127_116071_12 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K11963 - - 0.000000000000000000000000000000000000000000000000000000003388 208.0
PJD3_k127_116071_13 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000003901 200.0
PJD3_k127_116071_14 succinyl-diaminopimelate desuccinylase K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000001088 211.0
PJD3_k127_116071_15 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000000000000000899 174.0
PJD3_k127_116071_16 Cysteine-rich domain K00113 - 1.1.5.3 0.0000000000000000000000000000000000000001247 162.0
PJD3_k127_116071_17 4Fe-4S dicluster domain K03390 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000006448 154.0
PJD3_k127_116071_18 Cupin 2, conserved barrel domain protein K00450,K01628 - 1.13.11.4,4.1.2.17 0.000000000000000000108 94.0
PJD3_k127_116071_19 Mo-molybdopterin cofactor metabolic process - - - 0.000002183 55.0
PJD3_k127_116071_2 PFAM oxidoreductase FAD NAD(P)-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 381.0
PJD3_k127_116071_3 aminopeptidase activity K19689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001782 302.0
PJD3_k127_116071_4 Amino acid amide ABC transporter substrate-binding protein, HAAT family K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 306.0
PJD3_k127_116071_5 Sterol carrier protein domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000172 292.0
PJD3_k127_116071_6 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002176 284.0
PJD3_k127_116071_7 Branched-chain amino acid transport system / permease component K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003037 277.0
PJD3_k127_116071_8 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000002656 271.0
PJD3_k127_116071_9 Coenzyme F420 hydrogenase dehydrogenase, beta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000002908 250.0
PJD3_k127_116304_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 8.636e-243 769.0
PJD3_k127_116304_1 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 9.509e-228 715.0
PJD3_k127_116304_2 Putative citrate transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 469.0
PJD3_k127_116304_3 Metalloenzyme superfamily K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003488 413.0
PJD3_k127_116304_4 decarboxylase beta subunit K01572 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000007177 191.0
PJD3_k127_116304_5 Helix-turn-helix diphteria tox regulatory element K03709 - - 0.000000000000000000000000000000000000000003534 165.0
PJD3_k127_116304_6 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase - - - 0.0000000000000000000000000003286 126.0
PJD3_k127_116304_7 Biotin-requiring enzyme - - - 0.00000000000000000000000005457 113.0
PJD3_k127_116304_8 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.000000000000000000005085 96.0
PJD3_k127_116304_9 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000000001358 83.0
PJD3_k127_1179210_0 Aminotransferase class-III K00833,K03851,K12256,K15372 - 2.6.1.113,2.6.1.55,2.6.1.62,2.6.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 518.0
PJD3_k127_1179210_1 Belongs to the aspartokinase family K00928 GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006553,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0019877,GO:0030312,GO:0040007,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 482.0
PJD3_k127_1179210_10 Diguanylate cyclase - - - 0.0000000000000000000000000006451 129.0
PJD3_k127_1179210_11 PFAM pyridoxamine 5'-phosphate K07006 - - 0.00000000000000000154 91.0
PJD3_k127_1179210_12 cell redox homeostasis - - - 0.0000000000000001102 83.0
PJD3_k127_1179210_2 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001593 409.0
PJD3_k127_1179210_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 417.0
PJD3_k127_1179210_4 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003798 387.0
PJD3_k127_1179210_5 Predicted metal-binding protein (DUF2284) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005256 340.0
PJD3_k127_1179210_6 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 312.0
PJD3_k127_1179210_7 PFAM pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00169 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 296.0
PJD3_k127_1179210_8 Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000000000000000000000000000003221 151.0
PJD3_k127_1179210_9 nitrogen fixation - - - 0.000000000000000000000000000000000002733 150.0
PJD3_k127_1201244_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009328 498.0
PJD3_k127_1201244_1 PFAM Pyruvate carboxyltransferase K02594 - 2.3.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006235 475.0
PJD3_k127_1201244_2 PFAM Pyruvate carboxyltransferase K02594 - 2.3.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 452.0
PJD3_k127_1201244_3 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K11072 - 3.6.3.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 381.0
PJD3_k127_1201244_4 Bacterial extracellular solute-binding protein K11069 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 314.0
PJD3_k127_1201244_5 ATPases associated with a variety of cellular activities K02074 - - 0.000000000000000000000000000000000000000000000000000000000003087 220.0
PJD3_k127_1201244_6 Belongs to the bacterial solute-binding protein 9 family K09815,K09818 - - 0.00000000000000000000000000000000000000000001872 179.0
PJD3_k127_1201244_7 ABC-type Mn2 Zn2 transport system, permease component K09816,K09819,K19976 - - 0.000000000000000000000000000000000003163 144.0
PJD3_k127_1201244_8 Belongs to the Fur family K03711 GO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0032993,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000007289 79.0
PJD3_k127_1201244_9 Acetyltransferase (GNAT) domain - - - 0.00001309 53.0
PJD3_k127_1222369_0 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 491.0
PJD3_k127_1222369_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 406.0
PJD3_k127_1222369_2 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000004301 170.0
PJD3_k127_1222369_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000007971 111.0
PJD3_k127_1222369_4 Nucleic-acid-binding protein implicated in transcription termination K02600,K07742 - - 0.000000297 59.0
PJD3_k127_1233504_0 Penicillin-binding Protein K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 470.0
PJD3_k127_1303882_0 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 435.0
PJD3_k127_1303882_1 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.00000000000000000000000000000002619 137.0
PJD3_k127_1318800_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 6.456e-318 1006.0
PJD3_k127_1318800_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 5.952e-270 846.0
PJD3_k127_1318800_10 Pyrroline-5-carboxylate reductase dimerisation K00286 - 1.5.1.2 0.00000000000000000000000000000000000000000000000006691 188.0
PJD3_k127_1318800_11 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000005572 179.0
PJD3_k127_1318800_12 glucose 6-phosphate dehydrogenase - - - 0.00000000000000000000000000000000004674 156.0
PJD3_k127_1318800_13 Phosphate acyltransferases K15781 - 2.3.1.51,3.1.3.3 0.0000000000000000000000000000008928 131.0
PJD3_k127_1318800_14 Multi-copper polyphenol oxidoreductase laccase K05810 - - 0.00000000000000000000000000005582 127.0
PJD3_k127_1318800_15 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000004047 124.0
PJD3_k127_1318800_16 PFAM DivIVA family protein K04074 - - 0.00000000000000000000000008551 118.0
PJD3_k127_1318800_17 cell wall formation K00075 - 1.3.1.98 0.0000000000000000000002879 98.0
PJD3_k127_1318800_18 Prokaryotic dksA/traR C4-type zinc finger K06204 - - 0.000000000000000002531 90.0
PJD3_k127_1318800_19 YGGT family K02221 - - 0.0000000000000316 75.0
PJD3_k127_1318800_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005936 590.0
PJD3_k127_1318800_20 Belongs to the UPF0235 family K09131 - - 0.0000000001042 70.0
PJD3_k127_1318800_21 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.00000002611 65.0
PJD3_k127_1318800_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 505.0
PJD3_k127_1318800_4 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 370.0
PJD3_k127_1318800_5 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 304.0
PJD3_k127_1318800_6 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001967 289.0
PJD3_k127_1318800_7 Alanine racemase, N-terminal domain K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000002639 236.0
PJD3_k127_1318800_8 Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000001488 221.0
PJD3_k127_1318800_9 Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA K09772 - - 0.000000000000000000000000000000000000000000000000000000000003077 214.0
PJD3_k127_1332408_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 8.165e-256 797.0
PJD3_k127_1332408_1 Cysteine-rich domain K08264 - 1.8.98.1 1.038e-205 648.0
PJD3_k127_1332408_10 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000008442 265.0
PJD3_k127_1332408_11 Conserved hypothetical protein 698 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002432 258.0
PJD3_k127_1332408_12 AIR synthase related protein, C-terminal domain K07123 - - 0.00000000000000000000000000000000000000000000000000000000000000000001438 251.0
PJD3_k127_1332408_13 NMT1-like family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000001549 243.0
PJD3_k127_1332408_14 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000004812 246.0
PJD3_k127_1332408_15 PFAM ABC transporter K02049,K15555 - - 0.0000000000000000000000000000000000000000000000000000000000174 226.0
PJD3_k127_1332408_16 - - - - 0.000000000000000000000000000000000000000000000000000004649 203.0
PJD3_k127_1332408_17 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000002917 213.0
PJD3_k127_1332408_18 Biotin-protein ligase, N terminal - - - 0.0000000000000000000000000000000000000000000000000005242 211.0
PJD3_k127_1332408_19 binding-protein-dependent transport systems inner membrane component K02050,K15552 - - 0.00000000000000000000000000000000000000000000000001336 192.0
PJD3_k127_1332408_2 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005416 524.0
PJD3_k127_1332408_20 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.0000000000000000000000000000000000000000002843 179.0
PJD3_k127_1332408_21 Glyoxalase-like domain K01759,K08234 - 4.4.1.5 0.000000000000000000000000000000000000008896 150.0
PJD3_k127_1332408_22 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000001312 160.0
PJD3_k127_1332408_23 PFAM 4Fe-4S binding domain - - - 0.000000000000000000000007295 116.0
PJD3_k127_1332408_24 4Fe-4S dicluster domain - - - 0.00000000000000000000004374 102.0
PJD3_k127_1332408_25 Acetyltransferase (GNAT) family - - - 0.00000000000000000000007798 113.0
PJD3_k127_1332408_26 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000001642 108.0
PJD3_k127_1332408_27 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000002808 102.0
PJD3_k127_1332408_28 Chlorite dismutase - - - 0.00000000000000002155 84.0
PJD3_k127_1332408_29 Domain of unknown function (DUF1858) - - - 0.0000000000000003434 93.0
PJD3_k127_1332408_3 Uroporphyrinogen decarboxylase (URO-D) K14080 - 2.1.1.246 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002572 492.0
PJD3_k127_1332408_30 Helix-turn-helix domain - - - 0.000000002243 65.0
PJD3_k127_1332408_31 Nitrate reductase gamma subunit K00374 - 1.7.5.1 0.0002536 52.0
PJD3_k127_1332408_4 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003405 449.0
PJD3_k127_1332408_5 Cysteine-rich domain K08264 - 1.8.98.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 429.0
PJD3_k127_1332408_6 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 399.0
PJD3_k127_1332408_7 PFAM CO dehydrogenase acetyl-CoA synthase delta subunit, TIM barrel K00197 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 331.0
PJD3_k127_1332408_8 Arginase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003673 289.0
PJD3_k127_1332408_9 COGs COG1131 ABC-type multidrug transport system ATPase component K01990,K20459 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002372 265.0
PJD3_k127_1339545_0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 522.0
PJD3_k127_1339545_1 Psort location Cytoplasmic, score 8.87 - - - 0.00000000000000000000000000000000000000000000001375 183.0
PJD3_k127_1339545_2 fatty acid beta-oxidation using acyl-CoA dehydrogenase K03522 - - 0.0000000000000000000000000000000001515 149.0
PJD3_k127_1339545_3 FAD linked oxidases, C-terminal domain - - - 0.00000000000000000000002324 99.0
PJD3_k127_1356225_0 Aromatic amino acid lyase K01745 - 4.3.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002766 589.0
PJD3_k127_1356225_1 Trimethylamine methyltransferase MttB (TMA methyltransferase) K14083 - 2.1.1.250 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002865 328.0
PJD3_k127_1356225_2 Belongs to the metallo-dependent hydrolases superfamily. HutI family K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000004537 259.0
PJD3_k127_1356225_3 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000001321 198.0
PJD3_k127_1356225_4 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity K04940 - 1.5.1.28 0.000000000000000000002793 110.0
PJD3_k127_136066_0 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 522.0
PJD3_k127_136066_1 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 445.0
PJD3_k127_136066_10 PFAM Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004377 278.0
PJD3_k127_136066_11 PFAM Radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001806 275.0
PJD3_k127_136066_12 Nudix N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001354 272.0
PJD3_k127_136066_13 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000001058 265.0
PJD3_k127_136066_14 Domain of unknown function (DUF4162) K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000008016 244.0
PJD3_k127_136066_15 membrane protein, hemolysin III homolog K11068 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000001716 235.0
PJD3_k127_136066_16 Catalytic LigB subunit of aromatic ring-opening dioxygenase K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000002845 239.0
PJD3_k127_136066_17 Peptide methionine sulfoxide reductase K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000003722 213.0
PJD3_k127_136066_18 Histidine biosynthesis bifunctional protein hisIE K01496,K11755 - 3.5.4.19,3.6.1.31 0.000000000000000000000000000000000000000000000000000000008688 206.0
PJD3_k127_136066_19 SelR domain K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000003729 199.0
PJD3_k127_136066_2 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 408.0
PJD3_k127_136066_20 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000001316 214.0
PJD3_k127_136066_21 Pyruvate kinase, alpha/beta domain K09126 - - 0.000000000000000000000000000000000000000000005717 178.0
PJD3_k127_136066_22 biosynthesis protein K08253 - 2.7.10.2 0.000000000000000000000000000000000000000000008634 180.0
PJD3_k127_136066_23 Alpha/beta hydrolase family K07020 - - 0.00000000000000000000000000000000000000000004778 170.0
PJD3_k127_136066_24 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000001736 169.0
PJD3_k127_136066_25 MviN-like protein K03980 - - 0.000000000000000000000000000000000003175 156.0
PJD3_k127_136066_26 Protein of unknown function (DUF523) - - - 0.0000000000000000000000000000000004451 137.0
PJD3_k127_136066_27 phosphinothricin N-acetyltransferase activity - - - 0.000000000000000000000000000001962 136.0
PJD3_k127_136066_28 alcohol dehydrogenase - - - 0.000000000000000000000000000005902 124.0
PJD3_k127_136066_29 Belongs to the universal stress protein A family - - - 0.000000000000000000000000002802 121.0
PJD3_k127_136066_3 PFAM zinc iron permease K07238 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 382.0
PJD3_k127_136066_31 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000004184 96.0
PJD3_k127_136066_32 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.0000000000000000008076 96.0
PJD3_k127_136066_33 metal cluster binding K19302 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.1.27 0.000000000000000001536 94.0
PJD3_k127_136066_34 Phospholipase_D-nuclease N-terminal - - - 0.00000000005372 66.0
PJD3_k127_136066_35 Domain of unknown function (DUF3786) - - - 0.00000003465 61.0
PJD3_k127_136066_36 COG3307 Lipid A core - O-antigen ligase and related enzymes - - - 0.00000007131 65.0
PJD3_k127_136066_4 PFAM Extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 344.0
PJD3_k127_136066_5 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 338.0
PJD3_k127_136066_6 CoA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 314.0
PJD3_k127_136066_7 Thiamine biosynthesis protein (ThiI) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001955 310.0
PJD3_k127_136066_8 Probable molybdopterin binding domain K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 298.0
PJD3_k127_136066_9 PFAM Iron-containing alcohol dehydrogenase K00001,K19954 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002785 298.0
PJD3_k127_1364259_0 ThiF family K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008346 358.0
PJD3_k127_1364259_1 Transcriptional regulator - - - 0.00000000000000000000000000004068 119.0
PJD3_k127_1364259_2 transcriptional - - - 0.0009997 50.0
PJD3_k127_1382534_0 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001553 385.0
PJD3_k127_1382534_1 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 293.0
PJD3_k127_1382534_2 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.000000000000000000000000000000000322 134.0
PJD3_k127_1382534_3 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid K00020 - 1.1.1.31 0.0000000000000000000000000226 111.0
PJD3_k127_1466395_0 cyclic 2,3-diphosphoglycerate synthetase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 513.0
PJD3_k127_1466395_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 441.0
PJD3_k127_1466395_10 - - - - 0.00000000000005178 82.0
PJD3_k127_1466395_11 - - - - 0.0000005318 54.0
PJD3_k127_1466395_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006093 322.0
PJD3_k127_1466395_3 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 311.0
PJD3_k127_1466395_4 CO dehydrogenase/acetyl-CoA synthase delta subunit K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000007518 260.0
PJD3_k127_1466395_5 Methionine synthase B12-binding module cap domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000005267 237.0
PJD3_k127_1466395_6 cobalamin binding - - - 0.0000000000000000000000000000000000000000000000000000007486 199.0
PJD3_k127_1466395_7 DNA-binding transcription factor activity K03710 - - 0.000000000000000000000000000000000000000000000000001632 196.0
PJD3_k127_1466395_8 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000001539 191.0
PJD3_k127_1466395_9 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000005097 143.0
PJD3_k127_1487976_0 Cytochrome c3 - - - 0.00000000000000000000000000000000000000000000000000000000000000005773 235.0
PJD3_k127_1487976_1 denitrification pathway - - - 0.0000000000000000000000000000000000000000000000000000000000000003504 227.0
PJD3_k127_1487976_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000000000000000000000000000005803 175.0
PJD3_k127_1487976_3 Prokaryotic cytochrome b561 - - - 0.0000000000000000000000000000000000000001502 162.0
PJD3_k127_1487976_4 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.000000000000000000000000000000000000001205 158.0
PJD3_k127_1487976_5 NapC/NirT cytochrome c family, N-terminal region - - - 0.0000000000000000000000000000000008237 143.0
PJD3_k127_1487976_6 denitrification pathway - - - 0.000000000000000000000026 109.0
PJD3_k127_1487976_7 NapC/NirT cytochrome c family, N-terminal region - - - 0.000000000000000000002349 104.0
PJD3_k127_1487976_8 Prokaryotic cytochrome b561 - - - 0.000000000000000000005391 106.0
PJD3_k127_1487976_9 Cytochrome c7 and related cytochrome c - - - 0.00000000000000006237 92.0
PJD3_k127_1494202_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 1.532e-204 647.0
PJD3_k127_1494202_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 453.0
PJD3_k127_1494202_2 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11779,K11784 - 1.21.98.1,2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004175 425.0
PJD3_k127_1494202_3 intramolecular transferase activity, transferring amino groups K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000002062 255.0
PJD3_k127_1494202_4 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000009524 252.0
PJD3_k127_1494202_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000008016 218.0
PJD3_k127_1494202_6 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000000000118 211.0
PJD3_k127_1494202_7 Modulates transcription in response to changes in cellular NADH NAD( ) redox state K01926 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000003208 200.0
PJD3_k127_1494202_8 domain protein K13735,K20276 - - 0.000000000000004677 87.0
PJD3_k127_1494202_9 Tetratricopeptide repeat - - - 0.000001501 59.0
PJD3_k127_1494338_0 glycogen phosphorylase activity K00688,K00691 - 2.4.1.1,2.4.1.8 2.164e-309 969.0
PJD3_k127_1494338_1 Belongs to the heme-copper respiratory oxidase family - - - 6.924e-217 702.0
PJD3_k127_1494338_10 Protein of unknown function (DUF1641) - - - 0.0000000000000000000000000000000000000000001426 167.0
PJD3_k127_1494338_11 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000408 148.0
PJD3_k127_1494338_12 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000002062 126.0
PJD3_k127_1494338_13 PFAM Cold-shock protein, DNA-binding K03704 - - 0.000000000000000000000000001395 112.0
PJD3_k127_1494338_14 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.00000000000000000000002284 102.0
PJD3_k127_1494338_15 Belongs to the universal stress protein A family - - - 0.00000000000000006191 88.0
PJD3_k127_1494338_16 Redoxin - - - 0.00000002086 66.0
PJD3_k127_1494338_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 1.569e-195 617.0
PJD3_k127_1494338_3 DsrE/DsrF/DrsH-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 290.0
PJD3_k127_1494338_4 Cytochrome c oxidase subunit K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003442 289.0
PJD3_k127_1494338_5 binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001183 256.0
PJD3_k127_1494338_6 Queuosine biosynthesis protein QueC K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000009479 204.0
PJD3_k127_1494338_7 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000001342 191.0
PJD3_k127_1494338_8 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000003473 176.0
PJD3_k127_1494338_9 DsrC like protein K11179 - - 0.0000000000000000000000000000000000000000000004706 169.0
PJD3_k127_1498824_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 4.94e-265 825.0
PJD3_k127_1498824_1 Orotidine 5'-phosphate decarboxylase / HUMPS family K13831 - 4.1.2.43,5.3.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 547.0
PJD3_k127_1498824_10 FR47-like protein K03789 - 2.3.1.128 0.0000000000000000000004176 106.0
PJD3_k127_1498824_11 Glycoprotease family K14742 GO:0002949,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0070525,GO:0071704,GO:0071944,GO:0090304,GO:1901360 - 0.0000000000000002143 90.0
PJD3_k127_1498824_12 PspC domain K03973 - - 0.000000008957 65.0
PJD3_k127_1498824_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007839 344.0
PJD3_k127_1498824_3 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007774 310.0
PJD3_k127_1498824_4 Uracil-DNA glycosylase, family 4 K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000004778 201.0
PJD3_k127_1498824_5 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000004888 163.0
PJD3_k127_1498824_6 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0019899,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0035375,GO:0035966,GO:0040007,GO:0042221,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065007,GO:0071944,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000858 129.0
PJD3_k127_1498824_7 NADP oxidoreductase coenzyme F420-dependent - - - 0.0000000000000000000000000000004351 141.0
PJD3_k127_1498824_8 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000004855 124.0
PJD3_k127_1498824_9 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000001023 113.0
PJD3_k127_1500265_0 PFAM aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009676 572.0
PJD3_k127_1500265_1 Putative cell wall binding repeat 2 - - - 0.000000000000000000000000000000000006285 158.0
PJD3_k127_1500265_2 Multicopper oxidase - - - 0.000000000000000000145 94.0
PJD3_k127_1500265_3 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.000000000000008124 76.0
PJD3_k127_1501247_0 Peptidase M6, immune inhibitor A K09607 - - 9.382e-279 873.0
PJD3_k127_1501247_1 Pirin K06911 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 343.0
PJD3_k127_1505145_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002119 546.0
PJD3_k127_1505145_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004033 474.0
PJD3_k127_1505145_10 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.00000000000000001821 89.0
PJD3_k127_1505145_11 Preprotein translocase SecG subunit - - - 0.00000002837 57.0
PJD3_k127_1505145_2 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 452.0
PJD3_k127_1505145_3 PFAM extracellular solute-binding protein, family 5 K02035,K15580 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 416.0
PJD3_k127_1505145_4 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 365.0
PJD3_k127_1505145_5 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 334.0
PJD3_k127_1505145_6 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005941 285.0
PJD3_k127_1505145_7 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005799 274.0
PJD3_k127_1505145_8 May be required for sporulation K09762 - - 0.00000000000000000000000000000000000000000000000000119 203.0
PJD3_k127_1505145_9 ECF sigma factor - - - 0.000000000000000000000001214 111.0
PJD3_k127_1506954_0 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 1.916e-276 860.0
PJD3_k127_1506954_1 COGs COG1131 ABC-type multidrug transport system ATPase component K01990,K20459 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 306.0
PJD3_k127_1506954_2 cysteine-type peptidase activity - - - 0.000000000000000000000001077 117.0
PJD3_k127_1511335_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 1.643e-259 809.0
PJD3_k127_1511335_1 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008449 578.0
PJD3_k127_1511335_10 Archaeal transcriptional regulator TrmB - - - 0.00000000000000000000000000000000000001408 158.0
PJD3_k127_1511335_11 Domain of unknown function (DUF4212) - - - 0.000000000000000000000001097 105.0
PJD3_k127_1511335_12 Protein of unknown function (DUF2619) - - - 0.00000006845 58.0
PJD3_k127_1511335_2 Glucose inhibited division protein A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 539.0
PJD3_k127_1511335_3 PFAM VWA domain containing CoxE-like protein K09989 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 484.0
PJD3_k127_1511335_4 Magnesium chelatase, subunit ChlI - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007199 409.0
PJD3_k127_1511335_5 ABC-type nitrate sulfonate bicarbonate transport system ATPase component K02049,K15555 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003859 354.0
PJD3_k127_1511335_6 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 358.0
PJD3_k127_1511335_7 COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000831 314.0
PJD3_k127_1511335_8 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003538 299.0
PJD3_k127_1511335_9 Pyruvate ferredoxin/flavodoxin oxidoreductase K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003937 299.0
PJD3_k127_1525406_0 Belongs to the peptidase S8 family K17734 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005044 322.0
PJD3_k127_1525406_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000001446 264.0
PJD3_k127_1525406_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000001545 257.0
PJD3_k127_1525406_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.00000000000000000000000000000000000000000000000000000002575 208.0
PJD3_k127_1525406_4 O-Antigen ligase - - - 0.000000000000000000000002972 119.0
PJD3_k127_1527190_0 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 2.909e-243 762.0
PJD3_k127_1527190_1 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 1.707e-206 661.0
PJD3_k127_1527190_10 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000001829 158.0
PJD3_k127_1527190_11 Major Facilitator - - - 0.0000000000000000000000000000000483 141.0
PJD3_k127_1527190_12 Zincin-like metallopeptidase - - - 0.000000000000000000000000009076 120.0
PJD3_k127_1527190_13 CAAX protease self-immunity K07052 - - 0.000000000000009275 83.0
PJD3_k127_1527190_14 Helix-turn-helix XRE-family like proteins - - - 0.0000000009897 66.0
PJD3_k127_1527190_2 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 317.0
PJD3_k127_1527190_3 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007513 287.0
PJD3_k127_1527190_4 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016072,GO:0016075,GO:0019439,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 2.7.7.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000668 276.0
PJD3_k127_1527190_5 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000008801 257.0
PJD3_k127_1527190_6 PFAM Cobyrinic acid ac-diamide synthase K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001335 254.0
PJD3_k127_1527190_7 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000007797 216.0
PJD3_k127_1527190_8 PFAM Formiminotransferase-cyclodeaminase - - - 0.0000000000000000000000000000000000000000003814 165.0
PJD3_k127_1527190_9 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000001291 161.0
PJD3_k127_1573313_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 4.095e-226 715.0
PJD3_k127_1573313_1 pfam php K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 481.0
PJD3_k127_1573313_10 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000246 195.0
PJD3_k127_1573313_11 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000002971 150.0
PJD3_k127_1573313_12 G5 - - - 0.00000000000000000000000000000001371 134.0
PJD3_k127_1573313_13 PFAM Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000008179 138.0
PJD3_k127_1573313_14 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000003499 132.0
PJD3_k127_1573313_15 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000004675 124.0
PJD3_k127_1573313_16 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000001361 133.0
PJD3_k127_1573313_17 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000000001582 115.0
PJD3_k127_1573313_18 membrane - - - 0.00000000000000000000007726 109.0
PJD3_k127_1573313_19 - - - - 0.000000000000001371 85.0
PJD3_k127_1573313_2 Belongs to the thiolase family K00626 GO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008481 443.0
PJD3_k127_1573313_20 - - - - 0.00000000006088 72.0
PJD3_k127_1573313_21 translation release factor activity K03265 - - 0.00000000009207 74.0
PJD3_k127_1573313_22 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000005855 65.0
PJD3_k127_1573313_23 MobA-like NTP transferase domain K00087,K07141 - 1.17.1.4,2.7.7.76 0.000002293 52.0
PJD3_k127_1573313_24 Domain of unknown function (DUF3870) - - - 0.000002892 55.0
PJD3_k127_1573313_25 PspC domain K03973 - - 0.000003141 53.0
PJD3_k127_1573313_26 - - - - 0.00002448 56.0
PJD3_k127_1573313_27 - - - - 0.0001741 52.0
PJD3_k127_1573313_3 acyl-CoA dehydrogenase K18244 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006503 386.0
PJD3_k127_1573313_4 SPFH domain-Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000852 357.0
PJD3_k127_1573313_5 LAO AO transport system ATPase K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006405 353.0
PJD3_k127_1573313_6 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000111 288.0
PJD3_k127_1573313_7 Predicted membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000004974 268.0
PJD3_k127_1573313_8 Carbon-nitrogen hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000002266 246.0
PJD3_k127_1573313_9 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000005746 232.0
PJD3_k127_1576821_0 Multicopper oxidase - - - 4e-323 1007.0
PJD3_k127_1576821_1 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 1.681e-199 636.0
PJD3_k127_1576821_10 KR domain - - - 0.000000000000000000000000000000000000000000000000000000000000005617 241.0
PJD3_k127_1576821_11 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000002301 222.0
PJD3_k127_1576821_12 Spermidine putrescine-binding periplasmic protein K11069 - - 0.00000000000000000000000000000000000000000007818 181.0
PJD3_k127_1576821_13 HD domain - - - 0.000000000000000000000000000000000768 149.0
PJD3_k127_1576821_2 COG1233 Phytoene dehydrogenase and related proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006162 547.0
PJD3_k127_1576821_3 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006858 538.0
PJD3_k127_1576821_4 PFAM Peptidase M29, aminopeptidase II K19689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008903 418.0
PJD3_k127_1576821_5 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003982 431.0
PJD3_k127_1576821_6 Uncharacterised protein family (UPF0261) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 371.0
PJD3_k127_1576821_7 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 295.0
PJD3_k127_1576821_8 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001845 259.0
PJD3_k127_1576821_9 LysR substrate binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003093 237.0
PJD3_k127_1623762_0 Aminotransferase class-III K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 419.0
PJD3_k127_1623762_1 Transcription regulator K03718 - - 0.000000000000000000000000000000000000004392 154.0
PJD3_k127_1638958_0 Domain of unknown function (DUF1998) K06877 - - 4.981e-242 772.0
PJD3_k127_1638958_1 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002149 512.0
PJD3_k127_1638958_10 ABC-2 family transporter protein - - - 0.00000000000000000000000000000002005 143.0
PJD3_k127_1638958_11 PFAM HAD-superfamily hydrolase subfamily IB - - - 0.00000000000000000000000000000002358 134.0
PJD3_k127_1638958_12 SMART protein phosphatase 2C domain protein - - - 0.0000000000000000000000000000001306 136.0
PJD3_k127_1638958_13 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.00000000000000000000000000001067 128.0
PJD3_k127_1638958_14 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.0000000000000000000000127 113.0
PJD3_k127_1638958_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001498 437.0
PJD3_k127_1638958_3 PFAM ABC transporter related K09695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 307.0
PJD3_k127_1638958_4 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001546 266.0
PJD3_k127_1638958_5 Glycoside hydrolase family 3 domain protein K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000004805 209.0
PJD3_k127_1638958_6 PFAM ABC-2 type transporter K09694 - - 0.000000000000000000000000000000000000000000000000000007714 202.0
PJD3_k127_1638958_7 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000006351 197.0
PJD3_k127_1638958_8 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000002847 174.0
PJD3_k127_1638958_9 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000000000000000000000000000000003171 164.0
PJD3_k127_1665910_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1305.0
PJD3_k127_1665910_1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate - - - 0.0 1303.0
PJD3_k127_1665910_10 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000002963 260.0
PJD3_k127_1665910_11 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP - - - 0.000000000000000000000000000000000000000005144 163.0
PJD3_k127_1665910_12 Protein of unknown function (DUF1638) - - - 0.000000000000000000000000000000000000005877 161.0
PJD3_k127_1665910_13 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000003344 150.0
PJD3_k127_1665910_14 bacterial (prokaryotic) histone like domain - - - 0.000000000000000000000000249 108.0
PJD3_k127_1665910_15 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000006681 109.0
PJD3_k127_1665910_16 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) K10672,K10794 - 1.21.4.1,1.21.4.2 0.0000000000000000000004873 107.0
PJD3_k127_1665910_17 - - - - 0.00000000000000000003989 93.0
PJD3_k127_1665910_18 LysM domain - - - 0.000007661 58.0
PJD3_k127_1665910_19 Roadblock/LC7 domain - - - 0.0002776 49.0
PJD3_k127_1665910_2 PFAM AMP-dependent synthetase and ligase K01908 - 6.2.1.17 2e-323 999.0
PJD3_k127_1665910_3 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 2.923e-236 740.0
PJD3_k127_1665910_4 Putative modulator of DNA gyrase K03568 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004961 419.0
PJD3_k127_1665910_5 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004765 354.0
PJD3_k127_1665910_6 pfkB family carbohydrate kinase K00882 - 2.7.1.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 300.0
PJD3_k127_1665910_7 Threonyl alanyl tRNA synthetase SAD K07050 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 292.0
PJD3_k127_1665910_8 PFAM peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005333 298.0
PJD3_k127_1665910_9 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591 - 4.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000007211 260.0
PJD3_k127_1674010_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 4.311e-264 818.0
PJD3_k127_1674010_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 2.051e-234 733.0
PJD3_k127_1674010_2 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 589.0
PJD3_k127_1674010_3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 453.0
PJD3_k127_1674010_4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000004709 258.0
PJD3_k127_1674010_5 Phenylphosphate carboxylase gamma subunit (Phenyl_P_gamma) - - - 0.0000000000000000000000000000006875 123.0
PJD3_k127_169846_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 1.073e-227 720.0
PJD3_k127_169846_1 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K06001 - 4.2.1.20 4.357e-205 646.0
PJD3_k127_169846_10 Potassium transporter peripheral membrane component K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 357.0
PJD3_k127_169846_11 D-isomer specific 2-hydroxyacid dehydrogenase K00015 - 1.1.1.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007948 346.0
PJD3_k127_169846_12 PFAM major facilitator superfamily MFS_1 K06902 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007787 312.0
PJD3_k127_169846_13 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009122 272.0
PJD3_k127_169846_14 PFAM TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000009918 196.0
PJD3_k127_169846_15 Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000008976 177.0
PJD3_k127_169846_16 Predicted metal-binding protein (DUF2284) - - - 0.000000000000000000000000000000002313 137.0
PJD3_k127_169846_17 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000002092 90.0
PJD3_k127_169846_18 Purine catabolism regulatory protein-like family - - - 0.000000000000000004591 97.0
PJD3_k127_169846_19 - - - - 0.0000000000000211 79.0
PJD3_k127_169846_2 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002857 512.0
PJD3_k127_169846_20 - - - - 0.000001544 57.0
PJD3_k127_169846_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 457.0
PJD3_k127_169846_4 Belongs to the glycosyl hydrolase 57 family K01176,K07405 - 3.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 458.0
PJD3_k127_169846_5 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000578 439.0
PJD3_k127_169846_6 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 444.0
PJD3_k127_169846_7 Potassium uptake protein, TrkH family K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006576 426.0
PJD3_k127_169846_8 transferase activity, transferring glycosyl groups K02844 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0008653,GO:0008919,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0046401,GO:0046527,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 420.0
PJD3_k127_169846_9 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006702 389.0
PJD3_k127_1773131_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 519.0
PJD3_k127_1773131_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005505 456.0
PJD3_k127_1773131_10 Metal dependent phosphohydrolases with conserved 'HD' motif. K06951 - - 0.00000000000000000000000000000000000000000000000000000001706 202.0
PJD3_k127_1773131_11 PFAM Rhomboid family protein - - - 0.0000000000000000000000000000000000000000000000000000001421 207.0
PJD3_k127_1773131_12 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000004711 206.0
PJD3_k127_1773131_13 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000002865 176.0
PJD3_k127_1773131_14 Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in the first half-reaction K00824 - 2.6.1.21 0.00000000000000000000000000000000000000001177 162.0
PJD3_k127_1773131_15 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000005743 141.0
PJD3_k127_1773131_16 glycosyl transferase family 2 K07011 - - 0.000000000000000000000000000000006321 140.0
PJD3_k127_1773131_17 F5/8 type C domain - - - 0.0000000000000000000000005653 116.0
PJD3_k127_1773131_18 - - - - 0.00000000000002183 85.0
PJD3_k127_1773131_19 NUDIX domain - - - 0.00002005 54.0
PJD3_k127_1773131_2 Belongs to the GPI family K01810 - 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007987 441.0
PJD3_k127_1773131_3 Threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007302 363.0
PJD3_k127_1773131_4 NADPH-dependent FMN reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 332.0
PJD3_k127_1773131_5 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031668,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002939 317.0
PJD3_k127_1773131_6 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009413 310.0
PJD3_k127_1773131_7 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007537 271.0
PJD3_k127_1773131_8 PFAM Class II aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000001466 253.0
PJD3_k127_1773131_9 diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000001805 237.0
PJD3_k127_18203_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1625.0
PJD3_k127_18203_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1263.0
PJD3_k127_18203_10 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000002971 149.0
PJD3_k127_18203_11 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000004738 89.0
PJD3_k127_18203_13 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00001543 53.0
PJD3_k127_18203_2 cadmium-exporting ATPase K01534 - 3.6.3.3,3.6.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 537.0
PJD3_k127_18203_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009529 311.0
PJD3_k127_18203_4 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000301 236.0
PJD3_k127_18203_5 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000002573 224.0
PJD3_k127_18203_6 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000008929 214.0
PJD3_k127_18203_7 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 - 0.0000000000000000000000000000000000000000000000000000000001064 207.0
PJD3_k127_18203_8 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000002287 165.0
PJD3_k127_18203_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000004426 163.0
PJD3_k127_1864999_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 5.542e-304 972.0
PJD3_k127_1864999_1 Major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 381.0
PJD3_k127_1864999_2 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002657 349.0
PJD3_k127_1864999_3 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002668 329.0
PJD3_k127_1864999_4 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007262 265.0
PJD3_k127_1864999_5 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000003094 241.0
PJD3_k127_1864999_6 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000592 233.0
PJD3_k127_1864999_7 Domain of unknown function (DUF2437) - - - 0.000000000000000000000000000000000000000000000000000000000000004919 226.0
PJD3_k127_1864999_8 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.00000000000000000000000000000000000000000000000000000000000001615 229.0
PJD3_k127_1864999_9 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000002766 208.0
PJD3_k127_1893601_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000638 543.0
PJD3_k127_1893601_1 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 539.0
PJD3_k127_1893601_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006914 368.0
PJD3_k127_1893601_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000003194 162.0
PJD3_k127_1893601_4 - - - - 0.00000000000000000000000000000000004158 143.0
PJD3_k127_1893601_5 heat shock protein binding - - - 0.00000000000000000000000000000000007408 150.0
PJD3_k127_1893601_6 Bacterial transcription activator, effector binding domain - - - 0.000000000000000000000000002441 117.0
PJD3_k127_1893601_7 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.00000000000000000000001561 111.0
PJD3_k127_1893601_8 Nucleotidyltransferase domain - - - 0.0000000000000000000023 102.0
PJD3_k127_1893601_9 Belongs to the TorC TorY family K03532,K07821 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0020037,GO:0022900,GO:0031224,GO:0031226,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363 - 0.000008018 58.0
PJD3_k127_1912160_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 483.0
PJD3_k127_1912160_1 PFAM Homoserine dehydrogenase K00003 - 1.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 365.0
PJD3_k127_1912160_2 5TM Receptors of the LytS-YhcK type, transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 318.0
PJD3_k127_1912160_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001512 279.0
PJD3_k127_1912160_4 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000003108 198.0
PJD3_k127_1912160_5 signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000000000000000000000000000000000000001998 200.0
PJD3_k127_1912160_6 PFAM EamA-like transporter family - - - 0.000000000000000000000000000000007635 139.0
PJD3_k127_1912160_7 Cytidylate kinase-like family K00760 - 2.4.2.8 0.00000000000000000000000000000008971 132.0
PJD3_k127_1912160_8 carboxylic ester hydrolase activity K01259,K19311 - 3.4.11.5 0.00000000000000000000000000009777 130.0
PJD3_k127_1912160_9 Metal-sensitive transcriptional repressor K21600 - - 0.0000000000000001782 86.0
PJD3_k127_1921727_0 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 353.0
PJD3_k127_1921727_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 297.0
PJD3_k127_1921727_2 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.00000000000000000000000000000000000000000000000000000000000065 216.0
PJD3_k127_1921727_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000001859 220.0
PJD3_k127_1921727_4 Purine catabolism regulatory protein-like family K09684 - - 0.000000000000000000000000000000000000000000000007677 192.0
PJD3_k127_1921727_5 Purine catabolism regulatory protein-like family K09684 - - 0.00000000000000000000000000000000000000000000001814 191.0
PJD3_k127_1961973_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335,K18331 - 1.12.1.3,1.6.5.3 3.104e-222 703.0
PJD3_k127_1961973_1 Molybdopterin oxidoreductase Fe4S4 domain K00123,K22341 - 1.17.1.11,1.17.1.9 3.016e-203 646.0
PJD3_k127_1961973_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 453.0
PJD3_k127_1961973_3 COG COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 441.0
PJD3_k127_1961973_4 TIGRFAM formate dehydrogenase, alpha subunit K00336,K05299 - 1.17.1.10,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 378.0
PJD3_k127_1961973_5 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 323.0
PJD3_k127_1961973_6 PFAM dihydropteroate synthase, DHPS K15023 - 2.1.1.258 0.00000000000000000000000000000000000000000000000000000000000000002557 233.0
PJD3_k127_1961973_7 PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit K00334,K18330 - 1.12.1.3,1.6.5.3 0.000000000000000000000000000000000000000000000000000009023 195.0
PJD3_k127_1961973_8 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000388 113.0
PJD3_k127_1961973_9 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.000001245 57.0
PJD3_k127_1986375_0 Urocanase C-terminal domain K01712 - 4.2.1.49 2.118e-306 946.0
PJD3_k127_1986375_1 Molybdopterin oxidoreductase Fe4S4 domain - - - 9.052e-252 794.0
PJD3_k127_1986375_10 Pyridine nucleotide-disulphide oxidoreductase K22405 - 1.6.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003019 313.0
PJD3_k127_1986375_11 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002464 288.0
PJD3_k127_1986375_12 Methionine synthase B12-binding module cap domain protein - - - 0.0000000000000000000000000000000000000000000000000000000002709 226.0
PJD3_k127_1986375_13 helix_turn_helix isocitrate lyase regulation - - - 0.000000000000000000000000000000000000000000000008888 181.0
PJD3_k127_1986375_14 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000002133 184.0
PJD3_k127_1986375_15 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000002196 166.0
PJD3_k127_1986375_16 Formiminotransferase-cyclodeaminase - - - 0.00000000000000000000000000000000000001984 151.0
PJD3_k127_1986375_17 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.000000000000000001135 88.0
PJD3_k127_1986375_18 helix_turn_helix isocitrate lyase regulation - - - 0.000000000007463 77.0
PJD3_k127_1986375_2 Histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 551.0
PJD3_k127_1986375_3 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007723 489.0
PJD3_k127_1986375_4 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 473.0
PJD3_k127_1986375_5 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 387.0
PJD3_k127_1986375_6 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001632 369.0
PJD3_k127_1986375_7 Formiminotransferase domain, N-terminal subdomain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 345.0
PJD3_k127_1986375_8 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006977 346.0
PJD3_k127_1986375_9 COGs COG4689 Acetoacetate decarboxylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 322.0
PJD3_k127_2007827_0 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 1.329e-285 888.0
PJD3_k127_2007827_1 CO dehydrogenase acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008953 477.0
PJD3_k127_2007827_2 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000005363 135.0
PJD3_k127_2017222_0 Mannose-6-phosphate isomerase - - - 3.958e-199 634.0
PJD3_k127_2017222_1 beta-1,4-mannooligosaccharide phosphorylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004488 514.0
PJD3_k127_2019804_0 Aminotransferase class-III - - - 4.605e-228 712.0
PJD3_k127_2019804_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 2.947e-224 714.0
PJD3_k127_2019804_10 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 514.0
PJD3_k127_2019804_11 PFAM Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00170 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 422.0
PJD3_k127_2019804_12 Amidohydrolase family K01464 - 3.5.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 428.0
PJD3_k127_2019804_13 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 413.0
PJD3_k127_2019804_14 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 386.0
PJD3_k127_2019804_15 hydro-lyase, Fe-S type, tartrate fumarate subfamily, alpha subunit K01677 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 362.0
PJD3_k127_2019804_16 Belongs to the ABC transporter superfamily K02017 - 3.6.3.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 355.0
PJD3_k127_2019804_17 electron transfer flavoprotein, alpha subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 319.0
PJD3_k127_2019804_18 Carbon-nitrogen hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 302.0
PJD3_k127_2019804_19 Selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005961 299.0
PJD3_k127_2019804_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 1.24e-219 700.0
PJD3_k127_2019804_20 Electron transfer flavoprotein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 289.0
PJD3_k127_2019804_21 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008996 296.0
PJD3_k127_2019804_22 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006822 265.0
PJD3_k127_2019804_23 TIGRFAM molybdate ABC transporter, inner membrane subunit K02018 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002286 262.0
PJD3_k127_2019804_24 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000008315 250.0
PJD3_k127_2019804_25 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000001177 246.0
PJD3_k127_2019804_26 TIGRFAM molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001408 248.0
PJD3_k127_2019804_27 Fe-S type, tartrate fumarate subfamily, beta K01678 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000005601 249.0
PJD3_k127_2019804_28 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000001432 249.0
PJD3_k127_2019804_29 oxidoreductase gamma subunit K00172 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000001956 217.0
PJD3_k127_2019804_3 Acyl-CoA dehydrogenase, C-terminal domain - - - 6.257e-209 653.0
PJD3_k127_2019804_30 XdhC Rossmann domain K07402 - - 0.000000000000000000000000000000000000000000000000000000000001172 223.0
PJD3_k127_2019804_31 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000000000001527 206.0
PJD3_k127_2019804_32 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000003274 176.0
PJD3_k127_2019804_33 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000000000000000005114 172.0
PJD3_k127_2019804_34 Domain of Unknown function (DUF542) K07322 GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0030091,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0071704,GO:1901564 - 0.000000000000000000000000000000000000000000001458 174.0
PJD3_k127_2019804_35 TIGRFAM Succinate dehydrogenase, cytochrome b556 subunit K00241 - - 0.000000000000000001907 96.0
PJD3_k127_2019804_36 Regulator of polyketide synthase expression K09684 - - 0.00000000000000009703 86.0
PJD3_k127_2019804_37 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 - - 0.0000000000001896 78.0
PJD3_k127_2019804_38 Bacterial regulatory proteins, tetR family - - - 0.000000002445 67.0
PJD3_k127_2019804_4 PFAM malic K00027 - 1.1.1.38 4.625e-205 645.0
PJD3_k127_2019804_5 PFAM fumarate reductase succinate dehydrogenase flavoprotein K00239 - 1.3.5.1,1.3.5.4 1.756e-203 652.0
PJD3_k127_2019804_6 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 589.0
PJD3_k127_2019804_7 2-oxoacid ferredoxin oxidoreductase, alpha subunit K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 554.0
PJD3_k127_2019804_8 Belongs to the thiolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006493 552.0
PJD3_k127_2019804_9 Belongs to the aldehyde dehydrogenase family K00140 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 525.0
PJD3_k127_2154857_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 5.316e-214 674.0
PJD3_k127_2154857_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 4.51e-202 647.0
PJD3_k127_2154857_10 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.000000000000000000000000000000000000000000000000000000001571 215.0
PJD3_k127_2154857_11 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000009289 166.0
PJD3_k127_2154857_12 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.000000000000000000000000000000000001895 139.0
PJD3_k127_2154857_13 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000001919 109.0
PJD3_k127_2154857_14 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000006882 102.0
PJD3_k127_2154857_15 FR47-like protein - - - 0.00000000000000002674 89.0
PJD3_k127_2154857_16 Protein of unknown function (DUF1648) - - - 0.0000001996 56.0
PJD3_k127_2154857_2 PFAM Glycosyl transferase, family 20 K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 544.0
PJD3_k127_2154857_3 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 537.0
PJD3_k127_2154857_4 serine-type aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 479.0
PJD3_k127_2154857_5 SMART Metal-dependent phosphohydrolase, HD region K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 394.0
PJD3_k127_2154857_6 Calcineurin-like phosphoesterase K03547 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 338.0
PJD3_k127_2154857_7 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006027 289.0
PJD3_k127_2154857_8 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001625 297.0
PJD3_k127_2154857_9 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000006405 236.0
PJD3_k127_2181181_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0 1119.0
PJD3_k127_2181181_1 Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA K12297 - 2.1.1.173,2.1.1.264 7.573e-244 779.0
PJD3_k127_2181181_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 588.0
PJD3_k127_2181181_3 ATPase BadF BadG BcrA BcrD type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 602.0
PJD3_k127_2181181_4 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000005688 233.0
PJD3_k127_2181181_5 Stage II sporulation protein E - - - 0.0000000000000000000000000000000000000000000968 180.0
PJD3_k127_2181181_6 PFAM Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.00000000000000000000000000000000000000005547 155.0
PJD3_k127_2181181_7 PFAM Glutaredoxin K06191 - - 0.0000000000000000000000002728 108.0
PJD3_k127_2181181_8 phenylacetic acid degradation protein K02614 GO:0003674,GO:0003824,GO:0016289,GO:0016787,GO:0016788,GO:0016790 - 0.0000000003325 70.0
PJD3_k127_2183491_0 PFAM Bile acid sodium symporter K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 526.0
PJD3_k127_2183491_1 beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002935 454.0
PJD3_k127_2183491_10 Short C-terminal domain K08982 - - 0.0000003604 57.0
PJD3_k127_2183491_2 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000975 438.0
PJD3_k127_2183491_3 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008298 332.0
PJD3_k127_2183491_4 PFAM regulatory protein, LysR - - - 0.0000000000000000000000000000000000000000000000000000000001024 214.0
PJD3_k127_2183491_5 Required for chromosome condensation and partitioning K03529 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000007394 143.0
PJD3_k127_2183491_6 Putative inner membrane exporter, YdcZ K09936 - - 0.00000000000000000000000000006163 123.0
PJD3_k127_2183491_7 PFAM regulatory protein, ArsR K03892 - - 0.0000000000000000000001036 102.0
PJD3_k127_2183491_8 Does not function as a glutathione-disulfide oxidoreductase in the presence of glutathione and glutathione reductase. Has low thioredoxin activity in vitro - - - 0.00000000000000000005004 92.0
PJD3_k127_2183491_9 - - - - 0.0000000000000795 81.0
PJD3_k127_2243086_0 L-asparaginase II - - - 0.000000000000000000000000000000000000000000000000000000000001315 233.0
PJD3_k127_2243086_1 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000001928 125.0
PJD3_k127_2243086_2 PAS fold - - - 0.0006314 45.0
PJD3_k127_2247524_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 561.0
PJD3_k127_2247524_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 323.0
PJD3_k127_2247524_10 Belongs to the UPF0102 family K07460 - - 0.0000000003617 63.0
PJD3_k127_2247524_2 RecF/RecN/SMC N terminal domain K03529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003536 263.0
PJD3_k127_2247524_3 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000001829 226.0
PJD3_k127_2247524_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000004553 180.0
PJD3_k127_2247524_5 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000007796 174.0
PJD3_k127_2247524_6 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000006555 177.0
PJD3_k127_2247524_7 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.000000000000000000000000000006907 126.0
PJD3_k127_2247524_8 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000005345 111.0
PJD3_k127_2247524_9 Belongs to the UPF0109 family K06960 - - 0.0000000000000000000004522 98.0
PJD3_k127_2276199_0 PFAM Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738,K19515 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 469.0
PJD3_k127_2276199_1 PFAM Carboxylyase-related protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004668 350.0
PJD3_k127_2276199_2 Dihydroorotate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001621 272.0
PJD3_k127_2276199_3 Cysteine-rich domain K00113 - 1.1.5.3 0.00000000000000000002744 103.0
PJD3_k127_243825_0 TIGRFAM exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000111 253.0
PJD3_k127_243825_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000003899 218.0
PJD3_k127_243825_2 Tetratricopeptide repeat - - - 0.00006563 53.0
PJD3_k127_2476221_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.032e-253 794.0
PJD3_k127_2476221_1 Acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571,K01960 - 4.1.1.3,6.4.1.1 1.181e-222 707.0
PJD3_k127_2476221_10 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003377 287.0
PJD3_k127_2476221_11 Xaa-Pro dipeptidase K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000006765 273.0
PJD3_k127_2476221_12 3-dehydroquinate synthase activity K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000002843 240.0
PJD3_k127_2476221_13 ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000004969 235.0
PJD3_k127_2476221_14 Type IV leader peptidase family K02654 - 3.4.23.43 0.00000000000000000000000000000000000000000000000000000000000001784 223.0
PJD3_k127_2476221_15 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000009884 204.0
PJD3_k127_2476221_16 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000003654 204.0
PJD3_k127_2476221_17 Type IV pilus assembly protein PilM; K02662 - - 0.0000000000000000000000000000000000000000000000000002713 199.0
PJD3_k127_2476221_18 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000002966 152.0
PJD3_k127_2476221_19 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.00000000000000000000000000000000001593 143.0
PJD3_k127_2476221_2 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 610.0
PJD3_k127_2476221_20 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.00000000000000000000000000000000001852 142.0
PJD3_k127_2476221_21 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 GO:0008150,GO:0040007 - 0.000000000000000000000337 101.0
PJD3_k127_2476221_22 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000003689 100.0
PJD3_k127_2476221_23 carbon utilization K02664,K02665,K12280 - - 0.00000000000000001398 90.0
PJD3_k127_2476221_24 PFAM Fimbrial assembly family protein K02663 - - 0.0003764 51.0
PJD3_k127_2476221_25 Metallo-beta-lactamase superfamily - - - 0.0009931 50.0
PJD3_k127_2476221_3 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 527.0
PJD3_k127_2476221_4 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 421.0
PJD3_k127_2476221_5 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate K00756 GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009032,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0044424,GO:0044444,GO:0044464 2.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 420.0
PJD3_k127_2476221_6 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 426.0
PJD3_k127_2476221_7 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 366.0
PJD3_k127_2476221_8 TIGRFAM peptidase T-like protein K01258 - 3.4.11.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 323.0
PJD3_k127_2476221_9 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 323.0
PJD3_k127_2510054_0 Dehydratase family K01687 - 4.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 582.0
PJD3_k127_2510054_1 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007242 330.0
PJD3_k127_2510054_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000097 256.0
PJD3_k127_2510054_3 COG0346 Lactoylglutathione lyase and related lyases K07032 - - 0.00000000000000000000000000000000000000000000000000000001338 206.0
PJD3_k127_2510054_4 KR domain - - - 0.000000000000000000000000000000000000000000006474 173.0
PJD3_k127_2510054_5 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000003265 142.0
PJD3_k127_2510054_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000145 120.0
PJD3_k127_2526869_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 632.0
PJD3_k127_2526869_1 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533 541.0
PJD3_k127_2526869_2 Spermine/spermidine synthase domain - - - 0.00000000000000000000000008257 110.0
PJD3_k127_2536104_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 6.302e-258 810.0
PJD3_k127_2536104_1 lytic transglycosylase K08309 - - 0.0000000000000000000000000000000000402 143.0
PJD3_k127_2536104_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032552,GO:0032553,GO:0032554,GO:0032557,GO:0032558,GO:0032564,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000005111 117.0
PJD3_k127_2536104_3 O-Antigen ligase - - - 0.00000000000001093 87.0
PJD3_k127_2536104_4 Tetratricopeptide repeat - GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0008022,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0051087 - 0.000001084 61.0
PJD3_k127_2541655_0 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001981 407.0
PJD3_k127_2541655_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005455 260.0
PJD3_k127_2541655_2 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000002009 237.0
PJD3_k127_2541655_3 DNA ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000000000000000000000000005681 228.0
PJD3_k127_2541655_4 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005216,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015075,GO:0015267,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022838,GO:0022857,GO:0030104,GO:0031224,GO:0031226,GO:0032535,GO:0034220,GO:0042592,GO:0042802,GO:0044425,GO:0044459,GO:0044464,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066 - 0.000000000000000000000000000000000000000000000000000000009212 202.0
PJD3_k127_2541655_5 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000000000000000002591 221.0
PJD3_k127_2541655_7 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E K07025 - - 0.0000000000000000000000000000000000006837 147.0
PJD3_k127_2541655_8 COG0668 Small-conductance mechanosensitive channel K16052 - - 0.000000000000000000000000000000009467 140.0
PJD3_k127_2561052_0 aldehyde oxidase and xanthine dehydrogenase a b hammerhead K00087 - 1.17.1.4 0.0 1266.0
PJD3_k127_2561052_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 7.607e-208 658.0
PJD3_k127_2561052_10 Involved in chromosome partitioning - - - 0.00000000000000000006075 103.0
PJD3_k127_2561052_11 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.000001135 61.0
PJD3_k127_2561052_2 transporter, DctM subunit K11690 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 510.0
PJD3_k127_2561052_3 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 384.0
PJD3_k127_2561052_4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 334.0
PJD3_k127_2561052_5 PFAM Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 301.0
PJD3_k127_2561052_6 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001114 287.0
PJD3_k127_2561052_7 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS-like protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001611 267.0
PJD3_k127_2561052_8 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000007636 256.0
PJD3_k127_2561052_9 PFAM Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.0000000000000000000000000133 118.0
PJD3_k127_2584973_0 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000000000000000000000000000000000000002165 160.0
PJD3_k127_2584973_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000003675 161.0
PJD3_k127_2584973_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000005695 70.0
PJD3_k127_2584973_3 Glycosyltransferase family 87 - - - 0.0000002698 61.0
PJD3_k127_262319_0 COG0277 FAD FMN-containing dehydrogenases K00803 - 2.5.1.26 4.008e-219 687.0
PJD3_k127_262319_1 FGGY family of carbohydrate kinases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007677 591.0
PJD3_k127_262319_2 PFAM short-chain dehydrogenase reductase SDR K00065 - 1.1.1.127 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004437 416.0
PJD3_k127_262319_3 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007583 333.0
PJD3_k127_2634932_0 Aminotransferase K00812 - 2.6.1.1 5.666e-203 639.0
PJD3_k127_2634932_1 fructose-bisphosphate aldolase activity K01624 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 523.0
PJD3_k127_2634932_10 NADH flavin oxidoreductase NADH oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000009428 249.0
PJD3_k127_2634932_11 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000000000000000000000000000003371 228.0
PJD3_k127_2634932_12 Protein of unknown function DUF45 K07043 - - 0.0000000000000000000000000000000000000000000000000000000000007417 219.0
PJD3_k127_2634932_13 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000002195 209.0
PJD3_k127_2634932_14 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000000000002501 184.0
PJD3_k127_2634932_15 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.33 0.000000000000000000000000000000000000000000004014 177.0
PJD3_k127_2634932_16 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000006114 182.0
PJD3_k127_2634932_17 Belongs to the P(II) protein family K04751 GO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772 - 0.0000000000000000000000000000000000000000001823 162.0
PJD3_k127_2634932_18 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000001504 148.0
PJD3_k127_2634932_19 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000009077 135.0
PJD3_k127_2634932_2 PFAM FAD linked oxidase domain protein K00102,K00104 - 1.1.2.4,1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 522.0
PJD3_k127_2634932_20 PFAM Class I peptide chain release factor K15034 - - 0.0000000000000000000000000000309 125.0
PJD3_k127_2634932_21 - - - - 0.00000000000000000000000000005132 127.0
PJD3_k127_2634932_22 EamA-like transporter family - - - 0.0000000000000005207 89.0
PJD3_k127_2634932_23 conserved protein, contains double-stranded beta-helix domain - - - 0.0000000000001983 79.0
PJD3_k127_2634932_24 Domain of unknown function (DUF5069) - - - 0.00000000004445 66.0
PJD3_k127_2634932_25 - - - - 0.00000000148 63.0
PJD3_k127_2634932_26 Domain of unknown function (DUF4388) - - - 0.00000001492 64.0
PJD3_k127_2634932_3 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 489.0
PJD3_k127_2634932_4 membrane protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007998 323.0
PJD3_k127_2634932_5 ADP-ribosylglycohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005071 324.0
PJD3_k127_2634932_6 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 312.0
PJD3_k127_2634932_7 4Fe-4S dicluster domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000647 306.0
PJD3_k127_2634932_8 Ion channel K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004215 284.0
PJD3_k127_2634932_9 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002422 259.0
PJD3_k127_2636997_0 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 426.0
PJD3_k127_2636997_1 acyl-CoA dehydrogenase K00248,K11410 GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0004085,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016491,GO:0016627,GO:0017076,GO:0019395,GO:0019605,GO:0019626,GO:0019752,GO:0022607,GO:0030258,GO:0030554,GO:0031090,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033539,GO:0033993,GO:0034440,GO:0036094,GO:0042221,GO:0042594,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046359,GO:0046395,GO:0046459,GO:0048037,GO:0048545,GO:0050660,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051384,GO:0052890,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681 1.3.8.1,1.3.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 409.0
PJD3_k127_2636997_2 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 357.0
PJD3_k127_2636997_3 Pyruvate ferredoxin/flavodoxin oxidoreductase - - - 0.00000000000000000000000000000000000000000000000005785 183.0
PJD3_k127_2657585_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 2.186e-238 755.0
PJD3_k127_2657585_1 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.0000000000000000000000000000000000000000000000000005001 205.0
PJD3_k127_2657585_2 Staygreen protein K22013 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009536,GO:0009579,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010271,GO:0015994,GO:0015996,GO:0016020,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031976,GO:0031984,GO:0033013,GO:0033015,GO:0034357,GO:0034641,GO:0042440,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044270,GO:0044422,GO:0044424,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046149,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051187,GO:0051193,GO:0051195,GO:0055035,GO:0065007,GO:0071704,GO:0090056,GO:1901360,GO:1901361,GO:1901401,GO:1901402,GO:1901404,GO:1901405,GO:1901564,GO:1901565,GO:1901575,GO:1903647 4.99.1.10 0.00000000000000000000000000000004779 131.0
PJD3_k127_2657585_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000000000000001736 108.0
PJD3_k127_2657585_4 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 0.00000000000000007621 83.0
PJD3_k127_2657585_5 PFAM ThiamineS - - - 0.0001887 52.0
PJD3_k127_2669160_0 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K07540,K18427 - 2.3.1.54,4.1.1.83,4.1.99.11 1.859e-225 724.0
PJD3_k127_2669160_1 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005424 318.0
PJD3_k127_2669160_2 glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001191 306.0
PJD3_k127_2669160_3 Arabinose efflux permease family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003314 274.0
PJD3_k127_2696105_0 TIGRFAM oligopeptide dipeptide ABC transporter, ATPase subunit K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006388 595.0
PJD3_k127_2696105_1 Extracellular solute-binding protein, family 5 K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005357 466.0
PJD3_k127_2696105_2 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005233 364.0
PJD3_k127_2696105_3 ABC-type dipeptide oligopeptide nickel transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 324.0
PJD3_k127_2696105_4 ABC-type dipeptide oligopeptide nickel transport K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 313.0
PJD3_k127_2696105_5 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007252 303.0
PJD3_k127_2696105_6 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term K00441 - 1.12.98.1 0.00000000000000000000000000000000000000000000000000007322 204.0
PJD3_k127_2696105_7 Bacterial regulatory proteins, tetR family - - - 0.00006246 54.0
PJD3_k127_2742262_0 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 7.771e-244 770.0
PJD3_k127_2742262_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 394.0
PJD3_k127_2742262_2 membrane protein terC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 391.0
PJD3_k127_2742262_3 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 371.0
PJD3_k127_2742262_4 Exporter of polyketide antibiotics K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 339.0
PJD3_k127_2742262_5 Domain of unknown function (DUF427) - - - 0.0000000000000000000000000000000000000000000000000000000000000003535 224.0
PJD3_k127_2742262_6 nodulation - - - 0.0000000000000000000000000000000000000000000000000000000007173 217.0
PJD3_k127_2742262_7 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000002349 213.0
PJD3_k127_2742262_8 PFAM Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000004299 134.0
PJD3_k127_2742262_9 Uroporphyrinogen decarboxylase K14080 - 2.1.1.246 0.00000000001272 72.0
PJD3_k127_2756174_0 Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6- dimethylbenzimidazole (DMB) K00768 - 2.4.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005326 362.0
PJD3_k127_2756174_1 NOG31153 non supervised orthologous group - - - 0.0000000000000000000000000000000000000000000000000000000000000002081 232.0
PJD3_k127_2756174_2 ABC transporter K02049 - - 0.000000000000000000000000000000000000000000000000003311 196.0
PJD3_k127_2756174_3 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000001271 176.0
PJD3_k127_2756174_4 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000009895 156.0
PJD3_k127_2756174_5 ABC transporter substrate-binding protein - - - 0.00000000000000000000000000000001983 145.0
PJD3_k127_2756174_6 EamA-like transporter family - - - 0.00000000000000000002174 103.0
PJD3_k127_2756174_7 Regulatory protein ArsR - - - 0.000000000004641 72.0
PJD3_k127_2765829_0 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 417.0
PJD3_k127_2765829_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001388 270.0
PJD3_k127_2765829_2 TIGRFAM precorrin-3B C17-methyltransferase K05934,K21479 - 2.1.1.131,2.1.1.272 0.00000000000000000000000000000000000000000000000000000000000000000000000000006944 279.0
PJD3_k127_2765829_3 Belongs to the UPF0284 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005937 252.0
PJD3_k127_2765829_4 CbiG protein K02189 - 3.7.1.12 0.00000000000000001864 87.0
PJD3_k127_2778346_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1139.0
PJD3_k127_2778346_1 Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O K05601 - 1.7.99.1 3.495e-234 737.0
PJD3_k127_2778346_10 PFAM 4Fe-4S ferredoxin iron-sulfur binding - - - 0.00006038 51.0
PJD3_k127_2778346_2 Belongs to the DNA photolyase family K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002947 488.0
PJD3_k127_2778346_3 permease K06901 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 423.0
PJD3_k127_2778346_4 PFAM ABC transporter related K01990,K16907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008042 337.0
PJD3_k127_2778346_5 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000009297 224.0
PJD3_k127_2778346_6 PFAM ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000003101 213.0
PJD3_k127_2778346_7 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000003105 188.0
PJD3_k127_2778346_8 belongs to the sigma-70 factor family, ECF subfamily K03088 GO:0001101,GO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009410,GO:0009415,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0010035,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042221,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 - 0.000000000000000000000003618 111.0
PJD3_k127_2778346_9 Dodecin K09165 - - 0.000000000000000000000006778 102.0
PJD3_k127_2792992_0 C-terminal, D2-small domain, of ClpB protein K03696 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0008150,GO:0009987,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030312,GO:0040007,GO:0042802,GO:0042803,GO:0044183,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0071944 - 0.0 1080.0
PJD3_k127_2792992_1 PFAM ABC transporter K06020 - 3.6.3.25 6.692e-259 809.0
PJD3_k127_2792992_10 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001262 280.0
PJD3_k127_2792992_11 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004705 284.0
PJD3_k127_2792992_12 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000001885 253.0
PJD3_k127_2792992_13 Sigma-70 region 2 K03091 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001034 247.0
PJD3_k127_2792992_14 CarD-like/TRCF domain K07736 - - 0.0000000000000000000000000000000000000000000000000000000000001526 217.0
PJD3_k127_2792992_15 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000009758 216.0
PJD3_k127_2792992_16 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000009335 194.0
PJD3_k127_2792992_17 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000002563 187.0
PJD3_k127_2792992_18 cation diffusion facilitator family transporter - - - 0.000000000000000000000000000000000000000000000009352 189.0
PJD3_k127_2792992_19 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000000000000000000002438 175.0
PJD3_k127_2792992_2 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004302 512.0
PJD3_k127_2792992_20 Catalyzes the specific phosphorylation of arginine residues in proteins K19405 - 2.7.14.1 0.00000000000000000000000000000000000000000002993 175.0
PJD3_k127_2792992_21 PFAM 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950,K13940 - 2.7.6.3,4.1.2.25 0.000000000000000000000000000000000000002225 154.0
PJD3_k127_2792992_22 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 GO:0003674,GO:0003824,GO:0016740,GO:0016772,GO:0016779,GO:0050518,GO:0070567 2.7.7.60 0.00000000000000000000000000000000000004067 153.0
PJD3_k127_2792992_23 Dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.00000000000000000000000002156 113.0
PJD3_k127_2792992_24 GTP cyclohydrolase K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000006456 102.0
PJD3_k127_2792992_25 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.00000000000000000000511 100.0
PJD3_k127_2792992_26 YacP-like NYN domain K06962 - - 0.00000001185 64.0
PJD3_k127_2792992_27 oxidoreductase activity - - - 0.0003269 51.0
PJD3_k127_2792992_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004812 457.0
PJD3_k127_2792992_4 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009128 443.0
PJD3_k127_2792992_5 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 447.0
PJD3_k127_2792992_6 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 433.0
PJD3_k127_2792992_7 DNA integrity scanning protein DisA K07067 - 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003524 375.0
PJD3_k127_2792992_8 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 358.0
PJD3_k127_2792992_9 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796,K13941 - 2.5.1.15,2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 349.0
PJD3_k127_2827392_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 396.0
PJD3_k127_2827392_1 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 349.0
PJD3_k127_2827392_2 SMART Elongator protein 3 MiaB NifB K01012,K16180 - 2.8.1.6,5.4.99.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 307.0
PJD3_k127_2827392_3 TIGRFAM pyrrolysine biosynthesis protein PylC K16181 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001897 280.0
PJD3_k127_2827392_4 Acts probably as a methyl group carrier between MttB and either MtbA or MtaA K14084 - - 0.00000000000000000000000000000000000000000000000000000000000001841 221.0
PJD3_k127_2827392_5 TIGRFAM pyrrolysine biosynthesis protein PylD K16182 - - 0.000000000000000000000000000000000000000000000004766 185.0
PJD3_k127_2827392_6 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000001908 145.0
PJD3_k127_2846585_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 3.694e-258 825.0
PJD3_k127_2846585_1 Glycine D-amino acid oxidases (deaminating) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004749 525.0
PJD3_k127_2846585_2 TIGRFAM daunorubicin resistance ABC transporter ATPase subunit K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 323.0
PJD3_k127_2846585_3 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003074 278.0
PJD3_k127_2846585_4 Abc-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000007094 198.0
PJD3_k127_2846585_5 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000002482 184.0
PJD3_k127_2846585_6 PFAM regulatory protein, ArsR K03892 - - 0.00000000000000000000000000004849 121.0
PJD3_k127_2846585_7 Protein of unknown function (DUF861) K06995 - - 0.00000000000000000000005913 104.0
PJD3_k127_2846585_8 O-antigen polymerase K18814 - - 0.00000002845 67.0
PJD3_k127_2906368_0 AAA domain K02232 - 6.3.5.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 445.0
PJD3_k127_2906368_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 355.0
PJD3_k127_2906368_10 Precorrin-6Y C5,15-methyltransferase (Decarboxylating), CbiT subunit K00595,K02191 - 2.1.1.132,2.1.1.196 0.0000000000000000000000000000000000000000000000000001238 206.0
PJD3_k127_2906368_11 PFAM Precorrin-8X methylmutase K06042 - 5.4.99.60,5.4.99.61 0.00000000000000000000000000000000000000000000006959 186.0
PJD3_k127_2906368_12 cobalbumin biosynthesis protein K02231 - 2.7.1.156,2.7.7.62 0.0000000000000000000000000000000000000000003852 168.0
PJD3_k127_2906368_13 Stage II sporulation protein - GO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464 - 0.00000000000000000000000000000000000000302 169.0
PJD3_k127_2906368_14 Putative cell wall binding repeat 2 - - - 0.000000000000000000000000000000000000007652 163.0
PJD3_k127_2906368_15 PFAM Tetrapyrrole (Corrin Porphyrin) Methylases K03394 - 2.1.1.130,2.1.1.151 0.000000000000000000000000000000000001893 151.0
PJD3_k127_2906368_16 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000001378 149.0
PJD3_k127_2906368_17 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.000000000000000000000000000000003335 143.0
PJD3_k127_2906368_18 protein with SCP PR1 domains - - - 0.000000000000000000000000000000003544 145.0
PJD3_k127_2906368_19 Belongs to the peptidase S8 family K13274,K14645 - - 0.000000000000000000000000000007386 137.0
PJD3_k127_2906368_2 Protein of unknown function (DUF1015) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 331.0
PJD3_k127_2906368_20 self proteolysis K01181,K02027,K17315,K17318 - 3.2.1.8 0.0000000000002858 83.0
PJD3_k127_2906368_21 sporulation protein K06381 - - 0.0000001372 65.0
PJD3_k127_2906368_22 amine dehydrogenase activity - - - 0.000001566 61.0
PJD3_k127_2906368_23 NlpC/P60 family K21471,K21473 - - 0.000005005 59.0
PJD3_k127_2906368_3 YmdB-like protein K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002712 310.0
PJD3_k127_2906368_4 Precorrin-4 C(11)-methyltransferase K05936 - 2.1.1.133,2.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009564 291.0
PJD3_k127_2906368_5 Protein of unknown function (DUF554) K07150 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009786 261.0
PJD3_k127_2906368_6 Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A K02188 - 2.1.1.195 0.0000000000000000000000000000000000000000000000000000000000000000000000001286 262.0
PJD3_k127_2906368_7 PFAM Aminotransferase class I and II K04720 - 4.1.1.81 0.00000000000000000000000000000000000000000000000000000000002981 227.0
PJD3_k127_2906368_8 CobD/Cbib protein K02227 - 6.3.1.10 0.00000000000000000000000000000000000000000000000000000002698 209.0
PJD3_k127_2906368_9 cell wall binding repeat 2 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000009607 215.0
PJD3_k127_2908082_0 PFAM PEGA domain - - - 0.0000000000000000000000000000000000000000000000000000000001852 219.0
PJD3_k127_2908082_1 domain protein - - - 0.00000000000000000000000000000000000000001607 167.0
PJD3_k127_2908082_2 diguanylate cyclase - - - 0.0000000000000000000000000000000000009205 144.0
PJD3_k127_2917197_0 NHL repeat - - - 0.0000000000000000000000000000907 131.0
PJD3_k127_2917197_1 - - - - 0.000000000000004465 89.0
PJD3_k127_2917197_2 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000007749 61.0
PJD3_k127_2943816_0 PFAM Uncharacterised protein family UPF0182 K09118 - - 1.317e-227 734.0
PJD3_k127_2943816_1 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000007826 230.0
PJD3_k127_2943816_2 iron dependent repressor K03709 - - 0.00000000000000000000000000000000000000000000000002772 188.0
PJD3_k127_2943816_3 Thioredoxin K03671 - - 0.000000000000000000000000000003143 124.0
PJD3_k127_2943816_4 alkyl hydroperoxide reductase activity - - - 0.000000000000000000000000000004483 136.0
PJD3_k127_2943816_5 Protein of unknown function (DUF1405) - - - 0.00000000000000000000000000001972 126.0
PJD3_k127_2943816_6 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000000000000004419 106.0
PJD3_k127_2943816_7 Cytochrome C biogenesis protein K02200 - - 0.0000000000003332 78.0
PJD3_k127_2943816_8 mercury ion transmembrane transporter activity K07213 - - 0.000000000007807 69.0
PJD3_k127_2943816_9 Regulatory protein, FmdB family - - - 0.0000002518 54.0
PJD3_k127_2963135_0 RDD family - - - 0.0000000000000000000000002153 120.0
PJD3_k127_2999570_0 Belongs to the SEDS family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003532 405.0
PJD3_k127_2999570_1 PFAM penicillin-binding protein transpeptidase K05364 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 368.0
PJD3_k127_2999570_2 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000000000000001262 244.0
PJD3_k127_2999570_3 Protein of unknown function (DUF2662) - - - 0.000000000000000000000000000000000000002783 161.0
PJD3_k127_2999570_4 histone H2A K63-linked ubiquitination K02283 - - 0.000000000000002254 84.0
PJD3_k127_3005455_0 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004763 564.0
PJD3_k127_3005455_1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term K00441 - 1.12.98.1 0.000000000000000000000000000000000000000000000000000000005823 215.0
PJD3_k127_3045555_0 Belongs to the glutamate synthase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006313 454.0
PJD3_k127_3045555_1 L-glutamate biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005839 294.0
PJD3_k127_3045555_2 glutamate synthase - - - 0.00000000000000000000000000000000000000000000000000000000000005488 220.0
PJD3_k127_3048145_0 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008831 370.0
PJD3_k127_3048145_1 TIGRFAM iron-sulfur cluster binding protein - - - 0.000000000000000000000000000000000000000001279 164.0
PJD3_k127_3048145_2 regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000002939 147.0
PJD3_k127_3048145_3 regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000004329 149.0
PJD3_k127_3048145_4 TIGRFAM methyltransferase cognate corrinoid proteins, Methanosarcina family K00548 - 2.1.1.13 0.000000000000000000000000004171 115.0
PJD3_k127_3048145_5 Pkd domain containing protein K12567 - 2.7.11.1 0.0000000000007124 83.0
PJD3_k127_3048145_6 Transcriptional regulator, TetR Family - - - 0.0003313 51.0
PJD3_k127_3100614_0 Aldehyde ferredoxin K03738,K19515 - 1.2.7.5 2.992e-248 781.0
PJD3_k127_3100614_1 TIGRFAM glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 - 1.1.5.3 8.621e-227 737.0
PJD3_k127_3100614_10 BadF/BadG/BcrA/BcrD ATPase family K04114 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005756 395.0
PJD3_k127_3100614_11 Trimethylamine methyltransferase (MTTB) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003689 376.0
PJD3_k127_3100614_12 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003724 372.0
PJD3_k127_3100614_13 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 375.0
PJD3_k127_3100614_14 Aldo/keto reductase family K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 354.0
PJD3_k127_3100614_15 beta' subunit K01754 - 4.3.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 352.0
PJD3_k127_3100614_16 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 349.0
PJD3_k127_3100614_17 Mg2 transporter protein K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006701 343.0
PJD3_k127_3100614_18 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 347.0
PJD3_k127_3100614_19 PFAM ABC transporter related K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 333.0
PJD3_k127_3100614_2 PUA-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 548.0
PJD3_k127_3100614_20 Radical SAM superfamily K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 313.0
PJD3_k127_3100614_21 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004852 307.0
PJD3_k127_3100614_22 TIGRFAM DNA-3-methyladenine glycosylase I K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 309.0
PJD3_k127_3100614_23 Histidine kinase internal region K02478,K07704 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 295.0
PJD3_k127_3100614_24 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000122 289.0
PJD3_k127_3100614_25 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006097 274.0
PJD3_k127_3100614_26 Electron transfer flavoprotein domain K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016020,GO:0016491,GO:0022900,GO:0030312,GO:0040007,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007501 274.0
PJD3_k127_3100614_27 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000429 276.0
PJD3_k127_3100614_28 reductase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000007999 271.0
PJD3_k127_3100614_29 electron transfer flavoprotein, alpha subunit K03522,K22432 - 1.3.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000002129 278.0
PJD3_k127_3100614_3 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 543.0
PJD3_k127_3100614_30 Ornithine cyclodeaminase/mu-crystallin family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000331 264.0
PJD3_k127_3100614_31 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000003601 266.0
PJD3_k127_3100614_32 PFAM Exonuclease RNase T and DNA polymerase III K02342 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0016020,GO:0030312,GO:0032991,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0071944,GO:1902494,GO:1905347,GO:1905348,GO:1990391 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000009318 276.0
PJD3_k127_3100614_33 PFAM phosphate transporter K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001046 263.0
PJD3_k127_3100614_34 nucleic acid binding K03698 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005501 261.0
PJD3_k127_3100614_35 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000167 253.0
PJD3_k127_3100614_36 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000003586 251.0
PJD3_k127_3100614_37 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000003117 240.0
PJD3_k127_3100614_38 PFAM Diacylglycerol kinase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000006025 240.0
PJD3_k127_3100614_39 Putative nucleotidyltransferase substrate binding domain K07182 - - 0.0000000000000000000000000000000000000000000000000000000000000002182 244.0
PJD3_k127_3100614_4 conserved protein containing a ferredoxin-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 503.0
PJD3_k127_3100614_40 2Fe-2S iron-sulfur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000004529 229.0
PJD3_k127_3100614_41 Inositol monophosphatase family K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000002233 224.0
PJD3_k127_3100614_42 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000003695 217.0
PJD3_k127_3100614_43 LytTr DNA-binding domain K02477,K07705 - - 0.00000000000000000000000000000000000000000000000000000000004732 213.0
PJD3_k127_3100614_44 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000001592 201.0
PJD3_k127_3100614_45 Membrane-associated protein - - - 0.0000000000000000000000000000000000000000000000000004483 191.0
PJD3_k127_3100614_46 LytTr DNA-binding domain K02477,K07705 - - 0.000000000000000000000000000000000000000000000000001001 194.0
PJD3_k127_3100614_47 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000000000003001 196.0
PJD3_k127_3100614_48 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000006362 195.0
PJD3_k127_3100614_49 amino acid ABC transporter K02029 - - 0.00000000000000000000000000000000000000000000000002241 190.0
PJD3_k127_3100614_5 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 490.0
PJD3_k127_3100614_50 Trimethylamine methyltransferase (MTTB) - - - 0.000000000000000000000000000000000000000000000001918 177.0
PJD3_k127_3100614_51 HNH nucleases - - - 0.000000000000000000000000000000000000000000000008546 186.0
PJD3_k127_3100614_52 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000000007754 175.0
PJD3_k127_3100614_53 Phenylacetic acid degradation protein PaaY K02617 - - 0.000000000000000000000000000000000000000000002326 172.0
PJD3_k127_3100614_54 FmdE, Molybdenum formylmethanofuran dehydrogenase operon - - - 0.000000000000000000000000000000000000000003778 164.0
PJD3_k127_3100614_55 PFAM Endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000000000006413 158.0
PJD3_k127_3100614_56 Xylose isomerase-like TIM barrel - - - 0.00000000000000000000000000000000000000001553 164.0
PJD3_k127_3100614_57 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000008293 156.0
PJD3_k127_3100614_58 PFAM Nitroreductase family - - - 0.0000000000000000000000000000000001984 139.0
PJD3_k127_3100614_59 B12 binding domain - - - 0.00000000000000000000000000000002829 128.0
PJD3_k127_3100614_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 468.0
PJD3_k127_3100614_60 - - - - 0.00000000000000000000000000000009971 129.0
PJD3_k127_3100614_61 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000004147 124.0
PJD3_k127_3100614_62 FCD - - - 0.000000000000000000000000000001931 130.0
PJD3_k127_3100614_63 BetI-type transcriptional repressor, C-terminal - - - 0.00000000000000000000000893 109.0
PJD3_k127_3100614_64 LppX_LprAFG lipoprotein K14954 - - 0.00000000000000000000002294 110.0
PJD3_k127_3100614_65 response regulator receiver K07714,K10943 - - 0.00000000000000000001196 98.0
PJD3_k127_3100614_66 diguanylate cyclase - - - 0.000000000000000005428 98.0
PJD3_k127_3100614_67 Formiminotransferase-cyclodeaminase - - - 0.0000000000005041 78.0
PJD3_k127_3100614_68 LUD domain K00782 - - 0.000000000006898 74.0
PJD3_k127_3100614_69 anti-sigma regulatory factor K04757 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016989,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036094,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901265,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 2.7.11.1 0.00000000001615 72.0
PJD3_k127_3100614_7 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 439.0
PJD3_k127_3100614_70 Tfp pilus assembly protein FimV - - - 0.0000000002906 74.0
PJD3_k127_3100614_71 - - - - 0.000000001106 62.0
PJD3_k127_3100614_72 - - - - 0.00000002635 58.0
PJD3_k127_3100614_73 COG0517 FOG CBS domain - - - 0.00000006743 63.0
PJD3_k127_3100614_74 Peptidase family M28 - - - 0.000002278 61.0
PJD3_k127_3100614_75 Protein of unknown function DUF47 K07220 - - 0.00009145 53.0
PJD3_k127_3100614_8 MgsA AAA+ ATPase C terminal K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 418.0
PJD3_k127_3100614_9 Threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005029 406.0
PJD3_k127_3125435_0 CO dehydrogenase K07321 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 288.0
PJD3_k127_3125435_1 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001236 254.0
PJD3_k127_3125435_2 Putative pyruvate format-lyase activating enzyme (DUF1786) - - - 0.00000000000000000000000000000000000000000000000000000000000000004815 235.0
PJD3_k127_3125435_3 Hexapeptide repeat of succinyl-transferase - - - 0.0000000000000000000000000000000000000000000000000003192 190.0
PJD3_k127_3125435_4 Cytochrome C biogenesis protein transmembrane region K06196 - - 0.00000000000000000000000000000000000000000000003204 178.0
PJD3_k127_3125435_5 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000000000000000000000000007012 162.0
PJD3_k127_3125435_6 Domain of unknown function (DUF4349) - - - 0.00000000000000000000006264 111.0
PJD3_k127_3125435_7 heat shock protein binding - - - 0.000000000000000000002122 108.0
PJD3_k127_3125435_8 Periplasmic protein thiol disulfide oxidoreductase, DsbE subfamily - - - 0.00000000000000000004784 92.0
PJD3_k127_3125435_9 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0002482 51.0
PJD3_k127_3136114_0 PFAM Radical SAM domain protein K22227 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002698 457.0
PJD3_k127_3136114_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005707 434.0
PJD3_k127_3136114_2 Belongs to the precorrin methyltransferase family K13542 - 2.1.1.107,4.2.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007281 424.0
PJD3_k127_3136114_3 NLP P60 protein K21471 - - 0.000000000000000000000000000000000001259 154.0
PJD3_k127_3136114_4 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.00000000000000000000008799 107.0
PJD3_k127_3136114_5 SMART Nucleotide binding protein, PINc K07175 - - 0.0000000000000001626 91.0
PJD3_k127_3136114_6 Sulfotransferase family - - - 0.00000156 60.0
PJD3_k127_3152967_0 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000000000000000000000000000000000000000008846 167.0
PJD3_k127_3152967_1 PFAM OsmC family protein - - - 0.0000000000000000000000001256 114.0
PJD3_k127_3152967_2 Cysteine desulfurase - - - 0.000000000001104 74.0
PJD3_k127_3152967_3 PFAM Amino acid-binding ACT - - - 0.00000000007568 68.0
PJD3_k127_3152967_5 Antibiotic biosynthesis monooxygenase - - - 0.00001286 48.0
PJD3_k127_3173923_0 Molybdopterin oxidoreductase Fe4S4 domain K00123,K22341 - 1.17.1.11,1.17.1.9 8.574e-269 870.0
PJD3_k127_3173923_1 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 4.558e-199 636.0
PJD3_k127_3173923_2 Bacterial regulatory proteins, luxR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007102 260.0
PJD3_k127_3173923_3 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.00000000000000000000000000000000001823 148.0
PJD3_k127_3173923_4 Interferon-induced transmembrane protein - - - 0.000000000000000000002428 100.0
PJD3_k127_3173923_5 Protein of unknown function (DUF2752) - - - 0.0000000000000354 83.0
PJD3_k127_3173923_6 cheY-homologous receiver domain - - - 0.0000000001291 68.0
PJD3_k127_3173923_7 GAF domain - - - 0.00000002146 64.0
PJD3_k127_3173923_8 Phospholipase_D-nuclease N-terminal - - - 0.0001335 49.0
PJD3_k127_3286887_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 2.573e-306 969.0
PJD3_k127_3286887_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 8.991e-220 690.0
PJD3_k127_3286887_10 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000000000000000000000000000000000000000002407 207.0
PJD3_k127_3286887_11 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.00000000000000000000000000000000000000000000000000008195 208.0
PJD3_k127_3286887_12 Sigma 54 modulation protein / S30EA ribosomal protein K05808 - - 0.0000000000000000000000000000000000000000000002692 186.0
PJD3_k127_3286887_13 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000004708 109.0
PJD3_k127_3286887_14 ComF family K02242 - - 0.00000000000000000007225 100.0
PJD3_k127_3286887_15 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00001391 55.0
PJD3_k127_3286887_2 adenosylhomocysteinase activity K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 3.265e-196 618.0
PJD3_k127_3286887_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005271 475.0
PJD3_k127_3286887_4 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 422.0
PJD3_k127_3286887_5 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 405.0
PJD3_k127_3286887_6 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0019509,GO:0019752,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046523,GO:0071265,GO:0071267,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 395.0
PJD3_k127_3286887_7 Nucleotidyl transferase K00966 - 2.7.7.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003708 325.0
PJD3_k127_3286887_8 cell division ATP-binding protein FtsE K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 304.0
PJD3_k127_3286887_9 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001921 263.0
PJD3_k127_3320383_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 4.422e-234 747.0
PJD3_k127_3320383_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000412 592.0
PJD3_k127_3320383_10 Anthranilate synthase component I K01657,K01665,K03342,K13950 - 2.6.1.85,4.1.3.27,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006099 362.0
PJD3_k127_3320383_11 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 293.0
PJD3_k127_3320383_12 PFAM SAICAR synthetase K01923 - 6.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006479 282.0
PJD3_k127_3320383_13 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001109 278.0
PJD3_k127_3320383_14 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000008147 207.0
PJD3_k127_3320383_15 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000001016 164.0
PJD3_k127_3320383_16 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000000000002539 155.0
PJD3_k127_3320383_17 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000002111 145.0
PJD3_k127_3320383_18 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000001015 96.0
PJD3_k127_3320383_19 Amino-transferase class IV K00824 - 2.6.1.21 0.000000000000000000004102 104.0
PJD3_k127_3320383_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 545.0
PJD3_k127_3320383_20 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000001353 91.0
PJD3_k127_3320383_21 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000002714 93.0
PJD3_k127_3320383_22 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000005499 89.0
PJD3_k127_3320383_23 - - - - 0.0000000634 58.0
PJD3_k127_3320383_24 - - - - 0.000355 46.0
PJD3_k127_3320383_3 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 GO:0003674,GO:0003824,GO:0004018,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046033,GO:0046390,GO:0046483,GO:0055086,GO:0070626,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002174 522.0
PJD3_k127_3320383_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 493.0
PJD3_k127_3320383_5 PFAM FAD dependent oxidoreductase K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005322 496.0
PJD3_k127_3320383_6 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 471.0
PJD3_k127_3320383_7 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 436.0
PJD3_k127_3320383_8 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008899 430.0
PJD3_k127_3320383_9 AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 357.0
PJD3_k127_3338593_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 507.0
PJD3_k127_3338593_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009992 411.0
PJD3_k127_3338593_10 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000000000555 132.0
PJD3_k127_3338593_12 Glycosyl transferase 4-like domain - - - 0.000000003809 62.0
PJD3_k127_3338593_13 Polymer-forming cytoskeletal - - - 0.000000032 66.0
PJD3_k127_3338593_14 Domain of unknown function (DUF4330) - - - 0.000001632 57.0
PJD3_k127_3338593_15 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0001166 53.0
PJD3_k127_3338593_2 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 405.0
PJD3_k127_3338593_3 Cell wall formation K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002823 281.0
PJD3_k127_3338593_4 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008987 280.0
PJD3_k127_3338593_5 PFAM O-antigen polymerase K18814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003142 281.0
PJD3_k127_3338593_6 Amidohydrolase K07045 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002106 261.0
PJD3_k127_3338593_7 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 - - 0.000000000000000000000000000000000000000000000000000000000003456 221.0
PJD3_k127_3338593_8 Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid K05946 - 2.4.1.187 0.0000000000000000000000000000000000000000000000000000003098 203.0
PJD3_k127_3338593_9 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000002567 175.0
PJD3_k127_3343318_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 318.0
PJD3_k127_3343318_1 PFAM Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000001237 235.0
PJD3_k127_3343318_2 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000000000000005794 211.0
PJD3_k127_3343318_3 - - - - 0.00000000000001004 86.0
PJD3_k127_3343318_4 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576 2.7.8.41,2.7.8.5 0.00000000000002333 81.0
PJD3_k127_3343318_5 nuclear chromosome segregation K21471 - - 0.000000001416 68.0
PJD3_k127_3375778_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000006174 191.0
PJD3_k127_3375778_1 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000173 143.0
PJD3_k127_3386591_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.225e-281 893.0
PJD3_k127_3386591_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 439.0
PJD3_k127_3386591_10 Helix-turn-helix domain, rpiR family - - - 0.0000000000000000000000000000000000000000000005346 177.0
PJD3_k127_3386591_11 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.000000000000000000000000000000000000000164 156.0
PJD3_k127_3386591_12 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000004239 152.0
PJD3_k127_3386591_13 Tetratricopeptide repeat - - - 0.000000000000000000002481 97.0
PJD3_k127_3386591_14 Metallo-beta-lactamase domain protein - - - 0.000000000000000000003129 97.0
PJD3_k127_3386591_15 - - - - 0.00000000000000004439 86.0
PJD3_k127_3386591_16 Preprotein translocase, YajC subunit K03210 - - 0.00000000000000006178 85.0
PJD3_k127_3386591_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 416.0
PJD3_k127_3386591_3 DHH family K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 430.0
PJD3_k127_3386591_4 ABC transporter K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 370.0
PJD3_k127_3386591_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000398 348.0
PJD3_k127_3386591_6 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005298 319.0
PJD3_k127_3386591_7 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061 314.0
PJD3_k127_3386591_8 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.000000000000000000000000000000000000000000000000000000000000000001044 239.0
PJD3_k127_3386591_9 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000000000000000006918 187.0
PJD3_k127_3452799_0 GTP-binding protein TypA K06207 - - 1.239e-281 882.0
PJD3_k127_3452799_1 SMART Resolvase RNase H domain protein fold K06959 - - 6.814e-262 829.0
PJD3_k127_3452799_10 glycolate biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000006747 193.0
PJD3_k127_3452799_11 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.0000000000000000000000000004025 121.0
PJD3_k127_3452799_12 Psort location Cytoplasmic, score - - - 0.0009671 50.0
PJD3_k127_3452799_2 Drug exporters of the RND superfamily K06994,K07003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 486.0
PJD3_k127_3452799_3 Belongs to the FPG family K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004463 394.0
PJD3_k127_3452799_4 Aminotransferase class I and II K14155 - 4.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009471 406.0
PJD3_k127_3452799_5 Orn/Lys/Arg decarboxylase, C-terminal domain K01582 - 4.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 394.0
PJD3_k127_3452799_6 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006326 332.0
PJD3_k127_3452799_7 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004284 287.0
PJD3_k127_3452799_8 2-haloalkanoic acid dehalogenase K01560,K07025 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000004978 212.0
PJD3_k127_3452799_9 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III - - - 0.000000000000000000000000000000000000000000000000000006985 202.0
PJD3_k127_3517588_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1089.0
PJD3_k127_3517588_1 ABC transporter, transmembrane region K06147 - - 8.712e-257 834.0
PJD3_k127_3517588_10 PHP-associated - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 342.0
PJD3_k127_3517588_11 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007398 332.0
PJD3_k127_3517588_12 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001635 293.0
PJD3_k127_3517588_13 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000001263 222.0
PJD3_k127_3517588_14 Uracil DNA glycosylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000002099 211.0
PJD3_k127_3517588_15 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000001635 208.0
PJD3_k127_3517588_16 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000004571 167.0
PJD3_k127_3517588_17 Belongs to the UPF0145 family - - - 0.0000000000000000000000000000000000000005495 150.0
PJD3_k127_3517588_18 Predicted membrane protein (DUF2177) - - - 0.000000000000000000000000000000000004397 141.0
PJD3_k127_3517588_19 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000002427 142.0
PJD3_k127_3517588_2 ABC transporter, transmembrane region K06147 - - 1.249e-222 713.0
PJD3_k127_3517588_20 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000000000000001705 126.0
PJD3_k127_3517588_21 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000003022 81.0
PJD3_k127_3517588_22 ubiE/COQ5 methyltransferase family - - - 0.0000000000000006517 89.0
PJD3_k127_3517588_23 Putative zinc-finger - - - 0.000000000000002597 83.0
PJD3_k127_3517588_25 Transcriptional regulator, MarR family - - - 0.0000000000001022 78.0
PJD3_k127_3517588_26 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.00000002548 62.0
PJD3_k127_3517588_3 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 588.0
PJD3_k127_3517588_4 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 540.0
PJD3_k127_3517588_5 glycosyl transferase, family 51 K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006463 500.0
PJD3_k127_3517588_6 PFAM Aldo keto reductase K07079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 425.0
PJD3_k127_3517588_7 Sodium calcium exchanger K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004215 403.0
PJD3_k127_3517588_8 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 394.0
PJD3_k127_3517588_9 drug transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 372.0
PJD3_k127_3541863_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 1.033e-225 708.0
PJD3_k127_3541863_1 Belongs to the peptidase S8 family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000001661 216.0
PJD3_k127_3541863_2 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.0000000000000000000000000000000000000000000000000009869 190.0
PJD3_k127_3595124_0 elongation factor G K02355 - - 1.408e-221 707.0
PJD3_k127_3595124_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 6.925e-195 615.0
PJD3_k127_3595124_10 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000002499 218.0
PJD3_k127_3595124_11 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - 0.0000000000000000000000000000000000000000000000000000000285 200.0
PJD3_k127_3595124_12 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000001152 198.0
PJD3_k127_3595124_13 Uncharacterised protein, DegV family COG1307 - - - 0.00000000000000000000000000000000000000000000000000000104 203.0
PJD3_k127_3595124_14 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000003887 196.0
PJD3_k127_3595124_15 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000001667 157.0
PJD3_k127_3595124_16 Conserved hypothetical protein 95 - - - 0.00000000000000000000000000000000000009296 151.0
PJD3_k127_3595124_17 Thioesterase superfamily - - - 0.000000000000000000000000001581 123.0
PJD3_k127_3595124_18 Asp23 family, cell envelope-related function - - - 0.000000000000000000000001709 107.0
PJD3_k127_3595124_19 Uncharacterized ACR, COG1399 K07040 GO:0008150,GO:0040007 - 0.0000000000000000001496 95.0
PJD3_k127_3595124_2 S-adenosylmethionine synthetase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002061 549.0
PJD3_k127_3595124_20 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0003674,GO:0003735,GO:0005198 - 0.000000000000000001767 86.0
PJD3_k127_3595124_21 Domain of unknown function (DUF1858) - - - 0.00000000000000001587 86.0
PJD3_k127_3595124_22 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000425 83.0
PJD3_k127_3595124_3 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 484.0
PJD3_k127_3595124_4 helicase superfamily c-terminal domain K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 427.0
PJD3_k127_3595124_5 Dak1_2 K07030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 389.0
PJD3_k127_3595124_6 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003966 318.0
PJD3_k127_3595124_7 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000000000000000000000000000003902 238.0
PJD3_k127_3595124_8 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000006718 235.0
PJD3_k127_3595124_9 TIGRFAM riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000005212 218.0
PJD3_k127_3598093_0 Catalyzes the transfer of a methyl group from dimethylamine to the corrinoid cofactor of MtbC K16178 - 2.1.1.249 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 441.0
PJD3_k127_3598093_1 PFAM Uroporphyrinogen decarboxylase (URO-D) K01599,K14080 - 2.1.1.246,4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 383.0
PJD3_k127_3598093_2 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007905 276.0
PJD3_k127_3598093_3 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.00000000000000000000000000000002696 128.0
PJD3_k127_3598093_4 TIGRFAM pyrrolysyl-tRNA synthetase, N-terminal region - - - 0.00000000000000000000000003347 112.0
PJD3_k127_3598093_5 TIGRFAM pyrrolysine biosynthesis radical SAM protein K16180 - 5.4.99.58 0.000000000000005499 85.0
PJD3_k127_3598093_6 Acts as a methyl group carrier between MtbB and MtbA K16179 - - 0.0000000001061 62.0
PJD3_k127_3609590_0 PKD domain - - - 0.00000000000000000000000000000002811 134.0
PJD3_k127_3609590_1 Thioredoxin - - - 0.00000000000000000000000000000008641 134.0
PJD3_k127_3609590_2 Vitamin k epoxide reductase - - - 0.0001857 51.0
PJD3_k127_3612257_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 1.09e-206 672.0
PJD3_k127_3612257_1 Belongs to the ABC transporter superfamily K02052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004011 314.0
PJD3_k127_3612257_2 Iron-containing alcohol dehydrogenase K00001,K13954 - 1.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009416 284.0
PJD3_k127_3612257_3 binding-protein-dependent transport systems inner membrane component K02054 - - 0.00000000000000000000000000000000000000000000000003354 192.0
PJD3_k127_3612257_4 ABC-type spermidine putrescine transport system, permease component II K02053,K11070 - - 0.0000000000000000000000000000000000000000005053 170.0
PJD3_k127_3612257_5 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000281 172.0
PJD3_k127_3612257_6 cell wall organization - - - 0.000000000000000000000000000000385 140.0
PJD3_k127_3612257_7 helix_turn_helix, Arsenical Resistance Operon Repressor K21903 - - 0.000000000000000000003294 98.0
PJD3_k127_3612257_8 - - - - 0.00002329 54.0
PJD3_k127_3612257_9 - - - - 0.0002416 44.0
PJD3_k127_3622530_0 amino acid - - - 4.652e-216 683.0
PJD3_k127_3622530_1 Monomethylamine methyltransferase MtmB K16176 - 2.1.1.248 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 416.0
PJD3_k127_3622530_2 Monomethylamine methyltransferase MtmB K16176 - 2.1.1.248 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004878 298.0
PJD3_k127_3622530_3 B12 binding domain K14084 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001138 273.0
PJD3_k127_3622530_4 Belongs to the universal stress protein A family - - - 0.0000000004182 68.0
PJD3_k127_3622530_5 Methionine synthase B12-binding module cap domain protein K00548,K14084 - 2.1.1.13 0.000001289 53.0
PJD3_k127_3632083_0 acetyl-CoA hydrolase transferase - - - 2.537e-194 632.0
PJD3_k127_3632083_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 GO:0003674,GO:0003824,GO:0003987,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006083,GO:0006084,GO:0006085,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006473,GO:0006476,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016054,GO:0016405,GO:0016787,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017001,GO:0017144,GO:0018130,GO:0018193,GO:0018205,GO:0018394,GO:0019213,GO:0019427,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033558,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034421,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0035601,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045733,GO:0046390,GO:0046395,GO:0046483,GO:0050218,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072329,GO:0072521,GO:0072522,GO:0090407,GO:0098732,GO:0140096,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 6.2.1.1 0.000000000000000000000000000009847 118.0
PJD3_k127_3632083_2 4Fe-4S binding domain - - - 0.00000005806 58.0
PJD3_k127_3643101_0 Protein of unknown function (DUF401) K09133 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005703 313.0
PJD3_k127_3643101_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000002844 235.0
PJD3_k127_3643101_2 PFAM Metal-dependent phosphohydrolase, HD - - - 0.000000000000000000000000000000000000000000000000000000001409 228.0
PJD3_k127_3643101_3 Drug exporters of the RND superfamily K06994,K07003 - - 0.000000000000000000000000000000000000000309 153.0
PJD3_k127_3645012_0 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000000000000000000000001586 235.0
PJD3_k127_3645012_1 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000006494 134.0
PJD3_k127_3645012_2 TIGRFAM competence protein ComEA K02237 - - 0.0000000000000000000000000003017 126.0
PJD3_k127_3645012_3 Desulfoferrodoxin, N-terminal domain - - - 0.0000000000003986 68.0
PJD3_k127_3645012_4 Binds directly to 16S ribosomal RNA K02968 - - 0.000002392 52.0
PJD3_k127_3662528_0 PFAM CoA-binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 608.0
PJD3_k127_3662528_1 Fumarase C C-terminus K01744 - 4.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 472.0
PJD3_k127_3662528_10 WYL domain K13573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000107 250.0
PJD3_k127_3662528_11 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000004306 257.0
PJD3_k127_3662528_12 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000323 265.0
PJD3_k127_3662528_13 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000005162 217.0
PJD3_k127_3662528_14 COG0508 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - - - 0.000000000000000000000000000000000000000000000000000005767 201.0
PJD3_k127_3662528_15 PFAM Capsule synthesis protein, CapA K07282 - - 0.00000000000000000000000000000000000000000000000000004362 202.0
PJD3_k127_3662528_16 WYL domain K13573 - - 0.0000000000000000000000000000000000000000000006387 183.0
PJD3_k127_3662528_17 PFAM NLP P60 protein K21471 GO:0005575,GO:0005576 - 0.00000000000000000000000000000000001662 150.0
PJD3_k127_3662528_18 SMART protein phosphatase 2C domain protein - - - 0.000000000000000000000000000000004398 148.0
PJD3_k127_3662528_19 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000004535 133.0
PJD3_k127_3662528_2 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 409.0
PJD3_k127_3662528_20 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000003925 132.0
PJD3_k127_3662528_22 PFAM Membrane protein of K08972 - - 0.000000000000000001117 96.0
PJD3_k127_3662528_23 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000001844 87.0
PJD3_k127_3662528_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 406.0
PJD3_k127_3662528_4 RNB K12573 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 423.0
PJD3_k127_3662528_5 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 411.0
PJD3_k127_3662528_6 PFAM SPFH domain Band 7 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002537 376.0
PJD3_k127_3662528_7 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 329.0
PJD3_k127_3662528_8 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004871 281.0
PJD3_k127_3662528_9 Beta-lactamase K01286 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000005571 274.0
PJD3_k127_3666434_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 1.604e-232 742.0
PJD3_k127_3666434_1 Belongs to the aldehyde dehydrogenase family K00128,K00130,K00135,K00138,K00146 - 1.2.1.16,1.2.1.20,1.2.1.3,1.2.1.39,1.2.1.79,1.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 578.0
PJD3_k127_3666434_10 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000000000000005213 154.0
PJD3_k127_3666434_11 CoA binding domain K06929 - - 0.000000000000000000000000493 111.0
PJD3_k127_3666434_12 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 - 3.1.3.12 0.000000000000004507 82.0
PJD3_k127_3666434_13 Bacterial regulatory proteins, tetR family - - - 0.00000003429 63.0
PJD3_k127_3666434_14 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000008936 64.0
PJD3_k127_3666434_2 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 557.0
PJD3_k127_3666434_3 PFAM Hemerythrin HHE cation binding domain K09155 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 446.0
PJD3_k127_3666434_4 PFAM Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001041 383.0
PJD3_k127_3666434_5 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 370.0
PJD3_k127_3666434_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004038 286.0
PJD3_k127_3666434_7 MMPL family K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001197 271.0
PJD3_k127_3666434_8 Lactoylglutathione lyase K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000002081 177.0
PJD3_k127_3666434_9 Uncharacterised protein, DegV family COG1307 - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000001272 175.0
PJD3_k127_3711823_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005738 411.0
PJD3_k127_3711823_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009208 383.0
PJD3_k127_3711823_2 Domain of unknown function (DUF2088) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005534 349.0
PJD3_k127_3711823_3 Cellulose biosynthesis protein BcsQ K03496 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 334.0
PJD3_k127_3711823_4 response regulator K07668,K07775 - - 0.000000000000000000000000000000000000000000000000000000000001947 219.0
PJD3_k127_3711823_5 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000001602 146.0
PJD3_k127_3711823_6 - - - - 0.0000000000000000000000000000002768 131.0
PJD3_k127_3711823_7 PFAM GCN5-related N-acetyltransferase - - - 0.0001477 46.0
PJD3_k127_3711823_8 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor domain - - - 0.0002409 53.0
PJD3_k127_3769563_0 PFAM ABC transporter related K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005608 482.0
PJD3_k127_3769563_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 442.0
PJD3_k127_3769563_10 alpha beta - - - 0.000000000000000000000000004223 120.0
PJD3_k127_3769563_2 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009919 409.0
PJD3_k127_3769563_3 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007428 301.0
PJD3_k127_3769563_4 acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009329 278.0
PJD3_k127_3769563_5 PFAM ABC transporter K02013 - 3.6.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000007374 259.0
PJD3_k127_3769563_6 GTP binding K09767 GO:0000049,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0009987,GO:0017076,GO:0019001,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0033554,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000008403 199.0
PJD3_k127_3769563_7 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.000000000000000000000000000000000008247 148.0
PJD3_k127_3769563_8 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.00000000000000000000000000000000734 140.0
PJD3_k127_3769563_9 heme binding K21471,K21472 - - 0.000000000000000000000000000006956 137.0
PJD3_k127_3787_0 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000002878 240.0
PJD3_k127_3787_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000002169 190.0
PJD3_k127_3787_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000003656 184.0
PJD3_k127_3787_3 - - - - 0.00000000721 66.0
PJD3_k127_3808707_0 chelatase, subunit chli K06400,K07391 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 413.0
PJD3_k127_3808707_1 RNA polymerase sigma factor K02405 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007754 349.0
PJD3_k127_3808707_2 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002318 306.0
PJD3_k127_3808707_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002448 289.0
PJD3_k127_3808707_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005015 270.0
PJD3_k127_3808707_5 Phage integrase, N-terminal SAM-like domain K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000009644 234.0
PJD3_k127_3808707_6 TIGRFAM DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000004424 224.0
PJD3_k127_3808707_7 Uncharacterised protein family UPF0102 K07460 - - 0.00000000000000000003109 95.0
PJD3_k127_3808707_8 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000006789 51.0
PJD3_k127_3928584_0 Ribonuclease E/G family K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000776 558.0
PJD3_k127_3928584_1 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000869 497.0
PJD3_k127_3928584_10 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000007041 104.0
PJD3_k127_3928584_11 Rod shape-determining protein (MreD) K03571 - - 0.00000001478 63.0
PJD3_k127_3928584_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 424.0
PJD3_k127_3928584_3 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 368.0
PJD3_k127_3928584_4 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 370.0
PJD3_k127_3928584_5 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007958 272.0
PJD3_k127_3928584_6 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000006992 213.0
PJD3_k127_3928584_7 rod shape-determining protein MreC K03570 - - 0.00000000000000000000000000000009136 132.0
PJD3_k127_3928584_8 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000001643 120.0
PJD3_k127_3928584_9 protein domain associated with - - - 0.0000000000000000000000000001172 126.0
PJD3_k127_3932283_0 nucleotide catabolic process K01081,K11751 - 3.1.3.5,3.6.1.45 9.89e-205 648.0
PJD3_k127_3932283_1 Aminotransferase class-III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113 374.0
PJD3_k127_3932283_2 PFAM Methyltransferase type 11 K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000000000000000000001709 260.0
PJD3_k127_3932283_3 DNA-binding transcription factor activity K21886,K21903 - - 0.00000000000000009703 86.0
PJD3_k127_3932283_4 EamA-like transporter family - - - 0.0000005244 56.0
PJD3_k127_3968152_0 phenylalanyl-tRNA synthetase beta subunit K01890 - 6.1.1.20 8.399e-212 685.0
PJD3_k127_3968152_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 444.0
PJD3_k127_3968152_2 TIGRFAM Potassium uptake protein TrkH K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 371.0
PJD3_k127_3968152_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 301.0
PJD3_k127_3968152_4 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001545 300.0
PJD3_k127_3968152_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.0000000000000000000000000000000000000000000000000000000000000007269 222.0
PJD3_k127_3968152_6 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000353 204.0
PJD3_k127_3968152_7 Ribosomal protein L20 K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016020,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:1990904 - 0.000000000000000000000000000000000000001377 150.0
PJD3_k127_3968152_8 tRNA rRNA methyltransferase, SpoU K03437 - - 0.0000000000000000000000000000009076 132.0
PJD3_k127_3968152_9 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000006378 60.0
PJD3_k127_3968890_0 Ferrous iron transport protein B - - - 3.865e-216 688.0
PJD3_k127_3968890_1 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 7.235e-198 629.0
PJD3_k127_3968890_2 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052,K07246 - 1.1.1.83,1.1.1.85,1.1.1.93,4.1.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 526.0
PJD3_k127_3968890_3 TipAS antibiotic-recognition domain K21744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 288.0
PJD3_k127_3968890_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002648 257.0
PJD3_k127_3968890_5 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000001095 177.0
PJD3_k127_3968890_6 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.0000000000000000000000003917 107.0
PJD3_k127_3968890_7 PFAM FeoA family protein K04758 - - 0.00000000000004693 77.0
PJD3_k127_4000819_0 peptidase activity, acting on L-amino acid peptides K20276,K21449 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002216 301.0
PJD3_k127_4000819_1 Putative Flp pilus-assembly TadE/G-like - - - 0.00000000000000000000000000000187 139.0
PJD3_k127_4000819_2 Mac 1 - - - 0.000000000000000000000000000003311 131.0
PJD3_k127_4000819_3 Lysophospholipase L1 and related esterases - GO:0006629,GO:0008150,GO:0008152,GO:0009056,GO:0016042,GO:0044238,GO:0071704,GO:1901575 - 0.000002393 58.0
PJD3_k127_4000819_4 Protein of unknown function (DUF1524) - - - 0.0002187 46.0
PJD3_k127_4005914_0 ATP-dependent DNA helicase K03657 GO:0000018,GO:0000166,GO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030312,GO:0030554,GO:0031323,GO:0031324,GO:0032392,GO:0032508,GO:0032552,GO:0032554,GO:0032558,GO:0032564,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0036094,GO:0040007,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045910,GO:0045934,GO:0046483,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 1.428e-196 638.0
PJD3_k127_4005914_1 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000499 426.0
PJD3_k127_4005914_10 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000003733 273.0
PJD3_k127_4005914_11 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000004006 260.0
PJD3_k127_4005914_12 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000003101 209.0
PJD3_k127_4005914_13 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.0000000000001022 78.0
PJD3_k127_4005914_14 transcriptional regulator, Rrf2 family - - - 0.0008282 42.0
PJD3_k127_4005914_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005356 420.0
PJD3_k127_4005914_3 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000267 404.0
PJD3_k127_4005914_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 332.0
PJD3_k127_4005914_5 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 332.0
PJD3_k127_4005914_6 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 324.0
PJD3_k127_4005914_7 PFAM PP-loop domain protein K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000904 298.0
PJD3_k127_4005914_8 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008805 287.0
PJD3_k127_4005914_9 TIGRFAM Serine O-acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000004382 270.0
PJD3_k127_4025767_0 Belongs to the CarB family K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 543.0
PJD3_k127_4025767_1 ABC transporter, transmembrane region K06147,K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002707 449.0
PJD3_k127_4025767_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.000000000000000000001263 98.0
PJD3_k127_4025767_11 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.00000000000000003246 85.0
PJD3_k127_4025767_2 ABC transporter related K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004736 445.0
PJD3_k127_4025767_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 366.0
PJD3_k127_4025767_4 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008935 348.0
PJD3_k127_4025767_5 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 293.0
PJD3_k127_4025767_6 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17723,K17828 - 1.3.1.1,1.3.1.14 0.000000000000000000000000000000000000000000000000000000000000000000008532 248.0
PJD3_k127_4025767_7 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000000000000000000014 170.0
PJD3_k127_4025767_8 Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD( K02823 - - 0.00000000000000000000000000000000004105 147.0
PJD3_k127_4025767_9 - - - - 0.000000000000000000000000007727 123.0
PJD3_k127_4039686_0 NhaP-type Na H and K H - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 529.0
PJD3_k127_4039686_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00520 - 1.16.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006045 511.0
PJD3_k127_4039686_2 ATP dependent DNA ligase domain K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000003146 258.0
PJD3_k127_4039686_3 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000000000000004738 88.0
PJD3_k127_4050250_0 Amidase, hydantoinase carbamoylase family K06016 - 3.5.1.6,3.5.1.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 420.0
PJD3_k127_4050250_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006672 390.0
PJD3_k127_4050250_2 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009951 325.0
PJD3_k127_4050250_3 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003439 309.0
PJD3_k127_4050250_4 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002956 285.0
PJD3_k127_4050250_5 Predicted membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000001785 222.0
PJD3_k127_4050250_6 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000005541 190.0
PJD3_k127_4050250_7 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000002656 179.0
PJD3_k127_4050250_8 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000001288 97.0
PJD3_k127_4050250_9 Protein conserved in bacteria - - - 0.00000000009342 69.0
PJD3_k127_4060492_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006360,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0018130,GO:0019438,GO:0030312,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 516.0
PJD3_k127_4060492_1 Catalyzes the formation of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond at the expense of ATP K05716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 435.0
PJD3_k127_4060492_2 acid phosphatase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 338.0
PJD3_k127_4060492_3 fructose-1,6-bisphosphatase K02446 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 308.0
PJD3_k127_4060492_4 PFAM peptidase S58, DmpA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003238 254.0
PJD3_k127_4060492_5 2-phosphoglycerate kinase K05715 - - 0.00000000000000000000000000000000000000000000000000000000004325 218.0
PJD3_k127_4100815_0 ethanolamine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 611.0
PJD3_k127_4100815_1 PFAM Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006576 449.0
PJD3_k127_4100815_2 - - - - 0.0000000000001415 83.0
PJD3_k127_4100815_3 Acts as a methyl group carrier between MtbB and MtbA K16179 - - 0.0000000000001908 70.0
PJD3_k127_4100815_4 Belongs to the universal stress protein A family - - - 0.00000001332 57.0
PJD3_k127_4100815_5 - - - - 0.00000003237 57.0
PJD3_k127_4100815_6 - - - - 0.00000004541 63.0
PJD3_k127_4124531_0 COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004803 337.0
PJD3_k127_4124531_1 ATPase associated with various cellular activities, AAA_5 K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005966 304.0
PJD3_k127_4124531_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002445 272.0
PJD3_k127_4124531_3 oxidoreductase activity - - - 0.00000000000000000000000000000136 128.0
PJD3_k127_4159250_0 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003139 379.0
PJD3_k127_4159250_1 Catalyzes the transfer of a methyl group from dimethylamine to the corrinoid cofactor of MtbC K16178 - 2.1.1.249 0.0000000000000000000000000000000001965 134.0
PJD3_k127_4159250_2 Trimethylamine methyltransferase (MTTB) - - - 0.000002544 52.0
PJD3_k127_4225562_0 Carbamoyl-phosphate synthetase large chain, oligomerisation K01955 - 6.3.5.5 0.0 1645.0
PJD3_k127_4225562_1 PFAM Carbamoyl-phosphate synthase L chain, ATP binding domain K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 5.183e-261 821.0
PJD3_k127_4225562_10 DSBA oxidoreductase - - - 0.00000000000000000000000000000000000001253 151.0
PJD3_k127_4225562_11 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000006455 156.0
PJD3_k127_4225562_12 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000442 112.0
PJD3_k127_4225562_13 FtsX-like permease family K02004 - - 0.00000000000000000000345 107.0
PJD3_k127_4225562_2 Belongs to the thiolase family K00626 - 2.3.1.9 4.116e-208 655.0
PJD3_k127_4225562_3 Enoyl-CoA hydratase isomerase K07539 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009259,GO:0009261,GO:0009987,GO:0016787,GO:0016822,GO:0016823,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044273,GO:0044281,GO:0044283,GO:0046434,GO:0046483,GO:0046700,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901787,GO:1901788 3.7.1.21 8.96e-198 623.0
PJD3_k127_4225562_4 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000003791 224.0
PJD3_k127_4225562_5 ABC transporter (permease) K02034 - - 0.0000000000000000000000000000000000000000000000000000000002857 228.0
PJD3_k127_4225562_6 Iron-storage protein K02217 - 1.16.3.2 0.000000000000000000000000000000000000000000000000000008192 203.0
PJD3_k127_4225562_7 Phosphatidylethanolamine-binding protein K06910 - - 0.000000000000000000000000000000000000000000000000004207 186.0
PJD3_k127_4225562_8 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components - - - 0.000000000000000000000000000000000000000002607 168.0
PJD3_k127_4225562_9 polysaccharide deacetylase K22278 - 3.5.1.104 0.0000000000000000000000000000000000000001411 172.0
PJD3_k127_4321008_0 MMPL family K06994 - - 2.486e-229 732.0
PJD3_k127_4321008_1 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 432.0
PJD3_k127_4321008_10 COGs COG0735 Fe2 Zn2 uptake regulation protein K03711,K09825 - - 0.0000000000000000000001012 104.0
PJD3_k127_4321008_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 405.0
PJD3_k127_4321008_3 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003241 292.0
PJD3_k127_4321008_4 Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import K02007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005062 255.0
PJD3_k127_4321008_5 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000518 188.0
PJD3_k127_4321008_6 PKD domain - - - 0.00000000000000000000000000000000000000000003127 183.0
PJD3_k127_4321008_7 COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters K02008 GO:0000041,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0008150,GO:0016020,GO:0016021,GO:0030001,GO:0031224,GO:0032991,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071944,GO:0072511,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000003218 161.0
PJD3_k127_4321008_8 Mac 1 - - - 0.0000000000000000000000001179 124.0
PJD3_k127_4321008_9 Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import K02009 - - 0.000000000000000000000006048 113.0
PJD3_k127_4325863_0 FAD linked oxidases, C-terminal domain - - - 0.0 1172.0
PJD3_k127_4325863_1 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.037e-298 938.0
PJD3_k127_4325863_10 PFAM OsmC family protein K09136 - - 0.0000000000000000000000000000000000000004961 154.0
PJD3_k127_4325863_11 PFAM Xylose isomerase domain protein TIM barrel - - - 0.00000000000000000000000000000000000005049 154.0
PJD3_k127_4325863_12 COG2508 Regulator of polyketide synthase expression K09684 - - 0.00000000000000000000000000000000000006284 155.0
PJD3_k127_4325863_13 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000001893 154.0
PJD3_k127_4325863_14 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000006545 78.0
PJD3_k127_4325863_15 - - - - 0.0000000191 60.0
PJD3_k127_4325863_2 TIGRFAM lysine 2,3-aminomutase YodO family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 488.0
PJD3_k127_4325863_3 Voltage gated chloride channel K03281 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003353 493.0
PJD3_k127_4325863_4 ammonium transporter K03320 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 415.0
PJD3_k127_4325863_5 His Kinase A (phosphoacceptor) domain K07654 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 315.0
PJD3_k127_4325863_6 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004418 256.0
PJD3_k127_4325863_7 Sporulation and spore germination - - - 0.00000000000000000000000000000000000000000000000000000000000000000002541 243.0
PJD3_k127_4325863_8 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000007339 171.0
PJD3_k127_4325863_9 - - - - 0.000000000000000000000000000000000000000004906 158.0
PJD3_k127_4356754_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 GO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006547,GO:0006548,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016153,GO:0016829,GO:0016835,GO:0016836,GO:0019439,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 4.2.1.49 1.061e-310 964.0
PJD3_k127_4356754_1 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 1.46e-230 734.0
PJD3_k127_4356754_10 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000001397 115.0
PJD3_k127_4356754_11 transcriptional regulator - - - 0.000000000000000001305 99.0
PJD3_k127_4356754_12 2-oxoglutarate acceptor oxidoreductase K00176 - 1.2.7.3 0.0000000002328 65.0
PJD3_k127_4356754_2 Protein of unknown function (DUF521) K09123 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 539.0
PJD3_k127_4356754_3 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 542.0
PJD3_k127_4356754_4 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007829 404.0
PJD3_k127_4356754_5 Binding-protein-dependent transport system inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 378.0
PJD3_k127_4356754_6 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 347.0
PJD3_k127_4356754_7 PFAM Thiamine pyrophosphate enzyme, C-terminal K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 318.0
PJD3_k127_4356754_8 PFAM Pyruvate ferredoxin flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000001196 159.0
PJD3_k127_4356754_9 Protein of unknown function DUF126 K09128 - - 0.00000000000000000000000000000001242 144.0
PJD3_k127_4360249_0 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000278 228.0
PJD3_k127_4360249_1 Histidine kinase - - - 0.0000000000000000000000000000007665 139.0
PJD3_k127_4360249_2 negative regulation of translational initiation - - - 0.000000000000000000000000001908 118.0
PJD3_k127_4360249_3 - - - - 0.00000000000000000000000001778 115.0
PJD3_k127_4360249_4 Protein of unknown function (DUF1294) - - - 0.00000000000000000000003934 107.0
PJD3_k127_4360249_5 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.000000000005925 70.0
PJD3_k127_4360249_6 CAAX protease self-immunity K07052 - - 0.0000000008496 70.0
PJD3_k127_4422278_0 PFAM Cytochrome C assembly protein K02198 - - 2.102e-197 635.0
PJD3_k127_4422278_1 ABC transporter K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000002081 232.0
PJD3_k127_4422278_2 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000000000000000000000000000000000000000000007315 189.0
PJD3_k127_4422278_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000001106 83.0
PJD3_k127_4422278_4 subunit of a heme lyase K02200 - - 0.00000000000005071 79.0
PJD3_k127_4422278_5 ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 - - 0.000000001364 62.0
PJD3_k127_4422278_6 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000002799 57.0
PJD3_k127_4422278_7 Antifreeze protein type I - - - 0.00009621 51.0
PJD3_k127_4434336_0 PhoH-like protein K06217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 371.0
PJD3_k127_4434336_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000001512 240.0
PJD3_k127_4434336_2 Peptidase M23 K21471 - - 0.00000000000000000000000000000000000000000000000000000000000000001875 240.0
PJD3_k127_4434336_3 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.000000000000000000000000000004251 122.0
PJD3_k127_4434336_4 Yqey-like protein K09117 - - 0.000000000000000000000006866 106.0
PJD3_k127_4434336_5 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.00000000000000000000000832 117.0
PJD3_k127_4459236_0 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006929 252.0
PJD3_k127_4459236_1 Flavodoxin domain - - - 0.000000000000000000000000000000000000000000000000000002488 203.0
PJD3_k127_4459236_2 Kef-type K transport - - - 0.0000000000000000000005607 113.0
PJD3_k127_4459236_3 EamA-like transporter family - - - 0.0000000000000002358 88.0
PJD3_k127_4558845_0 Glycosyl hydrolase family 65, C-terminal domain K05342 - 2.4.1.64 0.0 1138.0
PJD3_k127_4558845_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 4.376e-236 745.0
PJD3_k127_4558845_10 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840,K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 306.0
PJD3_k127_4558845_11 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006116 291.0
PJD3_k127_4558845_12 Glycosyl hydrolase family 65, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000103 265.0
PJD3_k127_4558845_13 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006802 269.0
PJD3_k127_4558845_14 Plasmid partition ParA protein K09701 - - 0.00000000000000000000000000000000000000000000000000000000004971 217.0
PJD3_k127_4558845_15 TIGRFAM methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000009066 205.0
PJD3_k127_4558845_16 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000001485 178.0
PJD3_k127_4558845_17 PFAM ribonuclease H K03469,K06864 - 3.1.26.4 0.0000000000000000000000000000002032 141.0
PJD3_k127_4558845_18 Transcriptional regulator - - - 0.000000000000000000000000000222 123.0
PJD3_k127_4558845_19 Cyclopropane fatty acid synthase and related methyltransferases K00574 - 2.1.1.79 0.0000000000000007556 85.0
PJD3_k127_4558845_2 PFAM Cys Met metabolism K01740 - 2.5.1.49 1.737e-199 630.0
PJD3_k127_4558845_20 Major facilitator superfamily - - - 0.000001104 61.0
PJD3_k127_4558845_3 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840,K15778 - 5.4.2.2,5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 573.0
PJD3_k127_4558845_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 560.0
PJD3_k127_4558845_5 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001558 505.0
PJD3_k127_4558845_6 Flavin containing amine oxidoreductase K06954 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008317 414.0
PJD3_k127_4558845_7 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 399.0
PJD3_k127_4558845_8 Domain of unknown function (DUF4389) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003797 311.0
PJD3_k127_4558845_9 peptidase M24 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 310.0
PJD3_k127_4627730_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 511.0
PJD3_k127_4627730_1 COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007552 494.0
PJD3_k127_4627730_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004564 271.0
PJD3_k127_4627730_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000008811 238.0
PJD3_k127_4627730_4 TatD related DNase K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000004058 231.0
PJD3_k127_4627730_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000002383 211.0
PJD3_k127_4627730_6 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000001087 205.0
PJD3_k127_4627730_7 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.0000000000000000000000000000003024 135.0
PJD3_k127_4627730_8 Transcriptional regulator - - - 0.00000107 57.0
PJD3_k127_4629259_0 CoA transferase having broad substrate specificity for short-chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons K01026 - 2.8.3.1 2.769e-198 631.0
PJD3_k127_4629259_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002472 577.0
PJD3_k127_4629259_10 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004945 325.0
PJD3_k127_4629259_11 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 325.0
PJD3_k127_4629259_12 ATPases associated with a variety of cellular activities K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009767 306.0
PJD3_k127_4629259_13 transport system permease K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005101 292.0
PJD3_k127_4629259_14 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000003529 257.0
PJD3_k127_4629259_15 Receptor family ligand binding region K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000003103 251.0
PJD3_k127_4629259_16 TIGRFAM methyltransferase cognate corrinoid proteins, Methanosarcina family - - - 0.0000000000000000000000000000000000000000000000000000000000000000006633 235.0
PJD3_k127_4629259_17 Beta-galactosidase - - - 0.0000000000000000000000000000000000000000000002985 187.0
PJD3_k127_4629259_18 Purine catabolism regulatory protein-like family K09684 - - 0.000000000000000000000000000000000467 151.0
PJD3_k127_4629259_19 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.0000000000000000000000000000000008708 132.0
PJD3_k127_4629259_2 ABC-type dipeptide transport system K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007128 507.0
PJD3_k127_4629259_20 Protein of unknown function DUF126 K09128 - - 0.00000000000000000000000000000007581 130.0
PJD3_k127_4629259_21 Helix-turn-helix XRE-family like proteins - - - 0.0000000000000000000000000000002755 130.0
PJD3_k127_4629259_22 Catalyzes the transfer of a methyl group from dimethylamine to the corrinoid cofactor of MtbC K16178 - 2.1.1.249 0.0000000000000000000000000000009147 124.0
PJD3_k127_4629259_23 Esterase PHB depolymerase - - - 0.000000000009286 78.0
PJD3_k127_4629259_24 COG5598 Trimethylamine corrinoid methyltransferase K14083 - 2.1.1.250 0.00000000001565 73.0
PJD3_k127_4629259_3 Extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009556 480.0
PJD3_k127_4629259_4 Peptidase S15 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 432.0
PJD3_k127_4629259_5 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005924 389.0
PJD3_k127_4629259_6 Dimethylamine methyltransferase (Dimeth_PyL) K16178 - 2.1.1.249 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007188 377.0
PJD3_k127_4629259_7 Protein of unknown function (DUF521) K09123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008763 379.0
PJD3_k127_4629259_8 Branched-chain amino acid transport system / permease component K01997,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006815 351.0
PJD3_k127_4629259_9 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005119 355.0
PJD3_k127_4629865_0 Pyridoxal-dependent decarboxylase conserved domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 595.0
PJD3_k127_4629865_1 TIGRFAM cysteine desulfurase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 501.0
PJD3_k127_4629865_10 FR47-like protein - - - 0.000000000000000000000000000006414 125.0
PJD3_k127_4629865_11 Transcriptional regulator - - - 0.000000000000000003961 93.0
PJD3_k127_4629865_12 Protein of unknown function (DUF3052) - - - 0.00000000000000001895 88.0
PJD3_k127_4629865_13 Acetyltransferase (GNAT) family - - - 0.00000000003246 72.0
PJD3_k127_4629865_2 PFAM Formylglycine-generating sulfatase enzyme K20333 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 338.0
PJD3_k127_4629865_3 Phage tail protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002792 260.0
PJD3_k127_4629865_4 Uncharacterized protein conserved in bacteria (DUF2239) K09965 - - 0.000000000000000000000000000000000000000000000000006278 187.0
PJD3_k127_4629865_5 Glyoxalase-like domain - - - 0.00000000000000000000000000000000000000000002517 168.0
PJD3_k127_4629865_6 dna ligase K01971 - 6.5.1.1 0.0000000000000000000000000000000000000000007905 173.0
PJD3_k127_4629865_8 PFAM RibD C-terminal domain K00287 - 1.5.1.3 0.000000000000000000000000000000000001806 153.0
PJD3_k127_4629865_9 ACT domain K09707 - - 0.000000000000000000000000000000002362 143.0
PJD3_k127_4633312_0 PKD domain - - - 0.00000000000000000000000000000000000000000000000000002992 211.0
PJD3_k127_4633312_1 Major facilitator Superfamily - - - 0.00000000000000000000000000000000003352 144.0
PJD3_k127_4644978_0 Amino acid permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 467.0
PJD3_k127_4644978_1 fumarylacetoacetate (FAA) hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006047 270.0
PJD3_k127_4644978_2 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000006798 230.0
PJD3_k127_4644978_3 response regulator, receiver - - - 0.00000000000000000000000000000002071 141.0
PJD3_k127_4644978_4 luxR family K08087 - - 0.000000000002867 79.0
PJD3_k127_4644978_5 Ethanolamine utilisation protein EutQ K04030 - - 0.0004761 48.0
PJD3_k127_466126_0 Glycosyltransferase Family 4 K08256 - 2.4.1.345 2.931e-244 773.0
PJD3_k127_466126_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009441 605.0
PJD3_k127_466126_2 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000007491 219.0
PJD3_k127_466126_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.00000000000000000000000005863 112.0
PJD3_k127_466126_4 - - - - 0.0000000003752 66.0
PJD3_k127_4671142_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 348.0
PJD3_k127_4671142_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009944 263.0
PJD3_k127_4671142_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003,K05685 - - 0.000000000000000000000000000000000000000000000000000000000000000000002889 248.0
PJD3_k127_4671142_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002696 259.0
PJD3_k127_4671142_4 ABC-type transport system involved in lipoprotein release permease component K02004 - - 0.00000000000000000000000000000000000000000000000005654 192.0
PJD3_k127_4671142_5 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000002014 171.0
PJD3_k127_4681101_0 Monomethylamine methyltransferase MtmB K16176 - 2.1.1.248 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000752 542.0
PJD3_k127_4681101_1 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 492.0
PJD3_k127_4681101_2 PFAM Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009956 450.0
PJD3_k127_4681101_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000005724 245.0
PJD3_k127_4681101_4 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000002256 190.0
PJD3_k127_4681101_5 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain - - - 0.0000000000000000000000000000000000000000000003052 182.0
PJD3_k127_4681101_6 TIGRFAM methyltransferase cognate corrinoid proteins, Methanosarcina family K00548 - 2.1.1.13 0.00000000000000000000002263 103.0
PJD3_k127_4734200_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 471.0
PJD3_k127_4734200_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 425.0
PJD3_k127_4734200_10 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.000000000000000000000000000000000000000000000000000000000004932 209.0
PJD3_k127_4734200_11 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000008354 170.0
PJD3_k127_4734200_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000007068 163.0
PJD3_k127_4734200_13 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000091 161.0
PJD3_k127_4734200_14 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000003082 145.0
PJD3_k127_4734200_15 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000001002 145.0
PJD3_k127_4734200_16 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000001137 145.0
PJD3_k127_4734200_17 50S ribosomal protein L4 K02926 - - 0.0000000000000000000000000000000008819 138.0
PJD3_k127_4734200_18 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000002632 129.0
PJD3_k127_4734200_19 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000002693 126.0
PJD3_k127_4734200_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 343.0
PJD3_k127_4734200_20 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000006556 108.0
PJD3_k127_4734200_21 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000001439 106.0
PJD3_k127_4734200_22 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000009242 112.0
PJD3_k127_4734200_23 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000004894 103.0
PJD3_k127_4734200_24 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.00000000000000233 77.0
PJD3_k127_4734200_25 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000000008889 72.0
PJD3_k127_4734200_26 Ribosomal protein L30 K02907 - - 0.0000000000006563 70.0
PJD3_k127_4734200_3 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003385 310.0
PJD3_k127_4734200_4 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006604 278.0
PJD3_k127_4734200_5 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002178 256.0
PJD3_k127_4734200_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000002309 239.0
PJD3_k127_4734200_7 Belongs to the universal ribosomal protein uS5 family K02988 - - 0.000000000000000000000000000000000000000000000000000000000000000000006507 238.0
PJD3_k127_4734200_8 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000886 239.0
PJD3_k127_4734200_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000001078 226.0
PJD3_k127_4743429_0 PFAM Aminotransferase class I and II K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004084 566.0
PJD3_k127_4743429_1 COG0531 Amino acid transporters - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005342 511.0
PJD3_k127_4743429_10 CorA-like Mg2+ transporter protein - - - 0.000000000000000000000000000000000000000009438 167.0
PJD3_k127_4743429_11 Uncharacterized BCR, YaiI/YqxD family COG1671 K09768 - - 0.00000000000000000000000000000000000000003586 158.0
PJD3_k127_4743429_12 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000232 126.0
PJD3_k127_4743429_13 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000000006648 97.0
PJD3_k127_4743429_14 Transcriptional regulator - - - 0.000000000000000003075 87.0
PJD3_k127_4743429_15 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000007466 90.0
PJD3_k127_4743429_16 - - - - 0.0000000000002251 78.0
PJD3_k127_4743429_2 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 385.0
PJD3_k127_4743429_3 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 330.0
PJD3_k127_4743429_4 ABC-type multidrug transport system, permease component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009886 315.0
PJD3_k127_4743429_5 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005036 279.0
PJD3_k127_4743429_6 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000409 260.0
PJD3_k127_4743429_7 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000008811 213.0
PJD3_k127_4743429_8 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000001091 197.0
PJD3_k127_4743429_9 LUD domain - - - 0.0000000000000000000000000000000000000000007028 165.0
PJD3_k127_4759870_0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K07516 - 1.1.1.35 7.89e-305 955.0
PJD3_k127_4759870_1 DEAD DEAH box helicase domain protein K03654 - 3.6.4.12 6.334e-254 797.0
PJD3_k127_4759870_10 Isochorismatase family K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000004169 191.0
PJD3_k127_4759870_11 ABC transporter substrate-binding protein K02030 - - 0.0000000000000000000000000000000000000000000003294 180.0
PJD3_k127_4759870_12 - - - - 0.00000000000000000000000000000005068 133.0
PJD3_k127_4759870_13 PFAM regulatory protein AsnC Lrp family K03718 - - 0.00000000000000000000000000006222 121.0
PJD3_k127_4759870_14 lactoylglutathione lyase activity - - - 0.00000000000000000000000003211 112.0
PJD3_k127_4759870_15 endoribonuclease L-PSP - - - 0.00000000000000007842 86.0
PJD3_k127_4759870_16 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000002695 72.0
PJD3_k127_4759870_2 COG1960 Acyl-CoA dehydrogenases K00248 - 1.3.8.1 4.783e-238 752.0
PJD3_k127_4759870_3 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 9.421e-217 688.0
PJD3_k127_4759870_4 Belongs to the thiolase family K00632 - 2.3.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 508.0
PJD3_k127_4759870_5 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 456.0
PJD3_k127_4759870_6 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 437.0
PJD3_k127_4759870_7 ABC transporter, ATP-binding protein K02028 - 3.6.3.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008 400.0
PJD3_k127_4759870_8 FAD dependent oxidoreductase K00285 - 1.4.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007455 331.0
PJD3_k127_4759870_9 Binding-protein-dependent transport system inner membrane component K02029 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004701 309.0
PJD3_k127_4831519_0 aconitate hydratase K01681 - 4.2.1.3 4.382e-311 975.0
PJD3_k127_4831519_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.00000000000000000000000000006888 117.0
PJD3_k127_4831519_2 Conserved Protein - - - 0.000000004756 66.0
PJD3_k127_4840162_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 3.537e-223 713.0
PJD3_k127_4840162_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008167 394.0
PJD3_k127_4840162_10 TIGRFAM DNA polymerase III, delta K02341 - 2.7.7.7 0.000000000000000000000000000000000000000004399 169.0
PJD3_k127_4840162_11 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000004115 160.0
PJD3_k127_4840162_12 Belongs to the anti-sigma-factor antagonist family K04749 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000001336 109.0
PJD3_k127_4840162_13 Domain of unknown function (DUF3786) - - - 0.000000000000000000001012 105.0
PJD3_k127_4840162_14 cytochrome complex assembly K02200,K04018 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0022607,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0065003,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000001328 88.0
PJD3_k127_4840162_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 385.0
PJD3_k127_4840162_3 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960,K20810 GO:0003674,GO:0003824,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0050270 3.5.4.28,3.5.4.31,3.5.4.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 359.0
PJD3_k127_4840162_4 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 302.0
PJD3_k127_4840162_5 PSP1 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002303 292.0
PJD3_k127_4840162_6 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000003261 268.0
PJD3_k127_4840162_7 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003669 261.0
PJD3_k127_4840162_8 Secreted protein - - - 0.000000000000000000000000000000000000000000000000000000000001183 232.0
PJD3_k127_4840162_9 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.000000000000000000000000000000000000000000000000000006075 200.0
PJD3_k127_4870374_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead - - - 0.0 1172.0
PJD3_k127_4870374_1 DNA topological change K03168,K03658 - 3.6.4.12,5.99.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001353 441.0
PJD3_k127_4870374_2 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM CutM-like protein K03519 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 312.0
PJD3_k127_4870374_3 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 304.0
PJD3_k127_4870374_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000005556 224.0
PJD3_k127_4870374_5 bacterial-type flagellum-dependent cell motility - - - 0.0000000008016 71.0
PJD3_k127_4889320_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 3.053e-227 719.0
PJD3_k127_4889320_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 499.0
PJD3_k127_4889320_10 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004926 308.0
PJD3_k127_4889320_11 Glycosyl transferase, family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 307.0
PJD3_k127_4889320_12 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009817 273.0
PJD3_k127_4889320_13 Psort location CytoplasmicMembrane, score 10.00 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009433 275.0
PJD3_k127_4889320_14 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009912 288.0
PJD3_k127_4889320_15 thymidylate synthase (FAD) activity K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000882 261.0
PJD3_k127_4889320_16 Thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000003093 237.0
PJD3_k127_4889320_17 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000002907 240.0
PJD3_k127_4889320_18 Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16783,K16785 - - 0.000000000000000000000000000000000000000000000000000000000000002113 235.0
PJD3_k127_4889320_19 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000002075 222.0
PJD3_k127_4889320_2 MMPL family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 441.0
PJD3_k127_4889320_20 PFAM Cytidine and deoxycytidylate deaminase zinc-binding region K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000000000000002941 220.0
PJD3_k127_4889320_21 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000009574 200.0
PJD3_k127_4889320_22 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000009836 190.0
PJD3_k127_4889320_23 sugar-phosphate isomerases, RpiB LacA LacB family K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000629 171.0
PJD3_k127_4889320_24 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000007412 158.0
PJD3_k127_4889320_25 PFAM CBS domain - - - 0.000000000000000000000000000000000000000001083 162.0
PJD3_k127_4889320_26 NADPH-dependent FMN reductase K19784 - - 0.00000000000000000000000000000000000000004427 162.0
PJD3_k127_4889320_27 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000001367 158.0
PJD3_k127_4889320_28 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000008132 143.0
PJD3_k127_4889320_29 Ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000005323 134.0
PJD3_k127_4889320_3 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 GO:0008150,GO:0040007 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 417.0
PJD3_k127_4889320_30 Binds the 23S rRNA K02909 - - 0.000000000000000000000000001466 112.0
PJD3_k127_4889320_31 PFAM Alanine racemase, N-terminal domain K21898 - 5.1.1.12 0.0000000000000000000000007363 118.0
PJD3_k127_4889320_32 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000000000000000316 108.0
PJD3_k127_4889320_33 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001886 107.0
PJD3_k127_4889320_34 enzyme binding K00567,K07443 - 2.1.1.63 0.000000000000000008894 88.0
PJD3_k127_4889320_35 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000001094 94.0
PJD3_k127_4889320_36 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000002637 75.0
PJD3_k127_4889320_37 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.00004571 52.0
PJD3_k127_4889320_4 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004111 388.0
PJD3_k127_4889320_5 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 366.0
PJD3_k127_4889320_6 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 328.0
PJD3_k127_4889320_7 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16786,K16787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 342.0
PJD3_k127_4889320_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004422 315.0
PJD3_k127_4889320_9 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 312.0
PJD3_k127_4892167_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1178.0
PJD3_k127_4892167_1 AMP-binding enzyme K12508 - 6.2.1.34 8.645e-209 666.0
PJD3_k127_4892167_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 421.0
PJD3_k127_4892167_3 B3 4 domain - - - 0.00000000000000000000000000000000000000000000000000000000002504 212.0
PJD3_k127_4892167_4 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124,K07307 - - 0.000000000000000000000000000000000000000000000002248 184.0
PJD3_k127_4892167_5 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K07540,K18427 - 2.3.1.54,4.1.1.83,4.1.99.11 0.0000000000000000000000000007896 119.0
PJD3_k127_4916052_0 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 301.0
PJD3_k127_4916052_1 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000007054 219.0
PJD3_k127_4916052_2 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00362 - 1.7.1.15 0.000000000000000000000000000000000001808 154.0
PJD3_k127_4916052_3 sequence-specific DNA binding K03718 - - 0.0000000000000000000000000003827 120.0
PJD3_k127_4916052_4 Catalyzes the transfer of a methyl group from trimethylamine to the corrinoid cofactor of MttC K14083 - 2.1.1.250 0.00000000000000000001214 92.0
PJD3_k127_4917447_0 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.0000000000000000000000000002768 128.0
PJD3_k127_4917447_1 denitrification pathway - - - 0.000000000000001544 88.0
PJD3_k127_4917447_2 Lipid A core - O-antigen ligase K18814 - - 0.0008596 52.0
PJD3_k127_4977644_0 Domain of unknown function (DUF362) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009351 362.0
PJD3_k127_4977644_1 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000001159 205.0
PJD3_k127_4977644_2 TIGRFAM Haloacid Dehalogenase Superfamily Class (subfamily) IIA - GO:0000121,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009987,GO:0016042,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0030145,GO:0042578,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046872,GO:0046914,GO:0046983,GO:0050897,GO:0071704,GO:1901575 - 0.0000000000000000000000000000000000000000000000000003195 196.0
PJD3_k127_4977644_3 Oxidoreductase FAD-binding domain - - - 0.000000000000000000000000000000000000000000000001769 182.0
PJD3_k127_4977644_4 Belongs to the UPF0337 (CsbD) family - - - 0.00000000000000000000001076 102.0
PJD3_k127_4977644_5 PBS lyase HEAT-like repeat - - - 0.00000000000000000005496 96.0
PJD3_k127_4977644_6 PFAM Transglycosylase-associated protein - - - 0.00000000000000001167 90.0
PJD3_k127_4977644_9 Amino acid permease - - - 0.00004346 49.0
PJD3_k127_5007537_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1183.0
PJD3_k127_5007537_1 TIGRFAM cysteine desulfurase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001875 390.0
PJD3_k127_5007537_10 Transglutaminase/protease-like homologues - - - 0.0000000000000000000000000000000000000008201 171.0
PJD3_k127_5007537_11 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000001161 153.0
PJD3_k127_5007537_12 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000001048 118.0
PJD3_k127_5007537_13 phosphoesterase, PA-phosphatase related - - - 0.00000000000000000003213 98.0
PJD3_k127_5007537_14 4 iron, 4 sulfur cluster binding K00176,K00528,K03737,K20449 - 1.18.1.2,1.19.1.1,1.2.7.1,1.2.7.3,1.3.7.1 0.0000000000000000883 85.0
PJD3_k127_5007537_15 heat shock protein binding - - - 0.00000001047 64.0
PJD3_k127_5007537_16 Glycosyl transferase family 41 - - - 0.0000000121 64.0
PJD3_k127_5007537_17 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.0007598 50.0
PJD3_k127_5007537_2 ATPase associated with various cellular activities K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004643 363.0
PJD3_k127_5007537_3 SMART Elongator protein 3 MiaB NifB K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006799 336.0
PJD3_k127_5007537_4 zinc ion binding K04486 - 3.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000001437 268.0
PJD3_k127_5007537_5 Domain of unknown function - - - 0.00000000000000000000000000000000000000000000000000001187 201.0
PJD3_k127_5007537_6 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000000000001047 192.0
PJD3_k127_5007537_7 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.00000000000000000000000000000000000000000000000005794 205.0
PJD3_k127_5007537_8 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.0000000000000000000000000000000000000000000000009489 193.0
PJD3_k127_5007537_9 Diacylglycerol kinase catalytic domain (presumed) - - - 0.000000000000000000000000000000000000000000002758 181.0
PJD3_k127_5065463_0 PFAM Penicillinase repressor - - - 0.0000000000000000000000000008191 119.0
PJD3_k127_5065463_1 membrane - - - 0.00000000000000000000000185 115.0
PJD3_k127_5065463_2 BlaR1 peptidase M56 - - - 0.0000000000002002 82.0
PJD3_k127_5156586_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001162 363.0
PJD3_k127_5156586_1 PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002154 238.0
PJD3_k127_5156586_2 hydrolase (metallo-beta-lactamase superfamily) K02238 - - 0.000000000000000000008639 101.0
PJD3_k127_5192922_0 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 564.0
PJD3_k127_5192922_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 560.0
PJD3_k127_5192922_2 Extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 409.0
PJD3_k127_5192922_3 ABC-type dipeptide oligopeptide nickel transport K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 294.0
PJD3_k127_5192922_4 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008568 289.0
PJD3_k127_5192922_5 B12 binding domain - - - 0.000000001158 59.0
PJD3_k127_5192922_6 PFAM Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0005125 48.0
PJD3_k127_5229240_0 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 326.0
PJD3_k127_5229240_1 Beta-lactamase superfamily domain K00784 - 3.1.26.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006582 306.0
PJD3_k127_5229240_2 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 303.0
PJD3_k127_5229240_3 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000006712 254.0
PJD3_k127_5229240_4 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.000000000000000000000000000000000000000000000009614 181.0
PJD3_k127_5229240_5 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.0000000000000000000000000000000000000002665 160.0
PJD3_k127_5229240_6 PFAM amino acid-binding ACT domain protein - - - 0.000000000000000000001808 98.0
PJD3_k127_5259681_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.365e-269 843.0
PJD3_k127_5259681_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003441 361.0
PJD3_k127_5259681_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000663 156.0
PJD3_k127_5303637_0 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 590.0
PJD3_k127_5303637_1 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005519 402.0
PJD3_k127_5303637_2 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009739 345.0
PJD3_k127_5303637_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 325.0
PJD3_k127_5303637_4 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008922 307.0
PJD3_k127_5303637_5 PFAM YhhN family protein - - - 0.00000000000000000000000000000000000000000000000000006261 196.0
PJD3_k127_5303637_6 Protein of unknown function (DUF4230) - - - 0.00000000000000000007177 100.0
PJD3_k127_5303637_7 Beta-lactamase - - - 0.0000000000000000002266 102.0
PJD3_k127_5303637_9 - - - - 0.0000000000003019 70.0
PJD3_k127_530729_0 TIGRFAM acetolactate synthase, large subunit, biosynthetic type K01652 - 2.2.1.6 9.216e-215 682.0
PJD3_k127_530729_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.635e-205 659.0
PJD3_k127_530729_10 TIGRFAM Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0030312,GO:0032991,GO:0040007,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000794 218.0
PJD3_k127_530729_11 Repressor involved in choline regulation of the bet genes K02167 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0043565,GO:0044212,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.00000000493 66.0
PJD3_k127_530729_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009603 572.0
PJD3_k127_530729_3 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001644 490.0
PJD3_k127_530729_4 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 480.0
PJD3_k127_530729_5 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001695 475.0
PJD3_k127_530729_6 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 467.0
PJD3_k127_530729_7 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 447.0
PJD3_k127_530729_8 Sodium:solute symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 413.0
PJD3_k127_530729_9 Arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000001958 259.0
PJD3_k127_5313897_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 1.323e-273 846.0
PJD3_k127_5313897_1 PFAM Hydantoinase oxoprolinase K01473 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007548 588.0
PJD3_k127_5315209_0 transporter, DctM subunit K11690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 480.0
PJD3_k127_5315209_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 475.0
PJD3_k127_5315209_10 serine-type aminopeptidase activity K02030,K14475 - - 0.0000000000000003448 83.0
PJD3_k127_5315209_2 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009829 331.0
PJD3_k127_5315209_3 Ndr family K01055 - 3.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001791 284.0
PJD3_k127_5315209_4 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 GO:0000731,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0018130,GO:0019438,GO:0019985,GO:0030312,GO:0031668,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044464,GO:0046483,GO:0046677,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000004757 287.0
PJD3_k127_5315209_5 AAA ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000003593 228.0
PJD3_k127_5315209_6 binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000002504 210.0
PJD3_k127_5315209_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.000000000000000000000000001578 118.0
PJD3_k127_5315209_8 Protein of unknown function (DUF2283) - - - 0.000000000000000000008191 94.0
PJD3_k127_5315209_9 TfoX N-terminal domain K07343 - - 0.0000000000000000008978 89.0
PJD3_k127_5349190_0 Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000000000000000000000000004927 184.0
PJD3_k127_5349190_1 Methionine synthase B12-binding module cap domain protein K00548 - 2.1.1.13 0.0000000000000000000000000001807 132.0
PJD3_k127_5349190_2 Acts as a methyl group carrier between MtbB and MtbA K16179 - - 0.000000000000000000000000004955 111.0
PJD3_k127_5413532_0 formate C-acetyltransferase glycine radical - - - 6.192e-195 638.0
PJD3_k127_5413532_1 Aminotransferase class-III K01845 - 5.4.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005162 572.0
PJD3_k127_5413532_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004828 470.0
PJD3_k127_5413532_3 TIGRFAM glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000002483 258.0
PJD3_k127_5413532_4 Protein of unknown function (DUF3465) - - - 0.00000000000000000000000000000000000000003474 159.0
PJD3_k127_5413532_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.00000000000000000000000000000002017 128.0
PJD3_k127_5413532_6 regulatory protein TetR - - - 0.00000000000000000000000003183 115.0
PJD3_k127_5413532_7 - - - - 0.0000000000000000000000006239 109.0
PJD3_k127_5435000_0 helicase activity - - - 1.083e-309 970.0
PJD3_k127_5435000_1 Found in ATP-dependent protease La (LON) K01338 - 3.4.21.53 1.172e-301 947.0
PJD3_k127_5435000_10 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 312.0
PJD3_k127_5435000_11 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000148 256.0
PJD3_k127_5435000_12 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000001716 251.0
PJD3_k127_5435000_13 PFAM Transglutaminase-like K22452 - 2.3.2.13 0.000000000000000000000000000000000000000000000000000000000000002494 241.0
PJD3_k127_5435000_14 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000008439 174.0
PJD3_k127_5435000_15 PFAM Thiamin pyrophosphokinase, catalytic region K00949 - 2.7.6.2 0.0000000000000000000000000000000000000004317 158.0
PJD3_k127_5435000_16 KR domain - - - 0.00000000000000000000000000000000000002966 158.0
PJD3_k127_5435000_17 PHP-associated - - - 0.00000000000000000000000000000001206 137.0
PJD3_k127_5435000_18 Polysulphide reductase, NrfD - - - 0.0000000000000000000000005899 110.0
PJD3_k127_5435000_19 Hsp20/alpha crystallin family K13993 - - 0.000000000000000000001461 104.0
PJD3_k127_5435000_2 ABC-type Fe3 transport system permease component K02011,K02063 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 560.0
PJD3_k127_5435000_20 PFAM PASTA domain - - - 0.0000000000000005832 90.0
PJD3_k127_5435000_21 Right handed beta helix region - - - 0.0000000000000123 87.0
PJD3_k127_5435000_22 Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently - - - 0.0000000007001 68.0
PJD3_k127_5435000_3 Belongs to the RtcB family K14415 - 6.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 547.0
PJD3_k127_5435000_4 PFAM Radical SAM K04069 - 1.97.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002839 396.0
PJD3_k127_5435000_5 Bacterial extracellular solute-binding protein K02064 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000292 393.0
PJD3_k127_5435000_6 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007929 345.0
PJD3_k127_5435000_7 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 340.0
PJD3_k127_5435000_8 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001473 337.0
PJD3_k127_5435000_9 Belongs to the ABC transporter superfamily K02052,K02062 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 321.0
PJD3_k127_5444923_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003304 394.0
PJD3_k127_5444923_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000005241 256.0
PJD3_k127_5444923_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000000002158 220.0
PJD3_k127_5444923_3 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000002755 173.0
PJD3_k127_5444923_4 Peptidase family M50 K11749 - - 0.000000000000000000000000000006485 126.0
PJD3_k127_5462309_0 PFAM Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 1.455e-198 636.0
PJD3_k127_5462309_1 PFAM Aminotransferase class I and II K11358 - 2.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 495.0
PJD3_k127_5462309_10 - - - - 0.000000007173 67.0
PJD3_k127_5462309_11 PFAM ThiamineS - - - 0.0000006275 54.0
PJD3_k127_5462309_12 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03636 - - 0.0002075 48.0
PJD3_k127_5462309_2 Pyridine nucleotide-disulphide oxidoreductase K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005254 411.0
PJD3_k127_5462309_3 Hit family K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000000000000009908 201.0
PJD3_k127_5462309_4 Appr-1'-p processing enzyme - - - 0.0000000000000000000000000000000000000000000000000004561 198.0
PJD3_k127_5462309_5 Protein of unknown function (DUF1385) - - - 0.00000000000000000000000000000000000000000000001031 185.0
PJD3_k127_5462309_6 GDP-mannose mannosyl hydrolase activity K01515,K03574,K08310,K19965 - 3.6.1.13,3.6.1.55,3.6.1.67 0.00000000000000000000000004659 115.0
PJD3_k127_5462309_7 - - - - 0.000000000000000000001487 103.0
PJD3_k127_5462309_8 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000009885 81.0
PJD3_k127_5462309_9 Mut7-C ubiquitin K03154 - - 0.000000000002794 70.0
PJD3_k127_5485645_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007437 406.0
PJD3_k127_5485645_1 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005569 392.0
PJD3_k127_5485645_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000633 249.0
PJD3_k127_5485645_3 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000005619 217.0
PJD3_k127_5485645_4 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000002029 208.0
PJD3_k127_5485645_5 4Fe-4S dicluster domain K00171 - 1.2.7.1 0.00000000000000000000000000000000009593 140.0
PJD3_k127_5485645_6 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000001253 133.0
PJD3_k127_5485645_7 COG0517 FOG CBS domain - - - 0.00000000000000000000000000000007318 132.0
PJD3_k127_5485645_8 Protein of unknown function (DUF4013) - - - 0.00000000000000000000000000009824 124.0
PJD3_k127_5485645_9 MbtH-like protein K05375 - - 0.000000000007516 77.0
PJD3_k127_5485884_0 Penicillin amidase K01434 - 3.5.1.11 6.233e-276 877.0
PJD3_k127_5485884_1 Belongs to the TPP enzyme family K01652 - 2.2.1.6 1.442e-216 685.0
PJD3_k127_5485884_10 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000001375 241.0
PJD3_k127_5485884_11 PFAM flavin reductase domain protein FMN-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000002065 235.0
PJD3_k127_5485884_12 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000004497 218.0
PJD3_k127_5485884_13 FCD - - - 0.00000000000000000000000000000000000000002724 166.0
PJD3_k127_5485884_14 Thioesterase K12500 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0047617,GO:0055114,GO:0071704,GO:0072329,GO:1901575 - 0.00000000000000000000000000006527 122.0
PJD3_k127_5485884_15 Redoxin K03564 - 1.11.1.15 0.00000000000000004548 84.0
PJD3_k127_5485884_16 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000007269 76.0
PJD3_k127_5485884_17 Redoxin K03564 - 1.11.1.15 0.00002533 48.0
PJD3_k127_5485884_2 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008198 458.0
PJD3_k127_5485884_3 Peptidase family M20/M25/M40 K01439 - 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924 391.0
PJD3_k127_5485884_4 COG0604 NADPH quinone reductase and related Zn-dependent K19745 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 376.0
PJD3_k127_5485884_5 TIGRFAM carbamoyl-phosphate synthase, small subunit K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 375.0
PJD3_k127_5485884_6 PFAM 4Fe-4S ferredoxin iron-sulfur binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001235 377.0
PJD3_k127_5485884_7 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005858 355.0
PJD3_k127_5485884_8 PFAM Uracil-DNA glycosylase superfamily K10800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 306.0
PJD3_k127_5485884_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000003844 242.0
PJD3_k127_5530188_0 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 393.0
PJD3_k127_5530188_1 ABC-type transport system, involved in lipoprotein release, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000044 286.0
PJD3_k127_5530188_10 Ammonium Transporter K03320 - - 0.0000004463 52.0
PJD3_k127_5530188_2 ABC-type antimicrobial peptide transport system, ATPase component K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003897 258.0
PJD3_k127_5530188_3 Tetracyclin repressor, C-terminal all-alpha domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001447 228.0
PJD3_k127_5530188_4 Domain of unknown function (DUF4386) - - - 0.000000000000000000000000000000000000000000000000001817 192.0
PJD3_k127_5530188_5 Belongs to the P(II) protein family K04752 - - 0.000000000000000000000000000000000000000000000117 171.0
PJD3_k127_5530188_6 Zinc-binding dehydrogenase K00121 - 1.1.1.1,1.1.1.284 0.000000000000000000000000000000000000000000001596 173.0
PJD3_k127_5530188_7 Transcriptional regulator - - - 0.0000000000000000000004945 109.0
PJD3_k127_5530188_9 Peptidyl-prolyl cis-trans K03775 - 5.2.1.8 0.00000000001548 65.0
PJD3_k127_5540012_0 glutamine synthetase K01915 - 6.3.1.2 8.522e-232 725.0
PJD3_k127_5540012_1 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase K00162,K21417 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 368.0
PJD3_k127_5540012_2 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000004196 233.0
PJD3_k127_5540012_3 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K21416 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000364 235.0
PJD3_k127_5540012_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000005754 188.0
PJD3_k127_5540012_5 - - - - 0.000000000000000000000000393 109.0
PJD3_k127_5540012_6 Regulator of polyketide synthase expression K09684 - - 0.0000000000000000000003027 103.0
PJD3_k127_5543197_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007503 497.0
PJD3_k127_5543197_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 368.0
PJD3_k127_5543197_2 Peptidase family M50 K11749 - - 0.0000000000000000000000008071 110.0
PJD3_k127_5548634_0 AAA domain - - - 3.424e-252 802.0
PJD3_k127_5548634_1 Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 538.0
PJD3_k127_5548634_2 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006661 497.0
PJD3_k127_5548634_3 PFAM 2-nitropropane dioxygenase NPD K00459,K02371 - 1.13.12.16,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006411 402.0
PJD3_k127_5548634_4 PFAM Cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 361.0
PJD3_k127_5548634_5 PFAM MscS Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 299.0
PJD3_k127_5548634_6 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000002088 212.0
PJD3_k127_5548634_7 Mannose-6-phosphate isomerase K16011 - 2.7.7.13,5.3.1.8 0.000000000000000004418 86.0
PJD3_k127_5625344_0 - - - - 0.0 1050.0
PJD3_k127_5625344_1 Fe-S cluster domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003138 284.0
PJD3_k127_5625344_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000006477 235.0
PJD3_k127_5625344_3 Cell envelope-like function transcriptional attenuator common domain protein - - - 0.00000000000000000000000000000000000000001747 164.0
PJD3_k127_5625344_4 Haem-binding domain - - - 0.00000000000000000000000000000000000163 155.0
PJD3_k127_5625344_5 - - - - 0.00000000000000000000000000004536 123.0
PJD3_k127_5625344_6 Winged helix DNA-binding domain - - - 0.000000000000000001022 90.0
PJD3_k127_5625344_7 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000000005664 80.0
PJD3_k127_5625901_0 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 340.0
PJD3_k127_5625901_1 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002847 349.0
PJD3_k127_5625901_2 Asp23 family, cell envelope-related function - - - 0.0000004591 56.0
PJD3_k127_5625901_3 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - - - 0.0000005681 59.0
PJD3_k127_5633730_0 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003224 555.0
PJD3_k127_5633730_1 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 338.0
PJD3_k127_5633730_2 phosphoprotein phosphatase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001046 256.0
PJD3_k127_5633730_3 Cobalamin synthesis protein cobW C-terminal domain - - - 0.000000000000000000000000000000000000000000001312 177.0
PJD3_k127_5633730_4 PFAM 2-hydroxyglutaryl-CoA dehydratase D-component - - - 0.000000000000000000000000000000000000000002915 178.0
PJD3_k127_5633730_6 mercury ion transmembrane transporter activity K07213 - - 0.00000000000007417 77.0
PJD3_k127_5648222_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006105 321.0
PJD3_k127_5648222_1 4Fe-4S dicluster domain - - - 0.0000000000000000000000000000000000003296 145.0
PJD3_k127_5648222_2 transcriptional regulator - - - 0.0000002623 60.0
PJD3_k127_5669959_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 9.452e-234 745.0
PJD3_k127_5669959_1 Ftsk_gamma K03466 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008014 626.0
PJD3_k127_5669959_10 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 317.0
PJD3_k127_5669959_11 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 304.0
PJD3_k127_5669959_12 ABC transporter substrate-binding protein PnrA-like K02058,K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004571 288.0
PJD3_k127_5669959_13 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000001346 238.0
PJD3_k127_5669959_14 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000008351 221.0
PJD3_k127_5669959_15 Rhodanese Homology Domain - - - 0.00000000000000000000000000000000000000000000000000000000001737 220.0
PJD3_k127_5669959_16 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000672 195.0
PJD3_k127_5669959_17 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000002175 168.0
PJD3_k127_5669959_18 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000003389 159.0
PJD3_k127_5669959_19 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000002448 132.0
PJD3_k127_5669959_2 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 610.0
PJD3_k127_5669959_20 Belongs to the ribF family K11753 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008531,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009156,GO:0009161,GO:0009165,GO:0009231,GO:0009259,GO:0009260,GO:0009398,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034641,GO:0034654,GO:0042364,GO:0042726,GO:0042727,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046444,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.26,2.7.7.2 0.00000000000000000000000000000001484 131.0
PJD3_k127_5669959_21 Domain of unknown function (DUF4115) - - - 0.000000000000000000000006236 111.0
PJD3_k127_5669959_22 LigT like Phosphoesterase K01975 - 3.1.4.58 0.00000000000003623 80.0
PJD3_k127_5669959_23 Prokaryotic N-terminal methylation motif - - - 0.0000000000001341 76.0
PJD3_k127_5669959_24 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000007525 76.0
PJD3_k127_5669959_25 Modulates RecA activity K03565 - - 0.0000000000007774 78.0
PJD3_k127_5669959_26 Fibronectin type 3 domain - - - 0.0004369 53.0
PJD3_k127_5669959_3 Endoribonuclease that initiates mRNA decay K18682 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 605.0
PJD3_k127_5669959_4 ABC transporter K02056 - 3.6.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 537.0
PJD3_k127_5669959_5 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 481.0
PJD3_k127_5669959_6 PFAM Aminotransferase class I and II K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 471.0
PJD3_k127_5669959_7 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 413.0
PJD3_k127_5669959_8 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009597 382.0
PJD3_k127_5669959_9 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 320.0
PJD3_k127_5746272_0 Alanine-glyoxylate amino-transferase K05825 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 473.0
PJD3_k127_5746272_1 Domain of unknown function (DUF4162) K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008583 331.0
PJD3_k127_5746272_10 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000004626 195.0
PJD3_k127_5746272_11 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.000000000000000000000000000000000000000001732 164.0
PJD3_k127_5746272_12 HAD-hyrolase-like - - - 0.0000000000000000000000000000000000001484 149.0
PJD3_k127_5746272_13 PFAM BioY protein K03523 - - 0.0000000000000000000000000006338 122.0
PJD3_k127_5746272_14 VanW like protein - - - 0.00000000000000000000004693 113.0
PJD3_k127_5746272_15 Domain of unknown function (DUF4126) - - - 0.000000000000006741 89.0
PJD3_k127_5746272_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 317.0
PJD3_k127_5746272_3 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003026 288.0
PJD3_k127_5746272_4 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000007995 239.0
PJD3_k127_5746272_5 Protein of unknown function DUF89 K09116 - - 0.000000000000000000000000000000000000000000000000000000000005594 225.0
PJD3_k127_5746272_6 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000000000000000000000005088 214.0
PJD3_k127_5746272_7 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP) K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000003148 211.0
PJD3_k127_5746272_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000008801 215.0
PJD3_k127_5746272_9 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000001118 214.0
PJD3_k127_575189_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008004 534.0
PJD3_k127_575189_1 Domain of unknown function(DUF2779) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 383.0
PJD3_k127_575189_2 - - - - 0.000000000000000000000008135 111.0
PJD3_k127_575189_3 repeat protein - - - 0.0000000000003421 84.0
PJD3_k127_5873553_0 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 524.0
PJD3_k127_5873553_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008825 494.0
PJD3_k127_5873553_2 Protein of unknown function (DUF1722) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000895 384.0
PJD3_k127_5873553_3 PFAM DNA RNA tunnel of bacterial DNA dependent RNA polymerase - - - 0.0000000000000000000000000000000000000000000000000000003515 208.0
PJD3_k127_5873553_4 Protein of unknown function (DUF3048) C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000003202 216.0
PJD3_k127_5873553_5 Iron permease FTR1 family K07243 - - 0.000000000000000000000000000000000000000000000000002462 193.0
PJD3_k127_5873553_6 PFAM pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000000000000343 162.0
PJD3_k127_5873553_7 Pfam:Pyridox_oxidase - - - 0.0000000000000000000000000000001272 140.0
PJD3_k127_5873553_8 Phospholipid methyltransferase - - - 0.000000008777 66.0
PJD3_k127_5882063_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 388.0
PJD3_k127_5882063_1 Catalyzes the hydrolysis of methenyl-H(4)MPT( ) to 5- formyl-H(4)MPT K01499 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009987,GO:0015947,GO:0016787,GO:0016810,GO:0016814,GO:0018759,GO:0019238,GO:0043446,GO:0044237,GO:0044424,GO:0044464,GO:0071704 3.5.4.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 300.0
PJD3_k127_5882063_2 3-oxo-5-alpha-steroid 4-dehydrogenase K12343 - 1.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006398 276.0
PJD3_k127_5882063_3 Mannosyltransferase (PIG-V) - - - 0.0000000000000000000000000000000000000000007643 171.0
PJD3_k127_5889027_0 Hydantoinase B/oxoprolinase - - - 1.857e-302 947.0
PJD3_k127_5889027_1 PFAM Hydantoinase oxoprolinase - - - 2.04e-300 939.0
PJD3_k127_5889027_2 Hydantoinase/oxoprolinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002483 588.0
PJD3_k127_5889027_3 Acetone carboxylase gamma subunit - - - 0.000000000000000000000000000000000000000000004367 169.0
PJD3_k127_5889027_4 Alcohol dehydrogenase GroES-like domain K13951 GO:0000166,GO:0001101,GO:0001523,GO:0003674,GO:0003824,GO:0004022,GO:0004024,GO:0004031,GO:0004745,GO:0005102,GO:0005488,GO:0005501,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006066,GO:0006067,GO:0006068,GO:0006069,GO:0006081,GO:0006082,GO:0006091,GO:0006117,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0007275,GO:0007610,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0009056,GO:0009058,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010430,GO:0010469,GO:0010646,GO:0010648,GO:0010817,GO:0014070,GO:0016020,GO:0016101,GO:0016491,GO:0016614,GO:0016616,GO:0016623,GO:0016903,GO:0016999,GO:0017001,GO:0017144,GO:0019395,GO:0019752,GO:0019840,GO:0019841,GO:0019842,GO:0023051,GO:0023057,GO:0030258,GO:0030534,GO:0030545,GO:0030547,GO:0031099,GO:0031100,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032526,GO:0032570,GO:0032787,GO:0033574,GO:0033993,GO:0034308,GO:0034310,GO:0034440,GO:0034754,GO:0035276,GO:0036094,GO:0042221,GO:0042445,GO:0042493,GO:0042572,GO:0042573,GO:0042737,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043178,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046164,GO:0046184,GO:0046186,GO:0046677,GO:0046872,GO:0046914,GO:0046983,GO:0048019,GO:0048037,GO:0048149,GO:0048513,GO:0048519,GO:0048523,GO:0048545,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051287,GO:0051704,GO:0051707,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0097305,GO:0098772,GO:1900115,GO:1900116,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901654,GO:1901700,GO:2000272 1.1.1.1 0.00000000001194 78.0
PJD3_k127_5889027_5 Uroporphyrinogen decarboxylase K01599 - 4.1.1.37 0.0001761 52.0
PJD3_k127_5910504_0 Type II/IV secretion system protein K02283 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 531.0
PJD3_k127_5910504_1 PFAM Type II secretion system protein E K02454,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008333 470.0
PJD3_k127_5910504_10 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.000000000000000000000000000005838 135.0
PJD3_k127_5910504_11 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000006633 116.0
PJD3_k127_5910504_12 response regulator - - - 0.0000000000000000000000001107 111.0
PJD3_k127_5910504_13 Universal stress protein - - - 0.00000000000000000003763 97.0
PJD3_k127_5910504_14 Chorismate mutase K03856,K04092,K04093,K04516,K13853 - 2.5.1.54,5.4.99.5 0.000000000000000003708 88.0
PJD3_k127_5910504_15 Cytochrome c K00406 - - 0.0000000000189 71.0
PJD3_k127_5910504_16 Pilus assembly protein CpaB K02279 - - 0.00000000005559 73.0
PJD3_k127_5910504_17 Rna-binding protein - - - 0.000000005287 59.0
PJD3_k127_5910504_18 PFAM TadE family protein K12513 - - 0.00000001946 62.0
PJD3_k127_5910504_2 Twitching motility protein PilT K02669 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005088 391.0
PJD3_k127_5910504_20 Putative Flp pilus-assembly TadE/G-like - - - 0.0000000902 65.0
PJD3_k127_5910504_3 GAF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000001906 250.0
PJD3_k127_5910504_4 PFAM peptidase, membrane zinc metallopeptidase K06973 - - 0.00000000000000000000000000000000000000000000000000000000000000002368 233.0
PJD3_k127_5910504_5 NUBPL iron-transfer P-loop NTPase K02282 - - 0.00000000000000000000000000000000000000000000000000000000004256 223.0
PJD3_k127_5910504_6 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000000002353 230.0
PJD3_k127_5910504_7 Bifunctional nuclease K08999 - - 0.0000000000000000000000000000000000000000000000000000000132 201.0
PJD3_k127_5910504_8 Type ii secretion system K12511 - - 0.0000000000000000000000000000000000000000000000000001073 201.0
PJD3_k127_5910504_9 Thioredoxin-like domain K03671 - - 0.000000000000000000000000000001013 131.0
PJD3_k127_5918465_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1100.0
PJD3_k127_5918465_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 3.61e-279 882.0
PJD3_k127_5918465_10 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 390.0
PJD3_k127_5918465_11 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 374.0
PJD3_k127_5918465_12 Drug exporters of the RND superfamily K06994,K07003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 361.0
PJD3_k127_5918465_13 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009055 352.0
PJD3_k127_5918465_14 endonuclease III K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 305.0
PJD3_k127_5918465_15 Pyruvate phosphate dikinase, PEP pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000577 306.0
PJD3_k127_5918465_16 Thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000003096 210.0
PJD3_k127_5918465_17 Putative TM nitroreductase - - - 0.000000000000000000000000000000000000000000000000002538 192.0
PJD3_k127_5918465_18 HxlR-like helix-turn-helix - - - 0.00000000000000000000000000000000001447 143.0
PJD3_k127_5918465_19 acyl-phosphate glycerol-3-phosphate acyltransferase activity K08591 - 2.3.1.15 0.00000000000000000000000000006622 126.0
PJD3_k127_5918465_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 584.0
PJD3_k127_5918465_20 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000264 106.0
PJD3_k127_5918465_21 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000009413 111.0
PJD3_k127_5918465_22 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.000000000000000000001057 101.0
PJD3_k127_5918465_23 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000004468 92.0
PJD3_k127_5918465_24 Major facilitator Superfamily - - - 0.000000000009173 77.0
PJD3_k127_5918465_25 - - - - 0.000000005646 68.0
PJD3_k127_5918465_26 Putative redox-active protein (C_GCAxxG_C_C) - - - 0.0000008828 58.0
PJD3_k127_5918465_27 Pfam:DUF1049 - - - 0.00004955 49.0
PJD3_k127_5918465_3 AIR synthase related protein, N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 554.0
PJD3_k127_5918465_4 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 512.0
PJD3_k127_5918465_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002563 494.0
PJD3_k127_5918465_6 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002111 467.0
PJD3_k127_5918465_7 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 435.0
PJD3_k127_5918465_8 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 432.0
PJD3_k127_5918465_9 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003552 410.0
PJD3_k127_5924512_0 SMART Elongator protein 3 MiaB NifB K04034 - 1.21.98.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004291 549.0
PJD3_k127_5924512_1 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002332 314.0
PJD3_k127_5924512_2 NHL repeat K13730 - - 0.0000000000000000000006634 109.0
PJD3_k127_5924512_3 PRC-barrel domain - - - 0.00000000000000002068 94.0
PJD3_k127_5924512_4 PRC-barrel domain - - - 0.00000000000716 72.0
PJD3_k127_5924512_5 Bacterial Ig-like domain (group 4) - - - 0.0006301 51.0
PJD3_k127_5924512_6 Tetratricopeptide repeat - - - 0.0007086 50.0
PJD3_k127_5927268_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 1.207e-248 804.0
PJD3_k127_5927268_1 DEAD DEAH box helicase domain protein K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000239 390.0
PJD3_k127_5927268_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000001209 158.0
PJD3_k127_5927268_3 MarR family - - - 0.0000000000000000000000000000000003447 139.0
PJD3_k127_5927268_4 RNA-binding protein - - - 0.000000000000000000000006108 106.0
PJD3_k127_5927268_5 Uncharacterised protein family UPF0066 - - - 0.0003142 52.0
PJD3_k127_5967964_0 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K07540,K18427 - 2.3.1.54,4.1.1.83,4.1.99.11 2.837e-241 761.0
PJD3_k127_5967964_1 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 3.277e-196 626.0
PJD3_k127_5967964_10 Bacterial extracellular solute-binding protein, family 7 - - - 0.000000000000000000000000000000000000000000000000000003558 204.0
PJD3_k127_5967964_11 UTRA K03710 - - 0.000000000000000000000000000000000000000004641 164.0
PJD3_k127_5967964_12 Bacterial extracellular solute-binding proteins, family 3 K02030 - - 0.00000000007519 67.0
PJD3_k127_5967964_13 Tripartite ATP-independent periplasmic transporter DctQ component - - - 0.000005756 55.0
PJD3_k127_5967964_2 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006417 575.0
PJD3_k127_5967964_3 Capsule synthesis protein K07282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006758 543.0
PJD3_k127_5967964_4 COG1593 TRAP-type C4-dicarboxylate transport system, large permease component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 484.0
PJD3_k127_5967964_5 enzyme of poly-gamma-glutamate biosynthesis (Capsule formation) K07282 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 461.0
PJD3_k127_5967964_6 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000739 402.0
PJD3_k127_5967964_7 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001968 401.0
PJD3_k127_5967964_8 MmgE/PrpD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 404.0
PJD3_k127_5967964_9 ABC transporter, ATP-binding protein K02028 - 3.6.3.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009049 374.0
PJD3_k127_5998707_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 514.0
PJD3_k127_5998707_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 390.0
PJD3_k127_5998707_10 - - - - 0.00000001525 57.0
PJD3_k127_5998707_2 Binding-protein-dependent transport system inner membrane component K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003006 276.0
PJD3_k127_5998707_3 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003594 270.0
PJD3_k127_5998707_4 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000003737 199.0
PJD3_k127_5998707_5 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000002441 167.0
PJD3_k127_5998707_6 NLP P60 protein K21471 - - 0.00000000000000000000000000000000001013 152.0
PJD3_k127_5998707_7 PFAM Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 0.0000000000000000000000000001861 126.0
PJD3_k127_5998707_8 PFAM nitrogen-fixing NifU domain protein - - - 0.000000000000000000000000236 107.0
PJD3_k127_5998707_9 - - - - 0.0000000000000001123 87.0
PJD3_k127_6044068_0 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000004877 263.0
PJD3_k127_6044068_1 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.00000000000000000000000000000000000000000000000000001203 199.0
PJD3_k127_6044068_2 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000004643 82.0
PJD3_k127_6044068_3 TrkA-N domain K03499 - - 0.00000000000004111 75.0
PJD3_k127_6044068_4 DGC domain - - - 0.0000000001099 70.0
PJD3_k127_6044068_5 DGC domain - - - 0.00000000178 66.0
PJD3_k127_6093215_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1024.0
PJD3_k127_6093215_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 1.082e-256 812.0
PJD3_k127_6093215_10 TIGRFAM N5-methyltetrahydromethanopterin coenzyme M methyltransferase subunit H K00584 - 2.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 325.0
PJD3_k127_6093215_11 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004971 307.0
PJD3_k127_6093215_12 Cellulose biosynthesis protein BcsQ K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006383 288.0
PJD3_k127_6093215_13 von Willebrand factor (vWF) type A domain K02448 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006378 282.0
PJD3_k127_6093215_14 Metal dependent phosphohydrolases with conserved 'HD' motif. K09163 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003082 258.0
PJD3_k127_6093215_15 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.000000000000000000000000000000000000000000000000000000000009906 224.0
PJD3_k127_6093215_16 cobalamin synthesis protein - - - 0.00000000000000000000000000000000000000000000000000000005406 202.0
PJD3_k127_6093215_17 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000001092 199.0
PJD3_k127_6093215_18 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000002886 202.0
PJD3_k127_6093215_19 60Kd inner membrane protein K03217 - - 0.000000000000000000000000000000000000000000000000005909 191.0
PJD3_k127_6093215_2 PFAM 2Fe-2S iron-sulfur cluster binding domain - - - 3.627e-240 762.0
PJD3_k127_6093215_20 TIGRFAM iron-sulfur cluster binding protein - - - 0.0000000000000000000000000000000000000000002718 169.0
PJD3_k127_6093215_21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000002718 168.0
PJD3_k127_6093215_23 Specifically methylates the N7 position of guanine in position 535 of 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.0000000000000000000000000000000000001062 152.0
PJD3_k127_6093215_24 FCD K05799 - - 0.000000000000000000000000000000000003103 148.0
PJD3_k127_6093215_25 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000001415 123.0
PJD3_k127_6093215_26 RNA-binding protein K06346 - - 0.0000000000000000000000000004422 124.0
PJD3_k127_6093215_27 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000000000006866 106.0
PJD3_k127_6093215_28 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000008563 94.0
PJD3_k127_6093215_29 Protein of unknown function (DUF541) K09807 GO:0000302,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0031233,GO:0033554,GO:0034599,GO:0034605,GO:0034614,GO:0042221,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071575,GO:0071944,GO:0098552,GO:1901700,GO:1901701 - 0.0000000000000002837 89.0
PJD3_k127_6093215_3 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 7.554e-201 650.0
PJD3_k127_6093215_30 Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily K03976 - - 0.000000000000002934 82.0
PJD3_k127_6093215_31 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.000000000002084 67.0
PJD3_k127_6093215_32 S4 domain protein K14761 - - 0.00000000002068 67.0
PJD3_k127_6093215_33 GidA associated domain 3 K03495 - - 0.0000000008279 71.0
PJD3_k127_6093215_34 RNA-binding protein - - - 0.00000003409 63.0
PJD3_k127_6093215_35 cobalamin synthesis protein - - - 0.0000001042 59.0
PJD3_k127_6093215_36 aminopeptidase N - - - 0.000001286 61.0
PJD3_k127_6093215_37 Roadblock LC7 K07131 - - 0.000009667 55.0
PJD3_k127_6093215_39 cobalamin synthesis protein P47K - - - 0.0001911 49.0
PJD3_k127_6093215_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000503 449.0
PJD3_k127_6093215_5 Uroporphyrinogen decarboxylase K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 383.0
PJD3_k127_6093215_6 Associated with various cellular activities K04748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 381.0
PJD3_k127_6093215_7 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 377.0
PJD3_k127_6093215_8 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007951 346.0
PJD3_k127_6093215_9 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599,K14080,K14082 - 2.1.1.246,2.1.1.247,4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 344.0
PJD3_k127_6140888_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 1.056e-238 792.0
PJD3_k127_6140888_1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 1.411e-236 745.0
PJD3_k127_6140888_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003315 265.0
PJD3_k127_6140888_11 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000002287 233.0
PJD3_k127_6140888_12 FMN-dependent dehydrogenase K01823 - 5.3.3.2 0.00000000000000000000000000000000000000000000000000000000000000002001 244.0
PJD3_k127_6140888_13 PFAM pyruvate ferredoxin flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000007294 215.0
PJD3_k127_6140888_14 TIGRFAM SagB-type dehydrogenase domain - - - 0.0000000000000000000000000000000000000000000000000000000007545 213.0
PJD3_k127_6140888_15 NUDIX domain - - - 0.0000000000000000000000000000000000000001379 164.0
PJD3_k127_6140888_16 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.00000000000000000000000000000000000001821 155.0
PJD3_k127_6140888_17 transmembrane transport K01992 - - 0.00000000000000000000000000003311 135.0
PJD3_k127_6140888_18 TIGRFAM 6-phosphogluconate dehydrogenase, decarboxylating K00033 - 1.1.1.343,1.1.1.44 0.0000000000000000000000005055 104.0
PJD3_k127_6140888_19 Domain of unknown function DUF120 K01091 - 3.1.3.18 0.000000000000000000347 102.0
PJD3_k127_6140888_2 PEP-utilising enzyme, mobile domain K01007 - 2.7.9.2 3.996e-198 623.0
PJD3_k127_6140888_3 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 580.0
PJD3_k127_6140888_4 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 437.0
PJD3_k127_6140888_5 Aminotransferase K00812,K22457 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769,GO:0047297 2.6.1.1,2.6.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 425.0
PJD3_k127_6140888_6 Hemolysins and related proteins containing CBS domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006048 382.0
PJD3_k127_6140888_7 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074,K15016 - 1.1.1.157,1.1.1.35,4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 359.0
PJD3_k127_6140888_8 ATPases associated with a variety of cellular activities K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 344.0
PJD3_k127_6140888_9 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006661 296.0
PJD3_k127_6163749_0 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 326.0
PJD3_k127_6163749_1 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000000000003763 169.0
PJD3_k127_6163749_2 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000007411 142.0
PJD3_k127_6163749_3 CAAX protease self-immunity K07052 - - 0.00000000000001587 82.0
PJD3_k127_6163749_4 Glycosyltransferases involved in cell wall biogenesis-like protein - - - 0.0000000000009821 77.0
PJD3_k127_6180978_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003346 434.0
PJD3_k127_6180978_1 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 365.0
PJD3_k127_6180978_2 Belongs to the TrpC family K01609,K13498 - 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000006831 248.0
PJD3_k127_6180978_3 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000001066 255.0
PJD3_k127_6180978_4 Peptidase M6, immune inhibitor A K09607 - - 0.000000000000000000000000000000000000000000000000005717 185.0
PJD3_k127_6180978_5 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000002943 137.0
PJD3_k127_6180978_6 Acetyltransferase (GNAT) domain K15520 - 2.3.1.189 0.000000000000000000000000176 118.0
PJD3_k127_6182784_0 ubiE/COQ5 methyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008036 480.0
PJD3_k127_6182784_1 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 488.0
PJD3_k127_6182784_10 Domain of unknown function (DUF4445) - - - 0.00000001203 56.0
PJD3_k127_6182784_12 SnoaL-like polyketide cyclase - - - 0.0009359 48.0
PJD3_k127_6182784_2 hydrolase activity, acting on ester bonds - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003398 430.0
PJD3_k127_6182784_3 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000527 274.0
PJD3_k127_6182784_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000002022 233.0
PJD3_k127_6182784_5 PFAM Integral membrane protein TerC - - - 0.000000000000000000000000000000000000000000000000000000000002499 218.0
PJD3_k127_6182784_6 - - - - 0.0000000000000000000000000000000000005793 153.0
PJD3_k127_6182784_7 - - - - 0.0000000000000000000000000000000001695 148.0
PJD3_k127_6182784_8 - - - - 0.00000000000000000000000001944 115.0
PJD3_k127_6182784_9 Glyoxalase-like domain K06996 - - 0.000000000000003352 81.0
PJD3_k127_6388869_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001436 263.0
PJD3_k127_6388869_1 PFAM Uncharacterised protein family UPF0157 - - - 0.00000000000000000000000000000000000000000000000000000000003845 210.0
PJD3_k127_6388869_2 metal cluster binding K06940 - - 0.0000000000000000000000000000000000000000000000000001726 195.0
PJD3_k127_6388869_3 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000006622 181.0
PJD3_k127_6388869_4 ABC-2 family transporter protein K01992 - - 0.00000000000000000000006459 113.0
PJD3_k127_6388869_5 - - - - 0.000000000000000003736 89.0
PJD3_k127_6401184_0 TIGRFAM Carbon-monoxide dehydrogenase, catalytic subunit K00198 - 1.2.7.4 1.525e-219 699.0
PJD3_k127_6401184_1 PFAM CO dehydrogenase acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 336.0
PJD3_k127_6401184_2 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 0.00000000000000000000000000000000000000006323 155.0
PJD3_k127_6401184_3 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000002999 63.0
PJD3_k127_6444692_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000314 516.0
PJD3_k127_6444692_1 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006876 278.0
PJD3_k127_6444692_2 pfam abc K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006489 267.0
PJD3_k127_6444692_3 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002207 264.0
PJD3_k127_6444692_4 Branched-chain amino acid transport system / permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001473 269.0
PJD3_k127_6444692_5 Belongs to the binding-protein-dependent transport system permease family K11960 - - 0.00000000000000000000000000000000000000000000000000000000000000000002026 243.0
PJD3_k127_646913_0 Amidase K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 528.0
PJD3_k127_646913_1 imidazolonepropionase activity K15358 - 3.5.2.18 0.000000000000000000000000000000000000000000000000000000001767 218.0
PJD3_k127_646913_2 Acetyltransferase (Isoleucine patch superfamily) K00661 - 2.3.1.79 0.0000000000000000000000000000000000000000000000000000001217 200.0
PJD3_k127_646913_3 NUDIX domain K03574 - 3.6.1.55 0.00000000000000000000000000000000000000000000000002112 187.0
PJD3_k127_646913_4 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000001401 111.0
PJD3_k127_646913_5 SnoaL-like domain - - - 0.0000000000000000000004595 102.0
PJD3_k127_646913_6 transglutaminase - - - 0.00000000000000000000986 106.0
PJD3_k127_646913_7 Domain of unknown function (DU1801) K05937 - - 0.00000000002089 68.0
PJD3_k127_6474372_0 Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming K01940 GO:0000050,GO:0000053,GO:0003674,GO:0003824,GO:0004055,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006575,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:0072350,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 479.0
PJD3_k127_6474372_1 Argininosuccinate lyase C-terminal K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009055 397.0
PJD3_k127_6474372_2 acetylornithine aminotransferase K00821 GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0008150,GO:0019842,GO:0030170,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 329.0
PJD3_k127_6474372_3 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0040007,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004696 311.0
PJD3_k127_6474372_4 Belongs to the DNA glycosylase MPG family K03652 GO:0003674,GO:0003824,GO:0003905,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.2.2.21 0.00000000000000000000000000000000000007183 153.0
PJD3_k127_6474372_5 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000001051 118.0
PJD3_k127_6474372_6 PFAM NIF3 (NGG1p interacting factor 3) - - - 0.000000000000000000000000003845 112.0
PJD3_k127_6474372_7 Regulates arginine biosynthesis genes K03402 - - 0.0000000000000000000003369 101.0
PJD3_k127_654001_0 carboxylase, biotin carboxylase K01961,K01965,K01968,K11263 - 6.3.4.14,6.4.1.2,6.4.1.3,6.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005487 544.0
PJD3_k127_654001_1 CoA carboxylase activity K01966 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016421,GO:0016874,GO:0016885,GO:0019752,GO:0031974,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0070013,GO:0071704,GO:0072329,GO:1901575 2.1.3.15,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 337.0
PJD3_k127_654001_2 helix_turn_helix ASNC type K03718 - - 0.00000000000000000007047 94.0
PJD3_k127_654001_3 Biotin-requiring enzyme - - - 0.000000000000000000236 99.0
PJD3_k127_654001_4 Saccharopine dehydrogenase K00290 - 1.5.1.7 0.00000000004234 68.0
PJD3_k127_663833_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 4.385e-195 623.0
PJD3_k127_663833_1 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008361 569.0
PJD3_k127_663833_10 beta-glucosidase activity K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005396 345.0
PJD3_k127_663833_11 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006428 355.0
PJD3_k127_663833_12 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K01008,K04487 - 2.7.9.3,2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 326.0
PJD3_k127_663833_13 Part of an ABC transporter complex. Responsible for energy coupling to the transport system K02006,K02008 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 316.0
PJD3_k127_663833_14 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 316.0
PJD3_k127_663833_15 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009309 301.0
PJD3_k127_663833_16 nitrite reductase (NAD(P)H) large subunit K00362 - 1.7.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000004632 275.0
PJD3_k127_663833_17 Belongs to the dCTP deaminase family K01494 GO:0003674,GO:0003824,GO:0004170,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0019239,GO:0033973,GO:0047429 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000002928 253.0
PJD3_k127_663833_18 ADP-ribosylation Crystallin J1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001487 254.0
PJD3_k127_663833_19 COG1007 NADH ubiquinone oxidoreductase subunit 2 (chain N) K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000004422 258.0
PJD3_k127_663833_2 belongs to the aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003633 532.0
PJD3_k127_663833_20 Glycosyl transferase family 21 K00720 - 2.4.1.80 0.000000000000000000000000000000000000000000000000000000000000001251 234.0
PJD3_k127_663833_21 PFAM cobalamin (vitamin B12) biosynthesis CbiM protein K02007 - - 0.000000000000000000000000000000000000000000000000000000000000004784 235.0
PJD3_k127_663833_22 Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000002798 223.0
PJD3_k127_663833_23 4Fe-4S ferredoxin iron-sulfur binding domain K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000003827 209.0
PJD3_k127_663833_24 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000005985 203.0
PJD3_k127_663833_25 Cobalt transport protein K02008 - - 0.00000000000000000000000000000000000000000000008902 178.0
PJD3_k127_663833_26 PFAM NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000001932 165.0
PJD3_k127_663833_27 PFAM Rubrerythrin - - - 0.00000000000000000000000000000000000000001115 160.0
PJD3_k127_663833_28 PFAM O-methyltransferase family 2 - - - 0.0000000000000000000000000000000000000001664 163.0
PJD3_k127_663833_29 heme binding K21471,K21472 - - 0.0000000000000000000000000009775 128.0
PJD3_k127_663833_3 PFAM amidohydrolase K01464 - 3.5.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 532.0
PJD3_k127_663833_30 Transcriptional regulator - - - 0.000000000000000000000000522 115.0
PJD3_k127_663833_31 Belongs to the Fur family K03711 - - 0.000000000000000000000006174 109.0
PJD3_k127_663833_32 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000001309 105.0
PJD3_k127_663833_33 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000002905 102.0
PJD3_k127_663833_34 PspC domain K03973 - - 0.000000000000000000062 93.0
PJD3_k127_663833_35 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.00000000000000005141 86.0
PJD3_k127_663833_36 Anti-sigma regulatory factor (Ser Thr protein kinase) K04757 - 2.7.11.1 0.0000000000004222 76.0
PJD3_k127_663833_37 Protein of unknown function (DUF2769) - - - 0.00000000003554 65.0
PJD3_k127_663833_38 Belongs to the anti-sigma-factor antagonist family K06378 - - 0.00000001289 67.0
PJD3_k127_663833_39 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000001687 63.0
PJD3_k127_663833_4 Subunit A of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 467.0
PJD3_k127_663833_40 Bacterial transcription activator, effector binding domain K13652 - - 0.000004146 59.0
PJD3_k127_663833_41 glutaredoxin-like protein, YruB-family - - - 0.000005756 52.0
PJD3_k127_663833_43 Rhodanese Homology Domain - - - 0.000134 44.0
PJD3_k127_663833_44 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.0002417 50.0
PJD3_k127_663833_45 - - - - 0.0006586 51.0
PJD3_k127_663833_5 flavodoxin nitric oxide synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 423.0
PJD3_k127_663833_6 TIGRFAM drug resistance transporter, EmrB QacA subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 426.0
PJD3_k127_663833_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333,K13378 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 394.0
PJD3_k127_663833_8 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004909 386.0
PJD3_k127_663833_9 TIGRFAM dihydroorotate dehydrogenase family protein K17723 - 1.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 365.0
PJD3_k127_670788_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 1.914e-286 891.0
PJD3_k127_670788_1 exonuclease of the beta-lactamase fold involved in RNA processing - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005668 503.0
PJD3_k127_670788_2 Acetylornithine deacetylase K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 429.0
PJD3_k127_670788_3 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 423.0
PJD3_k127_670788_4 dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003728 367.0
PJD3_k127_670788_5 YHS domain K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000005452 270.0
PJD3_k127_670788_6 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005322 253.0
PJD3_k127_670788_7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 - 2.3.1.12 0.00000000000001805 84.0
PJD3_k127_684978_0 Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 325.0
PJD3_k127_684978_1 histidine kinase HAMP region domain protein K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001115 303.0
PJD3_k127_684978_2 Response regulator receiver K07776 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009405,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0031323,GO:0031326,GO:0044419,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0080090,GO:0080134,GO:0097159,GO:1901363,GO:1902882,GO:1903506,GO:2000112,GO:2001141 - 0.000000000000000000000000000000000000000004059 169.0
PJD3_k127_70432_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.0 1042.0
PJD3_k127_70432_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01907 - 6.2.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 582.0
PJD3_k127_70432_2 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002736 353.0
PJD3_k127_70432_3 xanthine dehydrogenase activity K11178 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016903,GO:0036094,GO:0042597,GO:0043167,GO:0043168,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.17.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 326.0
PJD3_k127_70432_4 aerobic-type carbon monoxide dehydrogenase, small subunit CoxS K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000005577 223.0
PJD3_k127_70432_5 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.000000000000000000000000000000000000000000000000000000006093 204.0
PJD3_k127_70432_6 - - - - 0.000000000001867 73.0
PJD3_k127_736419_0 peptidase M42 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 452.0
PJD3_k127_736419_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 333.0
PJD3_k127_736419_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003022 263.0
PJD3_k127_736419_3 3-hydroxyacyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000002204 221.0
PJD3_k127_741308_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1094.0
PJD3_k127_741308_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003927 435.0
PJD3_k127_741308_10 PFAM metallophosphoesterase K07098 - - 0.000000000000000000000000005799 127.0
PJD3_k127_741308_11 Cupin domain - - - 0.0000000000001637 82.0
PJD3_k127_741308_12 DNA-binding transcription factor activity - - - 0.000000000002958 74.0
PJD3_k127_741308_13 Cupin domain - - - 0.000009647 57.0
PJD3_k127_741308_14 - - - - 0.00001818 54.0
PJD3_k127_741308_2 Elongation factor SelB, winged helix K03833 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 444.0
PJD3_k127_741308_3 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 413.0
PJD3_k127_741308_4 Zinc-binding dehydrogenase K00008 - 1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 340.0
PJD3_k127_741308_5 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 294.0
PJD3_k127_741308_6 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000000000004174 193.0
PJD3_k127_741308_7 glyoxalase III activity - - - 0.0000000000000000000000000000000000000271 156.0
PJD3_k127_741308_8 Glucose dehydrogenase C-terminus K00008 - 1.1.1.14 0.0000000000000000000000000000000000001513 155.0
PJD3_k127_741308_9 Inositol monophosphatase family K01092 - 3.1.3.25 0.00000000000000000000000000000205 132.0
PJD3_k127_752593_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.377e-221 716.0
PJD3_k127_752593_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 5.23e-216 685.0
PJD3_k127_752593_2 General secretory system II, protein E domain protein K02652 - - 7.382e-199 638.0
PJD3_k127_752593_3 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 493.0
PJD3_k127_752593_4 tRNA synthetase class II core domain (G, H, P, S and T) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006592 430.0
PJD3_k127_752593_5 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 353.0
PJD3_k127_752593_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000006003 248.0
PJD3_k127_752593_7 RNA polymerase sigma K03090 GO:0000988,GO:0000990,GO:0003674,GO:0005488,GO:0005515,GO:0006355,GO:0006629,GO:0006950,GO:0006979,GO:0006995,GO:0007154,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016987,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034059,GO:0036293,GO:0042221,GO:0042594,GO:0043175,GO:0043254,GO:0043562,GO:0044087,GO:0044238,GO:0045893,GO:0045935,GO:0046677,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070063,GO:0070417,GO:0070482,GO:0071496,GO:0071704,GO:0080090,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000006848 244.0
PJD3_k127_752593_8 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000003496 225.0
PJD3_k127_752593_9 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000522 108.0
PJD3_k127_808043_0 PFAM glycosyl transferase group 1 K12995,K13668 - 2.4.1.346,2.4.1.348 0.000000000000000000000000000000000000000000000000000000000000000000000002338 258.0
PJD3_k127_808043_1 response regulator containing a CheY-like receiver domain and a GGDEF domain K02488 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65 0.000000000000000000000000000000002659 141.0
PJD3_k127_809775_0 FAD dependent oxidoreductase K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0 1541.0
PJD3_k127_809775_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.0 1046.0
PJD3_k127_809775_10 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001574 251.0
PJD3_k127_809775_11 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000002188 241.0
PJD3_k127_809775_12 N-formylglutamate amidohydrolase K01458,K01479 - 3.5.1.68,3.5.3.8 0.000000000000000000000000000000000000000000000000000000000000000003906 236.0
PJD3_k127_809775_13 Protein of unknown function (DUF2089) - - - 0.0000000000000000000000000000000008321 134.0
PJD3_k127_809775_14 - - - - 0.00000000000000000000005939 108.0
PJD3_k127_809775_15 response to heat K07090 - - 0.00000000000000001537 89.0
PJD3_k127_809775_16 membrane transporter protein K07090 - - 0.0000000000004392 80.0
PJD3_k127_809775_17 Cytochrome bd terminal oxidase subunit II K00426 - 1.10.3.14 0.0000000000168 69.0
PJD3_k127_809775_18 - - - - 0.00003369 54.0
PJD3_k127_809775_2 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K05587,K18331 - 1.12.1.3,1.6.5.3 1.035e-314 975.0
PJD3_k127_809775_3 Belongs to the D-alanine--D-alanine ligase family K01921 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008716,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.4 2.928e-258 814.0
PJD3_k127_809775_4 PFAM Gamma-glutamyltranspeptidase - - - 1.076e-205 653.0
PJD3_k127_809775_5 Cysteine-rich domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 579.0
PJD3_k127_809775_6 Cytochrome bd terminal oxidase subunit I K00425 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 471.0
PJD3_k127_809775_7 PFAM methyl-viologen-reducing hydrogenase delta subunit K14127 - 1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 336.0
PJD3_k127_809775_8 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 323.0
PJD3_k127_809775_9 2Fe-2S iron-sulfur cluster binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001286 288.0
PJD3_k127_865153_0 AzlC family - - - 0.0000000000000000000000000000000000000000002171 168.0
PJD3_k127_865153_1 Sensor protein DegS K07777 - 2.7.13.3 0.000000000000000000000001508 117.0
PJD3_k127_865153_2 Branched-chain amino acid transport protein (AzlD) - - - 0.00000000000000153 87.0
PJD3_k127_870867_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006413 337.0
PJD3_k127_870867_1 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 315.0
PJD3_k127_870867_2 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001012 289.0
PJD3_k127_870867_3 PFAM ABC transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004104 271.0
PJD3_k127_870867_4 PFAM ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002274 264.0
PJD3_k127_875480_0 ATPase BadF BadG BcrA BcrD type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 433.0
PJD3_k127_875480_1 MMPL family K06994 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006057 417.0
PJD3_k127_875480_2 4 iron, 4 sulfur cluster binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 380.0
PJD3_k127_875480_3 Pterin binding enzyme K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005218 354.0
PJD3_k127_875480_4 Glutamate formiminotransferase K00603 - 2.1.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 332.0
PJD3_k127_875480_5 B12 binding domain - - - 0.0000000000000000000000000000000000000000000000001444 184.0
PJD3_k127_875480_6 UTRA K03710 - - 0.0000000000000000000000000000000000000000000000002813 185.0
PJD3_k127_875480_7 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.0000000000000000000000000000000000000005434 153.0
PJD3_k127_875480_8 COG3404 Methenyl tetrahydrofolate cyclohydrolase - - - 0.000000000000000000000000000000991 135.0
PJD3_k127_897771_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K16881 - 2.7.7.13,5.4.2.8 9.518e-210 679.0
PJD3_k127_897771_1 tRNA nucleotidyltransferase poly(A) polymerase K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001716 494.0
PJD3_k127_897771_10 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000003973 248.0
PJD3_k127_897771_11 RNA pseudouridylate synthase K06178,K06183 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.19,5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000001009 239.0
PJD3_k127_897771_12 VanW like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000005513 246.0
PJD3_k127_897771_13 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000007298 210.0
PJD3_k127_897771_14 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K13799 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25,6.3.2.1 0.000000000000000000000000000000000000000000000000000000009683 205.0
PJD3_k127_897771_15 sigma-70 region 3 sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2 K03090 - - 0.000000000000000000000000000000000000000000000001808 185.0
PJD3_k127_897771_16 PFAM peptidase M50 - - - 0.0000000000000000000000000000000000000000000001091 175.0
PJD3_k127_897771_17 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000000002008 170.0
PJD3_k127_897771_18 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000001319 167.0
PJD3_k127_897771_19 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000004543 159.0
PJD3_k127_897771_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 443.0
PJD3_k127_897771_20 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000000000000000001656 149.0
PJD3_k127_897771_21 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000002635 150.0
PJD3_k127_897771_22 Forkhead associated domain - - - 0.000000000000000000000000000000000006104 145.0
PJD3_k127_897771_23 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000001322 134.0
PJD3_k127_897771_24 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:1901576 2.7.8.5 0.0000000000000000001673 95.0
PJD3_k127_897771_25 PFAM Roadblock LC7 - - - 0.00000000000000001158 93.0
PJD3_k127_897771_26 - - - - 0.0000000001035 67.0
PJD3_k127_897771_28 response regulator, receiver - - - 0.00009791 50.0
PJD3_k127_897771_3 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000596 405.0
PJD3_k127_897771_4 COG COG1459 Type II secretory pathway component PulF Cell motility and secretion Intracellular trafficking and secretion K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 369.0
PJD3_k127_897771_5 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003208 373.0
PJD3_k127_897771_6 Glycerol-3-phosphate dehydrogenase K00057 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001129 289.0
PJD3_k127_897771_7 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002597 281.0
PJD3_k127_897771_8 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002737 278.0
PJD3_k127_897771_9 ADP-ribosylation factor family K06883 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001042 249.0
PJD3_k127_900899_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 3.278e-210 671.0
PJD3_k127_900899_1 CoA-transferase family III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007127 501.0
PJD3_k127_900899_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000434 202.0
PJD3_k127_900899_11 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000000000000000000000000000000000000000000017 183.0
PJD3_k127_900899_12 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000003351 183.0
PJD3_k127_900899_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000003255 142.0
PJD3_k127_900899_14 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000001836 142.0
PJD3_k127_900899_15 Methyltransferase type 11 - - - 0.000000000000000000000000000001156 140.0
PJD3_k127_900899_16 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K03855 - - 0.000000000000000000000000000003522 123.0
PJD3_k127_900899_17 TIGRFAM Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily - - - 0.0000000000000000000000000000327 134.0
PJD3_k127_900899_18 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000005385 120.0
PJD3_k127_900899_19 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000001979 111.0
PJD3_k127_900899_2 FAD dependent oxidoreductase K00313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 450.0
PJD3_k127_900899_20 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000006979 111.0
PJD3_k127_900899_21 FCD - - - 0.000000000000000000001763 109.0
PJD3_k127_900899_22 Domain of unknown function (DUF3870) - - - 0.00000000000002776 77.0
PJD3_k127_900899_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 423.0
PJD3_k127_900899_4 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007087 361.0
PJD3_k127_900899_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 337.0
PJD3_k127_900899_6 PFAM acyl-CoA dehydrogenase domain protein K00249 - 1.3.8.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 342.0
PJD3_k127_900899_7 SNARE associated Golgi protein K19302 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000006025 268.0
PJD3_k127_900899_8 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.000000000000000000000000000000000000000000000000000000000000001215 224.0
PJD3_k127_900899_9 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000002933 227.0
PJD3_k127_927267_0 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 423.0
PJD3_k127_927267_1 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain K17247 - - 0.00000000000000000000000000000000004435 142.0
PJD3_k127_927267_2 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00000000000000000000000000000001296 132.0
PJD3_k127_927267_3 - - - - 0.000000000002682 77.0
PJD3_k127_927267_4 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K01469,K01473,K10855 - 3.5.2.14,3.5.2.9,6.4.1.6 0.00000000004947 66.0
PJD3_k127_927267_5 - - - - 0.0000000001101 72.0
PJD3_k127_943199_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 9.095e-304 966.0
PJD3_k127_943199_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 608.0
PJD3_k127_943199_10 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000008567 58.0
PJD3_k127_943199_11 PFAM Polysaccharide deacetylase - - - 0.00001694 56.0
PJD3_k127_943199_12 Septum formation initiator K13052 - - 0.00004878 52.0
PJD3_k127_943199_13 - - - - 0.00007035 49.0
PJD3_k127_943199_2 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008369 441.0
PJD3_k127_943199_3 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 422.0
PJD3_k127_943199_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005772 365.0
PJD3_k127_943199_5 Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000000000000000000000000000002193 236.0
PJD3_k127_943199_6 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.0000000000000000000000000000000000000000000000000000000001554 215.0
PJD3_k127_943199_7 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0016787,GO:0016788,GO:0040007,GO:0044464,GO:0052689,GO:0071944,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000004408 175.0
PJD3_k127_943199_8 Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins K03769,K07533 - 5.2.1.8 0.00000000000000000000000000000000003572 148.0
PJD3_k127_943199_9 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000711 137.0
PJD3_k127_961667_0 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 1.156e-223 728.0
PJD3_k127_961667_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 368.0
PJD3_k127_961667_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 360.0
PJD3_k127_961667_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 329.0
PJD3_k127_961667_4 MmgE/PrpD family - - - 0.000002502 54.0
PJD3_k127_979616_0 Heat shock 70 kDa protein K04043 - - 1.227e-273 854.0
PJD3_k127_979616_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 3.906e-205 661.0
PJD3_k127_979616_10 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03753,K13818 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000003872 228.0
PJD3_k127_979616_11 Belongs to the ABC transporter superfamily K02010,K02052 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000668 217.0
PJD3_k127_979616_12 Probable molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000001769 190.0
PJD3_k127_979616_13 PFAM Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000000000004999 180.0
PJD3_k127_979616_14 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K01091,K06019 - 3.1.3.18,3.6.1.1 0.000000000000000000000000000000000000000000006431 184.0
PJD3_k127_979616_15 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000008212 144.0
PJD3_k127_979616_16 Sirohaem synthase dimerisation region K02304 - 1.3.1.76,4.99.1.4 0.000000000000000000000000000000000235 142.0
PJD3_k127_979616_17 MerR HTH family regulatory protein K13640 - - 0.0000000000000000000000000000000521 129.0
PJD3_k127_979616_18 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000139 114.0
PJD3_k127_979616_19 Uroporphyrin-III C-methyltransferase K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 0.000000000000000000004145 104.0
PJD3_k127_979616_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 380.0
PJD3_k127_979616_20 G5 - - - 0.000000000000000000007977 104.0
PJD3_k127_979616_21 Regulatory protein, FmdB family - - - 0.0000000000000003263 85.0
PJD3_k127_979616_22 photosynthesis - - - 0.00000000000002744 82.0
PJD3_k127_979616_23 Metallo-beta-lactamase superfamily - - - 0.000000000002353 77.0
PJD3_k127_979616_24 PFAM EAL domain - - - 0.00000000002647 76.0
PJD3_k127_979616_25 - - - - 0.000000008057 58.0
PJD3_k127_979616_26 Type ii secretion system protein e K02283 - - 0.00000001167 66.0
PJD3_k127_979616_3 glutamyl-tRNA reductase activity K02407,K02492 GO:0005575,GO:0005623,GO:0009288,GO:0042597,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0055040 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 372.0
PJD3_k127_979616_4 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 340.0
PJD3_k127_979616_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 332.0
PJD3_k127_979616_6 PFAM extracellular solute-binding protein family 1 K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002503 277.0
PJD3_k127_979616_7 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000165 282.0
PJD3_k127_979616_8 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000002107 234.0
PJD3_k127_979616_9 Binding-protein-dependent transport system inner membrane component K05773 - - 0.0000000000000000000000000000000000000000000000000000000000002542 219.0