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Overview

ID MAG02943
Name PJD3_bin.43
Sample SMP0069
Taxonomy
Kingdom Bacteria
Phylum Campylobacterota
Class Campylobacteria
Order Campylobacterales
Family Sulfurimonadaceae
Genus Sulfuricurvum
Species Sulfuricurvum kujiense_A
Assembly information
Completeness (%) 67.43
Contamination (%) 1.93
GC content (%) 44.0
N50 (bp) 6,244
Genome size (bp) 1,539,130

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1669

Gene name Description KEGG GOs EC E-value Score Sequence
PJD3_k127_106293_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169 - 1.2.7.1 1.786e-257 795.0
PJD3_k127_106293_1 pyruvate ferredoxin oxidoreductase K00170 - 1.2.7.1 1.32e-211 657.0
PJD3_k127_106293_2 pyruvate ferredoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 361.0
PJD3_k127_106293_3 Hydrolase K01091 - 3.1.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 341.0
PJD3_k127_106293_4 COG1070 Sugar (pentulose and hexulose) K11216 - 2.7.1.189 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003958 316.0
PJD3_k127_106293_5 pyruvate ferredoxin oxidoreductase K00171 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002606 271.0
PJD3_k127_106293_6 Abc transporter K02035 - - 0.00000000000000000000000000000000000000000000000000002175 188.0
PJD3_k127_1066962_0 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 287.0
PJD3_k127_1066962_1 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001491 280.0
PJD3_k127_1066962_2 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004401 252.0
PJD3_k127_1066962_3 chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000001643 208.0
PJD3_k127_1066962_4 Metallophosphoesterase K07098 - - 0.0000000000000000000000000000000000000354 145.0
PJD3_k127_1096545_0 membrane K15270 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 461.0
PJD3_k127_1096545_1 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000721 225.0
PJD3_k127_1116449_0 leucine binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 518.0
PJD3_k127_1116449_1 Ferritin K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008306 330.0
PJD3_k127_1116449_2 response to abiotic stimulus K01011,K06867 - 2.8.1.1,2.8.1.2 0.0000000000000000000000000000000000000000000000000000000000004977 213.0
PJD3_k127_1116449_3 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.000000000000000000000000000000000000000002448 155.0
PJD3_k127_1116449_4 Transcriptional regulator, Crp Fnr family - - - 0.0000000000000000000000000000006151 130.0
PJD3_k127_1116449_5 thioesterase K07107 - - 0.000001835 49.0
PJD3_k127_126012_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1808.0
PJD3_k127_126012_1 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 4.483e-301 928.0
PJD3_k127_126012_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 5.314e-277 853.0
PJD3_k127_126012_3 o-acetylhomoserine K01740 - 2.5.1.49 9.184e-253 782.0
PJD3_k127_126012_4 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 1.523e-238 738.0
PJD3_k127_12664_0 Membrane protease subunits - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 534.0
PJD3_k127_12664_1 Sulfatase-modifying factor enzyme 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 527.0
PJD3_k127_12664_4 Membrane protein implicated in regulation of membrane protease activity K07340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002057 251.0
PJD3_k127_12664_5 SEC-C motif K09858 - - 0.0000000000000000000000000000000000000000000000000000000000000005529 220.0
PJD3_k127_12664_6 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000001056 207.0
PJD3_k127_128608_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003021 412.0
PJD3_k127_128608_1 Signal transducing histidine kinase, homodimeric K03407 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 387.0
PJD3_k127_128608_2 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 303.0
PJD3_k127_128608_3 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000004056 273.0
PJD3_k127_128608_4 Response regulator receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000009489 200.0
PJD3_k127_128608_5 chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000001 195.0
PJD3_k127_128608_7 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000000000000000000000000005655 171.0
PJD3_k127_128608_8 Two component signalling adaptor domain K03408 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006935,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009893,GO:0009987,GO:0010604,GO:0016020,GO:0019222,GO:0019904,GO:0023052,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0040011,GO:0042221,GO:0042330,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0098561,GO:1901873,GO:1901875 - 0.000000000000000000000000000000001553 135.0
PJD3_k127_128608_9 methyl-accepting chemotaxis protein K03406,K05875 - - 0.0000000001218 66.0
PJD3_k127_12971_0 DNA polymerase K02337 - 2.7.7.7 0.0 1850.0
PJD3_k127_12971_1 Belongs to the UPF0178 family K09768 - - 0.00000000000000000000000000000000000000000000000000002175 188.0
PJD3_k127_12971_4 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.000000000000000000000000000000005425 129.0
PJD3_k127_12971_5 Putative addiction module component - - - 0.000000000000893 72.0
PJD3_k127_1343243_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.168e-219 682.0
PJD3_k127_1343243_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 462.0
PJD3_k127_1343243_2 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 445.0
PJD3_k127_1343243_3 Thioredoxin - - - 0.000000000000000001521 89.0
PJD3_k127_1347745_0 Belongs to the NiFe NiFeSe hydrogenase large subunit family K05922 - 1.12.5.1 0.0 1178.0
PJD3_k127_1347745_1 Small subunit K05927 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.12.5.1 1.125e-202 632.0
PJD3_k127_1347745_2 Ni Fe-hydrogenase, b-type cytochrome subunit K03620 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 456.0
PJD3_k127_1347745_3 HypF finger - - - 0.0000000000657 63.0
PJD3_k127_138771_0 PFAM GGDEF domain containing protein - - - 0.0 1182.0
PJD3_k127_138771_1 SMART GGDEF domain containing protein - - - 1.468e-287 890.0
PJD3_k127_138771_10 - - - - 0.000000000000000000000000000000000000000000000000000004824 192.0
PJD3_k127_138771_11 granule-associated protein - - - 0.0000000000000000000000000000000000000008453 148.0
PJD3_k127_138771_12 diguanylate cyclase K13246 - 3.1.4.52 0.0000000000000000000000000997 107.0
PJD3_k127_138771_2 ABC1 family - - - 7.023e-277 857.0
PJD3_k127_138771_3 Diguanylate cyclase - - - 2.215e-233 726.0
PJD3_k127_138771_4 TIGRFAM Diguanylate cyclase - - - 1.703e-194 614.0
PJD3_k127_138771_5 Belongs to the cytochrome P450 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 582.0
PJD3_k127_138771_6 capsule polysaccharide K07265 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008691 431.0
PJD3_k127_138771_7 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 396.0
PJD3_k127_138771_8 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 313.0
PJD3_k127_138771_9 polysaccharide export protein KPSC K07266 - - 0.00000000000000000000000000000000000000000000000000000000000000000002131 239.0
PJD3_k127_1389236_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1211.0
PJD3_k127_1389236_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 2.048e-270 834.0
PJD3_k127_1389236_10 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000000000000000000001342 216.0
PJD3_k127_1389236_11 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000000000000000000000000000000001574 158.0
PJD3_k127_1389236_13 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.00000000000000000000000000000122 121.0
PJD3_k127_1389236_14 - - - - 0.000000000000000000000000000001708 121.0
PJD3_k127_1389236_2 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 5.405e-211 657.0
PJD3_k127_1389236_3 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002411 542.0
PJD3_k127_1389236_4 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine K01778 - 5.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007332 493.0
PJD3_k127_1389236_5 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 379.0
PJD3_k127_1389236_6 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 374.0
PJD3_k127_1389236_7 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000087 344.0
PJD3_k127_1389236_8 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005777 327.0
PJD3_k127_1389236_9 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000000000000000000000000000004762 224.0
PJD3_k127_1398372_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K01139 - 2.7.6.5,3.1.7.2 0.0 1362.0
PJD3_k127_1398372_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 1.42e-248 768.0
PJD3_k127_1398372_2 - - - - 9.259e-245 761.0
PJD3_k127_1398372_3 Peptidase s1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 497.0
PJD3_k127_1398372_4 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 454.0
PJD3_k127_1398372_5 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000005231 140.0
PJD3_k127_1398372_6 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.0000000000000000000000000000000002241 132.0
PJD3_k127_1433737_0 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 1.276e-287 888.0
PJD3_k127_1433737_1 RNA-binding protein homologous to eukaryotic snRNP - - - 4.047e-244 758.0
PJD3_k127_1433737_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 4.137e-207 649.0
PJD3_k127_1433737_3 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 574.0
PJD3_k127_1433737_4 Belongs to the CDS family K00981 - 2.7.7.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003277 471.0
PJD3_k127_1433737_5 Serine hydrolase K07002 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001939 242.0
PJD3_k127_1433737_6 - - - - 0.0000000000000000000000000000000000000000004445 160.0
PJD3_k127_1448772_0 PFAM CheW domain protein - - - 0.0 1512.0
PJD3_k127_1448772_1 COG0841 Cation multidrug efflux pump - - - 0.0 1032.0
PJD3_k127_1448772_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 5e-324 994.0
PJD3_k127_1448772_3 Flagellar Assembly Protein A - - - 2.807e-303 938.0
PJD3_k127_1448772_4 Belongs to the UPF0061 (SELO) family - - - 8.575e-261 808.0
PJD3_k127_1448772_5 outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000815 565.0
PJD3_k127_1448772_6 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 474.0
PJD3_k127_1448772_7 Belongs to the DNA mismatch repair MutS family K03555 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008021 352.0
PJD3_k127_14504_0 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1321.0
PJD3_k127_14504_1 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0 1023.0
PJD3_k127_14504_2 COGs COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase K15022 - 1.17.1.10 4.631e-294 902.0
PJD3_k127_146411_0 Diguanylate cyclase phosphodiesterase - - - 0.0 1032.0
PJD3_k127_146411_1 PFAM TonB-dependent Receptor Plug Domain K02014 - - 2.824e-224 700.0
PJD3_k127_146411_2 - - - - 0.000000000000000000000000000000000000000000000000000000000001385 214.0
PJD3_k127_146411_3 Periplasmic sensor domain - - - 0.00000000000000000000000000000000000001143 148.0
PJD3_k127_14654_0 abc transporter atp-binding protein K06147,K06148 - - 5.043e-296 918.0
PJD3_k127_14654_1 acid membrane antigen A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008535 530.0
PJD3_k127_14654_2 D12 class N6 adenine-specific DNA methyltransferase K07318 - 2.1.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 426.0
PJD3_k127_14654_3 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009673 406.0
PJD3_k127_14654_4 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 381.0
PJD3_k127_14654_6 - - - - 0.0000000000000000000000000000000000000000000000001452 179.0
PJD3_k127_14654_8 Uncharacterised protein family (UPF0014) K02069 - - 0.000000000003735 66.0
PJD3_k127_1468522_0 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003293 523.0
PJD3_k127_1468522_1 Histidine kinase - - - 0.00000000000000000000000000000002439 139.0
PJD3_k127_1468731_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 2.204e-247 765.0
PJD3_k127_1468731_1 Arginosuccinate synthase K00566 - 2.8.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 605.0
PJD3_k127_1468731_2 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 427.0
PJD3_k127_1468731_3 Signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 398.0
PJD3_k127_1468731_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001293 240.0
PJD3_k127_1468731_6 peptidyl-prolyl cis-trans isomerase activity K03769,K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000002498 174.0
PJD3_k127_1468731_7 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000002986 61.0
PJD3_k127_1477494_0 Domain of Unknown Function (DUF748) - - - 0.0 1075.0
PJD3_k127_1477494_1 Belongs to the UPF0324 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 398.0
PJD3_k127_1500032_0 Heat shock 70 kDa protein K04043 - - 1.303e-234 727.0
PJD3_k127_1500032_1 COG0471 Di- and tricarboxylate K03319 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001233 413.0
PJD3_k127_1500032_2 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 315.0
PJD3_k127_156673_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 1.357e-218 683.0
PJD3_k127_156673_1 cytochrome c class I - - - 0.0000000000000000000000000000000000000000000000000000000002326 204.0
PJD3_k127_156673_2 Chorismate mutase K04782 - 4.2.99.21 0.000000000000000000000000000000000000000000000000008239 181.0
PJD3_k127_156673_3 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000006108 167.0
PJD3_k127_156673_4 Pyridine nucleotide-disulphide oxidoreductase K17229 - 1.8.2.3 0.00000000000000000000000035 105.0
PJD3_k127_1596143_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 551.0
PJD3_k127_1596143_1 cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006616 462.0
PJD3_k127_1596143_2 Flagellar biosynthetic protein FliQ K02420 - - 0.00000000000000000000000000000000000000000001029 163.0
PJD3_k127_1596143_3 PFAM Resolvase, N terminal domain - - - 0.000000000000000000000000000000001826 130.0
PJD3_k127_1612556_0 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 1.595e-214 668.0
PJD3_k127_1612556_1 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002199 522.0
PJD3_k127_1612556_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003451 429.0
PJD3_k127_1612556_3 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 291.0
PJD3_k127_1612556_4 Hemolysin K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000574 200.0
PJD3_k127_1612556_6 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000003488 55.0
PJD3_k127_1612556_7 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.00000004443 58.0
PJD3_k127_1612556_8 energy transducer activity K03832 - - 0.0000002098 61.0
PJD3_k127_162246_0 GTP-binding protein K06207 - - 0.0 1200.0
PJD3_k127_162246_1 PFAM HI0933 family protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002481 408.0
PJD3_k127_162246_2 Flagellar hook-length control protein FliK - - - 0.000000000000000000000000000000000000000293 153.0
PJD3_k127_1646216_0 COG0457 FOG TPR repeat - - - 0.0 1211.0
PJD3_k127_1646216_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1199.0
PJD3_k127_1646216_10 phosphatidylserine decarboxylase K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004031 381.0
PJD3_k127_1646216_11 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 2.7.8.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000002998 265.0
PJD3_k127_1646216_12 Chemotaxis protein cheY K03413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006195 249.0
PJD3_k127_1646216_13 - - - - 0.000000000000000000000000000577 113.0
PJD3_k127_1646216_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 8.864e-255 787.0
PJD3_k127_1646216_3 lipopolysaccharide heptosyltransferase K02841 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 557.0
PJD3_k127_1646216_4 General glycosylation pathway protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 554.0
PJD3_k127_1646216_5 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 527.0
PJD3_k127_1646216_6 lipid a biosynthesis K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 479.0
PJD3_k127_1646216_7 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006013 452.0
PJD3_k127_1646216_8 PFAM dUTPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009227 402.0
PJD3_k127_1646216_9 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006406 399.0
PJD3_k127_16495_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1435.0
PJD3_k127_16495_1 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005875 543.0
PJD3_k127_16495_2 Phosphoesterase K07095 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 321.0
PJD3_k127_16495_3 Bacterial protein of unknown function (DUF882) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008424 307.0
PJD3_k127_16495_4 Belongs to the GSP D family K02453,K12282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 288.0
PJD3_k127_16495_6 AMMECR1 K09141 - - 0.000000000000000000000005224 101.0
PJD3_k127_165542_0 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member K03581 - 3.1.11.5 5.471e-253 784.0
PJD3_k127_165542_1 Cytochrome K00428 - 1.11.1.5 1.497e-202 633.0
PJD3_k127_165542_2 COGs COG3786 conserved - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006838 390.0
PJD3_k127_165542_3 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 371.0
PJD3_k127_1678010_0 COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 3.245e-258 801.0
PJD3_k127_1678010_1 PAS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007472 334.0
PJD3_k127_1689511_0 Cytochrome c-552 DMSO reductase-like, heme-binding domain K17052 - - 3.301e-239 742.0
PJD3_k127_1689511_1 4Fe-4S dicluster domain K17051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002782 335.0
PJD3_k127_1689511_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006756 264.0
PJD3_k127_1695505_0 COG4886 Leucine-rich repeat (LRR) protein - - - 4.45e-240 746.0
PJD3_k127_1695505_1 Belongs to the bacterial solute-binding protein 9 family K09815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 520.0
PJD3_k127_1695505_2 ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004388 467.0
PJD3_k127_1695505_3 Abc transporter K09816 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 451.0
PJD3_k127_1695505_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 434.0
PJD3_k127_1695505_5 Methyltransferase domain K02169 - 2.1.1.197 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007468 413.0
PJD3_k127_1695505_6 Preprotein translocase subunit SecG K03075 - - 0.000000000000000000000000000000000000000000000000002887 183.0
PJD3_k127_1695505_7 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000006392 99.0
PJD3_k127_1740445_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557,K03212,K03215 - 2.1.1.189,2.1.1.190,2.1.1.35 1.791e-217 677.0
PJD3_k127_1740445_1 Metal-dependent hydrolase K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006849 287.0
PJD3_k127_1740445_2 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001108 275.0
PJD3_k127_1740445_3 - - - - 0.0000000000000000000000000000000000000000000000003747 176.0
PJD3_k127_1740445_4 Chemoreceptor zinc-binding domain - - - 0.00000000000000000000000000000000000000000000006773 173.0
PJD3_k127_176930_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 587.0
PJD3_k127_176930_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 514.0
PJD3_k127_176930_10 - - - - 0.0000000000000000000000003541 104.0
PJD3_k127_176930_11 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.000000000004825 72.0
PJD3_k127_176930_2 Transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009048 451.0
PJD3_k127_176930_3 COG0433 Predicted ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002099 452.0
PJD3_k127_176930_4 YaeQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 341.0
PJD3_k127_176930_5 Transglycosylase SLT domain K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008095 342.0
PJD3_k127_176930_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 336.0
PJD3_k127_176930_7 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002301 257.0
PJD3_k127_176930_8 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007263 248.0
PJD3_k127_1772419_0 phosphorelay signal transduction system K01768,K07315 - 3.1.3.3,4.6.1.1 3.725e-225 705.0
PJD3_k127_1772419_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 9.495e-217 683.0
PJD3_k127_1772419_2 chemotaxis protein K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 450.0
PJD3_k127_1772419_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000004531 264.0
PJD3_k127_1772419_4 Diguanylate cyclase - - - 0.0000000000000001815 93.0
PJD3_k127_179052_0 Abc transporter K06158 - - 0.0 1116.0
PJD3_k127_179052_1 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006108 271.0
PJD3_k127_179052_2 Periplasmic binding protein domain K10439 - - 0.00000000000000000000000000000000000000000000000000000381 197.0
PJD3_k127_179052_3 phosphohydrolase (DHH superfamily) K07097 - - 0.0000000000000000000003115 95.0
PJD3_k127_1818381_0 Belongs to the GPI family K01810 - 5.3.1.9 4.225e-231 718.0
PJD3_k127_1818381_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 1.168e-200 627.0
PJD3_k127_1818381_2 ORF6N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 430.0
PJD3_k127_1818381_3 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 400.0
PJD3_k127_1818381_4 17 kDa surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007659 254.0
PJD3_k127_1818381_5 conserved protein, contains double-stranded beta-helix domain - - - 0.000000000000000000000000000000000000000000000000000000000001046 210.0
PJD3_k127_1818381_6 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000002314 194.0
PJD3_k127_1818381_7 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules K04763 - - 0.00000000000000000003649 89.0
PJD3_k127_18202_0 Glucose sorbosone - - - 1.084e-235 732.0
PJD3_k127_18202_1 NnrU protein K21310 - 2.1.1.334 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008656 454.0
PJD3_k127_18202_2 Encapsulating protein for peroxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002201 424.0
PJD3_k127_18202_3 Protein of unknown function (DUF2867) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005227 290.0
PJD3_k127_18202_5 Evidence 4 Homologs of previously reported genes of K09700 - - 0.0000000000000000000000000000000000000000000000000000000000000000114 227.0
PJD3_k127_18259_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1582.0
PJD3_k127_18259_1 phosphomannomutase K15778 - 5.4.2.2,5.4.2.8 1.299e-279 861.0
PJD3_k127_18259_11 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000002233 61.0
PJD3_k127_18259_2 Ammonium Transporter K03320 - - 1.591e-273 843.0
PJD3_k127_18259_3 Ammonium Transporter K03320 - - 1.738e-240 745.0
PJD3_k127_18259_4 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 3.265e-223 694.0
PJD3_k127_18259_5 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 8.961e-208 647.0
PJD3_k127_18259_6 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 421.0
PJD3_k127_18259_7 (Lipo)protein K09860 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004242 255.0
PJD3_k127_18259_8 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000000000000000000000000000007859 219.0
PJD3_k127_18259_9 Belongs to the P(II) protein family K04751,K04752 - - 0.0000000000000000000000000000000000000000000000000000000000000009739 219.0
PJD3_k127_188901_0 Peptidase, M16 - - - 2.436e-244 758.0
PJD3_k127_188901_1 COG1252 NADH dehydrogenase FAD-containing subunit K03885 - 1.6.99.3 7.239e-234 728.0
PJD3_k127_188901_2 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 7.717e-225 697.0
PJD3_k127_188901_3 Belongs to the KdsA family K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 518.0
PJD3_k127_188901_4 HI0933 family K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 350.0
PJD3_k127_188901_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004445 312.0
PJD3_k127_188901_6 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001937 262.0
PJD3_k127_188901_7 ATP-dependent DNA helicase K03655 - 3.6.4.12 0.000000000000000000000000000000000000001102 149.0
PJD3_k127_194663_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 9.422e-237 734.0
PJD3_k127_194663_1 Na H antiporter - - - 2.532e-217 679.0
PJD3_k127_194663_2 dihydropteroate synthase K00796 - 2.5.1.15 4.14e-208 651.0
PJD3_k127_194663_3 flagellar motor K02557 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000917 499.0
PJD3_k127_194663_4 forms the ion channels that couple flagellar rotation to proton sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine K02556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 482.0
PJD3_k127_194663_5 DNA replication regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007773 355.0
PJD3_k127_194663_6 Pfam Methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000002834 199.0
PJD3_k127_194663_7 DNA polymerase III K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000002698 172.0
PJD3_k127_19814_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.0 1102.0
PJD3_k127_19814_1 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 5.723e-283 872.0
PJD3_k127_19814_10 abc transporter atp-binding protein K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 480.0
PJD3_k127_19814_11 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004904 478.0
PJD3_k127_19814_12 Restriction endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002089 274.0
PJD3_k127_19814_13 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000923 229.0
PJD3_k127_19814_14 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000000000007528 227.0
PJD3_k127_19814_15 DnaJ molecular chaperone homology domain - - - 0.000000000000000000000000000000000000000000000000000002948 192.0
PJD3_k127_19814_18 membrane - - - 0.000000000000000000000000000000000004032 137.0
PJD3_k127_19814_2 peptidylprolyl isomerase K03770 - 5.2.1.8 9.612e-263 815.0
PJD3_k127_19814_3 Belongs to the UbiD family K03182 - 4.1.1.98 2.136e-260 803.0
PJD3_k127_19814_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 5.507e-255 789.0
PJD3_k127_19814_5 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 8.446e-252 780.0
PJD3_k127_19814_6 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 5.499e-227 705.0
PJD3_k127_19814_7 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 582.0
PJD3_k127_19814_8 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000637 580.0
PJD3_k127_19814_9 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009516 509.0
PJD3_k127_1985324_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 1.821e-263 813.0
PJD3_k127_1985324_1 homoserine dehydrogenase K00003 - 1.1.1.3 1.509e-253 784.0
PJD3_k127_1985324_10 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000002297 238.0
PJD3_k127_1985324_11 ribosomal protein L17 K02879 - - 0.0000000000000000000000000000000000000000000000000000000000000002007 221.0
PJD3_k127_1985324_12 Nitrogen fixation protein NifU - - - 0.00000000000000000000000000000000000000000000000000002647 188.0
PJD3_k127_1985324_13 - - - - 0.0000000000000000000000000000000000000001485 157.0
PJD3_k127_1985324_14 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000002767 77.0
PJD3_k127_1985324_2 Aminotransferase K14261 - - 1.025e-251 776.0
PJD3_k127_1985324_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 2.415e-207 646.0
PJD3_k127_1985324_4 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.128e-202 631.0
PJD3_k127_1985324_5 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007783 518.0
PJD3_k127_1985324_6 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 411.0
PJD3_k127_1985324_7 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004205 261.0
PJD3_k127_1985324_8 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001054 251.0
PJD3_k127_1985324_9 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006635 240.0
PJD3_k127_1986018_0 Protein of unknown function (DUF3373) - - - 1.543e-269 835.0
PJD3_k127_1986018_1 bacterioferritin comigratory protein K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009098 299.0
PJD3_k127_1986018_2 Belongs to the aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001185 266.0
PJD3_k127_1986018_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000001165 124.0
PJD3_k127_1994491_0 PFAM EAL domain - - - 9.587e-216 674.0
PJD3_k127_1994491_1 phosphorelay signal transduction system K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 443.0
PJD3_k127_2001638_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 516.0
PJD3_k127_2001638_1 Belongs to the 'phage' integrase family K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004113 464.0
PJD3_k127_2001638_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004816 292.0
PJD3_k127_2001638_3 PFAM Fimbrial assembly family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000044 275.0
PJD3_k127_2001638_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.00000000621 56.0
PJD3_k127_2009407_0 pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 1.081e-266 825.0
PJD3_k127_2009407_1 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 582.0
PJD3_k127_2009407_2 PFAM EAL domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 344.0
PJD3_k127_2009407_3 PFAM PAS fold-3 domain protein K03776 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005013 258.0
PJD3_k127_2009407_4 Family of unknown function (DUF695) - - - 0.0000000000000001028 79.0
PJD3_k127_2017432_0 ATPase related to phosphate starvation-inducible protein PhoH K07175 - - 5.269e-315 965.0
PJD3_k127_2017432_1 ATP synthase K02412 - 3.6.3.14 7.079e-264 814.0
PJD3_k127_2017432_2 Cysteine desulfurase K04487 - 2.8.1.7 2.455e-254 785.0
PJD3_k127_2017432_3 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0005488,GO:0010181,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0097159,GO:0097367,GO:1901265,GO:1901363 4.2.3.5 9.467e-214 665.0
PJD3_k127_2017432_4 May be involved in the formation or repair of Fe-S clusters present in iron-sulfur proteins K13819 - - 8.465e-210 654.0
PJD3_k127_2017432_5 tetratricopeptide repeat - - - 2.981e-194 608.0
PJD3_k127_2017432_6 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 425.0
PJD3_k127_2017432_7 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 370.0
PJD3_k127_2018398_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1351.0
PJD3_k127_2018398_1 signal-transduction protein containing cAMP-binding and CBS domains K07182 - - 0.0 1109.0
PJD3_k127_2018398_2 dna polymerase iii K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 383.0
PJD3_k127_2018398_3 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K14393 - - 0.0000000000000000000000000000000000000000006904 157.0
PJD3_k127_2022055_0 Type I secretion system ATPase K11004 - - 0.0 1278.0
PJD3_k127_2022055_1 COG4548 Nitric oxide reductase activation protein K02448 - - 0.0 1047.0
PJD3_k127_2022055_10 HPP family - - - 0.000000000000000000000000000000000000000000000000000000000000000000004505 237.0
PJD3_k127_2022055_11 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000002643 233.0
PJD3_k127_2022055_12 Outer membrane efflux protein - - - 0.0000000000000000000000001511 121.0
PJD3_k127_2022055_2 Nitric oxide reductase K04561 - 1.7.2.5 3.616e-278 857.0
PJD3_k127_2022055_3 Chemotaxis sensory transducer K03406 - - 7.192e-254 792.0
PJD3_k127_2022055_4 membrane-fusion protein K11003 - - 3.478e-232 723.0
PJD3_k127_2022055_5 protein involved in response to NO K07234 - - 4.18e-198 623.0
PJD3_k127_2022055_6 COG0714 MoxR-like K04748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001508 489.0
PJD3_k127_2022055_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002719 398.0
PJD3_k127_2022055_8 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 366.0
PJD3_k127_2022055_9 Cytochrome c K02305 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 297.0
PJD3_k127_202445_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.0 1013.0
PJD3_k127_202445_1 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 1.144e-211 661.0
PJD3_k127_202445_10 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 350.0
PJD3_k127_202445_12 - - - - 0.00000000000000000000000000000000000000000527 160.0
PJD3_k127_202445_13 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.000000000000000000000000000000002115 130.0
PJD3_k127_202445_15 Belongs to the heme-copper respiratory oxidase family - - - 0.00000008929 53.0
PJD3_k127_202445_16 DnaJ domain protein K05801 - - 0.000002069 58.0
PJD3_k127_202445_2 aldo keto reductase - - - 2.662e-208 649.0
PJD3_k127_202445_3 Hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000572 552.0
PJD3_k127_202445_4 PFAM Archaea bacterial proteins of K06921 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006485 516.0
PJD3_k127_202445_5 RESPONSE REGULATOR receiver K07288 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 479.0
PJD3_k127_202445_6 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 458.0
PJD3_k127_202445_7 Flagellar biosynthetic protein fliR K02421 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 444.0
PJD3_k127_202445_8 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 376.0
PJD3_k127_202445_9 abc transporter atp-binding protein K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 353.0
PJD3_k127_2028894_0 Histidine kinase - - - 0.0 1510.0
PJD3_k127_2028894_1 general secretion pathway protein K02456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007845 452.0
PJD3_k127_2028894_2 Response regulator receiver K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000001073 231.0
PJD3_k127_2028894_3 - - - - 0.0000000000000000000000000000000000000000000005896 170.0
PJD3_k127_2033732_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 2.979e-270 835.0
PJD3_k127_2033732_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000004878 214.0
PJD3_k127_2033732_2 PFAM Ferric reductase domain protein transmembrane component domain K17247 - - 0.0000000006496 64.0
PJD3_k127_2055316_0 Belongs to the DNA photolyase family K01669 - 4.1.99.3 8.306e-224 700.0
PJD3_k127_2055316_1 Protein of unknown function (DUF1722) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009958 556.0
PJD3_k127_2055316_2 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003951 345.0
PJD3_k127_2055316_3 lytic transglycosylase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 301.0
PJD3_k127_2055316_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008162 257.0
PJD3_k127_2055316_5 - - - - 0.0000000000000000000000000000000000000000000000007976 175.0
PJD3_k127_2055316_6 chemotaxis protein K03406 - - 0.0000000000000000000001775 97.0
PJD3_k127_2055316_8 PFAM biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 0.0000000000000003844 77.0
PJD3_k127_2069541_0 Sulfite reductase beta subunit (hemoprotein) K00392 - 1.8.7.1 9.14e-322 987.0
PJD3_k127_2069541_1 YcaO cyclodehydratase, ATP-ad Mg2+-binding K09136 - - 2.345e-282 871.0
PJD3_k127_2069541_10 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001368 266.0
PJD3_k127_2069541_11 Predicted membrane protein (DUF2061) - - - 0.00000000000000000000000000000000003283 135.0
PJD3_k127_2069541_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 2.976e-264 818.0
PJD3_k127_2069541_3 COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase K00957 - 2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004799 597.0
PJD3_k127_2069541_4 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003666 557.0
PJD3_k127_2069541_5 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 480.0
PJD3_k127_2069541_6 Tetrapyrrole (Corrin/Porphyrin) Methylases K02303 - 2.1.1.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 449.0
PJD3_k127_2069541_7 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002711 430.0
PJD3_k127_2069541_8 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 407.0
PJD3_k127_2069541_9 Involved in chromosome partitioning - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 354.0
PJD3_k127_2072727_0 COG0790 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 439.0
PJD3_k127_2072727_1 riboflavin synthase alpha K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006619 392.0
PJD3_k127_2072727_2 - - - - 0.000000000000000000000000000000000000000000000000000000007312 201.0
PJD3_k127_2072727_3 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.00000000000000000000000000000000001457 135.0
PJD3_k127_2086861_0 Belongs to the DegT DnrJ EryC1 family K15895 - 2.6.1.92 4.568e-231 717.0
PJD3_k127_2086861_1 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007166 531.0
PJD3_k127_2086861_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005427 496.0
PJD3_k127_2086861_3 hmm pf04305 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001317 464.0
PJD3_k127_2086861_4 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003306 358.0
PJD3_k127_2092635_0 Belongs to the DNA mismatch repair MutS family K03555 - - 0.0 1079.0
PJD3_k127_2092635_1 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 2.321e-267 824.0
PJD3_k127_2092635_10 flagellar protein FliS K02422 - - 0.000000000000000000000000000000000000000000000000000000000000000000007715 235.0
PJD3_k127_2092635_11 FlaG protein K06603 - - 0.00000000000000000000000000000000000000000000000000000000001264 209.0
PJD3_k127_2092635_12 - - - - 0.00000000000000000000000000000000000000000004765 161.0
PJD3_k127_2092635_13 Protein of unknown function, DUF255 - - - 0.000000000000000000000001952 103.0
PJD3_k127_2092635_14 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000007088 79.0
PJD3_k127_2092635_2 na -driven multidrug efflux - - - 2.481e-234 730.0
PJD3_k127_2092635_3 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 3.351e-233 726.0
PJD3_k127_2092635_4 Major Facilitator - - - 3.548e-215 672.0
PJD3_k127_2092635_5 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 1.169e-208 652.0
PJD3_k127_2092635_6 PFAM Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002446 496.0
PJD3_k127_2092635_7 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 331.0
PJD3_k127_2092635_8 signal transduction sensor histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000169 273.0
PJD3_k127_2092635_9 Binds to the 23S rRNA K02939 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005485 271.0
PJD3_k127_20969_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0 1364.0
PJD3_k127_20969_1 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 4.61e-293 900.0
PJD3_k127_20969_10 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006424 475.0
PJD3_k127_20969_11 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009403 456.0
PJD3_k127_20969_12 Histidine biosynthesis bifunctional protein hisIE K11755 - 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924 436.0
PJD3_k127_20969_13 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149 432.0
PJD3_k127_20969_14 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 358.0
PJD3_k127_20969_15 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 336.0
PJD3_k127_20969_16 COG2346 Truncated hemoglobins K06886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008611 320.0
PJD3_k127_20969_17 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003376 288.0
PJD3_k127_20969_18 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005172 282.0
PJD3_k127_20969_19 beta-lactamase activity K01058,K07126,K12543 - 3.1.1.32,3.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004834 274.0
PJD3_k127_20969_2 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 5.293e-252 779.0
PJD3_k127_20969_20 Protein of unknown function (DUF2393) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007486 264.0
PJD3_k127_20969_21 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001071 254.0
PJD3_k127_20969_22 Protein of unknown function (DUF2393) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003578 256.0
PJD3_k127_20969_23 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001102 240.0
PJD3_k127_20969_24 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007188 237.0
PJD3_k127_20969_25 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000000000000005493 216.0
PJD3_k127_20969_26 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000000000000000000006482 217.0
PJD3_k127_20969_27 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000000000000000000000000000000001013 204.0
PJD3_k127_20969_28 Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions K09913 - 2.4.2.1,2.4.2.2 0.000000000000000000000000000000000000000000000000000000007026 202.0
PJD3_k127_20969_29 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000000000000000000000000000007343 194.0
PJD3_k127_20969_3 Belongs to the aldehyde dehydrogenase family - - - 2.049e-222 692.0
PJD3_k127_20969_30 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000000000000000000000003371 169.0
PJD3_k127_20969_31 signal transduction sensor histidine kinase - - - 0.0000000000000000000000000000000000000000000000756 173.0
PJD3_k127_20969_32 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000000005548 154.0
PJD3_k127_20969_33 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000008661 149.0
PJD3_k127_20969_34 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.00000000000000000000000000000005053 124.0
PJD3_k127_20969_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 1.663e-199 622.0
PJD3_k127_20969_5 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 1.135e-196 616.0
PJD3_k127_20969_6 Radical SAM protein K07139 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 583.0
PJD3_k127_20969_7 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004258 578.0
PJD3_k127_20969_8 S1 domain K00243 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005076 530.0
PJD3_k127_20969_9 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 503.0
PJD3_k127_2099800_0 Belongs to the IlvD Edd family K01687 - 4.2.1.9 2.743e-206 642.0
PJD3_k127_2099800_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002109 239.0
PJD3_k127_2099800_2 - - - - 0.000000001465 64.0
PJD3_k127_2107375_0 ATPase (AAA K07133 - - 1.384e-209 653.0
PJD3_k127_2107375_1 Cytochrome - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 469.0
PJD3_k127_2107375_2 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 385.0
PJD3_k127_2107375_3 ribosomal protein L3 K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000983 376.0
PJD3_k127_2107375_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006446 342.0
PJD3_k127_2107375_5 Dihaem cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 328.0
PJD3_k127_2107375_6 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000276 247.0
PJD3_k127_2107375_7 Cytochrome C protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001884 237.0
PJD3_k127_2107375_8 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000000000000000002113 200.0
PJD3_k127_2107375_9 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000003673 57.0
PJD3_k127_2158390_0 apolipoprotein N-acyltransferase K03820 - - 5.5e-241 747.0
PJD3_k127_2158390_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.247e-201 631.0
PJD3_k127_2158390_2 PFAM biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 0.000000000000000000000000000000001992 129.0
PJD3_k127_2158390_3 Preprotein translocase K03210 - - 0.00000000000000000000002277 104.0
PJD3_k127_2172215_0 lytic murein transglycosylase K08307 - - 3.364e-214 670.0
PJD3_k127_2172215_1 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 391.0
PJD3_k127_2172215_2 hydrolase, TatD K03424 - - 0.0000000000000000000000000000000000000000000000002422 176.0
PJD3_k127_2173910_0 UDP-N-acetylglucosamine 4,6-dehydratase K15894 - 4.2.1.115 9.752e-215 667.0
PJD3_k127_2173910_1 Belongs to the DegT DnrJ EryC1 family K15895 - 2.6.1.92 4.296e-202 633.0
PJD3_k127_2173910_10 Acetyltransferase (GNAT) domain - - - 0.00000000000021 76.0
PJD3_k127_2173910_2 acid synthase K01654,K15898 - 2.5.1.56,2.5.1.97 3.219e-197 617.0
PJD3_k127_2173910_3 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006717 592.0
PJD3_k127_2173910_4 pseudaminic acid biosynthesis-associated protein PseG K15897 - 3.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 452.0
PJD3_k127_2173910_5 morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end K02407 GO:0001539,GO:0005575,GO:0005576,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 456.0
PJD3_k127_2173910_6 CMP-N-acetylneuraminic acid synthetase K00983,K15899 - 2.7.7.43,2.7.7.81 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 439.0
PJD3_k127_2173910_7 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 438.0
PJD3_k127_2173910_8 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 433.0
PJD3_k127_2173910_9 PFAM glycosyl transferase family 9 - - - 0.0000000000000000000000000000000000000000000000000000000000000000006426 242.0
PJD3_k127_2193254_0 General glycosylation pathway protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001372 526.0
PJD3_k127_2193254_1 Metallophosphoesterase K07098 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 496.0
PJD3_k127_2193254_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000175 485.0
PJD3_k127_2193254_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007655 297.0
PJD3_k127_2193254_4 4Fe-4S dicluster domain - - - 0.0000000000000000000000000005023 113.0
PJD3_k127_2193254_5 Protein of unknown function (DUF493) K09158 - - 0.00000000006788 66.0
PJD3_k127_2208478_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001575 559.0
PJD3_k127_2208478_1 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 536.0
PJD3_k127_2208478_2 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003861 376.0
PJD3_k127_2208478_3 energy transducer activity K03832 - - 0.0000000000000000000000000000000000000000000000001681 177.0
PJD3_k127_2208478_4 Diguanylate cyclase (GGDEF) domain - - - 0.0000000000000000000000000000000000002437 154.0
PJD3_k127_2208478_5 Cytochrome c - - - 0.00000000000000000000000000003538 120.0
PJD3_k127_2209017_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 606.0
PJD3_k127_2209017_1 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009296 518.0
PJD3_k127_2209017_2 - - - - 0.000000000000000000000000000000000000000000000000000000000004967 208.0
PJD3_k127_2218225_0 radical SAM domain protein K03716 - 4.1.99.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002031 488.0
PJD3_k127_2218225_1 PFAM purine or other phosphorylase family 1 - - - 0.0000000000000000000000000000000001897 142.0
PJD3_k127_2233149_0 Fibronectin type 3 domain-containing protein K06882 - - 1.975e-240 747.0
PJD3_k127_2233149_1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 3.977e-231 717.0
PJD3_k127_2233149_10 Protein of unknown function (DUF1294) - - - 0.0005067 45.0
PJD3_k127_2233149_2 Belongs to the SEDS family K05837 - - 8.95e-222 689.0
PJD3_k127_2233149_3 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008821 493.0
PJD3_k127_2233149_4 Cell division protein FtsX K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000384 472.0
PJD3_k127_2233149_5 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 342.0
PJD3_k127_2233149_6 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005084 295.0
PJD3_k127_2233149_7 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002637 256.0
PJD3_k127_2256217_0 Methyl-accepting chemotaxis protein K03406 - - 5.727e-198 622.0
PJD3_k127_2256217_1 Belongs to the UPF0260 family K09160 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006716 274.0
PJD3_k127_2272724_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 1.657e-216 673.0
PJD3_k127_2272724_1 endoribonuclease L-PSP K09022 - 3.5.99.10 0.0000000000000000000000000000000000000000000000000000000000000000135 225.0
PJD3_k127_2272724_2 Protein of unknown function, DUF255 - - - 0.0000000000000000000000000000000000000000000000000000000000000478 214.0
PJD3_k127_2272724_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000000000000000000000000533 199.0
PJD3_k127_2272724_4 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000000000000000000001955 173.0
PJD3_k127_232127_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.0 1237.0
PJD3_k127_232127_1 8-amino-7-oxononanoate synthase K00652 - 2.3.1.47 3.921e-202 633.0
PJD3_k127_232127_2 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008793 434.0
PJD3_k127_232127_3 Abc transporter K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 378.0
PJD3_k127_232127_4 nucleotide-binding protein implicated in inhibition of septum formation K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 299.0
PJD3_k127_2330203_0 Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 517.0
PJD3_k127_2330203_1 PAS fold K03776 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 350.0
PJD3_k127_2330203_2 chemotaxis protein K03407 - 2.7.13.3 0.0007745 42.0
PJD3_k127_2382165_0 Type I secretion system ATPase K12541 - - 0.0 1317.0
PJD3_k127_2382165_1 HlyD membrane-fusion protein of T1SS K12542 - - 3.272e-250 776.0
PJD3_k127_2382165_2 Outer membrane efflux protein K12543 - - 7.579e-238 742.0
PJD3_k127_2382165_3 Belongs to the ompA family K03286 - - 0.00000000000000000000001617 104.0
PJD3_k127_2429343_0 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1527.0
PJD3_k127_2429343_1 diguanylate cyclase K13590 - 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000135 518.0
PJD3_k127_2429343_2 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 330.0
PJD3_k127_2429343_3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.0000000000000000000000000000000000000000000000000000006389 192.0
PJD3_k127_24934_0 Lysine methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004929 387.0
PJD3_k127_24934_2 Cupin - - - 0.0000000000000000000000000000000000000000000000000000000000000000001388 231.0
PJD3_k127_24934_3 Cold-shock protein K03704 - - 0.00000000000000000000000000000000000000001585 153.0
PJD3_k127_24934_4 - - - - 0.00000000000000000000000000000001488 128.0
PJD3_k127_24934_5 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.0000000000000000000000000006703 113.0
PJD3_k127_256893_0 Domain of unknown function (DUF389) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004314 579.0
PJD3_k127_256893_1 Peptidase s1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008224 252.0
PJD3_k127_2636423_0 ATPase (AAA - - - 0.0 1112.0
PJD3_k127_2636423_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.293e-269 830.0
PJD3_k127_2636423_2 chemotaxis protein - - - 1.362e-205 643.0
PJD3_k127_2636423_3 COGs COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase K15022 - 1.17.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 572.0
PJD3_k127_2636423_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00332 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 529.0
PJD3_k127_2636423_5 Long-chain fatty acid transport protein K06076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 526.0
PJD3_k127_2636423_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 351.0
PJD3_k127_2636423_7 putative NADH-ubiquinone oxidoreductase chain E K00334 - 1.6.5.3 0.000000000000000000000000000000000125 133.0
PJD3_k127_2648210_0 twitching motility protein K02669 - - 1.518e-215 671.0
PJD3_k127_2648210_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004381 597.0
PJD3_k127_2648210_2 Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 494.0
PJD3_k127_2648210_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 327.0
PJD3_k127_2648210_4 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001352 274.0
PJD3_k127_2648210_5 Belongs to the Fur family K09825 - - 0.0000000000000000000000000000000000000000000000000000000000000000003579 230.0
PJD3_k127_2648210_6 conserved protein, contains double-stranded beta-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000006086 214.0
PJD3_k127_2648210_7 Belongs to the ArsC family - - - 0.0000000000000000000000000000000000000000000000000001133 187.0
PJD3_k127_2648210_8 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000002229 169.0
PJD3_k127_2659225_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.6 1.5e-323 991.0
PJD3_k127_2659225_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.1.2.1 4.382e-267 826.0
PJD3_k127_2659225_2 anthranilate synthase component K01657 - 4.1.3.27 3.143e-197 619.0
PJD3_k127_2659225_3 Domain of unknown function (DUF1882) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004 362.0
PJD3_k127_2659225_4 Sporulation related domain K03591,K03749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 345.0
PJD3_k127_2659225_5 Belongs to the Fur family K03711 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000000001204 174.0
PJD3_k127_2667401_0 Glutamate synthase K00265 - 1.4.1.13,1.4.1.14 0.0 2760.0
PJD3_k127_2667401_1 Histidine kinase - - - 0.0 1089.0
PJD3_k127_2667401_10 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007885 319.0
PJD3_k127_2667401_11 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006792 252.0
PJD3_k127_2667401_12 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000001364 231.0
PJD3_k127_2667401_13 Domain of unknown function (DUF4395) - - - 0.00000000000000000000000000000000000000000000000000000000000000002913 225.0
PJD3_k127_2667401_14 protein-glutamate methylesterase K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000006596 169.0
PJD3_k127_2667401_16 Inositol monophosphatase K01092 - 3.1.3.25 0.000001232 50.0
PJD3_k127_2667401_2 Glutamate synthase K00266 - 1.4.1.13,1.4.1.14 6.048e-297 912.0
PJD3_k127_2667401_3 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 2.275e-223 695.0
PJD3_k127_2667401_4 Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) K00557 - 2.1.1.35 1.027e-215 672.0
PJD3_k127_2667401_5 protein involved in exopolysaccharide biosynthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006754 478.0
PJD3_k127_2667401_6 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009191 449.0
PJD3_k127_2667401_7 methyltransferase K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 415.0
PJD3_k127_2667401_8 RecO N terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 395.0
PJD3_k127_2667401_9 methyl-accepting chemotaxis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003259 379.0
PJD3_k127_2669645_0 signal transduction protein containing EAL and modified HD-GYP domains - - - 2.823e-219 685.0
PJD3_k127_2669645_1 Belongs to the sodium neurotransmitter symporter (SNF) (TC 2.A.22) family K03308 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004316 589.0
PJD3_k127_2669645_2 peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003108 426.0
PJD3_k127_2669645_3 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000006086 214.0
PJD3_k127_2669645_4 - - - - 0.00000000000000000000000000000000129 136.0
PJD3_k127_2669645_6 Nucleoside-specific channel-forming protein, Tsx - - - 0.00000000000000000002754 97.0
PJD3_k127_2669645_8 - - - - 0.0000002077 52.0
PJD3_k127_2669645_9 - - - - 0.000001791 50.0
PJD3_k127_2671701_0 two-component sensor histidine kinase - - - 8.9e-308 953.0
PJD3_k127_2671701_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 388.0
PJD3_k127_2671701_2 Protein of unknown function (DUF1566) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 316.0
PJD3_k127_2671701_3 TIGRFAM DJ-1 family protein K03152 - 3.5.1.124 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 295.0
PJD3_k127_2671701_4 Belongs to the UPF0178 family K09768 - - 0.00000000000000000000000000000000000000000000002397 171.0
PJD3_k127_2671701_5 flagellar protein FlaG K06603 - - 0.00000000000000000000000000000000000000696 147.0
PJD3_k127_2671701_7 PFAM response regulator receiver K22010 - - 0.000000003643 66.0
PJD3_k127_2671701_8 outer membrane efflux protein - - - 0.0001815 45.0
PJD3_k127_2687069_0 Archaea bacterial proteins of unknown function K06921 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005547 542.0
PJD3_k127_2687069_1 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 459.0
PJD3_k127_2687069_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 327.0
PJD3_k127_2687069_3 PFAM Rhodanese domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002663 273.0
PJD3_k127_2687069_4 COG0760 Parvulin-like peptidyl-prolyl isomerase K03769 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000005814 184.0
PJD3_k127_2687069_5 - - - - 0.000000000000000000000000000000000000000000000000009286 181.0
PJD3_k127_2726153_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 9.975e-321 984.0
PJD3_k127_2759242_0 phosphate transporter K03306 - - 8.032e-304 934.0
PJD3_k127_2759242_1 - - - - 2.782e-199 631.0
PJD3_k127_2759242_10 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000001327 115.0
PJD3_k127_2759242_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 379.0
PJD3_k127_2759242_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001852 374.0
PJD3_k127_2759242_4 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005229 332.0
PJD3_k127_2759242_5 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07305,K12267 - 1.8.4.11,1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001888 260.0
PJD3_k127_2759242_6 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000000000000000000000000000000000001914 173.0
PJD3_k127_2759242_7 Pfam Methyltransferase - - - 0.000000000000000000000000000000000000000000001398 165.0
PJD3_k127_2759242_8 DNA-binding protein - - - 0.00000000000000000000000000000000000000003457 153.0
PJD3_k127_2770768_0 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007709 587.0
PJD3_k127_2770768_1 dehydrogenase K00076 - 1.1.1.159 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005272 490.0
PJD3_k127_2770768_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000408 402.0
PJD3_k127_2770768_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 320.0
PJD3_k127_2770768_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000007955 213.0
PJD3_k127_2810231_0 COG0513 Superfamily II DNA and RNA K11927 - 3.6.4.13 3.598e-260 806.0
PJD3_k127_2810231_1 Belongs to the Orn Lys Arg decarboxylase class-II family. NspC subfamily K13747 - 4.1.1.96 9.461e-246 759.0
PJD3_k127_2810231_2 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009406 501.0
PJD3_k127_2810231_3 chain release factor K15034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006615 250.0
PJD3_k127_2810231_4 protein involved in exopolysaccharide biosynthesis - - - 0.00000002891 54.0
PJD3_k127_2849167_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 1.103e-202 632.0
PJD3_k127_2849167_1 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 579.0
PJD3_k127_2849167_10 - - - - 0.00000000000000000000000000000000000000000000000000000000005614 205.0
PJD3_k127_2849167_11 - - - - 0.000000000000000000000000000000000000000000000000000000005934 200.0
PJD3_k127_2849167_12 nucleoside-diphosphate sugar epimerase K07071 - - 0.00000000000000000000000000000000000000000000000000009186 198.0
PJD3_k127_2849167_13 ICEA Protein K01155 - 3.1.21.4 0.000000000000000000000000000001414 129.0
PJD3_k127_2849167_14 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000001455 76.0
PJD3_k127_2849167_2 Methylenetetrahydrofolate reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004487 568.0
PJD3_k127_2849167_3 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004958 516.0
PJD3_k127_2849167_4 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 456.0
PJD3_k127_2849167_5 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 404.0
PJD3_k127_2849167_6 abc transporter atp-binding protein K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 306.0
PJD3_k127_2849167_7 G T U mismatch-specific DNA glycosylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002112 273.0
PJD3_k127_2849167_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008409 256.0
PJD3_k127_2849167_9 transport system auxiliary component K18480 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001707 249.0
PJD3_k127_2944176_0 COG3893 inactivated superfamily I helicase - - - 0.0 1346.0
PJD3_k127_2944176_1 C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex K00406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 546.0
PJD3_k127_2944176_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008095 428.0
PJD3_k127_2944176_3 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007919 289.0
PJD3_k127_2944176_4 FixH - - - 0.0000000000000000000000000000000000000000000197 168.0
PJD3_k127_2944176_5 Family of unknown function (DUF4006) - - - 0.00000000000000000000000000000004658 126.0
PJD3_k127_2944176_6 cytochrome c oxidase K00407 - - 0.000000000000000000000000000003156 120.0
PJD3_k127_2991945_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 4.028e-290 892.0
PJD3_k127_2991945_1 chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 480.0
PJD3_k127_2991945_2 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 466.0
PJD3_k127_2991945_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007045 377.0
PJD3_k127_3000084_0 chemotaxis protein K03406 - - 2.291e-282 875.0
PJD3_k127_3000084_1 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004288 595.0
PJD3_k127_3000084_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 437.0
PJD3_k127_3000084_3 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004753 304.0
PJD3_k127_3000084_4 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000000000000000002225 228.0
PJD3_k127_3000084_5 Cupin domain K11312 - - 0.000000000000000004003 87.0
PJD3_k127_3048454_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0 1080.0
PJD3_k127_3048454_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 4.261e-284 876.0
PJD3_k127_3048454_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K03776 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009632 272.0
PJD3_k127_3048454_3 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0000000000004241 69.0
PJD3_k127_305913_0 Outer membrane protein beta-barrel family K02014 - - 0.0 1030.0
PJD3_k127_305913_1 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 9.349e-296 910.0
PJD3_k127_305913_10 dna polymerase iii K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 424.0
PJD3_k127_305913_11 Belongs to the TrpF family K01817 - 5.3.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001412 341.0
PJD3_k127_305913_13 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000000000000000000000000000000148 197.0
PJD3_k127_305913_14 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000000001505 144.0
PJD3_k127_305913_15 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000001071 121.0
PJD3_k127_305913_16 Conserved phage C-terminus (Phg_2220_C) - - - 0.00000000002909 74.0
PJD3_k127_305913_19 - - - - 0.000003861 51.0
PJD3_k127_305913_2 PAS fold - - - 3.52e-272 841.0
PJD3_k127_305913_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 7.092e-256 793.0
PJD3_k127_305913_4 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 9.623e-251 775.0
PJD3_k127_305913_5 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 5.494e-242 754.0
PJD3_k127_305913_6 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 1.769e-206 644.0
PJD3_k127_305913_7 Phage integrase family - - - 1.299e-204 644.0
PJD3_k127_305913_8 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 592.0
PJD3_k127_305913_9 reductase K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005287 452.0
PJD3_k127_3091986_0 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 1.815e-221 694.0
PJD3_k127_3091986_1 PFAM outer membrane porin - - - 3.504e-209 657.0
PJD3_k127_3091986_2 PFAM Methyl-accepting chemotaxis protein (MCP) signaling domain K03406,K05875 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 435.0
PJD3_k127_3091986_3 Chemotaxis protein CheW K03408 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 299.0
PJD3_k127_3091986_4 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000000004168 236.0
PJD3_k127_321651_0 ATPase (AAA K01714,K12283 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 517.0
PJD3_k127_321651_1 Type II and III secretion system protein K02453 - - 0.000000000000000000000000000000000001216 138.0
PJD3_k127_3289894_0 Diguanylate cyclase - - - 0.0 1054.0
PJD3_k127_3289894_1 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008049 465.0
PJD3_k127_3289894_2 Bacterial transglutaminase-like cysteine proteinase BTLCP - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 386.0
PJD3_k127_3289894_3 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002917 281.0
PJD3_k127_3289894_4 PFAM NifU-like N terminal domain K04488 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007822 248.0
PJD3_k127_3289894_5 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000009205 132.0
PJD3_k127_3291515_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 GO:0000018,GO:0008150,GO:0009892,GO:0010605,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0045910,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0060255,GO:0065007,GO:0080090 - 0.0 1259.0
PJD3_k127_3291515_1 HNH endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005712 266.0
PJD3_k127_3298248_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 5e-323 991.0
PJD3_k127_3298248_1 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 323.0
PJD3_k127_3298248_2 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000227 228.0
PJD3_k127_3340441_0 acetolactate synthase K01652 - 2.2.1.6 0.0 1113.0
PJD3_k127_3340441_1 Histidine kinase-like ATPases K03407 - 2.7.13.3 0.0 1034.0
PJD3_k127_3340441_11 Diguanylate cyclase phosphodiesterase - - - 0.0000000000000002048 78.0
PJD3_k127_3340441_2 Aminotransferase K00812 - 2.6.1.1 1.059e-241 748.0
PJD3_k127_3340441_3 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 571.0
PJD3_k127_3340441_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003681 307.0
PJD3_k127_3340441_5 acetolactate synthase K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 302.0
PJD3_k127_3340441_6 Chemotaxis phosphatase CheX K03409 - - 0.0000000000000000000000000000000000000000000000000000000000000000003922 232.0
PJD3_k127_3340441_7 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000001372 229.0
PJD3_k127_3340441_9 - - - - 0.000000000000000000000000000000000000605 140.0
PJD3_k127_3347028_0 Glycosyl hydrolase family 57 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006556 542.0
PJD3_k127_3387434_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 5.263e-243 752.0
PJD3_k127_3387434_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 601.0
PJD3_k127_3387434_2 Enoyl- acyl-carrier-protein reductase NADH K00208 GO:0003674,GO:0003824,GO:0004312,GO:0004318,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0022607,GO:0030497,GO:0032787,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072330,GO:1901576 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 516.0
PJD3_k127_3387434_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 430.0
PJD3_k127_3387434_4 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009199 283.0
PJD3_k127_3387434_5 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000000000000000000000000000005254 217.0
PJD3_k127_3387434_6 - - - - 0.00000000000000000000000000000000000000000000000000002294 193.0
PJD3_k127_3387434_7 DUF218 domain - - - 0.00000000000000000000000000000003221 128.0
PJD3_k127_3390337_0 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004802 577.0
PJD3_k127_3390337_1 component I K01665 - 2.6.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 421.0
PJD3_k127_3390337_2 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0016874,GO:0016879,GO:0016882 6.3.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006606 332.0
PJD3_k127_3397263_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.6 1.737e-319 979.0
PJD3_k127_3397263_1 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 - 2.5.1.54 5.132e-232 719.0
PJD3_k127_3397263_2 COG2199 FOG GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 514.0
PJD3_k127_3397263_3 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 319.0
PJD3_k127_3397263_4 Colicin V production protein K03558 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 316.0
PJD3_k127_3397263_5 Belongs to the Fur family K03711 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 309.0
PJD3_k127_3426651_0 Belongs to the aconitase IPM isomerase family K01682 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003994,GO:0005488,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009060,GO:0009062,GO:0009987,GO:0015980,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017001,GO:0017144,GO:0019541,GO:0019543,GO:0019626,GO:0019629,GO:0019752,GO:0032787,GO:0042737,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0045333,GO:0046395,GO:0046459,GO:0047456,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:0072329,GO:0072350,GO:0097159,GO:1901363,GO:1901575 4.2.1.3,4.2.1.99 0.0 1682.0
PJD3_k127_3426651_1 Belongs to the FtsK SpoIIIE SftA family K03466 - - 0.0 1208.0
PJD3_k127_3426651_2 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02397 - - 8.518e-286 893.0
PJD3_k127_3426651_3 Belongs to the DEAD box helicase family K05591 - 3.6.4.13 1.15e-270 835.0
PJD3_k127_3426651_4 chemotaxis protein - - - 4.907e-249 775.0
PJD3_k127_3426651_5 Phage integrase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 515.0
PJD3_k127_3426651_6 Phage integrase, N-terminal SAM-like domain K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 297.0
PJD3_k127_3426651_7 Histidine kinase - - - 0.000000000000000000000000000000000000183 146.0
PJD3_k127_3426651_8 Belongs to the GPI family K01810 - 5.3.1.9 0.000000000000000000000000116 106.0
PJD3_k127_3426651_9 Belongs to the 'phage' integrase family K03111 - - 0.0008996 43.0
PJD3_k127_3429147_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0 1938.0
PJD3_k127_3429147_1 GGDEF domain - - - 3.335e-294 912.0
PJD3_k127_3429147_2 4fe-4s ferredoxin, iron-sulfur binding - - - 9.497e-206 643.0
PJD3_k127_3429147_3 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 609.0
PJD3_k127_3429147_4 component of anaerobic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 405.0
PJD3_k127_3429147_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 301.0
PJD3_k127_3429147_6 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008445 261.0
PJD3_k127_3433658_0 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 7.593e-253 784.0
PJD3_k127_3433658_1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 3.31e-241 747.0
PJD3_k127_3433658_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004731 581.0
PJD3_k127_3433658_3 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 573.0
PJD3_k127_3433658_4 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 335.0
PJD3_k127_3433658_5 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 312.0
PJD3_k127_3433658_6 Uncharacterised protein family UPF0047 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002876 259.0
PJD3_k127_3433658_7 Bacterial transcriptional repressor C-terminal - - - 0.0000000000000000000000000003745 121.0
PJD3_k127_343623_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 1.903e-203 645.0
PJD3_k127_343623_1 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 566.0
PJD3_k127_343623_2 This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation K02591 - 1.18.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 449.0
PJD3_k127_343623_3 COG2199 FOG GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005491 404.0
PJD3_k127_343623_4 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000015 286.0
PJD3_k127_343623_5 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000001451 159.0
PJD3_k127_3447003_0 Belongs to the flagella basal body rod proteins family K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 506.0
PJD3_k127_3447003_1 flagellar basal body K02392 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007769 493.0
PJD3_k127_3447003_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000009481 222.0
PJD3_k127_3447003_3 alpha beta - - - 0.000000004202 59.0
PJD3_k127_3472504_0 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 - - 0.0 1116.0
PJD3_k127_3472504_1 DNA helicase K03657 - 3.6.4.12 0.0 1029.0
PJD3_k127_3472504_2 Type II secretion system K02455,K12278 - - 1.928e-238 740.0
PJD3_k127_3472504_3 proteins homologs of microcin C7 resistance protein MccF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001208 257.0
PJD3_k127_3472504_4 Anaphase-promoting complex, cyclosome, subunit 3 - - - 0.00000000000000000001475 91.0
PJD3_k127_3473842_0 flagellar - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 492.0
PJD3_k127_3473842_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003704 437.0
PJD3_k127_3473842_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 381.0
PJD3_k127_3473842_3 Dtw domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009443 352.0
PJD3_k127_3473842_4 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001189 332.0
PJD3_k127_3473842_6 flagellar motor switch protein K02417 - - 0.000000000000000000000000000000000000000000000000000000002327 200.0
PJD3_k127_3473842_7 Potassium uptake protein K03498 - - 0.000000000000000000000000000000000000000000000000000000005332 201.0
PJD3_k127_3508857_0 flagellar biosynthesis K02404 - - 3.049e-255 789.0
PJD3_k127_3508857_1 Belongs to the ParA family K04562 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003154 542.0
PJD3_k127_3508857_2 Belongs to the sigma-70 factor family K02405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001837 430.0
PJD3_k127_3508857_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008727 284.0
PJD3_k127_3508857_4 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002756 267.0
PJD3_k127_3508857_5 - - - - 0.0000000000000000000000000000000000000000000000000000002198 194.0
PJD3_k127_3508857_6 flagellar motor switch protein K02416 - - 0.0000000000000000000000000000000000001024 142.0
PJD3_k127_3517613_0 potassium channel protein K10716 - - 1.639e-248 775.0
PJD3_k127_3517613_1 TrkA-N domain K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 355.0
PJD3_k127_3517613_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000001753 66.0
PJD3_k127_3531783_0 Domain of unknown function (DUF389) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 606.0
PJD3_k127_3531783_1 Peptidase s1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008224 252.0
PJD3_k127_3531783_2 Na( ) H( ) antiporter that extrudes sodium in exchange for external protons K03313 - - 0.000000000000004366 76.0
PJD3_k127_354681_0 Bacterial periplasmic substrate-binding proteins - - - 2.795e-317 990.0
PJD3_k127_354681_1 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 314.0
PJD3_k127_354681_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000002383 221.0
PJD3_k127_354681_3 Hemerythrin K07216 - - 0.0000000000000000000000000001181 120.0
PJD3_k127_3598007_1 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004575 504.0
PJD3_k127_3598007_2 Stress responsive A B Barrel Domain - - - 0.00000000000000000000000000000000000000000000005106 170.0
PJD3_k127_3610317_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.0 1416.0
PJD3_k127_3610317_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 5.207e-260 803.0
PJD3_k127_3610317_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 4.607e-221 686.0
PJD3_k127_3611689_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.171e-260 807.0
PJD3_k127_3611689_1 Participates in both transcription termination and antitermination K02600 - - 1.54e-229 713.0
PJD3_k127_3611689_2 ABC transporter permease K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000343 291.0
PJD3_k127_3611689_3 protein conserved in bacteria K09778 - - 0.00000000000000000000000000000000000000000000003024 173.0
PJD3_k127_3611689_4 - - - - 0.0000000000000000000000000000000000000000001419 159.0
PJD3_k127_3638357_0 Involved in the TonB-independent uptake of proteins K03641 - - 1.32e-225 703.0
PJD3_k127_3638357_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 7.538e-208 646.0
PJD3_k127_3638357_2 MotA TolQ ExbB proton channel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006145 336.0
PJD3_k127_3638357_3 TonB C terminal K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 321.0
PJD3_k127_3638357_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.00000000000000000000000000000000000000000000000000000000000000000003244 233.0
PJD3_k127_3638357_5 transport protein K03559 - - 0.000000000000000000000000000000000000000000000000000000001183 202.0
PJD3_k127_3638357_6 Belongs to the ompA family K03640 - - 0.00000000002511 64.0
PJD3_k127_3756004_0 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005475 469.0
PJD3_k127_3756004_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 452.0
PJD3_k127_3756004_2 Anthranilate synthase K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009075 385.0
PJD3_k127_38644_0 LamB porin K02024 - - 4.962e-198 624.0
PJD3_k127_38644_1 Periplasmic binding proteins and sugar binding domain of LacI family K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 475.0
PJD3_k127_38644_2 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 415.0
PJD3_k127_38644_3 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000001586 207.0
PJD3_k127_3889961_0 COG0847 DNA polymerase III epsilon subunit and related 3'-5' K02342,K10857 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006446 405.0
PJD3_k127_3889961_1 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 331.0
PJD3_k127_3889961_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002866 246.0
PJD3_k127_3889961_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007306 241.0
PJD3_k127_3946708_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 2.672e-205 640.0
PJD3_k127_3946708_1 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009464 521.0
PJD3_k127_3946708_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 479.0
PJD3_k127_3947491_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 0.0 1059.0
PJD3_k127_3947491_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.155e-200 630.0
PJD3_k127_3947491_2 TIGRFAM prepilin-type N-terminal cleavage methylation domain K02456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005897 256.0
PJD3_k127_3947491_3 Dinitrogenase iron-molybdenum cofactor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001071 254.0
PJD3_k127_3947491_4 glutamine synthetase K01915 - 6.3.1.2 0.000000000000000000000002275 101.0
PJD3_k127_3947491_5 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000002221 87.0
PJD3_k127_3954303_0 NMT1/THI5 like - - - 0.0 1424.0
PJD3_k127_3954303_1 Histidine kinase K02484 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 451.0
PJD3_k127_3954303_2 response regulator K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 413.0
PJD3_k127_3954303_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 308.0
PJD3_k127_3957886_0 Belongs to the CinA family K03743 - 3.5.1.42 6.255e-221 687.0
PJD3_k127_3957886_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.00000000000000000000000007298 106.0
PJD3_k127_3966648_0 Belongs to the DEAD box helicase family K05592 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.6.4.13 0.0 1002.0
PJD3_k127_3966648_1 Cytochrome c554 and c-prime - - - 7.047e-217 677.0
PJD3_k127_3966648_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 2.505e-210 654.0
PJD3_k127_3966648_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 8.555e-204 635.0
PJD3_k127_3966648_4 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001309 263.0
PJD3_k127_3966648_5 (HIT) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000009677 229.0
PJD3_k127_3966648_6 metal-binding, possibly nucleic acid-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000002908 209.0
PJD3_k127_3966648_7 - - - - 0.0000000000000000000000000000000000002042 140.0
PJD3_k127_3966648_8 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000001654 102.0
PJD3_k127_3967615_0 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 458.0
PJD3_k127_3967615_1 TIGRFAM diguanylate cyclase (GGDEF) domain K13069,K13590,K18967 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0016740,GO:0016772,GO:0016779,GO:0019825,GO:0020037,GO:0036094,GO:0042165,GO:0043167,GO:0043169,GO:0046906,GO:0048037,GO:0052621,GO:0070025,GO:0097159,GO:1901363 2.7.7.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 454.0
PJD3_k127_3967615_2 PFAM TonB-dependent Receptor Plug Domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 426.0
PJD3_k127_3982243_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 2.813e-194 623.0
PJD3_k127_3982243_1 cytochrome C oxidoreductase subunit B - - - 0.0000000000000000000000000000000000000000000000000000000001323 203.0
PJD3_k127_3982243_2 Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein K07147 - - 0.000000000000000000000000000000000000000008005 153.0
PJD3_k127_4026459_0 arginine decarboxylase K01585 - 4.1.1.19 0.0 1214.0
PJD3_k127_4026459_1 histidyl-tRNA synthetase K01892 - 6.1.1.21 2.769e-251 780.0
PJD3_k127_4026459_2 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 426.0
PJD3_k127_4026459_3 Chaperone for flagella basal body P-ring formation K02386 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 425.0
PJD3_k127_4026459_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008768 348.0
PJD3_k127_4026459_5 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007816 329.0
PJD3_k127_4026459_6 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000002049 248.0
PJD3_k127_4026459_7 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000008355 102.0
PJD3_k127_4029792_0 Diguanylate cyclase - - - 0.0 1382.0
PJD3_k127_4029792_1 Cell division protein FtsI penicillin-binding protein K03587 - 3.4.16.4 0.0 1094.0
PJD3_k127_4029792_10 Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body K02387 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002426 246.0
PJD3_k127_4029792_12 Flagellar hook-basal body complex protein FliE K02408 - - 0.000000000000000000000000000000000000000000000000002442 182.0
PJD3_k127_4029792_13 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000002853 125.0
PJD3_k127_4029792_2 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 3.415e-230 714.0
PJD3_k127_4029792_3 Belongs to the SEDS family K03588 - - 3.259e-221 690.0
PJD3_k127_4029792_4 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 474.0
PJD3_k127_4029792_5 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003163 469.0
PJD3_k127_4029792_6 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000368 424.0
PJD3_k127_4029792_7 2-keto-4-pentenoate hydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 336.0
PJD3_k127_4029792_8 radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0042221,GO:0050896,GO:0051716,GO:0070887,GO:0071241,GO:0071248,GO:0071281 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009015 331.0
PJD3_k127_4029792_9 Belongs to the flagella basal body rod proteins family K02388 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 305.0
PJD3_k127_4049372_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1010.0
PJD3_k127_4049372_1 peptidase M23 - - - 2.274e-275 850.0
PJD3_k127_4049372_2 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 584.0
PJD3_k127_4049372_3 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535 - 3.5.1.108 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006194 573.0
PJD3_k127_4049372_4 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 310.0
PJD3_k127_4049372_5 COG1214 Inactive homolog of metal-dependent proteases - - - 0.00000000000000000000000000000000000000000001255 166.0
PJD3_k127_4049372_6 nucleic-acid-binding protein implicated in transcription termination - - - 0.0000000000001018 74.0
PJD3_k127_408893_0 Efflux pump membrane transporter K03296,K18138 - - 0.0 1822.0
PJD3_k127_408893_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006732 610.0
PJD3_k127_408893_2 TIGRFAM RND efflux system, outer membrane lipoprotein, NodT family K18139 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002347 308.0
PJD3_k127_408893_3 DNA-binding transcription factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006391 279.0
PJD3_k127_4099476_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 4.187e-227 704.0
PJD3_k127_4099476_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006414 508.0
PJD3_k127_4099476_2 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 390.0
PJD3_k127_4099476_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00411 - 1.10.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 348.0
PJD3_k127_4117770_0 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006706 450.0
PJD3_k127_4117770_1 Domain of unknown function (DUF3943) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008053 428.0
PJD3_k127_4117770_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 316.0
PJD3_k127_4117770_3 Histidine kinase K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000002371 251.0
PJD3_k127_41331_0 bacterial OsmY and nodulation domain K04065 GO:0005575,GO:0005623,GO:0006457,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0009628,GO:0009987,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464,GO:0050896,GO:0061077 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 295.0
PJD3_k127_41331_1 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001012 279.0
PJD3_k127_41331_2 Histidine Phosphotransfer domain - - - 0.000000000000000000000000000000000000000001123 166.0
PJD3_k127_41331_3 Outer membrane protein beta-barrel domain - - - 0.0000000008055 66.0
PJD3_k127_41462_0 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 0.0 1201.0
PJD3_k127_41462_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 2.829e-208 648.0
PJD3_k127_41462_2 COG1034 NADH dehydrogenase NADH ubiquinone oxidoreductase 75 kD subunit (chain G) K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000502 582.0
PJD3_k127_41462_3 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 545.0
PJD3_k127_41462_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 439.0
PJD3_k127_41462_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002343 333.0
PJD3_k127_41462_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000006459 190.0
PJD3_k127_4155499_0 Saccharopine dehydrogenase K00290 - 1.5.1.7 2.677e-261 805.0
PJD3_k127_4155499_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005386 606.0
PJD3_k127_4155499_2 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 544.0
PJD3_k127_4155499_3 Family of unknown function (DUF695) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 434.0
PJD3_k127_4155499_4 flagellar motor switch protein K02410 GO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004375 381.0
PJD3_k127_4155499_5 NlpC/P60 family K13694,K13695 - 3.4.17.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005306 372.0
PJD3_k127_4155499_6 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 - 3.1.3.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 327.0
PJD3_k127_4155499_7 Recycling of diacylglycerol produced during the turnover of membrane phospholipid K00901 - 2.7.1.107 0.00000000000000000000000000000000000000000000000000008672 190.0
PJD3_k127_4155499_8 - - - - 0.0000000000000000000000000000000000000000001034 159.0
PJD3_k127_4163527_0 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K02584 - - 0.0 1019.0
PJD3_k127_4163527_1 fumarate reductase, flavoprotein subunit K00239,K00244 - 1.3.5.1,1.3.5.4 2.105e-321 987.0
PJD3_k127_4163527_2 COG2199 FOG GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 518.0
PJD3_k127_4163527_3 AhpC/TSA family K11065 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009994 353.0
PJD3_k127_4163527_4 Ankyrin repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005646 258.0
PJD3_k127_4163527_5 nitrogen fixation protein FixT K02593 - - 0.000000000000000000000000000000000001112 139.0
PJD3_k127_4163527_6 aldo keto reductase - - - 0.000000000000000000000000000000114 127.0
PJD3_k127_4169517_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 5.627e-301 928.0
PJD3_k127_4169517_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006435 576.0
PJD3_k127_4169517_2 Domain of unknown function (DUF4143) K07133 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000258 563.0
PJD3_k127_4169517_3 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004981 494.0
PJD3_k127_4169517_4 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 454.0
PJD3_k127_4169517_5 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 297.0
PJD3_k127_4181417_0 argininosuccinate lyase K01755 - 4.3.2.1 4.345e-286 882.0
PJD3_k127_4181417_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000001056 216.0
PJD3_k127_4181417_2 redox protein regulator of disulfide bond formation K07397 - - 0.0000000000000000000000000000000000000000001728 159.0
PJD3_k127_4181417_3 Belongs to the UbiD family K03182 - 4.1.1.98 0.0000000000000000000000001694 105.0
PJD3_k127_4182547_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 3.756e-265 818.0
PJD3_k127_4182547_1 Aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005382 561.0
PJD3_k127_4182547_2 PFAM tRNA synthetase class II (G H P and S) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 522.0
PJD3_k127_4182547_3 Flagellar FliJ protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000722 238.0
PJD3_k127_4233867_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005341 452.0
PJD3_k127_4233867_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000117 260.0
PJD3_k127_4233867_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.000000000000000000000000000000000000000000000008848 172.0
PJD3_k127_4256987_0 Diguanylate cyclase with PAS PAC sensor - - - 4.786e-256 795.0
PJD3_k127_4304467_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 3.224e-249 770.0
PJD3_k127_4304467_1 twitching motility protein K02669 - - 4e-234 728.0
PJD3_k127_4304467_2 Chorismate mutase prephenate dehydratase K14170 - 4.2.1.51,5.4.99.5 5.609e-218 679.0
PJD3_k127_4304467_3 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 4.361e-211 658.0
PJD3_k127_4304467_4 permease K11720 - - 5.016e-200 626.0
PJD3_k127_4304467_5 HAD-superfamily hydrolase, subfamily IIA K02566 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 459.0
PJD3_k127_4304467_6 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 436.0
PJD3_k127_4304467_7 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 340.0
PJD3_k127_4304467_8 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 339.0
PJD3_k127_4309645_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1216.0
PJD3_k127_4309645_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 2.469e-283 871.0
PJD3_k127_4309645_2 Pseudouridine synthase K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000482 580.0
PJD3_k127_4309645_3 Pseudouridine synthase K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 546.0
PJD3_k127_4309645_4 Phospholipid glycerol acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005857 338.0
PJD3_k127_4373605_0 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 7.285e-240 745.0
PJD3_k127_4373605_1 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 365.0
PJD3_k127_4373605_2 Mycolic acid cyclopropane synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002025 349.0
PJD3_k127_4434970_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.0 1239.0
PJD3_k127_4434970_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 1.5e-323 994.0
PJD3_k127_4434970_2 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 2.375e-262 824.0
PJD3_k127_4434970_3 COGs COG0665 Glycine D-amino acid oxidase (deaminating) K15461 - 2.1.1.61 8.53e-209 652.0
PJD3_k127_4434970_4 chemotaxis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005239 449.0
PJD3_k127_4434970_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001987 238.0
PJD3_k127_4434970_6 Desulfoferrodoxin ferrous iron-binding K05919 - 1.15.1.2 0.0000000000000000000000000000000000000000000000000000000000000000004973 228.0
PJD3_k127_4434970_7 sequence-specific DNA binding - - - 0.000000000000000000000000000000001698 130.0
PJD3_k127_4434970_8 HEPN domain - - - 0.000000000000003279 80.0
PJD3_k127_4434970_9 Nucleotidyltransferase domain - - - 0.0000002292 57.0
PJD3_k127_444177_0 Histidine Phosphotransfer domain - - - 0.0000000000000000000000000000000000000000001263 169.0
PJD3_k127_444177_1 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000002093 168.0
PJD3_k127_4444400_0 4Fe-4S dicluster domain - - - 1.539e-218 679.0
PJD3_k127_4444400_1 Nitrate reductase delta subunit - - - 0.0000000000000000000000000000000000000000000000000000000002082 209.0
PJD3_k127_4608143_0 Chemotaxis phosphatase CheX - - - 5.528e-245 760.0
PJD3_k127_4608143_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 5.715e-241 747.0
PJD3_k127_4608143_2 Potassium channel protein K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000518 413.0
PJD3_k127_4608143_3 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001756 284.0
PJD3_k127_4608143_4 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000006252 184.0
PJD3_k127_4608143_5 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000000000005384 120.0
PJD3_k127_4635400_0 Protein of unknown function (DUF3137) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 567.0
PJD3_k127_4635400_1 a g-specific adenine glycosylase K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 492.0
PJD3_k127_4635400_2 Belongs to the TtcA family K14058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 472.0
PJD3_k127_4635400_3 hmm pf01205 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008746 280.0
PJD3_k127_4635400_4 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003528 241.0
PJD3_k127_4635400_5 Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively K18284 - 3.2.2.30,3.2.2.9 0.000000000000000000000000000000000000002591 149.0
PJD3_k127_4635400_6 Transglutaminase-like - - - 0.00000000000000000000000009036 115.0
PJD3_k127_4635400_7 - - - - 0.0000000000000000000141 96.0
PJD3_k127_4638770_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1623.0
PJD3_k127_4638770_1 Diguanylate cyclase - - - 5.544e-286 883.0
PJD3_k127_4638770_2 Lipopolysaccharide-assembly - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001651 254.0
PJD3_k127_4638770_3 - - - - 0.000000000000000000000000000000000000002294 147.0
PJD3_k127_4650995_0 Divergent polysaccharide deacetylase K09798 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 464.0
PJD3_k127_4650995_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 366.0
PJD3_k127_4650995_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003771 353.0
PJD3_k127_4650995_3 DNA processing protein K04096 - - 0.0000000000000000000141 94.0
PJD3_k127_4654637_0 Diguanylate cyclase - - - 5.815e-229 714.0
PJD3_k127_4654637_1 D-alanyl-D-alanine carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 449.0
PJD3_k127_4654637_2 CMP dCMP deaminase K01487 - 3.5.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000003969 246.0
PJD3_k127_4654637_3 Diguanylate cyclase - - - 0.0000000000000000000000000000000006399 131.0
PJD3_k127_4654637_4 COG1393 Arsenate reductase and related K00537 - 1.20.4.1 0.0000000002421 60.0
PJD3_k127_4679999_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 6.98e-246 760.0
PJD3_k127_4679999_1 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000332 265.0
PJD3_k127_4679999_2 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000000000000004732 208.0
PJD3_k127_4679999_3 phosphoribosyltransferase K00769 - 2.4.2.22 0.00000000000000000000000000157 112.0
PJD3_k127_4679999_4 metal-binding, possibly nucleic acid-binding protein - - - 0.000000000000000000000062 98.0
PJD3_k127_4684327_0 Paralysed flagella protein - - - 0.0 1221.0
PJD3_k127_4684327_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 1.479e-300 925.0
PJD3_k127_4684327_2 COG1008 NADH ubiquinone oxidoreductase subunit 4 (chain M) K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002354 259.0
PJD3_k127_4684327_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000004646 134.0
PJD3_k127_4693749_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 4.122e-298 915.0
PJD3_k127_4693749_1 sulfate adenylyltransferase K00958 - 2.7.7.4 2.292e-248 769.0
PJD3_k127_4693749_2 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 7.046e-207 647.0
PJD3_k127_4693749_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001759 272.0
PJD3_k127_4693749_4 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.0000000000000000000000000000000000000000000000000000000000001426 213.0
PJD3_k127_4693749_5 transcriptional regulator - - - 0.000002123 59.0
PJD3_k127_4696947_0 Catalyzes carboxymethyl transfer from carboxy-S- adenosyl-L-methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5-carboxymethoxyuridine (cmo5U) at position 34 in tRNAs K15257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008543 578.0
PJD3_k127_4696947_1 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 482.0
PJD3_k127_4696947_2 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006855 469.0
PJD3_k127_4696947_3 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007623 371.0
PJD3_k127_4696947_4 Transglutaminase-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009451 298.0
PJD3_k127_4696947_5 thioesterase K02614 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000314 280.0
PJD3_k127_4696947_6 Cytochrome c family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002202 262.0
PJD3_k127_4699788_0 Domain of unknown function (DUF3458_C) ARM repeats K01256 - 3.4.11.2 0.0 1481.0
PJD3_k127_4699788_1 Hpt sensor hybrid histidine kinase - - - 0.0 1232.0
PJD3_k127_4699788_2 COGs COG1252 NADH dehydrogenase FAD-containing subunit K17218 - 1.8.5.4 0.0 1016.0
PJD3_k127_4699788_3 Belongs to the anaerobic coproporphyrinogen-III oxidase family - GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 - 3.675e-292 897.0
PJD3_k127_4699788_4 Glycerol-3-phosphate dehydrogenase K11473 - - 4.694e-280 861.0
PJD3_k127_4699788_5 Fad-dependent pyridine nucleotide-disulfide oxidoreductase K17218 - 1.8.5.4 2.525e-207 649.0
PJD3_k127_4699788_6 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003577 483.0
PJD3_k127_4699788_7 COG0242 N-formylmethionyl-tRNA deformylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007982 479.0
PJD3_k127_4699788_8 signal transduction protein containing EAL and modified HD-GYP domains - - - 0.000000000000000000000000000000000000000000002164 165.0
PJD3_k127_4699788_9 - - - - 0.00000000000000000000000007629 106.0
PJD3_k127_4699970_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 3.984e-281 874.0
PJD3_k127_4699970_1 Periplasmic binding proteins and sugar binding domain of LacI family K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 484.0
PJD3_k127_4699970_2 Iron-binding zinc finger CDGSH type - - - 0.000000000000000000000000000000000000000000000001652 173.0
PJD3_k127_4699970_3 auxin efflux carrier K07088 - - 0.00000000000000000000000000000003317 126.0
PJD3_k127_4701797_0 flagellar motor switch protein K02410 GO:0001539,GO:0005575,GO:0005623,GO:0006928,GO:0008150,GO:0009288,GO:0009987,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0044464,GO:0048870,GO:0051179,GO:0051674,GO:0071973,GO:0071978,GO:0097588 - 2.266e-199 623.0
PJD3_k127_4701797_1 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009088 509.0
PJD3_k127_4703354_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 603.0
PJD3_k127_4703354_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006122 380.0
PJD3_k127_4703354_2 membrane K08973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002664 295.0
PJD3_k127_4703354_3 D,D-heptose 1,7-bisphosphate phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007307 294.0
PJD3_k127_4703354_4 Thioredoxin K03672 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 283.0
PJD3_k127_4703354_5 cation transport ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004947 279.0
PJD3_k127_4703354_6 Sigma 54 modulation protein / S30EA ribosomal protein K05808 - - 0.0000000000000000000000000000000000000000000000000000000007238 202.0
PJD3_k127_4703354_7 GlutRNAGln amidotransferase subunit D K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000002196 167.0
PJD3_k127_4703354_8 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000006875 82.0
PJD3_k127_4703413_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 6.105e-261 807.0
PJD3_k127_4703413_1 Belongs to the NifD NifK NifE NifN family K02592 - - 1.174e-247 766.0
PJD3_k127_4703413_2 Low-potential electron donor to a number of redox enzymes K03839 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 331.0
PJD3_k127_4703413_3 Nitrogen fixation protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001411 272.0
PJD3_k127_4703413_4 NifZ domain K02597 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003224 239.0
PJD3_k127_4703413_5 Nitrogen fixation protein NifW K02595 - - 0.0000000000000000000000000000000000000000000000000000000000000000003989 230.0
PJD3_k127_4703413_6 Ferredoxin - - - 0.00000000000000000000000000000000000000000000000000000004872 196.0
PJD3_k127_4703413_7 Dinitrogenase iron-molybdenum cofactor biosynthesis protein K02596 - - 0.000000000000000000000000000000000000009825 149.0
PJD3_k127_4704164_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0 1178.0
PJD3_k127_4704164_1 abc transporter atp-binding protein - - - 0.0 1052.0
PJD3_k127_4704164_10 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003206 394.0
PJD3_k127_4704164_11 ABC transporter, ATP-binding protein K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 327.0
PJD3_k127_4704164_12 protein of Gammaproteobacteria UniRef RepID - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 301.0
PJD3_k127_4704164_13 COG2199 FOG GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000005832 211.0
PJD3_k127_4704164_14 Translation initiation factor SUI1 K03113 - - 0.00000000000000000000000000000000000000000000000000000000008722 205.0
PJD3_k127_4704164_15 RNA-binding protein - - - 0.00000000000000000000000000000000000000000000000000000397 190.0
PJD3_k127_4704164_16 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000003012 153.0
PJD3_k127_4704164_17 Protein of unknown function (DUF1653) - - - 0.0000000000000000000000000000000000003658 139.0
PJD3_k127_4704164_18 S4 domain K14761 - - 0.000000000000000000000000000001135 122.0
PJD3_k127_4704164_19 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00000000000001358 78.0
PJD3_k127_4704164_2 ATP-grasp domain - - - 2.23e-285 888.0
PJD3_k127_4704164_3 Belongs to the peptidase S41A family K03797 - 3.4.21.102 8.052e-256 792.0
PJD3_k127_4704164_4 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 - 1.2.1.41 5.848e-237 736.0
PJD3_k127_4704164_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 609.0
PJD3_k127_4704164_6 Heat shock 70 kDa protein K04043 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003844 530.0
PJD3_k127_4704164_7 Belongs to the SAICAR synthetase family K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 461.0
PJD3_k127_4704164_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009855 444.0
PJD3_k127_4704164_9 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 419.0
PJD3_k127_4707343_0 cheY-homologous receiver domain K03412,K03413 - 3.1.1.61,3.5.1.44 1.108e-231 725.0
PJD3_k127_4707343_1 GAF domain K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 374.0
PJD3_k127_4707343_2 Chemotaxis protein CheW K03408 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000262 265.0
PJD3_k127_4707343_3 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000271 239.0
PJD3_k127_4716568_0 Histidine kinase - - - 1.462e-228 711.0
PJD3_k127_4716568_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 339.0
PJD3_k127_4716568_2 outer membrane porin, OprD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000007033 235.0
PJD3_k127_4716568_3 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000004569 151.0
PJD3_k127_4716568_4 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.0000000000000000004157 86.0
PJD3_k127_4729040_0 FAD binding domain K07007 - - 4.997e-228 710.0
PJD3_k127_4729040_1 Belongs to the BI1 family K19416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 444.0
PJD3_k127_4729040_2 thiamine-phosphate diphosphorylase activity K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000001993 165.0
PJD3_k127_4729040_3 - - - - 0.00000000000000000000000000000001574 126.0
PJD3_k127_4730047_0 Sulfatase - - - 0.0 1158.0
PJD3_k127_4730047_1 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 0.0 1009.0
PJD3_k127_4730047_2 Abc transporter K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 306.0
PJD3_k127_4730047_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001879 261.0
PJD3_k127_4730047_4 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008029 254.0
PJD3_k127_4730047_5 Haem-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000005227 222.0
PJD3_k127_4735094_0 Predicted permease K07089 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 583.0
PJD3_k127_4735094_1 COG2199 FOG GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008775 540.0
PJD3_k127_4735094_2 Probably functions as a manganese efflux pump - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 307.0
PJD3_k127_4735094_3 Rhodanese-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000268 228.0
PJD3_k127_4735556_0 Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2- amino-6-oxopimelate using succinyl-CoA K00674 - 2.3.1.117 3.209e-248 767.0
PJD3_k127_4735556_1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - - - 1.223e-241 757.0
PJD3_k127_4735556_10 Flagellar hook protein flgE - - - 0.0000000000000000000000000000000000006263 141.0
PJD3_k127_4735556_11 - - - - 0.00000000000000000001541 93.0
PJD3_k127_4735556_2 Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4) K01433 - 3.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003063 548.0
PJD3_k127_4735556_3 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 527.0
PJD3_k127_4735556_4 phage repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 428.0
PJD3_k127_4735556_5 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 408.0
PJD3_k127_4735556_6 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009126 319.0
PJD3_k127_4735556_7 - - - - 0.0000000000000000000000000000000000000000000000000000001397 196.0
PJD3_k127_4735556_8 Ankyrin repeat - - - 0.000000000000000000000000000000000000000000000000000008174 194.0
PJD3_k127_4735556_9 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000001477 188.0
PJD3_k127_4741601_0 Diguanylate cyclase phosphodiesterase - - - 0.0 1231.0
PJD3_k127_4741601_1 Histidine kinase K02482,K07710 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007858 596.0
PJD3_k127_4741601_2 M18 family aminopeptidase K01267 - 3.4.11.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001097 415.0
PJD3_k127_4741749_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 4.444e-221 687.0
PJD3_k127_4741749_1 riboflavin biosynthesis protein K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000128 575.0
PJD3_k127_4741749_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 417.0
PJD3_k127_4741749_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005377 266.0
PJD3_k127_4741749_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000000000008015 153.0
PJD3_k127_4772528_0 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 525.0
PJD3_k127_4772528_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000004535 184.0
PJD3_k127_4772528_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000003946 87.0
PJD3_k127_4772528_3 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000001563 83.0
PJD3_k127_4780944_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1202.0
PJD3_k127_4780944_1 Diguanylate cyclase - - - 1.769e-284 878.0
PJD3_k127_4780944_2 Lipopolysaccharide-assembly - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004122 261.0
PJD3_k127_4809851_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002689 276.0
PJD3_k127_4809851_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000785 232.0
PJD3_k127_4809851_2 Dinitrogenase iron-molybdenum cofactor - - - 0.000000000000000000000000000000000000000000000000000000000000007709 218.0
PJD3_k127_4809851_3 Sel1-like repeats. K07126 - - 0.0000000000000000000000000000000000000000000000000000000000004403 212.0
PJD3_k127_4809851_4 - - - - 0.00000000000000000000000000000000000000004639 154.0
PJD3_k127_4811040_0 NMT1/THI5 like K02030 - - 0.0 1250.0
PJD3_k127_4811040_1 glutamine synthetase K01915 - 6.3.1.2 2.564e-321 983.0
PJD3_k127_4811040_2 peptidase U32 family K08303 - - 4.216e-277 853.0
PJD3_k127_4811040_3 histidinol phosphate phosphatase K04486 - 3.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 491.0
PJD3_k127_4811040_4 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009254 449.0
PJD3_k127_4811040_5 Protein of unknown function DUF89 K09116 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 452.0
PJD3_k127_4811040_6 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006234 403.0
PJD3_k127_4811040_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009557 294.0
PJD3_k127_4811040_8 Protein of unknown function (DUF3972) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007438 291.0
PJD3_k127_4816331_0 Histidine kinase K02484 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009646 576.0
PJD3_k127_4816331_1 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 510.0
PJD3_k127_4816331_2 Chemotaxis protein CheY K02483 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 300.0
PJD3_k127_4816331_3 - - - - 0.000000000000000000000000000000000000002231 147.0
PJD3_k127_4817253_0 chemotaxis protein - - - 7.49e-321 991.0
PJD3_k127_4817253_1 Sulfatase-modifying factor enzyme 1 - - - 2.723e-260 805.0
PJD3_k127_4817253_2 chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 620.0
PJD3_k127_4817253_3 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001715 250.0
PJD3_k127_4819569_0 Belongs to the 5'-nucleotidase family K01119,K17224 - 3.1.3.6,3.1.4.16 0.0 1191.0
PJD3_k127_4819569_1 Histidine kinase - - - 1.621e-208 653.0
PJD3_k127_4819569_2 Receptor - - - 2.638e-202 639.0
PJD3_k127_4819569_3 phosphorelay sensor kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005673 531.0
PJD3_k127_4819569_4 Thiosulfate-oxidizing multienzyme system protein SoxA K17222 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 457.0
PJD3_k127_4819569_5 Cytochrome c K17223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004827 346.0
PJD3_k127_4819569_6 Sulfur oxidation protein SoxY K17226 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 286.0
PJD3_k127_4819569_7 oxidation protein SoxZ K17227 - - 0.00000000000000000000000000000000000000000000000000000000000001562 215.0
PJD3_k127_4819569_8 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000001122 179.0
PJD3_k127_4829887_0 mechanosensitive ion channel - - - 9.92e-294 907.0
PJD3_k127_4829887_1 MiaB-like tRNA modifying enzyme - - - 1.113e-235 734.0
PJD3_k127_4829887_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 1.938e-200 627.0
PJD3_k127_4829887_3 domain protein K09944 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 465.0
PJD3_k127_4838104_0 FIST C domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 333.0
PJD3_k127_4838104_1 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002727 260.0
PJD3_k127_4838104_2 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000001398 175.0
PJD3_k127_4838104_3 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.000000000000000000000000000000000000003224 162.0
PJD3_k127_4854313_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 3.078e-199 622.0
PJD3_k127_4854313_1 ubiquinol cytochrome c oxidoreductase, cytochrome c1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 589.0
PJD3_k127_4854313_2 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000255 488.0
PJD3_k127_4854313_3 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004136 340.0
PJD3_k127_4854313_4 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000002205 223.0
PJD3_k127_4854313_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001563 222.0
PJD3_k127_4870736_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 359.0
PJD3_k127_4870736_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 302.0
PJD3_k127_4870736_2 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000006837 178.0
PJD3_k127_4870736_3 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000000000000000000001342 128.0
PJD3_k127_4897849_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 1.215e-244 762.0
PJD3_k127_4897849_1 COGs COG1940 Transcriptional regulator sugar kinase K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000369 423.0
PJD3_k127_4897849_2 COG1085 Galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.0000000000000000000000000005284 119.0
PJD3_k127_4897849_3 Starch synthase catalytic domain K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.00009202 45.0
PJD3_k127_4900198_0 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004913 434.0
PJD3_k127_4900198_1 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 370.0
PJD3_k127_4900198_2 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 351.0
PJD3_k127_4900198_4 Aminotransferase K14261 - - 0.0000000000000000000000000000000000004255 139.0
PJD3_k127_4904096_0 COG0659 Sulfate permease and related K03321 - - 9.538e-293 901.0
PJD3_k127_4904096_1 COG0474 Cation transport ATPase K01537 - 3.6.3.8 4.045e-288 904.0
PJD3_k127_4904096_2 LacY proton/sugar symporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004996 593.0
PJD3_k127_4904096_3 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009384 531.0
PJD3_k127_4909148_0 growth of symbiont in host cell K07003 - - 2.304e-306 953.0
PJD3_k127_4909148_1 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009721 465.0
PJD3_k127_4909148_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 464.0
PJD3_k127_4909148_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000627 388.0
PJD3_k127_4909148_6 Zn-ribbon-containing protein involved in phosphonate metabolism K06193 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004689 365.0
PJD3_k127_4909148_7 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.000000000000000000000000000000000000000000000000001357 188.0
PJD3_k127_4942739_0 Pilus assembly protein - - - 7.143e-257 796.0
PJD3_k127_4942739_1 C-terminal domain of metallo-carboxypeptidase - - - 2.117e-222 694.0
PJD3_k127_4942739_2 ErfK YbiS YcfS YnhG family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 567.0
PJD3_k127_4942739_3 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000001802 127.0
PJD3_k127_4952729_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 315.0
PJD3_k127_4952729_1 ABC transporter K02004 - - 0.0000000000000000000000000000000000000000000000000000000000001601 213.0
PJD3_k127_4952729_2 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000001495 126.0
PJD3_k127_4990090_2 general secretion pathway protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000000002394 219.0
PJD3_k127_4990090_3 Prokaryotic N-terminal methylation motif - - - 0.00000000000000000000000000000000000000000000000000001089 193.0
PJD3_k127_4990090_4 - - - - 0.000000000000000000000000000000000000000000000000001472 187.0
PJD3_k127_4990090_5 general secretion pathway protein K02246,K02247,K02456,K02457,K02458,K10924 - - 0.00000000000000000000000000000000000000000000009239 175.0
PJD3_k127_5033296_0 COG0642 Signal transduction histidine kinase - - - 0.0 1117.0
PJD3_k127_5033296_1 Histidine kinase K20972 - - 0.0 1096.0
PJD3_k127_5033296_2 peptidylprolyl isomerase K01802 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 498.0
PJD3_k127_5033296_3 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 403.0
PJD3_k127_5033296_4 Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM) K15256 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 356.0
PJD3_k127_5033296_5 fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000002959 211.0
PJD3_k127_5033296_6 - - - - 0.00000000000000000000000000000000428 128.0
PJD3_k127_5044274_0 von Willebrand factor, type A K07114 - - 1.32e-225 703.0
PJD3_k127_50691_0 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K16881 - 2.7.7.13,5.4.2.8 0.0 1444.0
PJD3_k127_50691_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0 1244.0
PJD3_k127_50691_10 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005401 326.0
PJD3_k127_50691_11 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase K03270 - 3.1.3.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 311.0
PJD3_k127_50691_12 acetyltransferase K00619 - 2.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 300.0
PJD3_k127_50691_13 Lipopolysaccharide transport periplasmic protein lpta K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001813 264.0
PJD3_k127_50691_14 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002371 261.0
PJD3_k127_50691_15 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004242 255.0
PJD3_k127_50691_16 hmm pf01863 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001431 256.0
PJD3_k127_50691_17 - - - - 0.000000000000000000000000000000000000000000003744 168.0
PJD3_k127_50691_18 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000006192 133.0
PJD3_k127_50691_19 - - - - 0.000000000000000001165 86.0
PJD3_k127_50691_2 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 0.0 1199.0
PJD3_k127_50691_3 Belongs to the glycosyl hydrolase 57 family - - - 0.0 1179.0
PJD3_k127_50691_4 penicillin-binding protein K05515 - 3.4.16.4 0.0 1103.0
PJD3_k127_50691_5 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity K01772 - 4.99.1.1,4.99.1.9 2.962e-205 640.0
PJD3_k127_50691_6 D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 K03841 - 3.1.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 531.0
PJD3_k127_50691_7 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 404.0
PJD3_k127_50691_8 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004382 384.0
PJD3_k127_50691_9 Imidazoleglycerol-phosphate dehydratase K01089,K01693 - 3.1.3.15,4.2.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 359.0
PJD3_k127_5070885_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 1.062e-196 617.0
PJD3_k127_5070885_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 485.0
PJD3_k127_5070885_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 368.0
PJD3_k127_5070885_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002571 248.0
PJD3_k127_5070885_4 flagellar hook-associated protein K02396 - - 0.000000000000000000000000000000000000000000000000000000000000000001436 228.0
PJD3_k127_5070885_5 response regulator K02483 - - 0.00000000000000000000000000000000000000000000000000009347 188.0
PJD3_k127_5070885_6 Rod binding protein - - - 0.00000000000000000000000000000000000000000000000004633 179.0
PJD3_k127_5070885_7 Anti-sigma-28 factor, FlgM - - - 0.00000000000000000000000000472 111.0
PJD3_k127_5083818_0 outer membrane porin, OprD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000989 581.0
PJD3_k127_5083818_1 PFAM ATP-binding region, ATPase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 348.0
PJD3_k127_5083818_2 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000005915 245.0
PJD3_k127_5083818_3 PAS fold K03776 - - 0.000000000000000000000000000000000000000000000000000000000000000000009773 241.0
PJD3_k127_5083818_4 PAS sensor protein - - - 0.0000000000000000000000000000000000000000000000000000000000001941 215.0
PJD3_k127_5083818_5 chemotaxis protein - - - 0.0000000000000000003175 95.0
PJD3_k127_5236783_0 Nitrogenase cofactor biosynthesis protein NifB K02585 - - 5.515e-306 938.0
PJD3_k127_5236783_1 FIST N domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 432.0
PJD3_k127_523921_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 4.505e-221 691.0
PJD3_k127_523921_1 Domain of Unknown Function (DUF748) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 423.0
PJD3_k127_523921_2 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000006464 226.0
PJD3_k127_52422_0 Belongs to the agmatine deiminase family - - - 8.677e-205 638.0
PJD3_k127_52422_1 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 450.0
PJD3_k127_5267440_0 ABC transporter K11085 - - 1.56e-321 990.0
PJD3_k127_5267440_1 Belongs to the peptidase M16 family - - - 3.331e-251 782.0
PJD3_k127_5267440_2 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 3.039e-229 711.0
PJD3_k127_5267440_3 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 2.042e-207 647.0
PJD3_k127_5267440_4 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000001951 117.0
PJD3_k127_5268274_0 integral membrane protein (DUF6 domain protein) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002287 257.0
PJD3_k127_5268274_1 tetR family K16137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006416 256.0
PJD3_k127_5268274_2 PFAM Isochorismatase family - - - 0.0000000000000000000000000000000000000000000000000000000000000001267 227.0
PJD3_k127_5268274_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000000000003186 222.0
PJD3_k127_5268274_4 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000003046 160.0
PJD3_k127_52710_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 1.057e-237 736.0
PJD3_k127_52710_1 protein involved in exopolysaccharide biosynthesis - - - 6.274e-237 738.0
PJD3_k127_52710_2 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000886 526.0
PJD3_k127_52710_3 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002781 339.0
PJD3_k127_52710_4 Glutamate-1-semialdehyde aminotransferase K01845 - 5.4.3.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 328.0
PJD3_k127_5288348_0 Belongs to the heme-copper respiratory oxidase family K00404 - 1.9.3.1 0.0 1002.0
PJD3_k127_5288348_1 Belongs to the CarA family K01956 - 6.3.5.5 3.015e-237 735.0
PJD3_k127_5288348_2 protein conserved in bacteria K09804 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002942 341.0
PJD3_k127_5288348_3 cytochrome c oxidase, cbb3-type, subunit II K00405 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001745 321.0
PJD3_k127_5288348_4 PDP protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 282.0
PJD3_k127_5288348_5 Flagellar FliJ protein - - - 0.00000000000000000000000000000000000000000000000000000002418 198.0
PJD3_k127_5294787_0 Thiol disulfide interchange protein K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006157 422.0
PJD3_k127_5294787_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001869 311.0
PJD3_k127_5294787_2 Protein of unknown function, DUF255 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001599 231.0
PJD3_k127_5294787_3 oxygen carrier activity - - - 0.0000000000000000000000000000000000000000000000000000000000004006 212.0
PJD3_k127_5296449_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0 1450.0
PJD3_k127_5296449_1 Radical SAM - - - 2.629e-293 904.0
PJD3_k127_5296449_2 Receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 541.0
PJD3_k127_5311615_0 TonB dependent receptor K02014 - - 0.0 1135.0
PJD3_k127_5311615_1 Nudix domain K08077 - 3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 328.0
PJD3_k127_5311615_2 peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002333 251.0
PJD3_k127_5311615_3 Belongs to the agmatine deiminase family - - - 0.0000000000000000000000000001955 113.0
PJD3_k127_5335211_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.735e-212 661.0
PJD3_k127_5335211_1 COG1883 Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit K01572 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 439.0
PJD3_k127_5335211_2 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 415.0
PJD3_k127_5335211_3 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 323.0
PJD3_k127_5335211_4 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000005132 232.0
PJD3_k127_5342100_0 TonB dependent receptor K02014,K16089 - - 1.096e-303 937.0
PJD3_k127_5342100_1 Rubrerythrin - - - 0.0000000004406 60.0
PJD3_k127_5348808_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.0 1280.0
PJD3_k127_5348808_1 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004535 365.0
PJD3_k127_5348808_2 Belongs to the NiCoT transporter (TC 2.A.52) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007111 346.0
PJD3_k127_5348808_3 hydrogenase maturation protease K03605 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004125 334.0
PJD3_k127_5348808_4 hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 321.0
PJD3_k127_5348808_5 ParE toxin of type II toxin-antitoxin system, parDE - - - 0.0000000000000000000000000000000000000000000000000000000452 196.0
PJD3_k127_5348808_6 HypF finger - - - 0.000000000000000000000000000000000000000002048 177.0
PJD3_k127_5348808_7 Putative addiction module component - - - 0.000000000000000000000000000000000000000907 148.0
PJD3_k127_5348808_8 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide - - - 0.000000000000000000000002157 119.0
PJD3_k127_5348808_9 Hydrogenase K04652 - - 0.000000000000008379 74.0
PJD3_k127_5355356_0 fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 3.604e-312 960.0
PJD3_k127_5355356_1 COGs COG1653 ABC-type sugar transport system periplasmic component K02027 - - 2.1e-265 821.0
PJD3_k127_5355356_2 fumarate reductase, iron-sulfur protein K00245 - 1.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 415.0
PJD3_k127_5355356_3 Belongs to the UPF0234 family K09767 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 298.0
PJD3_k127_5355356_4 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006047 257.0
PJD3_k127_5358168_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1195.0
PJD3_k127_5358168_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007597 437.0
PJD3_k127_5358168_2 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 426.0
PJD3_k127_5358168_3 Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum K13626 - - 0.0000000000000000000000000000000000000000000000000000000000000000002263 230.0
PJD3_k127_5373810_0 chaperone-mediated protein folding - - - 1.882e-210 661.0
PJD3_k127_5373810_1 Fic/DOC family N-terminal - - - 1.29e-200 627.0
PJD3_k127_5373810_2 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 438.0
PJD3_k127_5373810_3 Belongs to the TrpC family K01609 - 4.1.1.48 0.000000000000000000000000000000000000000000000001573 173.0
PJD3_k127_5373810_4 Uncharacterised protein family (UPF0153) K06940 - - 0.0000000000000000000000000000000000000000000002518 170.0
PJD3_k127_5373810_5 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000001925 156.0
PJD3_k127_5380236_0 4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007593 474.0
PJD3_k127_5380236_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001588 340.0
PJD3_k127_5380236_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002741 301.0
PJD3_k127_5380236_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008998 243.0
PJD3_k127_5415428_0 Glycolate oxidase subunit K00104 - 1.1.3.15 1.255e-292 899.0
PJD3_k127_5415428_1 Plasminogen-binding protein pgbA N-terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003572 455.0
PJD3_k127_5415428_2 peptidase M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000445 440.0
PJD3_k127_5415428_3 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 440.0
PJD3_k127_5418669_0 Diguanylate cyclase phosphodiesterase - - - 0.0 1054.0
PJD3_k127_5418669_1 Glutathionylspermidine synthase - - - 6.433e-196 617.0
PJD3_k127_5418669_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 313.0
PJD3_k127_5418669_3 L-threonylcarbamoyladenylate synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000002323 237.0
PJD3_k127_5418669_4 Belongs to the CarB family K01955 - 6.3.5.5 0.00000000000005905 71.0
PJD3_k127_5451737_0 HlyD membrane-fusion protein of T1SS K12542 - - 3.843e-228 713.0
PJD3_k127_5451737_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005251 267.0
PJD3_k127_5451737_2 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000000000000005306 167.0
PJD3_k127_5451737_3 von Willebrand factor (vWF) type A domain - - - 0.000000000000000000000000000000003937 147.0
PJD3_k127_5451737_4 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.000000000000000000000000000001266 139.0
PJD3_k127_5451737_5 Type I secretion system ATPase K12541 - - 0.0000000000000000000000000000165 118.0
PJD3_k127_5451737_6 COG2931, RTX toxins and related Ca2 -binding proteins K12549 - - 0.0000000005109 70.0
PJD3_k127_5455112_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.0 1025.0
PJD3_k127_5455112_1 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K14086 - - 9.332e-306 945.0
PJD3_k127_5455112_10 - - - - 0.000000000000000000000000000000000000002465 147.0
PJD3_k127_5455112_2 Protein of unknown function (DUF475) K09799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 600.0
PJD3_k127_5455112_3 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 475.0
PJD3_k127_5455112_4 Prolyl 4-hydroxylase alpha subunit homologues. K07394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 445.0
PJD3_k127_5455112_5 NADH dehydrogenase K14087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002313 386.0
PJD3_k127_5455112_6 Biopolymer transporter ExbB K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005945 267.0
PJD3_k127_5455112_7 biopolymer transport protein K03559 - - 0.00000000000000000000000000000000000000000000000000000000000000000000009427 241.0
PJD3_k127_5455112_8 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000003485 200.0
PJD3_k127_5455112_9 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.000000000000000000000000000000000000000000008441 164.0
PJD3_k127_551960_0 DNA helicase K03657 - 3.6.4.12 0.0 1299.0
PJD3_k127_551960_1 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 570.0
PJD3_k127_551960_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004739 491.0
PJD3_k127_551960_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 299.0
PJD3_k127_551960_4 Branched-chain amino acid aminotransferase K02619 - 4.1.3.38 0.0000000000000000000008381 95.0
PJD3_k127_551960_5 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000008758 48.0
PJD3_k127_5577591_0 Sodium calcium exchanger membrane K07300 - - 1.266e-211 661.0
PJD3_k127_5577591_1 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 595.0
PJD3_k127_5577591_2 Belongs to the UPF0246 family K09861 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 412.0
PJD3_k127_5577591_3 Radical SAM - - - 0.00000000000000000000000000000000004921 134.0
PJD3_k127_5636249_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1561.0
PJD3_k127_5636249_1 AsmA-like C-terminal region - - - 0.0 1503.0
PJD3_k127_5636249_10 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 502.0
PJD3_k127_5636249_11 Oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 403.0
PJD3_k127_5636249_12 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) K03634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008382 301.0
PJD3_k127_5636249_13 2-oxoglutarate acceptor oxidoreductase K00176 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000001076 230.0
PJD3_k127_5636249_14 response regulator K02483 - - 0.000000000000000000000000000000000000000000000000000000000000001477 226.0
PJD3_k127_5636249_15 EF-hand domain pair - - - 0.000000000000000000000000000000000000000000000000000000000000003301 223.0
PJD3_k127_5636249_16 Heavy-metal-associated domain - - - 0.000000000000000000000000000000000000000000364 159.0
PJD3_k127_5636249_2 Isocitrate dehydrogenase K00031 - 1.1.1.42 0.0 1401.0
PJD3_k127_5636249_3 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 1.374e-297 914.0
PJD3_k127_5636249_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 1.372e-239 742.0
PJD3_k127_5636249_5 ABC-type transport system involved in lipoprotein release permease component K02004 - - 7.025e-231 719.0
PJD3_k127_5636249_6 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 7.537e-194 606.0
PJD3_k127_5636249_7 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006681 555.0
PJD3_k127_5636249_8 Histidine kinase K02484 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 542.0
PJD3_k127_5636249_9 Co Zn Cd efflux system component K16264 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009784 531.0
PJD3_k127_5648161_0 protein conserved in bacteria K09859 - - 4.44e-229 716.0
PJD3_k127_5648161_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 4.466e-212 660.0
PJD3_k127_5648161_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 373.0
PJD3_k127_5648161_3 Collagen-binding surface adhesin SpaP (Antigen I II family) K07337 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008615 360.0
PJD3_k127_5648161_4 Outer membrane lipoprotein - - - 0.0000000000000000000000000000000000000000000000000001694 188.0
PJD3_k127_5648161_5 serine acetyltransferase K00640 - 2.3.1.30 0.000000000000000000000000000000004485 127.0
PJD3_k127_5648161_6 Bacteriophage replication gene A protein (GPA) - - - 0.000000000000000001951 87.0
PJD3_k127_5648161_7 COG2931 RTX toxins and related Ca2 -binding - - - 0.0000000000000001268 79.0
PJD3_k127_5669474_0 cofactor biosynthesis protein NifE K02587 - - 1.65e-282 869.0
PJD3_k127_5669474_1 Protein of unknown function (DUF1524) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019 630.0
PJD3_k127_5669474_3 mechanosensitive ion channel K03442 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449 429.0
PJD3_k127_5669474_4 Ribosomal RNA adenine dimethylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 329.0
PJD3_k127_5669474_6 Protein required for attachment to host cells - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000311 245.0
PJD3_k127_5669474_7 Belongs to the NifD NifK NifE NifN family K02592 - - 0.00000000000000000000000000000000000000000002163 161.0
PJD3_k127_5669474_8 Nucleotidyltransferase domain K07075 - - 0.00000001156 60.0
PJD3_k127_5669474_9 COG1734 DnaK suppressor protein K06204 - - 0.0000000324 57.0
PJD3_k127_5919767_0 HD domain - - - 9.945e-268 828.0
PJD3_k127_5919767_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 3.953e-266 820.0
PJD3_k127_5919767_2 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 340.0
PJD3_k127_5919767_3 chemotaxis signal transduction protein K03415 - - 0.00000000000000000000000000000000000000001684 169.0
PJD3_k127_5926315_0 Biotin carboxylase K01959,K01961 - 6.3.4.14,6.4.1.1,6.4.1.2 5.494e-297 914.0
PJD3_k127_5926315_1 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001774 523.0
PJD3_k127_5926315_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000573 475.0
PJD3_k127_5926315_3 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 368.0
PJD3_k127_5926315_5 PFAM biotin lipoyl attachment domain-containing protein K01960 - 6.4.1.1 0.0000000000000003844 77.0
PJD3_k127_5936636_0 Mur ligase middle domain K01929 - 6.3.2.10 4.802e-234 728.0
PJD3_k127_5936636_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 8.834e-211 657.0
PJD3_k127_5936636_2 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002928 462.0
PJD3_k127_5936636_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000004575 122.0
PJD3_k127_5952602_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.0 1333.0
PJD3_k127_5952602_1 NYN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000724 492.0
PJD3_k127_5952602_2 dinuclear metal center protein, YbgI K22391 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 476.0
PJD3_k127_5952602_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 446.0
PJD3_k127_5952602_4 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 442.0
PJD3_k127_5952602_5 COG1579 Zn-ribbon protein possibly nucleic acid-binding K07164,K22391 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 436.0
PJD3_k127_5952602_6 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591 371.0
PJD3_k127_5952602_7 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 302.0
PJD3_k127_5952602_8 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004795 291.0
PJD3_k127_5952602_9 Major facilitator superfamily K03762 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001188 250.0
PJD3_k127_5998885_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 GO:0003674,GO:0003824,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.3,1.4.1.4 2.482e-265 820.0
PJD3_k127_5998885_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 1.158e-213 664.0
PJD3_k127_5998885_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 344.0
PJD3_k127_6030987_0 Cytochrome c oxidase accessory protein - - - 1.675e-300 924.0
PJD3_k127_6030987_1 PFAM HI0933 family protein K07007 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 364.0
PJD3_k127_6082852_0 Diguanylate cyclase - - - 0.0 1193.0
PJD3_k127_6082852_1 Methyl-accepting chemotaxis protein (MCP) signaling domain K03406 - - 1.363e-266 829.0
PJD3_k127_6082852_2 Belongs to the DEAD box helicase family K11927 - 3.6.4.13 2.8e-248 770.0
PJD3_k127_6082852_3 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 1.412e-221 696.0
PJD3_k127_6082852_4 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 446.0
PJD3_k127_6082852_5 metal-dependent phosphohydrolase, HD sub domain K07814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002886 453.0
PJD3_k127_6082852_6 chemotaxis protein K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 415.0
PJD3_k127_6082852_7 cyclopropane-fatty-acyl-phospholipid synthase K00574 - 2.1.1.79 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009542 353.0
PJD3_k127_6088751_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 1.522e-249 772.0
PJD3_k127_6088751_1 Belongs to the DEAD box helicase family - - - 8.03e-247 765.0
PJD3_k127_6088751_2 SIR2-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 546.0
PJD3_k127_6088751_3 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 457.0
PJD3_k127_6088751_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 394.0
PJD3_k127_6088751_5 - - - - 0.00000000000000000000000000000000145 137.0
PJD3_k127_6088751_6 RNA binding S1 domain protein K06959 - - 0.00000000000000000000000000000008766 124.0
PJD3_k127_6146864_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1363.0
PJD3_k127_6146864_1 Histidine kinase K02484 - 2.7.13.3 2.168e-255 791.0
PJD3_k127_6146864_10 Ferredoxin K05337 - - 0.000000000000000000000000000000000000000000000000004134 181.0
PJD3_k127_6146864_11 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000001256 161.0
PJD3_k127_6146864_12 Abi-like protein - - - 0.000000000000000000001651 104.0
PJD3_k127_6146864_13 PFAM Excalibur calcium-binding domain - - - 0.0000000000000000002414 95.0
PJD3_k127_6146864_14 Oxygen tolerance - - - 0.000000000000000001033 87.0
PJD3_k127_6146864_15 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000001885 75.0
PJD3_k127_6146864_16 - - - - 0.000000001382 66.0
PJD3_k127_6146864_2 Guanosine pentaphosphate phosphohydrolase K01524 - 3.6.1.11,3.6.1.40 5.095e-253 786.0
PJD3_k127_6146864_3 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006165 583.0
PJD3_k127_6146864_4 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 526.0
PJD3_k127_6146864_5 prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005772 514.0
PJD3_k127_6146864_6 Protein of unknown function (DUF808) K09781 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007647 507.0
PJD3_k127_6146864_7 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007889 469.0
PJD3_k127_6146864_8 oxidoreductase activity K02406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007441 362.0
PJD3_k127_61534_0 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 1.836e-244 757.0
PJD3_k127_61534_1 Uncharacterised protein family (UPF0014) K02069 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001075 252.0
PJD3_k127_61534_2 COGs COG3864 conserved - - - 0.000000000000000000000000000000000000000000000000001395 190.0
PJD3_k127_6187411_0 PFAM CheW domain protein - - - 0.0 1548.0
PJD3_k127_6187411_1 aminopeptidase activity - - - 5.458e-207 646.0
PJD3_k127_6187411_2 alanine dehydrogenase K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005092 462.0
PJD3_k127_6187411_3 Belongs to the MEMO1 family K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008779 411.0
PJD3_k127_6187411_4 - - - - 0.0000000000000000000000000000000000000000000000000000003384 194.0
PJD3_k127_6187411_5 PFAM AMMECR1 domain protein K09141 - - 0.000000000000000001081 85.0
PJD3_k127_6189227_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0 1285.0
PJD3_k127_6189227_1 PFAM EAL domain - - - 0.0 1073.0
PJD3_k127_6189227_2 Histidine kinase K02484 - 2.7.13.3 8.104e-241 749.0
PJD3_k127_6189227_3 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 512.0
PJD3_k127_6189227_4 outer membrane porin, OprD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007146 486.0
PJD3_k127_6189227_5 response regulator K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 413.0
PJD3_k127_6189227_6 involved in molybdopterin and thiamine biosynthesis family 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006107 410.0
PJD3_k127_6189227_7 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 320.0
PJD3_k127_6189227_8 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000001915 184.0
PJD3_k127_6189227_9 Fe2 transport system protein A K04758 - - 0.000000000008768 68.0
PJD3_k127_6196104_0 Type I secretion system ATPase K12541 - - 0.0 1296.0
PJD3_k127_6196104_1 ribosomal protein S1 K02945 - - 0.0 1055.0
PJD3_k127_6196104_2 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.0 1010.0
PJD3_k127_6196104_3 type I secretion membrane fusion protein, HlyD family K02022,K12542 - - 1.496e-233 728.0
PJD3_k127_6196104_4 outer membrane protein, TolC family K12543 - - 4.792e-210 666.0
PJD3_k127_6196104_6 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008748 296.0
PJD3_k127_6196104_8 calcium- and calmodulin-responsive adenylate cyclase activity K01113 - 3.1.3.1 0.00000000000000000000000000000000000000000000000000002468 195.0
PJD3_k127_62228_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K01414 - 3.4.24.70 0.0 1087.0
PJD3_k127_62228_1 Endonuclease Exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004014 584.0
PJD3_k127_62228_2 PFAM CHAD domain containing protein K08296 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 320.0
PJD3_k127_62228_3 outer membrane autotransporter barrel - - - 0.0000000000000000000000000000000000001448 156.0
PJD3_k127_6240038_0 COG1055 Na H antiporter NhaD and related arsenite - - - 1.423e-258 800.0
PJD3_k127_6240038_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 391.0
PJD3_k127_6240038_2 COG1883 Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit K01572 - 4.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000002118 234.0
PJD3_k127_6240038_3 sodium ion export across plasma membrane K01573 GO:0003674,GO:0003824,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0008150,GO:0008948,GO:0015672,GO:0016829,GO:0016830,GO:0016831,GO:0030001,GO:0051179,GO:0051234 4.1.1.3 0.00000000000000000000000000000000004871 139.0
PJD3_k127_6251468_0 Belongs to the heme-copper respiratory oxidase family - - - 1.331e-307 946.0
PJD3_k127_6251468_1 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 7.079e-264 814.0
PJD3_k127_6251468_10 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007067 260.0
PJD3_k127_6251468_11 abc transporter atp-binding protein K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000003687 236.0
PJD3_k127_6251468_12 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000002619 164.0
PJD3_k127_6251468_13 Beta-lactamase superfamily domain - - - 0.00000000000001215 76.0
PJD3_k127_6251468_2 - - - - 7.261e-223 693.0
PJD3_k127_6251468_3 ABC transporter permease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 594.0
PJD3_k127_6251468_4 OmpA MotB domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 582.0
PJD3_k127_6251468_6 - K21817 - 1.13.11.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 496.0
PJD3_k127_6251468_7 Uncharacterised ACR, YagE family COG1723 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 426.0
PJD3_k127_6251468_9 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003242 280.0
PJD3_k127_6260197_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 2.052e-272 839.0
PJD3_k127_6260197_1 Glycosyl transferases group 1 K17249 - 2.4.1.292 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 454.0
PJD3_k127_6260197_2 lipopolysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001698 333.0
PJD3_k127_6260197_3 glycosyl transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007058 317.0
PJD3_k127_6260197_4 Lipopolysaccharide kinase (Kdo/WaaP) family - - - 0.0000000000000000000000000000000009045 132.0
PJD3_k127_6297078_0 Diguanylate cyclase - - - 5.064e-197 617.0
PJD3_k127_6297078_1 Mg chelatase-related protein K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 415.0
PJD3_k127_6297078_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006256 311.0
PJD3_k127_6297078_3 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000003749 86.0
PJD3_k127_6354629_0 permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002546 522.0
PJD3_k127_6354629_1 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000003471 261.0
PJD3_k127_6354629_2 Transcriptional regulator K03892 - - 0.0000000000000000000000000000000000000000000000000000000004311 205.0
PJD3_k127_6354629_3 Involved in arsenical resistance. Thought to form the channel of an arsenite pump K03893 - - 0.00000377 49.0
PJD3_k127_6397951_0 GGDEF domain - - - 1.93e-234 740.0
PJD3_k127_6397951_1 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007211 474.0
PJD3_k127_6397951_2 DnaJ domain protein K05801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 413.0
PJD3_k127_6397951_3 NUDIX domain K16855 - 3.6.1.62,3.6.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005928 360.0
PJD3_k127_6397951_4 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002189 362.0
PJD3_k127_6397951_5 COG0607 Rhodanese-related sulfurtransferase - - - 0.00000000000000000000000000000000000000000000000000000245 193.0
PJD3_k127_6397951_6 - - - - 0.000000000000000000000000000000003708 131.0
PJD3_k127_6397951_7 Putative diguanylate phosphodiesterase - - - 0.000000000000000000001557 94.0
PJD3_k127_6459183_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.0 1071.0
PJD3_k127_6459183_1 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 393.0
PJD3_k127_6459183_2 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002276 324.0
PJD3_k127_6459183_3 GAF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007063 295.0
PJD3_k127_6459183_4 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000000000000000000000004908 245.0
PJD3_k127_6459183_5 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000001323 159.0
PJD3_k127_6459183_6 Protein of unknown function (DUF465) K09794 - - 0.0000000000000000000000000000000000000007488 149.0
PJD3_k127_6459183_7 Biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000002031 147.0
PJD3_k127_6475138_0 PAS domain - - - 2.564e-232 730.0
PJD3_k127_6475138_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 1.31e-205 641.0
PJD3_k127_6475138_2 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005316 585.0
PJD3_k127_6475138_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 283.0
PJD3_k127_6475138_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000003597 165.0
PJD3_k127_6482653_0 Highly conserved protein containing a thioredoxin domain K06888 - - 5e-323 994.0
PJD3_k127_6482653_1 polyphosphate kinase K22468 - 2.7.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002778 535.0
PJD3_k127_6482653_2 threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000193 188.0
PJD3_k127_6527909_0 Co-chaperone-curved DNA binding protein A K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 524.0
PJD3_k127_6527909_1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007634 400.0
PJD3_k127_6527909_2 Transcriptional regulator K13640 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003866 244.0
PJD3_k127_6546192_0 flagellar hook-associated protein K02396 - - 3.778e-264 820.0
PJD3_k127_6546192_1 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034,K12370 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002016 246.0
PJD3_k127_663987_0 Histidine kinase - - - 9.542e-200 629.0
PJD3_k127_663987_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006834 421.0
PJD3_k127_663987_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000005626 166.0
PJD3_k127_670350_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1660.0
PJD3_k127_670350_1 membrane transporter protein K07090 - - 0.00000000000007345 72.0
PJD3_k127_676908_0 Belongs to the ClpA ClpB family K03694,K03695 - - 0.0 1558.0
PJD3_k127_676908_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0 1002.0
PJD3_k127_676908_10 - - - - 0.00000000000000000000000000000000000000000000000000000000000001407 216.0
PJD3_k127_676908_11 Jag_N K06346 - - 0.000000000000000000000000000000000000000000000002248 184.0
PJD3_k127_676908_12 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000009251 136.0
PJD3_k127_676908_13 chemotaxis protein K03415 - - 0.00000000000000000000000000000002187 125.0
PJD3_k127_676908_14 Could be involved in insertion of integral membrane proteins into the membrane - - - 0.00000000000000000000005898 101.0
PJD3_k127_676908_15 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000000002587 87.0
PJD3_k127_676908_2 chemotaxis protein K03407 - 2.7.13.3 7.256e-245 781.0
PJD3_k127_676908_3 Belongs to the peptidase M24B family K01262 - 3.4.11.9 8.674e-244 757.0
PJD3_k127_676908_4 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000421 387.0
PJD3_k127_676908_5 chemotaxis protein K03408 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006503 312.0
PJD3_k127_676908_7 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001029 269.0
PJD3_k127_676908_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002363 256.0
PJD3_k127_676908_9 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000000000000000000000000000000000000000000000000000000000007458 231.0
PJD3_k127_68054_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005046 555.0
PJD3_k127_68054_1 Signal transduction protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009444 479.0
PJD3_k127_68054_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 298.0
PJD3_k127_68060_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 2.272e-236 732.0
PJD3_k127_68060_1 Cytochrome c biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008388 513.0
PJD3_k127_68060_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004348 361.0
PJD3_k127_685955_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0 1058.0
PJD3_k127_685955_1 methyl-accepting chemotaxis protein K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005703 238.0
PJD3_k127_686123_0 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0 1197.0
PJD3_k127_686123_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.0 1043.0
PJD3_k127_686123_2 MlaD protein K02067 - - 7.016e-279 861.0
PJD3_k127_686123_3 Belongs to the GARS family K01945 - 6.3.4.13 3.597e-260 803.0
PJD3_k127_686123_4 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009072 541.0
PJD3_k127_686123_5 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 304.0
PJD3_k127_686123_6 phosphoribosyltransferase K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000005491 235.0
PJD3_k127_686123_7 membrane protein domain - - - 0.000000000000000000000000003097 116.0
PJD3_k127_692118_0 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0 1040.0
PJD3_k127_692118_1 COG0631 Serine threonine protein phosphatase K12132 - 2.7.11.1 9.36e-279 865.0
PJD3_k127_692118_2 COG2223 Nitrate nitrite transporter K02575 - - 7.399e-271 834.0
PJD3_k127_69509_0 fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0 1111.0
PJD3_k127_69509_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240,K00245 - 1.3.5.1,1.3.5.4 9.775e-209 650.0
PJD3_k127_69509_2 Heterodisulfide reductase subunit B K00241 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002475 544.0
PJD3_k127_69509_3 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000003961 118.0
PJD3_k127_700363_0 WD40 repeats - - - 0.0 1059.0
PJD3_k127_700363_1 5'-nucleotidase K01081 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 469.0
PJD3_k127_700363_2 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 435.0
PJD3_k127_700363_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 409.0
PJD3_k127_700363_5 - - - - 0.0000000000000000000000000000000004388 135.0
PJD3_k127_703145_0 PFAM Helicase conserved C-terminal domain K03579 - 3.6.4.13 0.0 1304.0
PJD3_k127_703145_1 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009997 415.0
PJD3_k127_703145_2 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000245 370.0
PJD3_k127_703145_3 HicB family - - - 0.0000000000000000000000000002657 119.0
PJD3_k127_703145_4 HicA toxin of bacterial toxin-antitoxin, - - - 0.00000000000002762 75.0
PJD3_k127_712716_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 3.293e-289 891.0
PJD3_k127_712716_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 5.868e-227 704.0
PJD3_k127_712716_2 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006143 505.0
PJD3_k127_712716_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001528 261.0
PJD3_k127_712716_4 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 - 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000006445 210.0
PJD3_k127_71419_0 Polysaccharide biosynthesis protein K15912 - 4.2.1.135 7.846e-302 932.0
PJD3_k127_71419_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 0.00000000000000000000000000000000000000000000000000000000000561 207.0
PJD3_k127_721997_0 Mitochondrial degradasome RNA helicase subunit C terminal K17675 - 3.6.4.13 0.0 1678.0
PJD3_k127_721997_1 SMART Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007418 454.0
PJD3_k127_721997_2 Nitroreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 373.0
PJD3_k127_721997_3 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 364.0
PJD3_k127_721997_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 344.0
PJD3_k127_721997_5 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000000000000000000000000000000000000163 197.0
PJD3_k127_721997_6 Domain of unknown function (DUF309) - - - 0.0000000000000000000007497 99.0
PJD3_k127_722965_0 Belongs to the ALAD family K01698 - 4.2.1.24 9.143e-200 624.0
PJD3_k127_722965_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 397.0
PJD3_k127_731_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006526 519.0
PJD3_k127_731_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 451.0
PJD3_k127_731_2 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 332.0
PJD3_k127_731_3 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 289.0
PJD3_k127_731_4 DnaK suppressor protein K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000000001904 235.0
PJD3_k127_759172_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.584e-268 827.0
PJD3_k127_759172_1 COG0436 Aspartate tyrosine aromatic aminotransferase - - - 4.165e-231 717.0
PJD3_k127_759172_2 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 449.0
PJD3_k127_759172_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008094 279.0
PJD3_k127_765007_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1522.0
PJD3_k127_765007_1 Receptor K02014 - - 0.0 1115.0
PJD3_k127_765007_11 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003094 271.0
PJD3_k127_765007_2 COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - - - 0.0 1004.0
PJD3_k127_765007_3 Phospholipid glycerol acyltransferase - - - 1.032e-283 874.0
PJD3_k127_765007_4 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 1.261e-269 833.0
PJD3_k127_765007_5 ATP-binding region ATPase domain protein - - - 2.89e-251 783.0
PJD3_k127_765007_6 (EAL) domain protein - - - 1.212e-244 761.0
PJD3_k127_765007_7 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 6.239e-212 660.0
PJD3_k127_765007_8 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005933 507.0
PJD3_k127_765007_9 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009554 301.0
PJD3_k127_78783_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0 1510.0
PJD3_k127_78783_1 COG4775 Outer membrane protein protective antigen OMA87 K07278 - - 1.119e-310 957.0
PJD3_k127_78783_10 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000004148 241.0
PJD3_k127_78783_11 alpha-ribazole phosphatase activity K02226 - 3.1.3.73 0.00000000000000000000000000000000000000000000000000000000000000000002751 235.0
PJD3_k127_78783_12 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000003583 236.0
PJD3_k127_78783_13 Domain of Unknown Function (DUF350) K08989 - - 0.000000000000000000000000000000000000000000000000000000000000004548 219.0
PJD3_k127_78783_14 - - - - 0.0000000000000000000000000000000000000000000000000000000000001129 216.0
PJD3_k127_78783_15 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000001257 210.0
PJD3_k127_78783_16 - - - - 0.000000000000000000000000000000000000000006041 155.0
PJD3_k127_78783_17 Domain of unknown function (DUF1987) - - - 0.000000000000000000000000000000000003531 141.0
PJD3_k127_78783_18 Uncharacterized conserved protein (DUF2249) - - - 0.00000000002171 68.0
PJD3_k127_78783_2 MgtC family - - - 1.829e-221 691.0
PJD3_k127_78783_3 Protein of unknown function DUF262 - - - 1.088e-220 698.0
PJD3_k127_78783_4 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194 587.0
PJD3_k127_78783_5 cation diffusion facilitator family transporter K14696 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004741 497.0
PJD3_k127_78783_6 Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate K02233 - 2.7.8.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 366.0
PJD3_k127_78783_7 PFAM Stage II sporulation E family protein K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 337.0
PJD3_k127_78783_8 Methyl-accepting chemotaxis protein (MCP) signaling domain K02660 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001066 289.0
PJD3_k127_78783_9 Hemerythrin HHE cation binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001335 261.0
PJD3_k127_843482_0 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003195 402.0
PJD3_k127_843482_1 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 359.0
PJD3_k127_843482_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001793 267.0
PJD3_k127_844793_0 cation transport ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 0.0 1270.0
PJD3_k127_844793_1 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001701 518.0
PJD3_k127_844793_2 Cytochrome c553 K08738 - - 0.000000000000000000000000000000000000000000000004932 173.0
PJD3_k127_844793_3 Cytochrome oxidase maturation protein - - - 0.0000000000000000000000000000000000009314 139.0
PJD3_k127_876541_0 GAF domain K01768 - 4.6.1.1 0.0 2536.0
PJD3_k127_876541_1 Histidine kinase - - - 1.213e-272 845.0
PJD3_k127_876541_2 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 5.781e-262 815.0
PJD3_k127_876541_3 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 547.0
PJD3_k127_876541_4 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 285.0
PJD3_k127_876541_5 translation initiation factor activity K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002403 263.0
PJD3_k127_886136_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006664 482.0
PJD3_k127_886136_1 Diguanylate cyclase, GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000834 454.0
PJD3_k127_886136_2 Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs K06176 - 5.4.99.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000082 253.0
PJD3_k127_908557_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 6.796e-267 822.0
PJD3_k127_908557_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009113 346.0
PJD3_k127_908557_2 - - - - 0.0000000000000000000000000000000000000001042 151.0
PJD3_k127_916418_0 ATP-dependent CLP protease ATP-binding subunit K03694 - - 1.652e-291 911.0
PJD3_k127_916418_1 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 1.289e-244 758.0
PJD3_k127_916418_2 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008567 392.0
PJD3_k127_916418_3 Protein of unknown function (DUF3015) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003768 265.0
PJD3_k127_916418_4 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000000000002431 190.0
PJD3_k127_916418_5 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 GO:0003674,GO:0003824,GO:0004141,GO:0016874,GO:0016879,GO:0016882 6.3.3.3 0.00000003135 55.0
PJD3_k127_924826_0 STAS domain K03321 - - 0.0 1184.0
PJD3_k127_924826_1 Cysteine desulfurase K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 488.0
PJD3_k127_924826_2 diguanylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 424.0
PJD3_k127_924826_3 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 421.0
PJD3_k127_92758_0 GGDEF domain - - - 3.202e-271 839.0
PJD3_k127_92758_1 diguanylate cyclase - - - 7.297e-226 701.0
PJD3_k127_93989_0 dehydrogenase K08325 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 383.0
PJD3_k127_93989_1 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 321.0
PJD3_k127_93989_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001208 243.0
PJD3_k127_93989_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.000000000000000000000000000000000000000000000000000000000000000000009574 239.0
PJD3_k127_93989_4 Pathogenicity locus - - - 0.0000000000000000000000000000000000000000000000000007769 184.0
PJD3_k127_940560_0 COG0058 Glucan phosphorylase K00688 - 2.4.1.1 0.0 1067.0
PJD3_k127_940560_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.883e-212 660.0
PJD3_k127_940560_2 Alpha amylase, C-terminal all-beta domain K00700 - 2.4.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 280.0
PJD3_k127_949089_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 1.045e-204 638.0
PJD3_k127_949089_1 acid membrane antigen A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 587.0
PJD3_k127_949089_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.00000000000000000000000000000000000000000000000000000000000000004775 223.0
PJD3_k127_949652_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 2.393e-291 900.0
PJD3_k127_949652_1 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002786 428.0
PJD3_k127_949652_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 312.0
PJD3_k127_951604_0 PFAM Type IV pilus assembly PilZ - - - 1.589e-299 930.0
PJD3_k127_951604_1 lytic murein transglycosylase K08309 - - 5.462e-288 891.0
PJD3_k127_951604_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 4.414e-279 858.0
PJD3_k127_951604_3 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 5.457e-220 685.0
PJD3_k127_951604_4 Potassium uptake protein K03498 - - 3.413e-197 618.0
PJD3_k127_951604_5 uptake protein K03499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 401.0
PJD3_k127_951604_6 YGGT family K02221 - - 0.0000000000000000000000000000000000000000001901 160.0
PJD3_k127_951604_7 Nitrogenase cofactor biosynthesis protein NifB K02585 - - 0.00000000002003 63.0
PJD3_k127_965008_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 7.258e-207 644.0
PJD3_k127_965008_1 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 592.0
PJD3_k127_965008_2 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006637 479.0
PJD3_k127_965008_3 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 441.0
PJD3_k127_965008_4 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 357.0
PJD3_k127_965008_5 Ankyrin repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008306 286.0
PJD3_k127_965008_6 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000514 279.0
PJD3_k127_965008_7 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000000000000000000000000003541 207.0
PJD3_k127_965008_9 thiamine biosynthesis protein ThiS K03154 - - 0.000000000000000000000000000000694 122.0
PJD3_k127_998854_0 receptor K02014 - - 7.755e-233 733.0
PJD3_k127_998854_1 4Fe-4S binding domain - - - 7.949e-204 636.0
PJD3_k127_998854_2 Cytochrome C biogenesis protein transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005622 300.0
PJD3_k127_998854_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000004966 232.0
PJD3_k127_998854_4 - - - - 0.000000000000000000000000000001468 131.0