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Overview

ID MAG03365
Name SHD1_bin.2
Sample SMP0082
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order JABDJR01
Family JAWXBZ01
Genus
Species
Assembly information
Completeness (%) 77.27
Contamination (%) 3.13
GC content (%) 67.0
N50 (bp) 5,174
Genome size (bp) 2,639,160

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2200

Gene name Description KEGG GOs EC E-value Score Sequence
SHD1_k127_1007471_0 PglZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002305 561.0
SHD1_k127_1007471_1 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007453 413.0
SHD1_k127_1007471_2 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 GO:0001676,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003824,GO:0003989,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006417,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009317,GO:0009329,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0017148,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032787,GO:0032991,GO:0034248,GO:0034249,GO:0042759,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:0097159,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:2000112,GO:2000113 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 362.0
SHD1_k127_1007471_3 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000000003354 132.0
SHD1_k127_1007471_4 COG1214 Inactive homolog of metal-dependent proteases K01409,K14742 - 2.3.1.234 0.00000000000000000000001621 114.0
SHD1_k127_1007471_5 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.00000000000000000002055 106.0
SHD1_k127_1044102_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003066 583.0
SHD1_k127_1044102_1 Belongs to the peptidase M16 family K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 483.0
SHD1_k127_1044102_2 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000001836 235.0
SHD1_k127_1044102_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000001709 210.0
SHD1_k127_1044102_4 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000003404 167.0
SHD1_k127_1044102_5 CAAX protease self-immunity K07052 - - 0.000000000000000000000000009999 125.0
SHD1_k127_1044102_6 Phosphoesterase K07095 - - 0.00000000000000000000000001166 128.0
SHD1_k127_1047207_0 Uncharacterized protein conserved in bacteria (DUF2344) - - - 3.029e-202 656.0
SHD1_k127_1049727_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 583.0
SHD1_k127_1049727_1 glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 317.0
SHD1_k127_1049727_2 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000001909 172.0
SHD1_k127_1049727_3 - - - - 0.000000000000000000000000000000000000003857 153.0
SHD1_k127_1049727_4 Oxidoreductase molybdopterin binding domain - - - 0.000000000000000000000000000000008494 146.0
SHD1_k127_1049727_5 Cytochrome c K03889 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000001512 61.0
SHD1_k127_1049727_6 - K20326 - - 0.000001799 61.0
SHD1_k127_1049727_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0005153 53.0
SHD1_k127_105707_0 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002117 286.0
SHD1_k127_105707_1 PFAM Pilus assembly protein PilO K02664 - - 0.0000000000000000002777 97.0
SHD1_k127_105707_2 PFAM Fimbrial assembly family protein K02663 - - 0.000000000002335 76.0
SHD1_k127_105707_3 oligosaccharyl transferase activity - - - 0.0000000000562 70.0
SHD1_k127_1057744_0 ABC transporter - - - 1.056e-257 805.0
SHD1_k127_1057744_1 PFAM Fatty acid desaturase K04712 - 1.14.18.5,1.14.19.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 344.0
SHD1_k127_1057744_2 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 295.0
SHD1_k127_1057744_3 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007192 293.0
SHD1_k127_1057744_4 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.0000000000000000000002193 103.0
SHD1_k127_1058654_0 phosphinothricin N-acetyltransferase activity K03823 - 2.3.1.183 0.0000000000000000000000000000000000000000000000000000000001342 210.0
SHD1_k127_1058654_1 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000002933 192.0
SHD1_k127_1058654_2 Bacterial PH domain K08981 - - 0.000000000000000000000000000000000008802 143.0
SHD1_k127_1058654_3 Nucleotidyl transferase of unknown function (DUF2204) - - - 0.0000000000000001194 85.0
SHD1_k127_1072085_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 6.075e-205 665.0
SHD1_k127_1072085_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002796 533.0
SHD1_k127_1072085_2 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002677 518.0
SHD1_k127_1072085_3 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000000000000000000000000000000000000000000006108 187.0
SHD1_k127_1072085_4 Biotin-requiring enzyme - - - 0.00000000001541 77.0
SHD1_k127_1072085_5 Pfam:DUF490 K09800 - - 0.0000000002216 75.0
SHD1_k127_1077743_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 5.599e-320 998.0
SHD1_k127_1077743_1 glycosyl transferase family K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 6.265e-257 812.0
SHD1_k127_1077743_2 PFAM glycoside hydrolase 15-related - - - 0.0000000000000000000000000000000000000000000000002421 180.0
SHD1_k127_1077743_3 - - - - 0.000000000000000000000000000000000000000001017 172.0
SHD1_k127_1077743_4 Transcriptional - - - 0.000000000000000000000000000001577 126.0
SHD1_k127_1080221_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667,K01668 - 4.1.99.1,4.1.99.2 1.222e-242 758.0
SHD1_k127_1080221_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372,K02567 - - 2.253e-214 672.0
SHD1_k127_1080221_2 Peptidase dimerisation domain K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005969 461.0
SHD1_k127_1080221_3 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003676 320.0
SHD1_k127_1080221_4 Belongs to the metal hydrolase YfiT family - - - 0.00000000000000000000000000000000000000000000000000000000000000004847 227.0
SHD1_k127_1080221_5 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.0000000000000000000000000000000000000000000001151 183.0
SHD1_k127_1093051_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 344.0
SHD1_k127_1093051_1 Conserved TM helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 316.0
SHD1_k127_1093051_2 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000006119 233.0
SHD1_k127_1094383_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004999 283.0
SHD1_k127_1094383_1 serine-type peptidase activity K01278 - 3.4.14.5 0.000000000000000000000000000000000000000000000002351 175.0
SHD1_k127_1094383_2 Transcriptional regulator, Crp Fnr family K01420 - - 0.000000000000000000000000000001497 131.0
SHD1_k127_1098549_0 Cadherin repeats. - - - 0.0000000000000000000000000000000000000000000000000000000000002565 240.0
SHD1_k127_1098549_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000008039 209.0
SHD1_k127_1106839_0 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.00000000000000000000000000000006622 128.0
SHD1_k127_1109432_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005978 589.0
SHD1_k127_1109432_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002994 472.0
SHD1_k127_1109432_10 PFAM NADH-ubiquinone plastoquinone oxidoreductase, chain 6 K00339 - 1.6.5.3 0.000000000000000000000000239 111.0
SHD1_k127_1109432_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000016 113.0
SHD1_k127_1109432_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 402.0
SHD1_k127_1109432_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 363.0
SHD1_k127_1109432_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 347.0
SHD1_k127_1109432_5 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007553 308.0
SHD1_k127_1109432_6 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000002127 253.0
SHD1_k127_1109432_7 PFAM cytochrome c assembly protein - - - 0.0000000000000000000000000000000000000003206 160.0
SHD1_k127_1109432_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00330 - 1.6.5.3 0.000000000000000000000000000000002875 133.0
SHD1_k127_1109432_9 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000001198 117.0
SHD1_k127_1117988_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000878 255.0
SHD1_k127_1117988_1 membrane - - - 0.0000000000005245 81.0
SHD1_k127_1117988_2 - - - - 0.0000003634 59.0
SHD1_k127_1117988_3 PFAM Methyltransferase type 11 - - - 0.00007225 51.0
SHD1_k127_1127423_0 CHAT domain - - - 0.00000000000000000000000000000000000000000000000000005681 203.0
SHD1_k127_1127423_1 Belongs to the peptidase S8 family K08651,K14743 - 3.4.21.66 0.000000000000000000000000000000000000000000000000002468 200.0
SHD1_k127_1131171_0 Extradiol ring-cleavage dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004129 401.0
SHD1_k127_1131171_1 TGS domain K06944 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001196 275.0
SHD1_k127_1131171_2 xyloglucan:xyloglucosyl transferase activity K01216,K07004 - 3.2.1.73 0.00000000000000000000000000000000000000000000000000000000000000000000005455 251.0
SHD1_k127_1137842_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000002668 116.0
SHD1_k127_1137842_1 Two component regulator propeller - - - 0.00000000000001123 78.0
SHD1_k127_1140858_0 tRNA synthetase class II core domain (G, H, P, S and T) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 415.0
SHD1_k127_1140858_1 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 392.0
SHD1_k127_1140858_2 VanZ like family - - - 0.000001382 56.0
SHD1_k127_1141490_0 Glycosyl transferase, family 2 - - - 0.000000000000000000000000000000000000000000000000000000003759 213.0
SHD1_k127_1141490_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000005306 200.0
SHD1_k127_1141490_2 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000005506 142.0
SHD1_k127_1141490_3 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.00000000001114 69.0
SHD1_k127_1148954_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007521 304.0
SHD1_k127_1148954_1 phosphorelay sensor kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000001369 256.0
SHD1_k127_1148954_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K15580 - - 0.00000000000000000001426 102.0
SHD1_k127_1151309_1 anaphase-promoting complex binding - - - 0.0000788 56.0
SHD1_k127_1151309_2 Protein conserved in bacteria - - - 0.0009427 53.0
SHD1_k127_1153537_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 379.0
SHD1_k127_1153537_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 351.0
SHD1_k127_1153537_2 PFAM peptidase M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 299.0
SHD1_k127_1153537_3 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001659 266.0
SHD1_k127_1153537_4 Hexapeptide repeat of succinyl-transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000009776 241.0
SHD1_k127_1153537_5 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000006207 233.0
SHD1_k127_1153537_6 Protein of unknown function (DUF1326) - - - 0.0003731 52.0
SHD1_k127_1164626_0 Peptidase family M1 domain K01992 - - 1.044e-298 947.0
SHD1_k127_1164626_1 PFAM major facilitator superfamily MFS_1 K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000006084 246.0
SHD1_k127_1164626_2 Belongs to the TrpC family K01609,K13498 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000002088 212.0
SHD1_k127_1167836_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 9.163e-268 860.0
SHD1_k127_1167836_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 3.276e-199 640.0
SHD1_k127_1167836_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 443.0
SHD1_k127_1167836_3 Cupredoxin-like domain - - - 0.0000000000000003322 83.0
SHD1_k127_1170279_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 418.0
SHD1_k127_1170279_1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 335.0
SHD1_k127_1170279_2 regulatory protein, arsR K03892,K21903 - - 0.000000000000000000000009456 109.0
SHD1_k127_1170279_3 Acyltransferase family - - - 0.00004802 47.0
SHD1_k127_117400_0 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 333.0
SHD1_k127_117400_1 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000006973 177.0
SHD1_k127_1207909_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1461.0
SHD1_k127_1207909_1 Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003872 599.0
SHD1_k127_1207909_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 396.0
SHD1_k127_1207909_3 Acts as a magnesium transporter K06213 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 308.0
SHD1_k127_1207909_4 Bacterial protein of unknown function (DUF885) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001829 288.0
SHD1_k127_1207909_5 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.00000000000000000000000000000000000000003263 155.0
SHD1_k127_1214651_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 519.0
SHD1_k127_1214651_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 338.0
SHD1_k127_1222487_0 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003151 439.0
SHD1_k127_1222487_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006069 414.0
SHD1_k127_1222487_2 PFAM Nucleotidyl transferase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000000000000000001372 104.0
SHD1_k127_1226000_0 cytochrome c nitrite reductase K15876 - - 0.00000000000000000000000000000000000000000000000000001964 192.0
SHD1_k127_1226000_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000005756 109.0
SHD1_k127_1226000_2 protein secretion K08651 - 3.4.21.66 0.00000000000000003011 97.0
SHD1_k127_1226000_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000002747 58.0
SHD1_k127_1281850_1 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000465 439.0
SHD1_k127_1281850_2 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 304.0
SHD1_k127_1281850_3 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.000000006718 68.0
SHD1_k127_1285152_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 339.0
SHD1_k127_1285152_1 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.000000000000000000000000000000000000000001112 162.0
SHD1_k127_1285152_2 Ethylbenzene dehydrogenase - - - 0.0001347 54.0
SHD1_k127_1312285_0 Molydopterin dinucleotide binding domain K08352 - 1.8.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000793 470.0
SHD1_k127_1312285_1 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 301.0
SHD1_k127_1312285_2 Polysulphide reductase, NrfD - - - 0.000000000000000003075 87.0
SHD1_k127_1318161_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1264.0
SHD1_k127_1318161_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002129 297.0
SHD1_k127_1318161_2 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000008474 212.0
SHD1_k127_1318161_3 Participates in transcription elongation, termination and antitermination K02601 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030312,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000004087 211.0
SHD1_k127_1318161_4 Ribosomal protein L7/L12 dimerisation domain K02935 - - 0.0000000000000000000000000000000000000002843 153.0
SHD1_k127_1318161_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000003723 148.0
SHD1_k127_1318161_6 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000001743 79.0
SHD1_k127_1318161_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000005125 57.0
SHD1_k127_1320893_0 CHAT domain - - - 0.000000000000000000000000000000000000000000000000001011 204.0
SHD1_k127_1320893_1 Belongs to the peptidase S8 family K14743 - - 0.0000000000000000000000000000000000000009464 165.0
SHD1_k127_132207_0 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
SHD1_k127_132207_1 ATP-grasp domain K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000003672 233.0
SHD1_k127_132207_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00005627 51.0
SHD1_k127_1322591_0 Vacuole effluxer Atg22 like K06902 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 354.0
SHD1_k127_1334419_0 myo-inosose-2 dehydratase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 323.0
SHD1_k127_1334419_1 sporulation initiation inhibitor K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.000000000000000000000000000000000000000000000000003474 194.0
SHD1_k127_1334419_2 - - - - 0.0000000000000000000000000000000000000003552 153.0
SHD1_k127_1334419_3 chlorophyll binding - - - 0.000000000000000000000000000000001077 145.0
SHD1_k127_1334419_4 C terminal of Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000001069 140.0
SHD1_k127_133838_0 Protein of unknown function (DUF3570) - - - 0.00000000000000000000000000000000000000000000000000000000000000000008915 244.0
SHD1_k127_133838_1 ApbE family K03734 - 2.7.1.180 0.00000000000000000000000000000000000000000000000000000000000008172 221.0
SHD1_k127_133838_2 - - - - 0.000000000000000000000000000000000000000000002094 169.0
SHD1_k127_133838_3 Redoxin - - - 0.0000000000000000000000000000000005938 145.0
SHD1_k127_133838_4 Domain of unknown function (DUF4266) - - - 0.000000000000000004071 94.0
SHD1_k127_1342231_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 452.0
SHD1_k127_1342231_1 oligosaccharyl transferase activity - - - 0.000000000000000000001518 103.0
SHD1_k127_136931_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000009572 117.0
SHD1_k127_136931_1 B12 binding domain - - - 0.00000000000000000001177 107.0
SHD1_k127_136931_2 Elongator protein 3, MiaB family, Radical SAM K06139 - - 0.00005305 49.0
SHD1_k127_137348_0 Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 426.0
SHD1_k127_137348_1 Ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 332.0
SHD1_k127_137348_2 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000003291 239.0
SHD1_k127_137348_4 extracellular matrix structural constituent - - - 0.0000000000004866 80.0
SHD1_k127_1376469_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 363.0
SHD1_k127_1376469_1 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 324.0
SHD1_k127_1376469_10 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000001648 64.0
SHD1_k127_1376469_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001678 264.0
SHD1_k127_1376469_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000001328 216.0
SHD1_k127_1376469_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000001179 188.0
SHD1_k127_1376469_5 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000001919 179.0
SHD1_k127_1376469_6 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.000000000000000000000000000000000002576 140.0
SHD1_k127_1376469_7 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000003161 137.0
SHD1_k127_1376469_8 Glycosyl hydrolase-like 10 - - - 0.00000000000000000828 90.0
SHD1_k127_1376469_9 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000005159 70.0
SHD1_k127_1385983_0 Myo-inositol-1-phosphate synthase, GAPDH domain protein K01858 - 5.5.1.4 6.601e-211 664.0
SHD1_k127_1385983_1 Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin K03635,K21142 - 2.8.1.12 0.0000000000000000000000000000000000000000003839 168.0
SHD1_k127_1385983_2 Transcriptional regulator - - - 0.000000000000000000000000000000007535 140.0
SHD1_k127_1385983_3 Evidence 5 No homology to any previously reported sequences - - - 0.0002875 51.0
SHD1_k127_1385983_4 long-chain fatty acid transport protein - - - 0.0006119 52.0
SHD1_k127_1392288_0 lysine biosynthetic process via aminoadipic acid - - - 4.217e-268 852.0
SHD1_k127_1392288_1 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 346.0
SHD1_k127_1392288_2 carboxymethylenebutenolidase activity K01061,K07100 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004254 273.0
SHD1_k127_1392288_3 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009638 273.0
SHD1_k127_1392890_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000634 209.0
SHD1_k127_1392890_1 Highly conserved protein containing a thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000003816 200.0
SHD1_k127_1403804_0 Carbamoyltransferase C-terminus K00612 - - 2.283e-254 808.0
SHD1_k127_1403804_1 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000001418 183.0
SHD1_k127_1403804_2 - - - - 0.0000000000002579 80.0
SHD1_k127_1403804_3 - - - - 0.00000000108 63.0
SHD1_k127_1406425_0 ABC transporter, transmembrane K11085 - - 1.668e-261 819.0
SHD1_k127_1406425_1 Berberine and berberine like - - - 3.473e-198 635.0
SHD1_k127_1406425_2 Peptidase S9, prolyl oligopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 444.0
SHD1_k127_1406425_3 Haem-binding domain - - - 0.00000000000000000000000000000000002817 140.0
SHD1_k127_1409566_0 endonuclease activity K07451 - - 0.0000000000000000000000000000000000000000000000000000005688 209.0
SHD1_k127_1409566_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000001061 193.0
SHD1_k127_1409566_2 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000006807 164.0
SHD1_k127_1409566_3 Cupin domain - - - 0.000000000000000000001424 102.0
SHD1_k127_1409566_4 two component, sigma54 specific, transcriptional regulator, Fis family K13599 - - 0.00000000000006282 75.0
SHD1_k127_1411777_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 316.0
SHD1_k127_1411777_1 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000001621 269.0
SHD1_k127_1411777_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000007587 106.0
SHD1_k127_1411777_3 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000001904 81.0
SHD1_k127_1414234_0 Belongs to the ABC transporter superfamily K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003703 357.0
SHD1_k127_1414234_1 Binding-protein-dependent transport system inner membrane component K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 359.0
SHD1_k127_1414234_2 'ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 348.0
SHD1_k127_1414234_3 ABC-type oligopeptide transport system, periplasmic component K15580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002666 288.0
SHD1_k127_1416585_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1169.0
SHD1_k127_1416585_1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K00587 - 2.1.1.100 0.0000000000000000000000000002708 119.0
SHD1_k127_1423161_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 462.0
SHD1_k127_1423161_1 Molybdopterin oxidoreductase, Fe4S4 K00336,K05299 - 1.17.1.10,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004363 330.0
SHD1_k127_1423161_2 EamA-like transporter family - - - 0.000000000000000000000000000000000006812 148.0
SHD1_k127_1423161_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K02573 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564 1.6.5.3 0.0000000000000000000000000000000003678 136.0
SHD1_k127_1423161_4 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.0000001922 56.0
SHD1_k127_1423487_0 Transcriptional regulator with HTH domain and aminotransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 369.0
SHD1_k127_1423487_1 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively K06215 - 4.3.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 341.0
SHD1_k127_1423487_2 Fis Family K02584 - - 0.0000000000000000000000000000000000000000000000000002787 198.0
SHD1_k127_1423487_3 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000409 142.0
SHD1_k127_1432392_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.000000000000000000000000000000000000001986 156.0
SHD1_k127_1432392_1 PPIC-type PPIASE domain K03769,K07533 - 5.2.1.8 0.000000000000000000000000000000000001615 157.0
SHD1_k127_144061_0 spermidine synthase activity K00797 GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 350.0
SHD1_k127_144061_1 COG0457 FOG TPR repeat - - - 0.000000000000002038 91.0
SHD1_k127_1445182_0 Belongs to the ABC transporter superfamily K02031,K02032,K13892 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000563 397.0
SHD1_k127_1445182_1 HD domain K07814 - - 0.0000000002194 70.0
SHD1_k127_146857_0 PHP domain protein K02347 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611 449.0
SHD1_k127_146857_1 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 413.0
SHD1_k127_1481305_0 RNA methyltransferase TrmH family K02533,K15396 - 2.1.1.200 0.000000000000000000000004667 113.0
SHD1_k127_1481305_1 ABC-2 family transporter protein K01992 - - 0.00000000000000105 77.0
SHD1_k127_1481305_2 arabinogalactan endo-1,4-beta-galactosidase activity - - - 0.00000000049 71.0
SHD1_k127_1481305_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.0000001142 59.0
SHD1_k127_1481305_4 ompA family - - - 0.00006264 55.0
SHD1_k127_1492255_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 366.0
SHD1_k127_1492255_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001332 274.0
SHD1_k127_1492255_2 TIGRFAM Diguanylate cyclase - - - 0.000000000000004172 89.0
SHD1_k127_1492255_3 Bacterial Ig-like domain - - - 0.000001595 60.0
SHD1_k127_1492255_4 Binds directly to 16S ribosomal RNA K02968 - - 0.000008955 55.0
SHD1_k127_1493472_0 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000498 173.0
SHD1_k127_1493472_1 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.0000000000000000000000000000000000342 139.0
SHD1_k127_1493472_2 - - - - 0.00000000000000001283 92.0
SHD1_k127_1495148_0 PFAM Uncharacterised protein family UPF0182 K09118 - - 1.568e-198 652.0
SHD1_k127_1495148_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006622 609.0
SHD1_k127_1495148_2 Acyl-CoA dehydrogenase, N-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 432.0
SHD1_k127_1495148_3 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 359.0
SHD1_k127_1495148_4 - - - - 0.000000000000000000000000000000000000405 145.0
SHD1_k127_1495148_5 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) - - - 0.000000000000000000000000000000000004771 148.0
SHD1_k127_1495148_6 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000000000006562 154.0
SHD1_k127_1495148_7 - - - - 0.0000000000000000000000000000009952 134.0
SHD1_k127_1495148_8 COG2104 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.000000000011 67.0
SHD1_k127_1495148_9 BA14K-like protein - - - 0.00003322 54.0
SHD1_k127_1521211_0 Aspartate-ammonia ligase K01914 GO:0003674,GO:0003824,GO:0004071,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 529.0
SHD1_k127_1521211_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007016 351.0
SHD1_k127_1521211_2 - - - - 0.0000000000000000000000000000002343 139.0
SHD1_k127_1527854_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000001243 244.0
SHD1_k127_1527854_1 Thioredoxin - - - 0.00000000000000000004287 105.0
SHD1_k127_1527854_2 Thioredoxin - - - 0.000000000002119 78.0
SHD1_k127_1527854_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.000000002118 62.0
SHD1_k127_1537126_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 376.0
SHD1_k127_1537126_1 Chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003579 278.0
SHD1_k127_1537126_2 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005827 277.0
SHD1_k127_1537126_3 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001633 254.0
SHD1_k127_1537126_4 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.000000000000000000000000000000000000000000000000000000000001673 228.0
SHD1_k127_1537126_5 cyclic nucleotide-binding K10914 - - 0.00000000000000000000000000000000000000001117 176.0
SHD1_k127_1537126_6 Voltage gated chloride channel K03281 - - 0.00000000000000001234 92.0
SHD1_k127_1537126_7 drug transmembrane transporter activity - - - 0.00001049 50.0
SHD1_k127_1537871_0 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840,K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006088 487.0
SHD1_k127_1537871_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 394.0
SHD1_k127_1537871_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859,K07566 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24,2.7.7.87 0.0000000000000000000000000000005655 129.0
SHD1_k127_1549731_0 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000003882 200.0
SHD1_k127_1549731_1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000003871 128.0
SHD1_k127_1549731_2 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000003808 129.0
SHD1_k127_155524_0 PFAM polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002841 441.0
SHD1_k127_155524_1 Glycosyltransferase like family 2 K03606,K07011 - - 0.00000000000000000000000000000000000163 155.0
SHD1_k127_155524_2 Glycosyltransferase like family 2 K03606,K07011 - - 0.00000000000000000000000001452 110.0
SHD1_k127_155524_3 FemAB family - - - 0.00000000000001399 85.0
SHD1_k127_155524_4 diguanylate cyclase - - - 0.000000001289 72.0
SHD1_k127_155524_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000001396 68.0
SHD1_k127_155524_6 - - - - 0.000002446 59.0
SHD1_k127_155524_7 Polysaccharide biosynthesis protein - - - 0.00004485 56.0
SHD1_k127_1567852_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008316 416.0
SHD1_k127_1567852_1 Tetratricopeptide repeat - - - 0.0000000000001541 78.0
SHD1_k127_1576245_0 glutamate decarboxylase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008226 547.0
SHD1_k127_1576245_1 ATPase associated with various cellular K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009771 453.0
SHD1_k127_1576245_2 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 353.0
SHD1_k127_1576245_5 6-phosphogluconolactonase activity - - - 0.000000000000003202 77.0
SHD1_k127_1576245_6 Psort location CytoplasmicMembrane, score - - - 0.00000000000001204 87.0
SHD1_k127_1578954_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 595.0
SHD1_k127_1578954_1 protein conserved in bacteria K09800 - - 0.0000000000006617 82.0
SHD1_k127_1579792_0 Integrin alpha (beta-propellor repeats). - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002631 316.0
SHD1_k127_1579792_1 denitrification pathway - GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0019645,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003671 301.0
SHD1_k127_1579792_2 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000001595 250.0
SHD1_k127_1596570_0 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 5.438e-263 833.0
SHD1_k127_1596570_1 Predicted membrane protein (DUF2207) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 418.0
SHD1_k127_1596570_2 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007631 301.0
SHD1_k127_1596570_3 - - - - 0.0000000000000000000000000000002212 129.0
SHD1_k127_1601315_0 xanthine dehydrogenase activity K04109 - 1.3.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 322.0
SHD1_k127_1601315_1 endonuclease activity K07451 - - 0.00000000000000000000000000000000000000000000000000565 205.0
SHD1_k127_1601315_2 amine dehydrogenase activity K01218 - 3.2.1.78 0.00001403 57.0
SHD1_k127_1601315_3 Kelch motif - - - 0.00009614 54.0
SHD1_k127_1601315_5 COG1506 Dipeptidyl aminopeptidases acylaminoacyl-peptidases - - - 0.0009062 51.0
SHD1_k127_1603560_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009405,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0022610,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0035639,GO:0035821,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0051817,GO:0052047,GO:0052212,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 2.201e-232 730.0
SHD1_k127_1603560_1 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.0000000000000000000000000000000000000000000000000000000002849 208.0
SHD1_k127_1603560_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000006909 126.0
SHD1_k127_1603560_3 protein trimerization - - - 0.00000000000000000000000000000008463 129.0
SHD1_k127_1603560_4 aminotransferase class I and II - - - 0.00000000000000000000000000002009 126.0
SHD1_k127_1613146_0 Formiminotransferase-cyclodeaminase K00603,K01746,K13990 - 2.1.2.5,4.3.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 496.0
SHD1_k127_1613146_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 422.0
SHD1_k127_1613146_2 - - - - 0.000000000000000000000000000000003518 130.0
SHD1_k127_1613146_3 Protein of unknown function (DUF433) - - - 0.0000000000000000000000356 100.0
SHD1_k127_1613146_4 Tetratricopeptide repeats - - - 0.00002288 57.0
SHD1_k127_1626230_0 amidohydrolase - - - 0.0000000000000000000000000000000000000002127 166.0
SHD1_k127_1626230_1 Radical SAM K06871 - - 0.000000000000735 78.0
SHD1_k127_1646543_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 1.035e-249 782.0
SHD1_k127_1646543_1 PFAM phenylalanine histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 496.0
SHD1_k127_1646543_2 HELICc2 K03722 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 356.0
SHD1_k127_1649164_0 serine-type peptidase activity K01278,K06889 - 3.4.14.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 384.0
SHD1_k127_1649164_1 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000001161 149.0
SHD1_k127_1649164_2 1,4-alpha-glucan branching enzyme activity K00700 - 2.4.1.18 0.0000000000002715 77.0
SHD1_k127_1649164_3 SdrD B-like domain - - - 0.0000001222 63.0
SHD1_k127_1651918_0 Parallel beta-helix repeats - - - 0.0000000000000000000000000000000000000000000000000000000000003152 243.0
SHD1_k127_1651918_1 - - - - 0.0000000000006524 84.0
SHD1_k127_1651918_2 Concanavalin A-like lectin/glucanases superfamily - - - 0.0007672 54.0
SHD1_k127_1673008_0 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 394.0
SHD1_k127_1673008_1 cytochrome c - - - 0.00000000000000000000000001543 117.0
SHD1_k127_1673008_2 Polysulphide reductase, NrfD K00185 - - 0.000000000002132 74.0
SHD1_k127_1675522_0 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005339 508.0
SHD1_k127_1675522_1 Phospholipase D. Active site motifs. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004732 366.0
SHD1_k127_1680736_0 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 347.0
SHD1_k127_1680736_1 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000002072 267.0
SHD1_k127_1680736_2 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000000006661 165.0
SHD1_k127_1680736_3 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0000000000003052 73.0
SHD1_k127_1685202_0 Amino acid permease - - - 1.417e-245 777.0
SHD1_k127_1685202_1 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 401.0
SHD1_k127_1685202_2 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 362.0
SHD1_k127_1685202_3 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 291.0
SHD1_k127_1685202_4 - - - - 0.00006097 55.0
SHD1_k127_1708160_0 NlpC/P60 family K13695 - - 0.0000000006728 68.0
SHD1_k127_1708160_1 Phospholipase/Carboxylesterase K01061 - 3.1.1.45 0.000000007194 65.0
SHD1_k127_1708160_2 Domain of Unknown Function (DUF350) K08989 - - 0.0000008475 53.0
SHD1_k127_1724050_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002233 274.0
SHD1_k127_1724050_1 Fe-S oxidoreductase K07139 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000006699 59.0
SHD1_k127_1728453_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000566 489.0
SHD1_k127_1728453_1 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 392.0
SHD1_k127_1728453_3 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000004009 209.0
SHD1_k127_1728453_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.000002556 55.0
SHD1_k127_1728495_0 ABC-type dipeptide transport system periplasmic component K02035 - - 2.006e-204 660.0
SHD1_k127_1728495_1 ABC transporter permease K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 453.0
SHD1_k127_1728495_2 Glycosyl hydrolases family 16 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009967 249.0
SHD1_k127_1728495_3 ABC transporter permease K02034 - - 0.0000000000000000000000007486 114.0
SHD1_k127_1733556_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15635 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000006274 244.0
SHD1_k127_1733556_1 Oxidoreductase NAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000005056 174.0
SHD1_k127_1733556_2 COG0457 FOG TPR repeat - - - 0.00000000004162 69.0
SHD1_k127_174085_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 475.0
SHD1_k127_174085_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 348.0
SHD1_k127_174085_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 357.0
SHD1_k127_174085_3 - K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002823 248.0
SHD1_k127_174085_4 Protein of unknown function, DUF547 - - - 0.00000000000000000000000000000000002721 148.0
SHD1_k127_174085_5 ABC-type uncharacterized transport system - - - 0.0000000000000000000000000000000001213 150.0
SHD1_k127_174312_0 TIGRFAM Aspartate kinase K12524 - 1.1.1.3,2.7.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001849 444.0
SHD1_k127_174312_1 Methyl-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002131 271.0
SHD1_k127_174312_2 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000001043 267.0
SHD1_k127_174312_3 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 0.000000000000000000000000000000000000000000000000000000000000001199 224.0
SHD1_k127_174312_4 Threonine synthase K01733 - 4.2.3.1 0.0001659 51.0
SHD1_k127_174372_0 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001358 283.0
SHD1_k127_174372_1 Helix-turn-helix XRE-family like proteins K07726 - - 0.00000000000000000000001288 106.0
SHD1_k127_174372_2 Glycosyl transferase family 2 - - - 0.0000000000000000002549 94.0
SHD1_k127_174372_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.000000000001239 79.0
SHD1_k127_174372_4 von Willebrand factor, type A - - - 0.00000000002695 75.0
SHD1_k127_174372_5 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000001443 68.0
SHD1_k127_1753227_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1535.0
SHD1_k127_1753227_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 344.0
SHD1_k127_1753227_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K17686 - 3.6.3.54 0.000000000000000335 82.0
SHD1_k127_1753227_3 Protein of unknown function (DUF3347) - - - 0.000000000002778 76.0
SHD1_k127_1753227_4 Outer membrane efflux protein - - - 0.00002792 49.0
SHD1_k127_1760927_0 pfkB family carbohydrate kinase K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000009157 265.0
SHD1_k127_1760927_1 isomerase activity K06998 - 5.3.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000003318 256.0
SHD1_k127_1760927_2 enzyme related to lactoylglutathione lyase K06996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000456 248.0
SHD1_k127_1760927_3 Protein of unknown function (DUF3891) - - - 0.000000000000000000000000000000000000000000000000000000000000000005157 234.0
SHD1_k127_1760927_4 PFAM Rhomboid family protein K19225 - 3.4.21.105 0.0000000000000000000000000000000000005251 153.0
SHD1_k127_1760927_5 peptidyl-tyrosine sulfation - - - 0.00000000000000000002043 105.0
SHD1_k127_1760927_6 Carbon-nitrogen hydrolase K01501,K11206 - 3.5.5.1 0.00008217 54.0
SHD1_k127_1766595_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 499.0
SHD1_k127_1766595_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001944 485.0
SHD1_k127_1787232_0 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 371.0
SHD1_k127_1787232_1 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 332.0
SHD1_k127_1791659_0 Belongs to the ClpA ClpB family K11907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 490.0
SHD1_k127_1791659_1 Phage late control gene D protein (GPD) K11904 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001318 471.0
SHD1_k127_1791659_2 PucR C-terminal helix-turn-helix domain - - - 0.0006156 49.0
SHD1_k127_1793060_0 coagulation factor 5 8 type - - - 4.918e-251 818.0
SHD1_k127_1793060_1 ABC-type sugar transport systems, permease components K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004463 376.0
SHD1_k127_1793060_2 ABC-type sugar transport system, permease component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 318.0
SHD1_k127_1793060_3 ABC transporter substrate-binding protein K02027 - - 0.0000000000008059 70.0
SHD1_k127_1805672_0 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.000000000000000000000000000000000000000000000000000000000000000322 248.0
SHD1_k127_1805672_1 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000000003528 195.0
SHD1_k127_1805672_2 Tetratricopeptide repeat - - - 0.0000000000000005241 91.0
SHD1_k127_1805672_3 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.0000000000357 66.0
SHD1_k127_1813244_0 (ABC) transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 414.0
SHD1_k127_1813244_1 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009977 364.0
SHD1_k127_1813244_2 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000001151 246.0
SHD1_k127_1813244_3 photosystem I assembly BtpA K06971 - - 0.00000000000000000000000000000000000000000000000000000000000000000001671 252.0
SHD1_k127_1813244_4 Peptidase family M1 domain K01992 - - 0.00000000000000000000000000000000001417 140.0
SHD1_k127_1836845_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 471.0
SHD1_k127_1836845_1 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 425.0
SHD1_k127_1836845_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002673 317.0
SHD1_k127_1836845_3 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000002675 194.0
SHD1_k127_1836845_4 hyperosmotic response - - - 0.00000000000000000000000000009923 124.0
SHD1_k127_1866162_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030955,GO:0031004,GO:0031224,GO:0031226,GO:0031420,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 2.068e-272 849.0
SHD1_k127_1866162_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002835 624.0
SHD1_k127_1866162_2 Belongs to the LDH MDH superfamily K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005098 375.0
SHD1_k127_1866162_3 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000001408 146.0
SHD1_k127_1866162_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000006594 126.0
SHD1_k127_1866162_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000001483 85.0
SHD1_k127_1879145_0 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000001223 222.0
SHD1_k127_1879145_1 Organic solvent ABC transporter ATP-binding protein K02065 - - 0.00000000000000000000000000000000000000000000000000000001055 216.0
SHD1_k127_1879145_2 PFAM Mammalian cell entry related domain protein K02067 - - 0.00000000000000000000000000000000000007733 160.0
SHD1_k127_1902700_0 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 385.0
SHD1_k127_1902700_1 Transmembrane secretion effector K08225 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005097 383.0
SHD1_k127_1902700_2 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.00000000000000000000000000000000000000000000000000000000000000000003583 236.0
SHD1_k127_1902700_3 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000001125 213.0
SHD1_k127_1931385_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 311.0
SHD1_k127_1931385_1 lyase activity - - - 0.000000000000000000000000000000000000000000000003845 192.0
SHD1_k127_1931385_2 long-chain fatty acid transporting porin activity K06076 - - 0.000000003988 69.0
SHD1_k127_1931385_3 Belongs to the peptidase S8 family - - - 0.0002776 49.0
SHD1_k127_1952423_0 peptidyl-tyrosine sulfation - - - 0.0000004169 63.0
SHD1_k127_1961998_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 6.332e-285 911.0
SHD1_k127_1961998_1 THUMP K07444,K12297 - 2.1.1.173,2.1.1.264 0.0000000000000000000000000000000000000000000000000000000000000000002231 244.0
SHD1_k127_1961998_2 BON domain - - - 0.00000000000000000005773 100.0
SHD1_k127_1967312_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 389.0
SHD1_k127_1967312_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000009926 156.0
SHD1_k127_1967312_2 TIGRFAM NADH-quinone oxidoreductase, E subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000001308 155.0
SHD1_k127_1967312_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.3 0.000000000000000000007138 95.0
SHD1_k127_1967312_4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21562 - - 0.0000000000003178 79.0
SHD1_k127_1971351_0 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 377.0
SHD1_k127_1971351_1 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000121 109.0
SHD1_k127_1971351_2 cellulase activity K06882 - - 0.000000000000000000001733 104.0
SHD1_k127_1971351_3 - - - - 0.0000008214 53.0
SHD1_k127_1971717_0 General secretory system II protein E domain protein K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009127 494.0
SHD1_k127_1971717_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002032 475.0
SHD1_k127_1971717_2 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 449.0
SHD1_k127_1971717_3 Type II secretion system (T2SS), protein F K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 443.0
SHD1_k127_1971717_4 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000002844 259.0
SHD1_k127_1987669_0 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 624.0
SHD1_k127_1987669_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K15372 - 2.6.1.19,2.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009737 500.0
SHD1_k127_1987669_2 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 472.0
SHD1_k127_1987669_3 Aldehyde dehydrogenase family K22187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 501.0
SHD1_k127_1987669_4 acyl-CoA transferase carnitine dehydratase K18702 - 2.8.3.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 430.0
SHD1_k127_1987669_5 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000008649 187.0
SHD1_k127_1987669_6 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000002485 173.0
SHD1_k127_1987669_7 - - - - 0.0000000000000002341 91.0
SHD1_k127_198779_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000001085 158.0
SHD1_k127_198779_1 long-chain fatty acid transport protein K06076 - - 0.000000000000000000000000000002069 136.0
SHD1_k127_1990664_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 3.688e-258 814.0
SHD1_k127_1990664_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000001383 255.0
SHD1_k127_1990664_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000002718 248.0
SHD1_k127_1990664_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000000000002016 236.0
SHD1_k127_1990664_4 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000001436 207.0
SHD1_k127_1990664_5 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0000000000000000000000000000000000000006837 160.0
SHD1_k127_1990664_6 CYTH - - - 0.00000000000000000003077 101.0
SHD1_k127_1990664_7 Transposase - - - 0.00001834 56.0
SHD1_k127_1990664_8 Winged helix-turn-helix domain (DUF2582) - - - 0.00008768 54.0
SHD1_k127_1993434_0 - - - - 0.00000000000000000000000000000000000000214 163.0
SHD1_k127_1993434_1 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000001292 116.0
SHD1_k127_1993434_2 PFAM response regulator receiver - - - 0.00006179 51.0
SHD1_k127_2009208_0 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000178 216.0
SHD1_k127_2009208_1 His Kinase A (phosphoacceptor) domain K07653 GO:0000160,GO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0040007,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 0.000000000000000000000000000000000000000000002099 185.0
SHD1_k127_2009208_2 Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000004328 91.0
SHD1_k127_2015027_0 Histidine kinase K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002844 534.0
SHD1_k127_2015027_1 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000649 230.0
SHD1_k127_2016260_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388,K12527 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,1.97.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006619 585.0
SHD1_k127_2016260_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009689 252.0
SHD1_k127_2016260_2 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000000000000000001749 171.0
SHD1_k127_2016260_3 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.0009967 46.0
SHD1_k127_20190_0 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 368.0
SHD1_k127_20190_1 Zinc-binding dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 353.0
SHD1_k127_20190_2 PFAM Enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000611 217.0
SHD1_k127_20190_3 Belongs to the aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000004994 159.0
SHD1_k127_20190_4 SCO1/SenC K07152,K08976 - - 0.0000000000000000000000000000007551 123.0
SHD1_k127_2020008_0 Aldo/keto reductase family K05882 - 1.1.1.91 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006409 432.0
SHD1_k127_2020008_1 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 371.0
SHD1_k127_2020008_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000001749 269.0
SHD1_k127_2020008_3 peptide catabolic process - - - 0.00000000000000000000000000000000000000000000000000004588 199.0
SHD1_k127_2020008_4 - - - - 0.00000000000000000000000000000000000000000000000004676 193.0
SHD1_k127_2020008_5 Rhomboid family - - - 0.0000000003744 61.0
SHD1_k127_2020008_6 - - - - 0.0000006168 54.0
SHD1_k127_2020008_7 STAS domain K04749 - - 0.00004449 52.0
SHD1_k127_2031461_0 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000009411 240.0
SHD1_k127_2031461_1 lipoprotein localization to outer membrane K02004 - - 0.0000000000000000001777 100.0
SHD1_k127_2031461_2 - - - - 0.00000001459 61.0
SHD1_k127_2031490_0 PFAM Iron-containing alcohol dehydrogenase K00005 - 1.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003812 524.0
SHD1_k127_2031490_1 Heparinase II/III N-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008381 261.0
SHD1_k127_2031490_2 Asparagine synthase K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000003887 169.0
SHD1_k127_2031490_3 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.000000000000000002685 87.0
SHD1_k127_2032806_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002538 272.0
SHD1_k127_2032806_1 ABC transporter, ATP-binding protein K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006273 256.0
SHD1_k127_2032806_2 - - - - 0.0000000000000000000000000000000000000000000009969 183.0
SHD1_k127_2032806_3 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000007195 166.0
SHD1_k127_2032806_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000008239 107.0
SHD1_k127_2032806_6 - - - - 0.00000001089 68.0
SHD1_k127_2032806_7 type IV pilus modification protein PilV K02458,K02671 - - 0.0000002068 60.0
SHD1_k127_2032806_8 Prokaryotic N-terminal methylation motif K08084 - - 0.00005899 51.0
SHD1_k127_2032806_9 - - - - 0.00009419 55.0
SHD1_k127_2039229_0 Peptidase, M16 K07263 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 626.0
SHD1_k127_2042299_0 benzoyl-CoA reductase K04113 - 1.3.7.8 3.477e-195 617.0
SHD1_k127_2042299_1 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007366 469.0
SHD1_k127_2042299_2 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.000000000000000007623 97.0
SHD1_k127_2045307_0 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 475.0
SHD1_k127_2045307_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001228 383.0
SHD1_k127_2045307_2 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000001612 246.0
SHD1_k127_2045307_3 NUDIX domain - - - 0.000000000000000000000000000000000000002141 154.0
SHD1_k127_2048817_0 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000005686 205.0
SHD1_k127_2048817_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.000000000000000000000000000000000000000000000000000007614 195.0
SHD1_k127_2048817_2 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) - - - 0.000000000000000004176 92.0
SHD1_k127_2048817_3 Ami_3 K01448 - 3.5.1.28 0.0000000000002329 83.0
SHD1_k127_2051048_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 412.0
SHD1_k127_2051048_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004454 354.0
SHD1_k127_2051048_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001032 281.0
SHD1_k127_2051048_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000002462 156.0
SHD1_k127_2051048_4 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.000000000000000000000000000000000007866 138.0
SHD1_k127_2051048_5 Domain of unknown function (DUF4112) - - - 0.00000000000000000000000000000113 138.0
SHD1_k127_2051048_6 Preprotein translocase subunit K03210 - - 0.0000000000000000009851 94.0
SHD1_k127_2051048_7 Protein of unknown function (DUF2905) - - - 0.00000000000000003157 85.0
SHD1_k127_2069655_0 Transglycosylase - - - 0.0 1030.0
SHD1_k127_2069655_1 Glutamine synthetase, catalytic region K01915 - 6.3.1.2 1.191e-243 773.0
SHD1_k127_2069655_2 Amino acid permease K03294 - - 0.0000000000000000000000000000000000000000000000000000148 207.0
SHD1_k127_2069655_3 COG1520 FOG WD40-like repeat - - - 0.0000000000000000001689 97.0
SHD1_k127_2069655_4 purine nucleotide biosynthetic process K02103,K02529 - - 0.0000000000005744 72.0
SHD1_k127_2082390_0 PolyA polymerase K00974 - 2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003083 402.0
SHD1_k127_2082390_1 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000001343 243.0
SHD1_k127_2082390_2 Histidine kinase K14986 - 2.7.13.3 0.000000000000000000000000000000000000000000000002679 184.0
SHD1_k127_2091286_0 CHASE3 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 623.0
SHD1_k127_2091286_1 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 424.0
SHD1_k127_2091286_2 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 380.0
SHD1_k127_2091286_3 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000001051 200.0
SHD1_k127_2092289_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003858 391.0
SHD1_k127_2092289_1 Belongs to the glycosyl hydrolase 13 family K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 330.0
SHD1_k127_2092289_2 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000006612 187.0
SHD1_k127_2092289_3 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000001114 142.0
SHD1_k127_211916_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.0000000000000000000000000000000000000000000000000000000000000000003881 259.0
SHD1_k127_211916_1 Transcriptional regulator sugar kinase K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000002599 216.0
SHD1_k127_2128592_0 PFAM Prolyl oligopeptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002254 557.0
SHD1_k127_2128592_1 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005102 464.0
SHD1_k127_2128592_2 PFAM cytochrome bd ubiquinol oxidase subunit II K00426 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009543 383.0
SHD1_k127_2128592_3 amine dehydrogenase activity - - - 0.00000000000000000000000000006303 132.0
SHD1_k127_2128592_4 Belongs to the peptidase S8 family K01179 - 3.2.1.4 0.0000000008838 71.0
SHD1_k127_2130118_0 Lytic transglycosylase catalytic K08307 - - 0.0000000000000000002269 95.0
SHD1_k127_2138739_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 5.681e-264 827.0
SHD1_k127_2138739_1 endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000000846 150.0
SHD1_k127_2138739_2 4Fe-4S dicluster domain - - - 0.0000000000000000000000003725 107.0
SHD1_k127_2138739_3 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain K01840 - 5.4.2.8 0.000000000000005006 78.0
SHD1_k127_2144490_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 1.587e-210 664.0
SHD1_k127_2144490_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 400.0
SHD1_k127_2144490_2 Binds the 23S rRNA K02909 - - 0.0000000000000000000000001461 120.0
SHD1_k127_2144490_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000009605 77.0
SHD1_k127_2144490_4 Thymidylate synthase complementing protein - - - 0.0000000000002228 70.0
SHD1_k127_2145976_0 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 371.0
SHD1_k127_2145976_1 NADH ubiquinone oxidoreductase, 20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 317.0
SHD1_k127_2145976_2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000561 284.0
SHD1_k127_2145976_3 DsrC like protein K11179 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000006321 159.0
SHD1_k127_2145976_4 nitrate reductase activity - - - 0.000002045 58.0
SHD1_k127_2145976_5 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0006369 52.0
SHD1_k127_2151061_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002613 579.0
SHD1_k127_2151061_1 PFAM ribonuclease II K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 549.0
SHD1_k127_2151061_10 cellulose binding - - - 0.00000001612 67.0
SHD1_k127_2151061_12 Collagen, type XVI, alpha 1 - GO:0000003,GO:0001101,GO:0001952,GO:0001954,GO:0003674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005581,GO:0005593,GO:0005597,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007229,GO:0007565,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0010810,GO:0010811,GO:0012505,GO:0016043,GO:0022414,GO:0022607,GO:0022610,GO:0023052,GO:0030155,GO:0030198,GO:0031974,GO:0032501,GO:0032991,GO:0033622,GO:0033627,GO:0042221,GO:0043062,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0044877,GO:0045785,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050839,GO:0050896,GO:0051128,GO:0051130,GO:0051704,GO:0051716,GO:0051893,GO:0051894,GO:0065003,GO:0065007,GO:0070013,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071417,GO:0071495,GO:0071840,GO:0090109,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901888,GO:1901890,GO:1903391,GO:1903393 - 0.0009906 45.0
SHD1_k127_2151061_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 525.0
SHD1_k127_2151061_3 DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 527.0
SHD1_k127_2151061_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004112 392.0
SHD1_k127_2151061_5 4Fe-4S binding domain K08358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 331.0
SHD1_k127_2151061_6 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K04013,K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004134 265.0
SHD1_k127_2151061_7 PFAM PKD domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001278 250.0
SHD1_k127_2151061_8 KDPG and KHG aldolase - - - 0.00000000000000000000000000000000000006567 154.0
SHD1_k127_2170226_0 protein conserved in bacteria K11896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006688 540.0
SHD1_k127_2170226_1 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.0000000000000000000000000000000000000000000001552 173.0
SHD1_k127_2170226_2 Type VI secretion, TssG K11895 - - 0.000000000000000000000000000000000000000000001678 188.0
SHD1_k127_2170226_3 TIGRFAM Type VI secretion system, lysozyme-related K11905 - - 0.00000000000000000000007819 102.0
SHD1_k127_2176929_0 Protein of unknown function (DUF2723) - - - 0.000000000000000000000000000003683 135.0
SHD1_k127_2183639_0 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005713 451.0
SHD1_k127_2183639_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 304.0
SHD1_k127_2183639_2 lipid kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003629 274.0
SHD1_k127_2183639_3 PAS fold - - - 0.000000000000000000000000000000000728 142.0
SHD1_k127_2183639_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000002026 125.0
SHD1_k127_2183639_5 phosphatidate phosphatase activity K01096,K19302 - 3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.0000000000000000000000000002325 125.0
SHD1_k127_2183639_6 Heparinase II/III N-terminus - - - 0.000000000000000000001208 110.0
SHD1_k127_2183639_7 Heparinase II/III-like protein - - - 0.000000004702 67.0
SHD1_k127_2201316_0 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000000002505 121.0
SHD1_k127_2201316_1 Parallel beta-helix repeats - - - 0.0000002649 64.0
SHD1_k127_2201316_2 Mo-co oxidoreductase dimerisation domain - - - 0.00000417 61.0
SHD1_k127_2206738_0 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 430.0
SHD1_k127_2206738_1 PFAM dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.000000000000000000000000000000000000000000000000001889 189.0
SHD1_k127_2206738_2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000001045 114.0
SHD1_k127_2207035_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.21.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 531.0
SHD1_k127_2207035_1 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 366.0
SHD1_k127_2210054_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006432 347.0
SHD1_k127_2210054_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 314.0
SHD1_k127_2210054_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009059 261.0
SHD1_k127_2210054_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000203 221.0
SHD1_k127_2210054_4 - - - - 0.000000000000000000000000000000000000000000000000000000003259 208.0
SHD1_k127_2210054_5 PFAM Enoyl-CoA hydratase isomerase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000003982 161.0
SHD1_k127_2213726_0 PFAM type II secretion system protein E K02669 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 455.0
SHD1_k127_2213726_1 twitching motility protein K02670 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 385.0
SHD1_k127_2213726_3 cytokinin biosynthetic process K06966 - 3.2.2.10 0.00008874 46.0
SHD1_k127_2222536_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000997 273.0
SHD1_k127_2222536_1 TIGRFAM Flagellar hook-associated protein, FlgK K02396 - - 0.0000000000000000000000000000000000000000000000000000000001105 222.0
SHD1_k127_2222536_2 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.0000000000000453 81.0
SHD1_k127_2222536_3 Rod binding protein K02395 - - 0.000000004842 66.0
SHD1_k127_2223549_0 PFAM ATP dependent DNA ligase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005822 435.0
SHD1_k127_2223549_1 COG1073 Hydrolases of the alpha beta superfamily K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 382.0
SHD1_k127_2223549_2 PFAM Cation efflux - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 325.0
SHD1_k127_2223549_3 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 GO:0003674,GO:0003824,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046429,GO:0046490,GO:0052592,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901576 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000007891 134.0
SHD1_k127_2223549_4 - - - - 0.000000000000000000000000335 115.0
SHD1_k127_2223549_5 Thioredoxin - - - 0.00000000000000000000003115 109.0
SHD1_k127_2223549_6 BON domain - - - 0.0000000000000000009794 96.0
SHD1_k127_2224276_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004317 244.0
SHD1_k127_2224276_1 biopolymer transport protein K03559 - - 0.000000000000000000000000003625 116.0
SHD1_k127_2224276_2 biopolymer transport protein - - - 0.00000000000000000000000001552 114.0
SHD1_k127_2224276_3 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000001095 87.0
SHD1_k127_2224276_4 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000003481 71.0
SHD1_k127_2224276_5 Tetratricopeptide TPR_2 repeat protein - - - 0.00000002524 66.0
SHD1_k127_2233461_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 569.0
SHD1_k127_2233461_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000005644 205.0
SHD1_k127_2233461_2 - - - - 0.0000000000000000000000000000008091 136.0
SHD1_k127_2233461_3 - - - - 0.000000000000000000000000003081 114.0
SHD1_k127_223763_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 439.0
SHD1_k127_223763_1 domain, Protein K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000003699 241.0
SHD1_k127_223763_2 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000001341 196.0
SHD1_k127_223763_3 - - - - 0.00000000000000000000000000000000000000000000001198 185.0
SHD1_k127_223763_4 nucleotide catabolic process K05996 - 3.4.17.18 0.00000000001244 78.0
SHD1_k127_2253170_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 414.0
SHD1_k127_2253170_1 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 331.0
SHD1_k127_2253170_2 Transporter associated domain - - - 0.0000000000000000000000000000000000000000006978 179.0
SHD1_k127_2253170_3 PFAM CBS domain - - - 0.000000000000000000000000000000553 136.0
SHD1_k127_2253170_4 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000009293 102.0
SHD1_k127_2279296_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 2.442e-284 892.0
SHD1_k127_2279296_1 Cold shock protein K03704 - - 0.0000000000000000000000002017 106.0
SHD1_k127_2279296_2 COG1520 FOG WD40-like repeat - - - 0.0000000000000000000006986 110.0
SHD1_k127_2283999_0 Peptidase family M50 - - - 0.00000000000000000000000000000000000000000000000001387 206.0
SHD1_k127_2283999_1 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000003716 140.0
SHD1_k127_2287641_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007762 324.0
SHD1_k127_2287641_1 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002454 259.0
SHD1_k127_2287641_2 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000008067 221.0
SHD1_k127_2287641_3 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.0000000000000000000000000000008439 138.0
SHD1_k127_2287641_4 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.0000000000000000000000000009188 115.0
SHD1_k127_2287641_5 (AIR) carboxylase K06898 - - 0.00000000000000000003254 96.0
SHD1_k127_2287641_6 protein conserved in bacteria - GO:0008150,GO:0031279,GO:0031281,GO:0043085,GO:0044093,GO:0045761,GO:0045762,GO:0050790,GO:0051339,GO:0051349,GO:0065007,GO:0065009 - 0.0000000005264 70.0
SHD1_k127_2291056_0 threonyl-tRNA aminoacylation K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 7.148e-244 770.0
SHD1_k127_2291056_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 578.0
SHD1_k127_2291056_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 427.0
SHD1_k127_2291056_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 372.0
SHD1_k127_2291056_4 TIGRFAM metallophosphoesterase, MG_246 BB_0505 family K09769 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001214 287.0
SHD1_k127_2291056_5 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767 - 0.000000000000000000000000000000000000000000000000000001559 201.0
SHD1_k127_2291056_6 B3/4 domain K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000005535 171.0
SHD1_k127_2291056_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000465 139.0
SHD1_k127_2291056_8 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000003319 74.0
SHD1_k127_2291056_9 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000001387 57.0
SHD1_k127_2293444_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K08602 - - 5.197e-202 647.0
SHD1_k127_2293444_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007013 386.0
SHD1_k127_2308618_0 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002163 258.0
SHD1_k127_2308618_1 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.000000000000000000000000007894 110.0
SHD1_k127_2308618_2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.000000000000000004591 97.0
SHD1_k127_2308618_3 serine-type endopeptidase activity - - - 0.0000000000000004936 87.0
SHD1_k127_2309723_0 Poly A polymerase head domain K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006319 374.0
SHD1_k127_2309723_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 GO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001626 279.0
SHD1_k127_2309723_2 guanyl-nucleotide exchange factor activity K01179,K03929,K09612,K12287,K19701,K19702 GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005623,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0036211,GO:0042597,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.2.1.4,3.4.11.10,3.4.11.24,3.4.11.6 0.00000000000000000000000000000000000000000000005118 188.0
SHD1_k127_2309723_3 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000000000000000003867 151.0
SHD1_k127_2309723_4 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.0000000000000000000007493 109.0
SHD1_k127_2309723_5 extracellular matrix structural constituent - - - 0.00000497 59.0
SHD1_k127_2319189_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000351 207.0
SHD1_k127_2319189_1 biopolymer transport protein - - - 0.0000000000000000000000001756 110.0
SHD1_k127_2319189_2 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000002427 104.0
SHD1_k127_2319189_3 Tetratricopeptide repeat K12600 GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0043170,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000191 77.0
SHD1_k127_2319189_4 energy transducer activity K03832 - - 0.0000000001535 72.0
SHD1_k127_2322425_0 synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001562 285.0
SHD1_k127_2322425_1 regulation of methylation-dependent chromatin silencing - - - 0.0000000000000000000000000000000000000000000000000000000000000000001389 241.0
SHD1_k127_2322425_2 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000725 211.0
SHD1_k127_2322425_3 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000001818 124.0
SHD1_k127_2322425_4 Prolyl oligopeptidase family - - - 0.000000000000000000002458 104.0
SHD1_k127_232471_0 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000003094 137.0
SHD1_k127_232471_1 Glycosyl transferase, family 2 - - - 0.00000000000005521 82.0
SHD1_k127_232487_0 Glycolate oxidase subunit K00104 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 526.0
SHD1_k127_232487_1 Cysteine-rich domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000544 371.0
SHD1_k127_232487_2 Domain of unknown function (DUF4070) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 301.0
SHD1_k127_232487_3 epimerase K07071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003702 264.0
SHD1_k127_232487_4 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000006281 196.0
SHD1_k127_2331261_0 Phosphate transporter family K03306 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006784 412.0
SHD1_k127_2331261_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 375.0
SHD1_k127_2331261_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001682 329.0
SHD1_k127_2331261_3 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 319.0
SHD1_k127_2331261_4 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 319.0
SHD1_k127_2331261_5 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002828 280.0
SHD1_k127_2331261_6 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000001166 248.0
SHD1_k127_2331261_7 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000000000002717 200.0
SHD1_k127_2358545_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009002 408.0
SHD1_k127_2358545_1 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 327.0
SHD1_k127_2358545_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000003464 148.0
SHD1_k127_2358545_3 helix_turn_helix, mercury resistance K19591,K22491 - - 0.00000000000000000006107 98.0
SHD1_k127_2358545_4 Protein of unknown function (DUF512) - - - 0.0000001565 58.0
SHD1_k127_2360309_0 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000002835 271.0
SHD1_k127_2360309_1 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000002069 204.0
SHD1_k127_2360309_2 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000001485 86.0
SHD1_k127_2368484_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 8.417e-200 631.0
SHD1_k127_2368484_1 KaiB K08481 - - 0.000000000000000000000000000000000000002932 148.0
SHD1_k127_2368484_2 KaiB K08481 - - 0.00000000000000000000000935 107.0
SHD1_k127_2387558_0 serine-type peptidase activity K01303 - 3.4.19.1 8.043e-210 675.0
SHD1_k127_2387558_1 K+ potassium transporter K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 288.0
SHD1_k127_2395494_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0040007,GO:0044424,GO:0044464,GO:0055114 1.1.1.85 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 417.0
SHD1_k127_2395494_1 PFAM Glycosyl transferase, group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000003533 159.0
SHD1_k127_2397707_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 6.848e-229 730.0
SHD1_k127_2397707_1 Flagella basal body rod protein K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006812 292.0
SHD1_k127_2397707_2 Flagella basal body rod protein K02392 - - 0.00000000000000000000000000000000000000000007801 169.0
SHD1_k127_2397707_3 Sigma-70, region 4 K02405 - - 0.000000000000000000000000000000000000000009052 178.0
SHD1_k127_2397707_4 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.00000289 57.0
SHD1_k127_2400238_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007909 316.0
SHD1_k127_2400238_1 Glucokinase K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002648 291.0
SHD1_k127_2400238_2 phosphoserine phosphatase activity K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000008703 273.0
SHD1_k127_2400238_3 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.000000000000278 82.0
SHD1_k127_240243_0 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 9.371e-205 651.0
SHD1_k127_240243_1 PFAM ABC transporter related K02049,K15555,K15578 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 453.0
SHD1_k127_240243_2 - - - - 0.0000000007086 61.0
SHD1_k127_2419956_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006024 304.0
SHD1_k127_2419956_2 - - - - 0.0000000000000000000005428 105.0
SHD1_k127_2420442_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 342.0
SHD1_k127_2420442_1 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.00000000000000000000000000000000000000000000000009954 189.0
SHD1_k127_2420442_2 Protein of unknown function (DUF3467) - - - 0.00000000000000000000000000000001412 130.0
SHD1_k127_2420442_3 Histidine kinase - - - 0.00000000000000000000000000000006543 134.0
SHD1_k127_2420442_4 protein secretion - - - 0.000000000000002626 89.0
SHD1_k127_2420442_5 SdrD B-like domain - - - 0.00000001637 67.0
SHD1_k127_2420442_6 - - - - 0.0004874 46.0
SHD1_k127_2445265_0 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 1.32e-321 1024.0
SHD1_k127_2445265_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 1.388e-285 899.0
SHD1_k127_2445265_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 6.384e-209 659.0
SHD1_k127_2445265_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 384.0
SHD1_k127_2445265_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002227 331.0
SHD1_k127_2445265_5 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000004091 231.0
SHD1_k127_2447383_0 oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000289 393.0
SHD1_k127_2447383_1 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.00000000000000000000000000000000000000000000000000000000008069 216.0
SHD1_k127_2447383_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000002608 122.0
SHD1_k127_2447383_3 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000352 69.0
SHD1_k127_2451536_0 Pyridoxal-phosphate dependent enzyme - - - 5.293e-210 662.0
SHD1_k127_2451536_1 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001027 424.0
SHD1_k127_2465377_0 PFAM Phosphoglycerate mutase K02226,K22305 - 3.1.3.3,3.1.3.73 0.000000000000000000000000000004101 128.0
SHD1_k127_2465377_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000003064 92.0
SHD1_k127_2468227_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 325.0
SHD1_k127_2468227_1 luxR family - - - 0.000000000001364 81.0
SHD1_k127_2477650_0 Radical SAM superfamily K06871 - - 0.00000000000000000000000000000000000000000000000000000000000000658 229.0
SHD1_k127_2477650_1 metabolite transporter - - - 0.00000000000000000000000000000000000000000000000000000000000001238 230.0
SHD1_k127_2477650_2 Chromate resistance exported protein - - - 0.00000000000000000000000000000000000000000000000000000000000277 215.0
SHD1_k127_2482658_0 Anthranilate synthase component I, N terminal region K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009404 366.0
SHD1_k127_2482658_1 B12 binding domain - - - 0.00000000000000000000000005045 120.0
SHD1_k127_2482658_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000003415 101.0
SHD1_k127_2482658_3 Redoxin - - - 0.00000000000000000000006257 102.0
SHD1_k127_2482658_4 Tetratricopeptide repeat - - - 0.0000003947 63.0
SHD1_k127_2482658_5 Redoxin - - - 0.000003578 49.0
SHD1_k127_2504529_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081 499.0
SHD1_k127_2504529_1 Pyridoxal-dependent decarboxylase conserved domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 436.0
SHD1_k127_2504529_2 PFAM KaiB domain K08481 - - 0.00000000002042 64.0
SHD1_k127_2513441_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 1.625e-303 962.0
SHD1_k127_2513441_1 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 2.113e-291 912.0
SHD1_k127_2513441_2 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000002822 258.0
SHD1_k127_2513441_3 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000004586 192.0
SHD1_k127_2513441_4 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000004161 121.0
SHD1_k127_2513441_5 Evidence 5 No homology to any previously reported sequences K03643 GO:0001530,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0008289,GO:0009279,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031975,GO:0033036,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044462,GO:0044464,GO:0045229,GO:0051179,GO:0051234,GO:0061024,GO:0071702,GO:0071709,GO:0071840,GO:0071944,GO:0097367,GO:1901264 - 0.00000000000000002528 89.0
SHD1_k127_2519134_0 aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000495 267.0
SHD1_k127_2519134_1 oligosaccharyl transferase activity - - - 0.000000000000000001979 94.0
SHD1_k127_2524058_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001779 486.0
SHD1_k127_2524058_1 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000001203 214.0
SHD1_k127_2524058_2 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000003134 157.0
SHD1_k127_2524058_3 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000006663 134.0
SHD1_k127_2524058_4 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000005174 129.0
SHD1_k127_2524058_5 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000001956 77.0
SHD1_k127_2524462_0 Aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 438.0
SHD1_k127_2524462_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000001307 230.0
SHD1_k127_2524462_2 - - - - 0.00000000000000000000006441 101.0
SHD1_k127_2542395_0 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 512.0
SHD1_k127_2542395_1 Biotin/lipoate A/B protein ligase family K03801 - 2.3.1.181 0.0000000000000000000000000000000000000000000000000000000000034 230.0
SHD1_k127_2542395_2 Dehydrogenase E1 component K00161,K00166,K11381,K21416 - 1.2.4.1,1.2.4.4 0.000000000000000000000000000692 123.0
SHD1_k127_2550558_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006662 420.0
SHD1_k127_2550558_1 Belongs to the UPF0434 family K09791 - - 0.000000000000001586 79.0
SHD1_k127_2550558_2 Bacterial DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0000000000001515 78.0
SHD1_k127_2577022_0 transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000634 519.0
SHD1_k127_2577022_1 formate dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000002188 203.0
SHD1_k127_2577022_2 RNA polymerase K03088 - - 0.00000000000000000000000000000000005056 143.0
SHD1_k127_2577022_3 HlyD family secretion protein - - - 0.00000000000000000000000003912 122.0
SHD1_k127_2594774_0 Protein of unknown function (DUF512) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 321.0
SHD1_k127_2594774_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000002701 211.0
SHD1_k127_2623999_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 9.442e-274 865.0
SHD1_k127_2623999_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006335 557.0
SHD1_k127_2623999_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 295.0
SHD1_k127_2623999_3 PFAM aminotransferase class V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001981 255.0
SHD1_k127_2623999_4 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.000000000000000000000000001837 123.0
SHD1_k127_2633298_1 domain, Protein - - - 0.000006826 56.0
SHD1_k127_2641198_0 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 304.0
SHD1_k127_2641198_1 Permease YjgP YjgQ K11720 - - 0.000000000000000000000000000000000000000000000000000000166 207.0
SHD1_k127_2641198_2 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.000000000000000000000000000000000001232 147.0
SHD1_k127_2646914_0 WD40-like Beta Propeller Repeat - - - 1.766e-318 1005.0
SHD1_k127_2646914_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 548.0
SHD1_k127_2646914_2 enoyl-CoA hydratase K13766,K13779 - 4.2.1.18,4.2.1.57 0.0000000000000000000000000000000000000000000000002224 182.0
SHD1_k127_2646914_3 Peptidase S9, prolyl oligopeptidase active site domain protein K01322 - 3.4.21.26 0.000000000000000000008431 97.0
SHD1_k127_265163_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 1.17e-203 654.0
SHD1_k127_265163_1 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000656 614.0
SHD1_k127_265163_2 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 439.0
SHD1_k127_265163_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 435.0
SHD1_k127_265163_4 Domain of unknown function (DUF892) - - - 0.00000000000000000000000000000000000000000000002524 177.0
SHD1_k127_265163_5 Protein of unknown function (DUF1003) - - - 0.000000000000000000000000000000000000000000181 166.0
SHD1_k127_265163_6 PRC-barrel domain - - - 0.0000000000000000000000000000000000002251 144.0
SHD1_k127_265163_7 - - - - 0.000000000000000000000001154 106.0
SHD1_k127_265163_8 bacterial OsmY and nodulation domain - - - 0.000000000000000000001312 108.0
SHD1_k127_266514_0 von Willebrand factor (vWF) type A domain K07114,K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009416 325.0
SHD1_k127_266514_1 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009897 293.0
SHD1_k127_266514_2 Oxygen tolerance - - - 0.000000000000000000000000000000000000000000000000001724 192.0
SHD1_k127_266514_3 Tetratricopeptide repeat - - - 0.0000000000008847 78.0
SHD1_k127_266514_4 Oxygen tolerance - - - 0.00000008048 57.0
SHD1_k127_2667853_0 Asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000002255 259.0
SHD1_k127_2667853_1 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000003819 196.0
SHD1_k127_2667853_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000001423 203.0
SHD1_k127_2667853_3 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000002526 155.0
SHD1_k127_2667853_4 Iron-sulphur cluster biosynthesis K15724 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009061,GO:0009987,GO:0010467,GO:0015980,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055114,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000000000000003048 109.0
SHD1_k127_2667853_5 Flavin and coenzyme A sequestration protein dodecin K09165 - - 0.000000000000000000001188 105.0
SHD1_k127_2671750_0 bacterial-type flagellum-dependent cell motility - - - 0.00000000000000000000000000000000000000000000000006793 206.0
SHD1_k127_2671750_1 Bacteriochlorophyll chlorophyll K04040 - 2.5.1.133,2.5.1.62 0.00000000000000000000000002602 120.0
SHD1_k127_2689065_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005975 344.0
SHD1_k127_2689065_1 Metallopeptidase family M24 K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001541 301.0
SHD1_k127_2689065_2 B3/4 domain - - - 0.0000000000000000000000000000000000000000000000007467 182.0
SHD1_k127_2689065_3 peptidyl-tyrosine sulfation - - - 0.000000000000000000000000000000000000000006179 177.0
SHD1_k127_2692477_0 Nitrate reductase alpha subunit K17050 - - 2.088e-276 900.0
SHD1_k127_2692477_1 COG1140 Nitrate reductase beta subunit K17051 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008257 418.0
SHD1_k127_2692477_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004185 282.0
SHD1_k127_2692477_3 Ethylbenzene dehydrogenase K17052 - - 0.00000002914 65.0
SHD1_k127_2694459_0 Beta-lactamase class C - - - 1.505e-218 696.0
SHD1_k127_2694459_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000009101 216.0
SHD1_k127_269546_0 lysine biosynthetic process via aminoadipic acid - - - 4.693e-222 729.0
SHD1_k127_269546_1 TIGRFAM alpha-glucan - - - 0.00000000000000000000000000000000000000000000000000000000000000000002276 237.0
SHD1_k127_269758_0 cAMP biosynthetic process - - - 0.00000000000000000000003588 113.0
SHD1_k127_269758_1 Curli production assembly/transport component CsgG K04087 - - 0.00000000000003098 85.0
SHD1_k127_269758_2 Curli production assembly/transport component CsgG - - - 0.0000000000005332 81.0
SHD1_k127_269758_3 Galactose oxidase, central domain - - - 0.000000000886 72.0
SHD1_k127_2703852_0 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004449 473.0
SHD1_k127_2703852_1 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02481,K07714 - - 0.0000000000000001113 85.0
SHD1_k127_2717200_0 General secretory system II protein E domain protein K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 497.0
SHD1_k127_2717200_1 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 303.0
SHD1_k127_2717200_2 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.0000000000000000000000000000000000000000000000000001304 189.0
SHD1_k127_2717200_3 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000134 56.0
SHD1_k127_2722315_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000004498 179.0
SHD1_k127_2722315_1 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.000000000000000000000000000000001601 141.0
SHD1_k127_2728517_0 SMART AAA ATPase K02450 - - 0.00000000000000000000000000000000000000000000000000000000001502 221.0
SHD1_k127_2728517_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000001138 162.0
SHD1_k127_2733336_0 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000007922 158.0
SHD1_k127_2733336_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000001342 116.0
SHD1_k127_2733336_2 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000002817 86.0
SHD1_k127_2738747_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 493.0
SHD1_k127_2738747_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000619 340.0
SHD1_k127_2738747_2 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000003685 156.0
SHD1_k127_2743969_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251 320.0
SHD1_k127_2743969_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000004958 212.0
SHD1_k127_2743969_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.00000000000000000000000000000000000000000004115 164.0
SHD1_k127_2743969_3 Uncharacterized ACR, COG1399 K07040 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000004311 111.0
SHD1_k127_2743969_4 Ribosomal L32p protein family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.0000000000000000002972 89.0
SHD1_k127_2776931_0 HD domain - - - 0.000000000000000000000000000000000003444 156.0
SHD1_k127_2800373_0 PrkA AAA domain K07180 - - 0.0 1040.0
SHD1_k127_2800373_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 8.7e-322 999.0
SHD1_k127_2800373_2 PFAM SpoVR like protein K06415 - - 1.14e-202 656.0
SHD1_k127_2800373_3 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 515.0
SHD1_k127_2800373_4 Threonine alanine tRNA ligase second additional domain protein K01872 - 6.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 322.0
SHD1_k127_2800373_5 PFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000001626 246.0
SHD1_k127_2800373_6 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000005894 175.0
SHD1_k127_2800373_7 Hit family K02503 - - 0.00000000000000000000000000000000000000001265 156.0
SHD1_k127_2800373_8 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000004377 125.0
SHD1_k127_2809310_0 Protein conserved in bacteria - - - 0.000004591 60.0
SHD1_k127_2810242_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 466.0
SHD1_k127_2810242_1 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001466 378.0
SHD1_k127_2810242_2 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007977 252.0
SHD1_k127_2810242_3 Elongation factor SelB winged helix 3 K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000005562 226.0
SHD1_k127_2810242_4 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000004248 119.0
SHD1_k127_2817568_0 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000004402 224.0
SHD1_k127_2817568_1 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000000000002979 196.0
SHD1_k127_2817568_2 ATP-grasp domain K01921 - 6.3.2.4 0.000006437 49.0
SHD1_k127_286157_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1092.0
SHD1_k127_286157_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000001669 156.0
SHD1_k127_2865157_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007636 400.0
SHD1_k127_2865157_1 Protein kinase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005075 381.0
SHD1_k127_2865157_2 aconitate hydratase K01681 - 4.2.1.3 0.00000000000000000000000000000000002068 139.0
SHD1_k127_2871677_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002081 500.0
SHD1_k127_2871677_1 iron--sulfur cluster insertion protein erpA K13628,K15724 - - 0.000000000000000000000000000001198 127.0
SHD1_k127_2871677_2 chorismate mutase K06208 - 5.4.99.5 0.0000000000000000000000419 104.0
SHD1_k127_2876110_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 348.0
SHD1_k127_2876110_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 346.0
SHD1_k127_2876110_2 ABC transporter, ATP-binding protein K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005361 277.0
SHD1_k127_2876110_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.000000000000000000000000000000000000000000000000000000000009073 224.0
SHD1_k127_2876110_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.0000000000000008331 78.0
SHD1_k127_288694_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 443.0
SHD1_k127_288694_1 PFAM Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 427.0
SHD1_k127_288694_2 NYN domain - - - 0.0000000000000000002683 98.0
SHD1_k127_2889883_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008795,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016874,GO:0016879,GO:0016880,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.1.5,6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 513.0
SHD1_k127_2889883_1 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000001198 231.0
SHD1_k127_2903393_1 membrane transporter protein K07090 - - 0.00000001415 57.0
SHD1_k127_2903393_2 Belongs to the ompA family K03286 - - 0.0000001279 63.0
SHD1_k127_2903393_3 - - - - 0.0000006047 52.0
SHD1_k127_2936190_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000784 520.0
SHD1_k127_2936190_1 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000001291 237.0
SHD1_k127_2936190_2 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000001602 108.0
SHD1_k127_2936900_0 thiamine-phosphate kinase activity K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000007263 200.0
SHD1_k127_2936900_1 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000000000000000000000000001111 170.0
SHD1_k127_2936900_2 B12 binding domain - - - 0.00000003991 65.0
SHD1_k127_2936900_3 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179,K17105 - 2.5.1.39,2.5.1.42 0.000009926 53.0
SHD1_k127_2941436_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.000000000000000000000000000000000000000000000001246 195.0
SHD1_k127_2941436_1 5'-nucleotidase - - - 0.00000000000000000000000000000003358 141.0
SHD1_k127_2941436_2 nucleotide catabolic process - - - 0.0000000000000000000000000001359 129.0
SHD1_k127_2941436_3 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0009538 45.0
SHD1_k127_294227_0 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 370.0
SHD1_k127_294227_1 MotA/TolQ/ExbB proton channel family K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008152 265.0
SHD1_k127_294227_2 peptidyl-tyrosine sulfation K13992 - - 0.000000000000000000000000000000000000000000000004195 183.0
SHD1_k127_294227_3 Signal transduction protein - - - 0.0000000000000000000000000000001243 138.0
SHD1_k127_294227_4 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.00000000000000000001935 93.0
SHD1_k127_294227_5 SMART protein phosphatase 2C domain protein - - - 0.00000001305 59.0
SHD1_k127_294227_6 Periplasmic component of the Tol biopolymer transport system - - - 0.000002795 59.0
SHD1_k127_2953143_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 382.0
SHD1_k127_2953143_1 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K11779,K11784,K18285 - 1.21.98.1,2.5.1.120,2.5.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001202 283.0
SHD1_k127_2953143_2 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004084 278.0
SHD1_k127_2953143_3 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K00851,K00852,K01807 GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006014,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009117,GO:0009987,GO:0016853,GO:0016860,GO:0016861,GO:0019321,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564 2.7.1.12,2.7.1.15,5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000005014 221.0
SHD1_k127_2953143_4 Cation transport regulator - - - 0.000000000000000000000000000000000000000000000000002694 188.0
SHD1_k127_2953143_5 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000001533 145.0
SHD1_k127_2953143_6 beta-galactosidase activity K01190 - 3.2.1.23 0.00000115 60.0
SHD1_k127_2953587_0 3-isopropylmalate dehydratase activity K01681,K01703,K01704,K17749 - 4.2.1.3,4.2.1.33,4.2.1.35 1.717e-208 664.0
SHD1_k127_2953587_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000417 445.0
SHD1_k127_2953587_2 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.000000000000000000000000000000000000000127 157.0
SHD1_k127_2953587_3 Endonuclease Exonuclease Phosphatase - - - 0.0000000000000000000000000000000000000288 164.0
SHD1_k127_2953587_4 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.00000000000000000001486 108.0
SHD1_k127_2953587_5 - - - - 0.000000000009969 71.0
SHD1_k127_2953587_6 OsmC-like protein - - - 0.0007884 49.0
SHD1_k127_2957788_0 carboxylic acid catabolic process - - - 0.00000000000000000000000000000000000000000008109 170.0
SHD1_k127_2957788_1 3-demethylubiquinone-9 3-O-methyltransferase activity K20444 - - 0.000000000000000000000000000000000000000001138 165.0
SHD1_k127_2964355_0 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 443.0
SHD1_k127_2964355_1 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008328 285.0
SHD1_k127_2964355_2 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.000000000001707 81.0
SHD1_k127_2975712_0 Oxidoreductase NAD-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004473 265.0
SHD1_k127_2975712_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002505 263.0
SHD1_k127_2980616_0 MutL protein K00854 - 2.7.1.17 1.346e-245 770.0
SHD1_k127_2980616_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 516.0
SHD1_k127_2980616_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 436.0
SHD1_k127_2980616_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.000000000000000000000000000000000000000000000000000000000000000000005567 241.0
SHD1_k127_2980616_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000008542 169.0
SHD1_k127_2980616_5 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.0000000000000000000003955 98.0
SHD1_k127_2980616_6 - - - - 0.0000000000000000001546 95.0
SHD1_k127_2980616_7 - - - - 0.000000002934 70.0
SHD1_k127_2982591_0 domain protein K20276 - - 0.00000000000000000989 98.0
SHD1_k127_2982591_1 - - - - 0.000000007473 65.0
SHD1_k127_298911_0 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000009729 260.0
SHD1_k127_298911_1 Helix-turn-helix transcriptional regulator PuuR, cupin domain-containing - - - 0.0000000000000000000386 98.0
SHD1_k127_2996303_0 PFAM EAL domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 357.0
SHD1_k127_2996303_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001584 320.0
SHD1_k127_2996303_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.0000000000000000000000000000000000000000000000000000000000000000000000000262 265.0
SHD1_k127_2996303_3 Methyl-viologen-reducing hydrogenase, delta subunit K14127 - 1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000002391 205.0
SHD1_k127_2996303_4 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000004692 134.0
SHD1_k127_2996303_5 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.00000000000000006106 84.0
SHD1_k127_2996303_6 HDOD domain - - - 0.000002684 51.0
SHD1_k127_3012212_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.5e-323 1003.0
SHD1_k127_3012212_1 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000006619 270.0
SHD1_k127_3012212_2 - - - - 0.000000000000000000000000000000000000000000000000001679 187.0
SHD1_k127_3022120_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 577.0
SHD1_k127_3022120_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000118 580.0
SHD1_k127_3022120_2 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005249 474.0
SHD1_k127_3022120_3 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008239 334.0
SHD1_k127_3022120_4 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 338.0
SHD1_k127_3022120_5 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 320.0
SHD1_k127_3022120_6 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 325.0
SHD1_k127_3022120_7 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005102 285.0
SHD1_k127_3027592_0 Signal transducing histidine kinase, homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 488.0
SHD1_k127_3027592_1 TIGRFAM cytochrome C family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 404.0
SHD1_k127_3027592_10 Chemotaxis phosphatase CheX - - - 0.0002536 51.0
SHD1_k127_3027592_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000493 261.0
SHD1_k127_3027592_3 Chemotaxis protein methyltransferase K00575 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006479,GO:0006807,GO:0006935,GO:0008022,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0008983,GO:0009605,GO:0009987,GO:0010340,GO:0016020,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0032991,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051998,GO:0071704,GO:0071944,GO:0098561,GO:0140096,GO:1901564 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000408 245.0
SHD1_k127_3027592_4 Two component signalling adaptor domain K03408 - - 0.000000000000000000000000000000000000000000000003197 179.0
SHD1_k127_3027592_5 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000001965 160.0
SHD1_k127_3027592_6 CheD chemotactic sensory transduction K03411 - 3.5.1.44 0.000000000000000000000000000000000002803 153.0
SHD1_k127_3027592_7 - - - - 0.0000000000000000000000000002477 122.0
SHD1_k127_3027592_8 GGDEF domain K03413 - - 0.0000000000000000000001363 105.0
SHD1_k127_3027592_9 - - - - 0.0001741 52.0
SHD1_k127_3029226_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 517.0
SHD1_k127_3032616_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.058e-312 976.0
SHD1_k127_3032616_1 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 616.0
SHD1_k127_3032616_10 Polysaccharide lyase family 8, N terminal alpha-helical domain K19049 - 4.2.2.5 0.0000000000001507 84.0
SHD1_k127_3032616_11 cellulase activity - - - 0.0000000001602 74.0
SHD1_k127_3032616_13 Sigma-54 factor interaction domain-containing protein K02481,K07712,K07713 - - 0.0004317 43.0
SHD1_k127_3032616_2 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007121 289.0
SHD1_k127_3032616_3 iron ion homeostasis K03709,K04758 - - 0.00000000000000000000000000000000000000000002917 173.0
SHD1_k127_3032616_4 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.000000000000000000000000000000001103 146.0
SHD1_k127_3032616_5 Transcriptional regulator - - - 0.000000000000000000000001064 109.0
SHD1_k127_3032616_6 PFAM response regulator receiver - - - 0.0000000000000000000004739 102.0
SHD1_k127_3032616_7 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000009062 109.0
SHD1_k127_3032616_8 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000004429 102.0
SHD1_k127_3032616_9 transcriptional regulator K01420,K10914 - - 0.00000000000004861 81.0
SHD1_k127_3035714_0 cellulose binding - - - 4.932e-260 828.0
SHD1_k127_3035714_1 RNA polymerase sigma factor - - - 0.0000000000000000000000000000000000000000000000000000000000007383 216.0
SHD1_k127_3035714_2 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000005598 211.0
SHD1_k127_3035714_3 - - - - 0.00000000000000001761 85.0
SHD1_k127_3035714_4 - - - - 0.00000000001281 76.0
SHD1_k127_3045933_0 lipopolysaccharide transport protein B ATP-binding component of ABC superfamily K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 301.0
SHD1_k127_3045933_1 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001484 288.0
SHD1_k127_3045933_2 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000001382 200.0
SHD1_k127_3045933_3 SIS domain K06041 - 5.3.1.13 0.0000000000000000000000000000000000000000000000007574 184.0
SHD1_k127_3045933_4 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.0000000000000000000000000000000000002332 151.0
SHD1_k127_3045933_5 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.0000000000000000000000000000000005595 135.0
SHD1_k127_3045933_6 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000001652 133.0
SHD1_k127_3045933_7 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.0000000000000000000000000000007227 138.0
SHD1_k127_3048287_0 aldehyde-lyase activity K01621 - 4.1.2.22,4.1.2.9 0.0 1412.0
SHD1_k127_3048287_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005827 336.0
SHD1_k127_3081952_0 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 415.0
SHD1_k127_3081952_1 Sterol carrier protein domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007944 361.0
SHD1_k127_3081952_2 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000001193 111.0
SHD1_k127_3101437_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005972 590.0
SHD1_k127_3101437_1 TIGRFAM SUF system FeS K04488 - - 0.00000000000000000000000000000000000000000000000000000001985 201.0
SHD1_k127_3101437_2 Pfam:DUF59 K02612 - - 0.000000000000000000000000000000000009156 139.0
SHD1_k127_3101437_3 assembly protein, SufD K09015 - - 0.000000000000000000000000001968 113.0
SHD1_k127_3151621_0 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007014 304.0
SHD1_k127_3151621_1 glucosamine-1-phosphate N-acetyltransferase activity K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000002771 282.0
SHD1_k127_3151621_2 HD domain - - - 0.0000000000000000000000000000000000000000000000000007016 198.0
SHD1_k127_3155095_0 tRNA synthetases class II (D, K and N) K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005003 578.0
SHD1_k127_3155095_1 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000002339 105.0
SHD1_k127_3155095_2 PFAM Tetratricopeptide - - - 0.000000001618 70.0
SHD1_k127_3186252_0 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 407.0
SHD1_k127_3186252_1 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 355.0
SHD1_k127_3186252_2 signal sequence binding K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003009 281.0
SHD1_k127_3186252_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000000008342 231.0
SHD1_k127_3186252_4 - - - - 0.00000009861 61.0
SHD1_k127_3186252_5 Protein of unknown function (DUF3341) - - - 0.000006792 48.0
SHD1_k127_3205094_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 506.0
SHD1_k127_3205094_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001893 395.0
SHD1_k127_3205094_2 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 396.0
SHD1_k127_3205094_3 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005943 280.0
SHD1_k127_3205094_4 cellulose binding - - - 0.000000000000000000000000000000000000000000005114 189.0
SHD1_k127_3210637_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002678 447.0
SHD1_k127_3210637_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022607,GO:0032153,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0051258,GO:0051301,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006205 387.0
SHD1_k127_3210637_2 Cell division protein FtsQ K03589 - - 0.00000000615 66.0
SHD1_k127_3235071_0 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 344.0
SHD1_k127_3235071_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000001834 264.0
SHD1_k127_3235071_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000002568 227.0
SHD1_k127_3235071_3 Cytochrome oxidase assembly protein K02259 - - 0.0000000000000000000000000000000000000256 155.0
SHD1_k127_3235071_4 SCO1/SenC K07152,K08976 - - 0.00000000000000000000000000000007281 142.0
SHD1_k127_3235071_5 Protein of unknown function (DUF420) K08976 - - 0.00000000000000005552 83.0
SHD1_k127_3249144_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002254 274.0
SHD1_k127_3249144_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000000002889 248.0
SHD1_k127_3249144_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000009515 118.0
SHD1_k127_3249144_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001279 107.0
SHD1_k127_3249144_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000002912 89.0
SHD1_k127_3258160_0 Uncharacterised conserved protein (DUF2156) K04567,K14205 - 2.3.2.3,6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 419.0
SHD1_k127_3258160_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000003829 174.0
SHD1_k127_3266786_0 Major Facilitator Superfamily K03446 - - 4.304e-215 681.0
SHD1_k127_3266786_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 449.0
SHD1_k127_3266786_2 PFAM transferase hexapeptide repeat containing protein K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004079 396.0
SHD1_k127_3266786_3 Biotin-lipoyl like K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 377.0
SHD1_k127_3266786_4 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003497 251.0
SHD1_k127_3266786_5 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000089 174.0
SHD1_k127_327081_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 9.86e-254 799.0
SHD1_k127_327081_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 7.074e-206 665.0
SHD1_k127_327081_10 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000001721 118.0
SHD1_k127_327081_11 Protein of unknown function (DUF503) K09764 - - 0.000000002107 64.0
SHD1_k127_327081_2 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 419.0
SHD1_k127_327081_3 PFAM peptidase M16 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 345.0
SHD1_k127_327081_4 Peptidase M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004971 274.0
SHD1_k127_327081_5 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000005437 229.0
SHD1_k127_327081_6 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000004764 194.0
SHD1_k127_327081_7 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.0000000000000000000000000000000000000000001872 164.0
SHD1_k127_327081_8 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000005644 132.0
SHD1_k127_327081_9 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000003311 119.0
SHD1_k127_327501_0 Multidrug ABC transporter ATP-binding protein K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 463.0
SHD1_k127_327501_1 peptide catabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009846 357.0
SHD1_k127_327501_2 PFAM Peptidase M19, renal dipeptidase K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009591 282.0
SHD1_k127_327501_3 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002752 294.0
SHD1_k127_327501_4 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005942 252.0
SHD1_k127_327501_5 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000002604 180.0
SHD1_k127_327501_6 cellulase activity K01224,K01729 - 3.2.1.89,4.2.2.3 0.00027 53.0
SHD1_k127_3283056_0 Alpha-glucan phosphorylase K00688 - 2.4.1.1 5.787e-311 974.0
SHD1_k127_3283056_1 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 435.0
SHD1_k127_3283056_2 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000004648 238.0
SHD1_k127_3283056_3 PFAM PKD domain containing protein - - - 0.00000000000000000000000402 112.0
SHD1_k127_3283056_4 radical SAM domain protein - - - 0.00000000004807 68.0
SHD1_k127_3283056_5 - - - - 0.00000001189 67.0
SHD1_k127_3293781_0 PFAM FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000918 339.0
SHD1_k127_3293781_1 Domain of unknown function (DUF4932) - - - 0.0000151 57.0
SHD1_k127_3293781_2 Endonuclease/Exonuclease/phosphatase family - - - 0.00008498 53.0
SHD1_k127_3301010_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000001708 254.0
SHD1_k127_3301010_1 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000002453 211.0
SHD1_k127_3301010_2 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ K11910 - - 0.000000000000000000000000002275 119.0
SHD1_k127_3301226_0 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002611 386.0
SHD1_k127_3301226_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 359.0
SHD1_k127_3301226_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 366.0
SHD1_k127_3301226_3 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000004905 256.0
SHD1_k127_3310147_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 438.0
SHD1_k127_3310147_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 403.0
SHD1_k127_3310147_2 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 308.0
SHD1_k127_3310147_3 Transport permease protein - - - 0.000000000000004033 79.0
SHD1_k127_3310147_4 Belongs to the precorrin methyltransferase family K02302,K02303,K13542 - 1.3.1.76,2.1.1.107,4.2.1.75,4.99.1.4 0.00004165 46.0
SHD1_k127_3311292_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000004225 248.0
SHD1_k127_3325309_0 siderophore transport K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 552.0
SHD1_k127_3325309_1 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001154 296.0
SHD1_k127_3325309_2 HEPN domain - - - 0.0000000000000000000000000000000000008317 144.0
SHD1_k127_3358238_0 domain protein K07260 - 3.4.17.14 0.0000000000000000000000002869 123.0
SHD1_k127_3384539_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001819 282.0
SHD1_k127_3384539_1 Putative adhesin - - - 0.0000000000000000000000000000000000000000000000000000000000000000001224 244.0
SHD1_k127_3384539_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000001229 168.0
SHD1_k127_3384539_3 Putative adhesin - - - 0.00000000000000000000000008972 119.0
SHD1_k127_3384539_4 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000002635 109.0
SHD1_k127_3384539_5 AntiSigma factor K00567 - 2.1.1.63 0.0000006433 60.0
SHD1_k127_3410147_0 Lamin Tail Domain K07004 - - 0.0000000000000000000000000000003602 136.0
SHD1_k127_3410147_1 Ethanolamine utilisation protein EutN/carboxysome - - - 0.00000000000000000002749 96.0
SHD1_k127_3410147_2 Ethanolamine utilisation protein EutN/carboxysome K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.000000000000002414 80.0
SHD1_k127_3410147_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075,K15780 - 2.4.2.8,6.3.4.19 0.0002045 45.0
SHD1_k127_3422534_0 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 593.0
SHD1_k127_3422534_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 606.0
SHD1_k127_3422534_2 Aminotransferase class-V K01556 - 3.7.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003575 442.0
SHD1_k127_3422534_3 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation K07130 GO:0003674,GO:0003824,GO:0004061,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043167,GO:0043169,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.00000000000000000000000000000000000000000000006487 187.0
SHD1_k127_3459853_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006688 341.0
SHD1_k127_3459853_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002381 277.0
SHD1_k127_3459853_2 Mur ligase family, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000414 262.0
SHD1_k127_3459853_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.00000000000000000000000000000000000000000000000000001872 189.0
SHD1_k127_3459853_4 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000002139 93.0
SHD1_k127_3464824_0 ECF sigma factor - - - 0.00000000000000000000000000000000008577 139.0
SHD1_k127_3464824_1 - - - - 0.0000000000005595 81.0
SHD1_k127_3464824_2 PBS lyase HEAT-like repeat - - - 0.000325 53.0
SHD1_k127_3471889_0 Ribosomal protein S2 K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 316.0
SHD1_k127_3471889_1 Amino acid kinase family K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 310.0
SHD1_k127_3471889_2 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000863 262.0
SHD1_k127_3471889_3 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000001219 260.0
SHD1_k127_3471889_4 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000102 184.0
SHD1_k127_3471889_5 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000426 146.0
SHD1_k127_3471889_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000003826 124.0
SHD1_k127_3471889_7 amine dehydrogenase activity - - - 0.00003146 52.0
SHD1_k127_348012_0 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00207,K12527,K17723 - 1.3.1.1,1.3.1.2,1.97.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003013 390.0
SHD1_k127_348012_1 Belongs to the ATCase OTCase family - GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0019627,GO:0034641,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 330.0
SHD1_k127_3497773_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002224 507.0
SHD1_k127_3497773_1 - - - - 0.000000000000000004091 91.0
SHD1_k127_3529624_0 Thermophilic metalloprotease (M29) K19689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000732 482.0
SHD1_k127_3529624_1 Trypsin-like serine protease K01337 - 3.4.21.50 0.000000000000000000000000003841 130.0
SHD1_k127_3529624_2 Belongs to the peptidase S8 family - - - 0.000000000000004899 90.0
SHD1_k127_3529624_3 Bacterial Ig-like domain (group 1) - - - 0.00000000001912 78.0
SHD1_k127_355444_0 beta-galactosidase activity K01224 - 3.2.1.89 1.155e-269 863.0
SHD1_k127_355444_1 Glycosyl hydrolase family 1 K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 603.0
SHD1_k127_355444_2 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 325.0
SHD1_k127_357039_0 PFAM NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 355.0
SHD1_k127_357039_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005943 337.0
SHD1_k127_357039_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008269 296.0
SHD1_k127_357039_3 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000002676 196.0
SHD1_k127_358438_0 saccharopine dehydrogenase activity K19064 - 1.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 334.0
SHD1_k127_358438_1 TIGRFAM phosphohistidine phosphatase SixA K08296 - - 0.0000000000000000006287 93.0
SHD1_k127_358438_2 - - - - 0.000001647 58.0
SHD1_k127_3587773_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008503 599.0
SHD1_k127_3587773_1 von Willebrand factor (vWF) type A domain K07114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 410.0
SHD1_k127_3587773_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 387.0
SHD1_k127_3587773_3 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000002393 237.0
SHD1_k127_3587773_4 Short chain fatty acid transporter K02106 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000007745 205.0
SHD1_k127_3587773_5 creatininase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000107 164.0
SHD1_k127_358893_0 Thymidine kinase K00857 - 2.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000003663 248.0
SHD1_k127_358893_1 AAA ATPase domain K12132 - 2.7.11.1 0.00000000000000000000000000000004151 143.0
SHD1_k127_358893_2 Evidence 5 No homology to any previously reported sequences - - - 0.00000000004376 77.0
SHD1_k127_359113_0 Protein of unknown function (DUF3798) - - - 0.0000000000000000000000000000000000000000000000000003059 190.0
SHD1_k127_359113_1 Protein of unknown function (DUF3798) - - - 0.0000000000000000000000000000000000000000000000000008251 193.0
SHD1_k127_359113_2 Peptidase family S49 K04773 - - 0.0000000000000000000000000000000000000000001021 181.0
SHD1_k127_3601274_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 403.0
SHD1_k127_3601274_1 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000001961 70.0
SHD1_k127_3605670_0 Tetratricopeptide repeat - - - 0.000213 54.0
SHD1_k127_3611895_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 507.0
SHD1_k127_3611895_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000004632 233.0
SHD1_k127_3611895_2 dTDP-4-dehydrorhamnose 3,5-epimerase activity K01790 - 5.1.3.13 0.00000000000000000000000000000000000000000000000000000001401 203.0
SHD1_k127_3616950_0 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006362 399.0
SHD1_k127_3616950_1 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 370.0
SHD1_k127_3616950_2 Belongs to the glycosyl hydrolase 13 family - - - 0.00000002548 64.0
SHD1_k127_3637867_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 595.0
SHD1_k127_3637867_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 426.0
SHD1_k127_3637867_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 419.0
SHD1_k127_3637867_3 ADP-heptose synthase, bifunctional sugar kinase adenylyltransferase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000002428 85.0
SHD1_k127_3641573_0 DNA topoisomerase II activity K02469 - 5.99.1.3 0.0 1029.0
SHD1_k127_3641573_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 5.098e-276 865.0
SHD1_k127_3641573_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338,K03610 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.7.7.7 0.0000000000000000000000000000000000000000000003664 173.0
SHD1_k127_3641573_3 Protein of unknown function (DUF721) - - - 0.00000004609 59.0
SHD1_k127_3641573_4 Domain of unknown function (DUF4114) - - - 0.00002989 55.0
SHD1_k127_365111_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004368 451.0
SHD1_k127_365111_1 PFAM Glutamyl glutaminyl-tRNA synthetase, class Ic, catalytic K01886 - 6.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001495 371.0
SHD1_k127_365111_2 epimerase - - - 0.00000000000000000000000000000000000000000000000000000006379 208.0
SHD1_k127_3693456_0 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000000006944 226.0
SHD1_k127_3693456_1 PFAM Appr-1-p processing domain protein - - - 0.00000000000000000000000000000000000000000000003456 176.0
SHD1_k127_3693456_2 Belongs to the UPF0761 family K07058 - - 0.0000000000000000000000000000000001536 143.0
SHD1_k127_3693456_3 Belongs to the aldehyde dehydrogenase family K00128,K00146 - 1.2.1.3,1.2.1.39 0.00000000000000000000000000000005099 130.0
SHD1_k127_3693456_4 Yqey-like protein K09117 - - 0.000000000000000000000000000002894 124.0
SHD1_k127_3718774_0 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000168 401.0
SHD1_k127_3718774_1 - K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 310.0
SHD1_k127_3718774_2 Domain of unknown function (DUF4386) - - - 0.0000000000000000000000000000000000000000001394 174.0
SHD1_k127_3718774_3 Domain of unknown function (DUF4386) - - - 0.00000000000000000000000000001938 130.0
SHD1_k127_3718774_4 Domain of unknown function (DUF4386) - - - 0.0000000000000000000000001093 115.0
SHD1_k127_3718774_5 Chalcone isomerase-like - - - 0.000000000265 70.0
SHD1_k127_373699_0 Immune inhibitor A peptidase M6 - - - 0.000000000000000000000000000000000000000000000000007157 207.0
SHD1_k127_373699_1 Tetratricopeptide repeat K08309 - - 0.0000000000000000000000000000000000003626 163.0
SHD1_k127_373699_2 dolichyl monophosphate biosynthetic process K08591 - 2.3.1.15 0.0000000000000001275 88.0
SHD1_k127_373699_3 Fibronectin type 3 domain - - - 0.00003611 57.0
SHD1_k127_3744254_0 Soluble NSF attachment protein, SNAP - - - 0.000000000000000000000000000000000000000000000000000000000000000001686 246.0
SHD1_k127_3744254_1 - - - - 0.00000000000000003092 89.0
SHD1_k127_3744254_2 PFAM NHL repeat containing protein - - - 0.000000000000002676 88.0
SHD1_k127_3762931_0 transcription factor binding K02584,K11914 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 319.0
SHD1_k127_3762931_1 cellulase activity K06882 - - 0.0000000000000000000000000000000000000000000000000000000001501 215.0
SHD1_k127_3762931_2 PFAM AAA ATPase central domain protein - - - 0.0000000000000000000000000000000000000000000003472 185.0
SHD1_k127_3762931_3 cell adhesion involved in biofilm formation - - - 0.000000000000000000199 97.0
SHD1_k127_3769889_0 Peptidase M15 - - - 0.00000000000000000000000000000000000000000006458 176.0
SHD1_k127_3772287_0 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 517.0
SHD1_k127_3772287_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000196 276.0
SHD1_k127_3774438_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003646 489.0
SHD1_k127_3774438_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005859 381.0
SHD1_k127_3774438_2 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000001405 251.0
SHD1_k127_38121_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000000000000002147 226.0
SHD1_k127_38121_1 polysaccharide biosynthetic process - - - 0.00000000000000000000000003137 123.0
SHD1_k127_3818832_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 394.0
SHD1_k127_3818832_1 Belongs to the FPP GGPP synthase family K02523,K13789 - 2.5.1.1,2.5.1.10,2.5.1.29,2.5.1.90 0.0000000000000000000000000000000000005209 146.0
SHD1_k127_3818832_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000002026 125.0
SHD1_k127_3833930_0 PFAM Zinc carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 435.0
SHD1_k127_3833930_1 transporter mgtE - - - 0.00000000000001186 80.0
SHD1_k127_3838731_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 417.0
SHD1_k127_3838731_1 cellulase activity - - - 0.0000004326 63.0
SHD1_k127_3841297_0 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 383.0
SHD1_k127_3841297_1 Peptidase family C25 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 331.0
SHD1_k127_3850348_0 exodeoxyribonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000347 346.0
SHD1_k127_3850348_1 CBS domain-containing protein K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007536 358.0
SHD1_k127_3850348_2 radical SAM domain protein - - - 0.00000000000000000000001816 113.0
SHD1_k127_3863283_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 583.0
SHD1_k127_3863283_1 malonyl CoA-acyl carrier protein transacylase K00645,K15327,K15329,K15355,K15469 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001242 287.0
SHD1_k127_3863283_2 reductase K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000002432 277.0
SHD1_k127_3863283_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000002709 234.0
SHD1_k127_3863283_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000002108 113.0
SHD1_k127_3863283_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000008645 104.0
SHD1_k127_3865902_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 542.0
SHD1_k127_3865902_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 399.0
SHD1_k127_3865902_2 Peptidase dimerisation domain K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 346.0
SHD1_k127_3865902_3 nuclear chromosome segregation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001804 307.0
SHD1_k127_3865902_4 - - - - 0.000000000000000000000000005474 111.0
SHD1_k127_3865902_5 HAD-hyrolase-like K07025 - - 0.0000000000000000000000000979 117.0
SHD1_k127_3865902_6 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000001834 95.0
SHD1_k127_3865902_7 Type IV pilus biogenesis stability protein PilW - - - 0.00005933 56.0
SHD1_k127_3869054_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002599 428.0
SHD1_k127_3869054_1 LytTr DNA-binding domain - - - 0.00000000000000000000135 95.0
SHD1_k127_3870999_0 regulation of microtubule-based process K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 436.0
SHD1_k127_3870999_1 YceI-like domain - - - 0.000000000000000000001266 98.0
SHD1_k127_3870999_2 Transglutaminase-like superfamily - - - 0.0000000000000003243 91.0
SHD1_k127_3872547_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007171 572.0
SHD1_k127_3872547_1 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 K09667 GO:0000003,GO:0000123,GO:0000785,GO:0000791,GO:0001678,GO:0001932,GO:0001933,GO:0001934,GO:0002119,GO:0002164,GO:0002237,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0006040,GO:0006041,GO:0006047,GO:0006048,GO:0006073,GO:0006091,GO:0006109,GO:0006110,GO:0006111,GO:0006112,GO:0006139,GO:0006140,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006473,GO:0006475,GO:0006479,GO:0006486,GO:0006493,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0008194,GO:0008213,GO:0008219,GO:0008289,GO:0008361,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010646,GO:0010675,GO:0010799,GO:0010801,GO:0010876,GO:0010906,GO:0010941,GO:0012501,GO:0012505,GO:0015980,GO:0016020,GO:0016043,GO:0016262,GO:0016311,GO:0016407,GO:0016410,GO:0016485,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016579,GO:0016740,GO:0016746,GO:0016747,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019904,GO:0019915,GO:0022607,GO:0023051,GO:0023052,GO:0030141,GO:0030162,GO:0030246,GO:0030808,GO:0030811,GO:0030900,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032387,GO:0032434,GO:0032435,GO:0032496,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032922,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033135,GO:0033137,GO:0033157,GO:0033218,GO:0033500,GO:0033993,GO:0034284,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035020,GO:0035091,GO:0035220,GO:0035295,GO:0035556,GO:0036094,GO:0036211,GO:0036477,GO:0040024,GO:0042176,GO:0042177,GO:0042221,GO:0042277,GO:0042325,GO:0042326,GO:0042327,GO:0042578,GO:0042588,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043413,GO:0043414,GO:0043434,GO:0043467,GO:0043470,GO:0043543,GO:0043933,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045475,GO:0045793,GO:0045861,GO:0045862,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046349,GO:0046483,GO:0046578,GO:0046626,GO:0048015,GO:0048017,GO:0048029,GO:0048311,GO:0048312,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051056,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051223,GO:0051224,GO:0051235,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051568,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051704,GO:0051707,GO:0051716,GO:0055082,GO:0055086,GO:0055114,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060548,GO:0061085,GO:0061087,GO:0061136,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070201,GO:0070206,GO:0070207,GO:0070208,GO:0070646,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071396,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090066,GO:0090087,GO:0090313,GO:0090315,GO:0090317,GO:0097237,GO:0097363,GO:0097458,GO:0097708,GO:0099503,GO:0120025,GO:0140096,GO:1900037,GO:1900038,GO:1900076,GO:1900180,GO:1900182,GO:1900371,GO:1900542,GO:1901071,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901799,GO:1901981,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903426,GO:1903428,GO:1903506,GO:1903508,GO:1903533,GO:1903578,GO:1903827,GO:1903828,GO:1903829,GO:1904950,GO:1905269,GO:1905475,GO:1905476,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000377,GO:2000379,GO:2001141,GO:2001169,GO:2001252 2.4.1.255 0.000000000000000000000000176 121.0
SHD1_k127_3872547_2 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.0000000000000000002001 89.0
SHD1_k127_3872547_3 Protein of unknown function (DUF3426) - - - 0.0000004773 57.0
SHD1_k127_3885712_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000003009 175.0
SHD1_k127_3885712_2 Phospholipid methyltransferase - - - 0.0000000000003058 82.0
SHD1_k127_389237_0 Major facilitator Superfamily K08162,K08226,K16211 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001894 499.0
SHD1_k127_389237_1 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000002433 247.0
SHD1_k127_389237_2 DinB superfamily - - - 0.00000000000000000000000000002764 122.0
SHD1_k127_389237_3 - - - - 0.0000000000006733 75.0
SHD1_k127_3902960_0 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 350.0
SHD1_k127_3902960_1 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.0000000000008957 71.0
SHD1_k127_3906857_0 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 340.0
SHD1_k127_3906857_1 TIGRFAM glutamine amidotransferase of anthranilate synthase K01658,K01664 - 2.6.1.85,4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000006317 247.0
SHD1_k127_3906857_3 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.0004566 43.0
SHD1_k127_391497_0 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001803 279.0
SHD1_k127_391497_1 serine-type peptidase activity - - - 0.00000000000000000000000000000000000000000000000000003598 207.0
SHD1_k127_391497_3 Methyltransferase domain - - - 0.0000000001594 72.0
SHD1_k127_391924_0 Alcohol dehydrogenase GroES-associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 561.0
SHD1_k127_391924_1 Cyclase dehydrase - - - 0.00000000000000000000000000000000000000000000000000000000000005458 225.0
SHD1_k127_391924_2 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000002661 158.0
SHD1_k127_391924_3 Psort location OuterMembrane, score - - - 0.0000000005077 68.0
SHD1_k127_3945867_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003753 610.0
SHD1_k127_3945867_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0044237,GO:0044249,GO:0051186,GO:0051188 2.5.1.129 0.00000000000000000000000000000000000002257 153.0
SHD1_k127_3984797_0 OST-HTH/LOTUS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007855 344.0
SHD1_k127_3984797_1 CHAT domain - - - 0.0000000000000000000000000000000002159 148.0
SHD1_k127_3984797_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000005016 124.0
SHD1_k127_398485_0 PFAM NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 405.0
SHD1_k127_398485_1 Glycosyl transferase 4-like domain K12996 - - 0.000000000000000000000000000000000000000000000000000000000000000001231 242.0
SHD1_k127_398485_2 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.000000000000000000000000000000334 138.0
SHD1_k127_398485_3 polysaccharide export K01991 - - 0.0000000000000000000000311 105.0
SHD1_k127_398485_4 PEP-CTERM exosortase 1-associated glycosyltransferase, Daro_2409 family protein - - - 0.00000000000000000000167 111.0
SHD1_k127_399620_0 GTP-binding protein TypA K06207 - - 4.873e-258 808.0
SHD1_k127_399620_1 acyl-CoA dehydrogenase activity K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 0.00000000000000000000000000000000000000000000000000000000000000000001202 238.0
SHD1_k127_399620_2 5'-nucleotidase - - - 0.0000000000000000000000000000000002661 146.0
SHD1_k127_4007655_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003913 401.0
SHD1_k127_4007655_1 G/U mismatch-specific uracil-DNA glycosylase activity K20813 - 3.2.2.29 0.0000000000000000000000000000000000000000003159 164.0
SHD1_k127_4007655_2 - - - - 0.0000000000000000000002793 111.0
SHD1_k127_4007655_3 FlgD Ig-like domain - - - 0.00000000002217 72.0
SHD1_k127_4008078_0 Aldolase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000000001649 213.0
SHD1_k127_4008078_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.00000000000000000000000000000000000001087 153.0
SHD1_k127_4008078_2 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000001643 118.0
SHD1_k127_4016063_0 Belongs to the peptidase S8 family K01280 - 3.4.14.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001557 554.0
SHD1_k127_4016063_1 COG0665 Glycine D-amino acid oxidases (deaminating) K19746 - 1.4.99.6 0.0000000000000000000000000000000000000000000000000000000000005637 224.0
SHD1_k127_4016063_2 Protein of unknown function (DUF423) - - - 0.0000000000000000000000000000000148 143.0
SHD1_k127_4016063_3 acetyltransferase - - - 0.00000000000000000000000000002563 123.0
SHD1_k127_4024503_0 lipid kinase activity - - - 0.0000000000000000000000000000000000000000000006126 179.0
SHD1_k127_4024503_1 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.000000000000000000000000000000000001895 145.0
SHD1_k127_403164_0 Acetokinase family K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008873 294.0
SHD1_k127_403164_1 SMART Tetratricopeptide domain protein - - - 0.000000000000001386 91.0
SHD1_k127_4032721_1 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000000000008284 141.0
SHD1_k127_4032721_2 - - - - 0.0000000000000000000001796 104.0
SHD1_k127_4032721_3 - - - - 0.000000000005164 75.0
SHD1_k127_4066240_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 9.659e-258 820.0
SHD1_k127_4066240_1 - - - - 0.00000000000000000000000000003039 121.0
SHD1_k127_4066240_2 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000008089 104.0
SHD1_k127_4066240_3 Hsp20/alpha crystallin family - - - 0.00000000000000000455 90.0
SHD1_k127_4089610_0 ErfK YbiS YcfS YnhG family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 326.0
SHD1_k127_4089610_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K14189 - - 0.0000000000000000000000000000000000000000000000000000000000002278 221.0
SHD1_k127_4089610_2 Protein of unknown function (DUF2723) K14340 - - 0.000000000000004427 89.0
SHD1_k127_4089610_3 antibiotic catabolic process - - - 0.0002295 53.0
SHD1_k127_4091461_0 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000002787 195.0
SHD1_k127_4091461_2 - - - - 0.00000000000000000000000003453 114.0
SHD1_k127_4091461_3 - - - - 0.00000000002552 71.0
SHD1_k127_4091461_4 FR47-like protein K03823 - 2.3.1.183 0.000619 50.0
SHD1_k127_4100933_0 Vitamin B12 dependent methionine synthase activation K00548 - 2.1.1.13 0.0 1454.0
SHD1_k127_4100933_1 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 1.823e-262 826.0
SHD1_k127_4100933_2 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 5.548e-257 806.0
SHD1_k127_4100933_3 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016491,GO:0016625,GO:0016903,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0047553,GO:0055114,GO:0071704,GO:0071944,GO:0072350 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 443.0
SHD1_k127_4107826_0 DNA polymerase K02337,K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004472 537.0
SHD1_k127_4107826_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003085 266.0
SHD1_k127_4137467_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 463.0
SHD1_k127_4137467_1 Involved in the tonB-independent uptake of proteins - - - 0.00000000000002105 76.0
SHD1_k127_4144312_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 3.064e-211 665.0
SHD1_k127_4144312_1 nUDIX hydrolase K03574,K03575 - 3.6.1.55 0.00000000000000000000000000001284 127.0
SHD1_k127_4144312_2 Copper binding proteins, plastocyanin/azurin family - - - 0.000000000189 70.0
SHD1_k127_4147265_0 Heat shock 70 kDa protein K04043 GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010033,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0018995,GO:0019219,GO:0019222,GO:0020003,GO:0022607,GO:0030430,GO:0030554,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043531,GO:0043656,GO:0043657,GO:0043933,GO:0044085,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0065010,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141 - 1.147e-301 935.0
SHD1_k127_4147265_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 383.0
SHD1_k127_4147265_2 maltose binding K02027,K17329 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 377.0
SHD1_k127_4147265_3 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001383 279.0
SHD1_k127_4147265_4 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002844 282.0
SHD1_k127_4147265_5 Domain of unknown function (DUF1844) - - - 0.0000004448 58.0
SHD1_k127_4148638_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004976 388.0
SHD1_k127_4148638_1 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002135 308.0
SHD1_k127_4148638_2 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000006511 235.0
SHD1_k127_4148638_3 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000003203 158.0
SHD1_k127_4148638_4 AntiSigma factor - - - 0.0000000000000000000001227 110.0
SHD1_k127_4148638_5 PFAM Uncharacterised protein family UPF0150 - - - 0.0008684 44.0
SHD1_k127_4154519_0 Domains REC, sigma54 interaction, HTH8 K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 418.0
SHD1_k127_4154519_1 Signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000001826 186.0
SHD1_k127_4154519_2 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000057 107.0
SHD1_k127_4165669_0 ATP-dependent DNA helicase activity K01144,K07464,K16898 - 3.1.11.5,3.1.12.1,3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 423.0
SHD1_k127_4165669_1 - - - - 0.00000000000000000000000000000003514 135.0
SHD1_k127_4170933_0 Immune inhibitor A peptidase M6 - - - 0.00000000000000000000000000000000000000000000000000000000000000001875 250.0
SHD1_k127_4170933_1 PFAM phosphoesterase, PA-phosphatase related K19302 - 3.6.1.27 0.000000000000000000000002726 108.0
SHD1_k127_4187379_0 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000005256 91.0
SHD1_k127_4187379_1 Belongs to the peptidase M10A family K07761,K07999 GO:0001101,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016787,GO:0019538,GO:0031224,GO:0031225,GO:0032502,GO:0040007,GO:0042221,GO:0043170,GO:0044238,GO:0044425,GO:0044464,GO:0046686,GO:0048519,GO:0048580,GO:0048583,GO:0048589,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080186,GO:0140096,GO:1900055,GO:1900056,GO:1901564,GO:1901700,GO:1905622,GO:2000024,GO:2000026,GO:2000028,GO:2000241 - 0.000006129 61.0
SHD1_k127_4188326_0 Domain of unknown function (DUF1998) K06877 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002349 286.0
SHD1_k127_4188326_1 Cys/Met metabolism PLP-dependent enzyme K01739,K01761 - 2.5.1.48,4.4.1.11 0.000000000000000000000000000000000000000000000000000001531 200.0
SHD1_k127_4188326_2 RNase_H superfamily K07502 - - 0.0000000000000000000000000000002458 134.0
SHD1_k127_4193146_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 425.0
SHD1_k127_4193146_1 major pilin protein fima - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002678 294.0
SHD1_k127_4193146_2 Chromate transporter K07240 - - 0.0000000000000000000000000000000000000000000000000722 194.0
SHD1_k127_4193146_3 water channel activity K02440,K06188,K09874 - - 0.000000000000000000000000000000000000002228 152.0
SHD1_k127_4193384_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007075 315.0
SHD1_k127_4193384_1 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006966 284.0
SHD1_k127_4193384_2 Deoxynucleoside kinase K15518 - 2.7.1.113 0.00000000000000000000000000000000000000000000000000000000000000000000001614 250.0
SHD1_k127_4193384_3 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000001318 231.0
SHD1_k127_4193384_4 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000003827 221.0
SHD1_k127_4193384_5 Hit family K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000004019 176.0
SHD1_k127_4193384_6 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.000000000000000000000000000000000000008275 154.0
SHD1_k127_4193384_7 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000002285 108.0
SHD1_k127_4193384_8 LytR cell envelope-related transcriptional attenuator - - - 0.00000008098 59.0
SHD1_k127_4193384_9 Cellulose synthase operon protein C C-terminus (BCSC_C) K20543 - - 0.0004862 53.0
SHD1_k127_4197525_0 CHAT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 446.0
SHD1_k127_4197525_1 beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008074 288.0
SHD1_k127_4197525_2 Serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000004664 229.0
SHD1_k127_4197525_3 polysaccharide catabolic process K01179,K01218 - 3.2.1.4,3.2.1.78 0.00000000000000004771 97.0
SHD1_k127_4197525_4 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000000106 61.0
SHD1_k127_4197525_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000001169 64.0
SHD1_k127_4207734_0 COG0534 Na -driven multidrug efflux pump K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 418.0
SHD1_k127_4207734_1 Belongs to the peptidase M48B family K03799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 340.0
SHD1_k127_4207734_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000002987 229.0
SHD1_k127_4210833_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 3.71e-197 640.0
SHD1_k127_4210833_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 336.0
SHD1_k127_4210833_2 sporulation initiation inhibitor protein Soj K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 317.0
SHD1_k127_4210833_3 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006294 291.0
SHD1_k127_4210833_4 Belongs to the ParB family K03497 GO:0005575,GO:0005622,GO:0005623,GO:0007059,GO:0008150,GO:0009295,GO:0009987,GO:0022603,GO:0042173,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0043937,GO:0043938,GO:0044424,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000003605 250.0
SHD1_k127_4210833_5 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000002723 111.0
SHD1_k127_4210833_6 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.00000000000000000000006246 109.0
SHD1_k127_4210833_7 Polymer-forming cytoskeletal - - - 0.000000000000000007542 89.0
SHD1_k127_4210833_8 Domain of unknown function (DUF2088) - - - 0.0000000007546 63.0
SHD1_k127_4215778_0 glycosyl transferase group 1 K00754 - - 0.000000000000000000000000000000000000000000000000000000000000005294 231.0
SHD1_k127_4215778_1 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.000000000000000000000000000000000000000000004737 178.0
SHD1_k127_4215778_2 Outer membrane lipoprotein - - - 0.000000000000000000000000000128 120.0
SHD1_k127_4216505_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009037 601.0
SHD1_k127_4216505_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003213 312.0
SHD1_k127_4222438_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000009142 233.0
SHD1_k127_4222438_1 oxidase subunit - - - 0.00000000000000000000000001665 122.0
SHD1_k127_4223197_0 adenosylhomocysteinase activity K01251 - 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 621.0
SHD1_k127_4223197_1 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000001728 250.0
SHD1_k127_4223197_2 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000001069 205.0
SHD1_k127_4223197_3 PFAM Methyltransferase type 11 K03892 - - 0.00000000000000000000000000000000000000000000001083 185.0
SHD1_k127_4230987_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 441.0
SHD1_k127_4230987_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005353 350.0
SHD1_k127_4230987_2 PFAM SMP-30 Gluconolaconase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 344.0
SHD1_k127_4230987_3 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009878 299.0
SHD1_k127_4230987_4 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000000000000000000000000000000000000000000000000000000003493 211.0
SHD1_k127_4230987_5 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000003332 174.0
SHD1_k127_4230987_6 TPR repeat - - - 0.0000000000000000001982 98.0
SHD1_k127_4241755_0 PA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008266 425.0
SHD1_k127_4255468_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 595.0
SHD1_k127_4255468_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003645 411.0
SHD1_k127_4255468_2 Surface antigen - - - 0.000000000000000000000000000000000000008842 164.0
SHD1_k127_4255468_3 FtsZ-dependent cytokinesis - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000008976 90.0
SHD1_k127_4255780_0 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 460.0
SHD1_k127_4255780_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000003634 220.0
SHD1_k127_4259012_0 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.0000000000000001839 84.0
SHD1_k127_4259012_1 oligosaccharyl transferase activity - - - 0.0000000001421 73.0
SHD1_k127_4267072_0 coproporphyrinogen oxidase activity K02495 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.98.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 400.0
SHD1_k127_4267072_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006489 329.0
SHD1_k127_4267072_2 imidazolonepropionase activity - - - 0.0000000000000000000000000000000000000000000000000000000000203 217.0
SHD1_k127_4267072_3 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000001341 148.0
SHD1_k127_4275098_0 Glycosyltransferase 36 associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009148 456.0
SHD1_k127_4275098_1 cellulose binding K00505 - 1.14.18.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000056 411.0
SHD1_k127_4275098_2 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001189 280.0
SHD1_k127_4275098_3 Glycosyltransferase 36 associated - - - 0.00000000000000000000000000000000000000000000000000656 195.0
SHD1_k127_4283024_0 rRNA binding K02886 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 389.0
SHD1_k127_4283024_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001634 273.0
SHD1_k127_4283024_10 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000001017 158.0
SHD1_k127_4283024_11 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000002758 146.0
SHD1_k127_4283024_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000006624 136.0
SHD1_k127_4283024_13 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000611 119.0
SHD1_k127_4283024_14 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000002592 119.0
SHD1_k127_4283024_15 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000003725 113.0
SHD1_k127_4283024_16 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001292 98.0
SHD1_k127_4283024_17 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.000000007267 59.0
SHD1_k127_4283024_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001529 245.0
SHD1_k127_4283024_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000005778 246.0
SHD1_k127_4283024_4 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000824 227.0
SHD1_k127_4283024_5 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000002155 223.0
SHD1_k127_4283024_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000002664 201.0
SHD1_k127_4283024_7 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000006427 202.0
SHD1_k127_4283024_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0008150,GO:0015934,GO:0016020,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071944,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000001992 178.0
SHD1_k127_4283024_9 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000008498 174.0
SHD1_k127_4288371_0 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 361.0
SHD1_k127_4288371_1 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000004152 131.0
SHD1_k127_4288371_2 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.0000000000000000000000001389 118.0
SHD1_k127_4324458_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004513 557.0
SHD1_k127_4324458_1 Cytochrome C assembly protein K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002262 509.0
SHD1_k127_4324458_2 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 310.0
SHD1_k127_4324458_3 AMMECR1 K06990,K09141 - - 0.00000000000000000000000000000000000000000000000000000000000000002898 242.0
SHD1_k127_4324458_4 Cytochrome C assembly protein K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016021,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0031224,GO:0031226,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.0000000000000000000000000000000000000000000000000000000000007382 217.0
SHD1_k127_4324458_5 CcmB protein K02193,K02194 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031224,GO:0031226,GO:0032991,GO:0042623,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.41 0.0000000000000000000000000000000000000000000000000000004365 201.0
SHD1_k127_4324458_6 PFAM ABC transporter related K02193 - 3.6.3.41 0.000000000000000000000000000000000000568 159.0
SHD1_k127_4324458_7 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000009498 116.0
SHD1_k127_4330849_0 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000001141 185.0
SHD1_k127_4330849_1 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000001079 124.0
SHD1_k127_4330849_2 alginic acid biosynthetic process - - - 0.00000000000001986 85.0
SHD1_k127_433887_0 Sugar-specific transcriptional regulator TrmB - - - 0.0000000000000000000000003782 116.0
SHD1_k127_433887_1 Glycosyl transferase family 21 - - - 0.000000000000000000005988 105.0
SHD1_k127_433887_2 Protein of unknown function (DUF2400) - - - 0.000000000001135 75.0
SHD1_k127_433887_3 Sulfotransferase family - - - 0.0000003222 63.0
SHD1_k127_4342832_0 RelA SpoT domain protein - - - 0.000000000000000000000000000000000000000000000000000002339 202.0
SHD1_k127_4342832_1 Belongs to the peptidase S11 family K01286,K07258,K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 3.4.16.4 0.00000000000000000000000000000000000000000000000002241 194.0
SHD1_k127_4342832_2 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000004004 191.0
SHD1_k127_4342832_3 Could be involved in septation K06412 - - 0.00000000000002608 79.0
SHD1_k127_4342832_4 amino acid activation for nonribosomal peptide biosynthetic process K01183 - 3.2.1.14 0.00000000000003406 86.0
SHD1_k127_4345936_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.047e-232 730.0
SHD1_k127_4345936_1 PFAM Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 407.0
SHD1_k127_4345936_2 peroxiredoxin activity K02199 - - 0.0000000000000000000000000000004314 128.0
SHD1_k127_4345936_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000003394 129.0
SHD1_k127_4372674_0 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001795 475.0
SHD1_k127_4372674_1 Zinc-binding dehydrogenase K07538 - 1.1.1.368 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 351.0
SHD1_k127_4372674_2 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000001538 264.0
SHD1_k127_4373888_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.365e-197 636.0
SHD1_k127_4373888_1 ArgE DapE Acy1 family protein K01438,K01439 - 3.5.1.16,3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 520.0
SHD1_k127_4373888_2 ABC 3 transport family K02075 - - 0.000000000000000000000000000000000000000000000000000000004974 208.0
SHD1_k127_4373888_3 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.000000000000000000000000000000000000000000002039 178.0
SHD1_k127_4373888_4 arylsulfatase activity K01133 - 3.1.6.6 0.000000000000000000000000000000000000353 162.0
SHD1_k127_4373888_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000002623 120.0
SHD1_k127_4373888_6 - - - - 0.00000000000000003845 94.0
SHD1_k127_4373888_7 membrane protein (DUF2079) - - - 0.0000000000007203 82.0
SHD1_k127_4373888_8 - - - - 0.00008576 51.0
SHD1_k127_4374163_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008305 419.0
SHD1_k127_4374163_1 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002112 386.0
SHD1_k127_4374163_2 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 305.0
SHD1_k127_4374163_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00000000007775 68.0
SHD1_k127_4389392_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 430.0
SHD1_k127_4389392_1 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.0000000000000000000000000009918 123.0
SHD1_k127_4389392_2 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000000001211 82.0
SHD1_k127_4389545_0 Histidine kinase - - - 0.00000000005015 76.0
SHD1_k127_4403941_0 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009414 314.0
SHD1_k127_4403941_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000005539 119.0
SHD1_k127_4403941_2 PFAM Hydantoinase B oxoprolinase K01474 - 3.5.2.14 0.0000000000001176 73.0
SHD1_k127_440423_0 FAD dependent oxidoreductase K00303,K21061 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000697 295.0
SHD1_k127_440423_1 competence protein COMEC K02238 - - 0.0000000000000000000000000000000000397 146.0
SHD1_k127_440423_2 amine dehydrogenase activity - - - 0.00000000000000000000000000000000007283 140.0
SHD1_k127_440423_3 Protease prsW family - - - 0.000000000000000000000000003682 125.0
SHD1_k127_4424566_0 Acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003298 258.0
SHD1_k127_4424566_1 phosphoenolpyruvate carboxykinase (ATP) activity K01610 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005488,GO:0005509,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0017076,GO:0019318,GO:0019319,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901576 4.1.1.49 0.00000000000000000000000000000000000000000000000000000000000000008605 241.0
SHD1_k127_4424566_2 Iron-binding zinc finger CDGSH type K06886 - - 0.00000000000001646 75.0
SHD1_k127_4433625_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000001284 154.0
SHD1_k127_4433625_1 Protein of unknown function DUF86 - - - 0.000000000000000000001855 95.0
SHD1_k127_4439596_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007744 433.0
SHD1_k127_4439596_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 372.0
SHD1_k127_4439596_2 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001388 331.0
SHD1_k127_4439596_3 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005108 262.0
SHD1_k127_4439596_4 DHH family K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000008841 197.0
SHD1_k127_4439596_5 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000175 127.0
SHD1_k127_4439596_6 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000006893 118.0
SHD1_k127_4439596_7 Ribosomal protein S21 K02970 - - 0.0000000000000003726 79.0
SHD1_k127_4439596_8 self proteolysis - - - 0.00000004399 63.0
SHD1_k127_4445182_0 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 319.0
SHD1_k127_4445182_1 ECF sigma factor K03088 - - 0.0000000000000000000000000316 117.0
SHD1_k127_4445182_2 YceI-like domain - - - 0.00000001169 62.0
SHD1_k127_4462142_0 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 434.0
SHD1_k127_4462142_1 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000001155 244.0
SHD1_k127_4462142_2 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000004138 166.0
SHD1_k127_4462142_3 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696,K01817 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20,5.3.1.24 0.000000000222 62.0
SHD1_k127_4462252_0 Tetratricopeptide repeat - - - 0.00000000000000008157 86.0
SHD1_k127_44625_0 Amidase K01426 - 3.5.1.4 3.607e-212 672.0
SHD1_k127_44625_1 Transglutaminase-like superfamily - - - 0.000000000000000000000000000000000001599 153.0
SHD1_k127_44625_2 protein-disulfide reductase activity - - - 0.0000000002873 68.0
SHD1_k127_4484816_0 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000128 238.0
SHD1_k127_4484816_1 cyclic nucleotide binding K00384,K01999,K07001,K10914 - 1.8.1.9 0.00000000001643 72.0
SHD1_k127_4484816_2 Surface antigen - - - 0.00000002103 67.0
SHD1_k127_4507696_0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 1.692e-257 807.0
SHD1_k127_4507696_1 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000002811 90.0
SHD1_k127_4507696_2 YceI-like domain - - - 0.00000002467 64.0
SHD1_k127_4511108_0 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 318.0
SHD1_k127_4511108_1 TonB C terminal K03646,K03832 - - 0.0000000000005059 80.0
SHD1_k127_4511108_2 Protein of unknown function (DUF507) - - - 0.000000005035 63.0
SHD1_k127_4511108_3 Protein of unknown function (DUF507) - - - 0.00003042 50.0
SHD1_k127_4511722_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.644e-253 794.0
SHD1_k127_4511722_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000000000000000001878 240.0
SHD1_k127_4511722_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000004495 205.0
SHD1_k127_4511722_3 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000004335 201.0
SHD1_k127_4511722_4 - - - - 0.0000004505 60.0
SHD1_k127_4526675_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000004219 172.0
SHD1_k127_4526675_1 PFAM phosphatidate cytidylyltransferase K18678 - 2.7.1.182 0.000000000000000000000000000000006695 138.0
SHD1_k127_4526675_2 aminopeptidase activity - - - 0.0009151 50.0
SHD1_k127_4529384_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000000000000000000000000000000000000000000000000000000008947 210.0
SHD1_k127_4529384_1 NlpC/P60 family - - - 0.0000000000000000000000000000000000003278 155.0
SHD1_k127_4529384_2 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000004946 143.0
SHD1_k127_4529384_3 Peptidase M56 - - - 0.000000000000000000000000000000007272 147.0
SHD1_k127_4529384_4 COG4677 Pectin methylesterase K01051 - 3.1.1.11 0.00002509 54.0
SHD1_k127_4546726_0 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008086 561.0
SHD1_k127_4546726_1 Memo-like protein K06990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 466.0
SHD1_k127_4546726_2 Integral membrane protein TerC family K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 379.0
SHD1_k127_4546726_3 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000343 106.0
SHD1_k127_4546726_4 endonuclease activity K07451 - - 0.00000000000000000001978 103.0
SHD1_k127_4563245_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008076 459.0
SHD1_k127_4563245_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 425.0
SHD1_k127_4563245_2 PFAM Thiamine pyrophosphate K00170,K00187 - 1.2.7.1,1.2.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 384.0
SHD1_k127_4563245_3 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000009997 194.0
SHD1_k127_4563245_4 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.0000000000000000000000000000000001984 139.0
SHD1_k127_4565583_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008608 363.0
SHD1_k127_4565583_1 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 305.0
SHD1_k127_4565583_2 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000005756 213.0
SHD1_k127_4565583_3 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000005548 201.0
SHD1_k127_4565748_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 295.0
SHD1_k127_4565748_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001846 283.0
SHD1_k127_4565748_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000001594 186.0
SHD1_k127_4565748_3 Ami_3 K01448 - 3.5.1.28 0.00000000000000000003194 98.0
SHD1_k127_4565748_4 Sporulation and spore germination - - - 0.000000000000243 78.0
SHD1_k127_4586676_0 PFAM NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 616.0
SHD1_k127_4586676_1 Cytochrome c - - - 0.0000000000000000000000000000000000004255 151.0
SHD1_k127_4586676_2 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.00000000000000000000000000002551 129.0
SHD1_k127_4586676_3 X-Pro dipeptidyl-peptidase (S15 family) - - - 0.00003241 48.0
SHD1_k127_4597060_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000009318 278.0
SHD1_k127_4597060_1 COG0346 Lactoylglutathione lyase and related lyases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007239 257.0
SHD1_k127_4597060_2 InterPro IPR014922 - - - 0.0000000000000000000000000000000000000000000000000000000003001 206.0
SHD1_k127_4597060_3 AI-2E family transporter - - - 0.000000000000000000000000000000000005383 152.0
SHD1_k127_4597060_4 peptidyl-tyrosine sulfation - - - 0.00000004599 63.0
SHD1_k127_4606768_0 Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 398.0
SHD1_k127_4606768_1 Mo-molybdopterin cofactor biosynthetic process K03637 - 4.6.1.17 0.000000000000000000000000000000000000000000000007222 173.0
SHD1_k127_4606768_2 domain protein - - - 0.0000000000000000000000000000002137 136.0
SHD1_k127_460785_0 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 489.0
SHD1_k127_460785_1 Putative methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 331.0
SHD1_k127_460785_2 Mo-molybdopterin cofactor metabolic process K03636,K21147 - 2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000254 151.0
SHD1_k127_4621182_0 peroxiredoxin activity K03564,K07638 - 1.11.1.15,2.7.13.3 0.00000000000000005296 87.0
SHD1_k127_4621182_1 - - - - 0.0000000000000004039 93.0
SHD1_k127_4630105_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0 1095.0
SHD1_k127_4630105_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031 351.0
SHD1_k127_4630105_2 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000008858 174.0
SHD1_k127_4630105_3 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000000000000000000002357 141.0
SHD1_k127_4630105_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.4.23.36 0.00000000000000000000008853 108.0
SHD1_k127_4630105_5 PFAM DivIVA K04074 - - 0.000000000000000000000503 104.0
SHD1_k127_4630105_6 Belongs to the UPF0235 family K09131 - - 0.000000000000005509 85.0
SHD1_k127_4630105_7 Beta-propeller repeat - - - 0.000008866 56.0
SHD1_k127_4664250_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 1.596e-244 769.0
SHD1_k127_4664250_1 class I DNA-(apurinic or apyrimidinic site) endonuclease activity K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000561 329.0
SHD1_k127_4664250_2 Enoyl-(Acyl carrier protein) reductase K14189 - - 0.000001052 51.0
SHD1_k127_4670110_0 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007815 574.0
SHD1_k127_4670110_1 phosphorelay sensor kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 315.0
SHD1_k127_4670110_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003343 240.0
SHD1_k127_4670110_3 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000001938 193.0
SHD1_k127_4670110_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.00000000000000000000000000000000000000008209 161.0
SHD1_k127_4670110_5 Capsule assembly protein Wzi - - - 0.000000000000000000000000000003263 138.0
SHD1_k127_4670110_6 Polypeptide deformylase - - - 0.0000000000000001869 81.0
SHD1_k127_4670110_7 cellulose binding K00505 - 1.14.18.1 0.0000000002591 74.0
SHD1_k127_467081_0 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003682 263.0
SHD1_k127_467081_1 endonuclease activity K07451 - - 0.000000000000000000000001164 111.0
SHD1_k127_467081_2 Glycosyltransferase like family 2 K07011,K20444 - - 0.00003305 57.0
SHD1_k127_4672014_0 alpha/beta hydrolase fold K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001939 276.0
SHD1_k127_4672014_1 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.000000000000000000000000000000008686 141.0
SHD1_k127_4672014_2 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000001038 96.0
SHD1_k127_4676755_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003942 593.0
SHD1_k127_4676755_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007162 303.0
SHD1_k127_4676755_2 PFAM peptidase M16 domain protein - - - 0.0000000000000000000000000000000000000000000218 170.0
SHD1_k127_4695791_0 penicillin binding K05367 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 431.0
SHD1_k127_4695791_1 Alpha-2-Macroglobulin K06894 - - 0.0000000000000000000000000000000000000000000000000000000000000006224 243.0
SHD1_k127_4710074_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004555 402.0
SHD1_k127_4710074_1 PFAM TrkA-C domain protein K11105 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009839 292.0
SHD1_k127_4710074_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07710 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000004934 226.0
SHD1_k127_4710074_3 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000001475 85.0
SHD1_k127_4727771_0 Diguanylate cyclase, GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000007682 220.0
SHD1_k127_4727771_1 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.0000000000000000000000000000000000005386 145.0
SHD1_k127_4732345_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 6.583e-220 698.0
SHD1_k127_4732345_1 Proton-conducting membrane transporter K00342 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1902600,GO:1990204 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001941 605.0
SHD1_k127_4732345_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 449.0
SHD1_k127_4732345_3 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 423.0
SHD1_k127_4732345_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0030964,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000769 310.0
SHD1_k127_4732345_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone - - - 0.00000000000000000000000000000000000000000000000000000000000002056 216.0
SHD1_k127_4732345_6 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000000001304 190.0
SHD1_k127_4732345_7 Glycosyl transferases group 1 K21011 - - 0.00000000000000000000000000000000000000004492 168.0
SHD1_k127_4732345_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003086 137.0
SHD1_k127_4735696_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 490.0
SHD1_k127_4735696_1 Nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 357.0
SHD1_k127_4735696_2 Protein of unknown function (DUF1698) K15257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002068 368.0
SHD1_k127_4735696_3 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000007001 218.0
SHD1_k127_4743585_0 ATP-grasp domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000808 407.0
SHD1_k127_4743585_1 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000005028 233.0
SHD1_k127_4743585_2 Histidine triad (Hit) protein K02503 - - 0.000000000000000000000000000000000000003342 166.0
SHD1_k127_4743585_3 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000004332 154.0
SHD1_k127_4750638_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 433.0
SHD1_k127_4750638_1 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173 399.0
SHD1_k127_4750638_2 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 326.0
SHD1_k127_4750638_3 Amino acid amide ABC transporter ATP-binding protein 1, HAAT family K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007198 312.0
SHD1_k127_4750638_4 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000001541 237.0
SHD1_k127_4750638_5 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.0000000000000000000000000000000000000000000000000000417 192.0
SHD1_k127_4750638_6 UDP-N-acetylmuramyl pentapeptide phosphotransferase UDP-N-acetylglucosamine-1-phosphate transferase K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000007942 166.0
SHD1_k127_4756558_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 GO:0003674,GO:0003824,GO:0004749,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016772,GO:0016778,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006802 358.0
SHD1_k127_4756558_1 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000009821 183.0
SHD1_k127_4756558_10 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000006207 94.0
SHD1_k127_4756558_2 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000003605 158.0
SHD1_k127_4756558_3 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000001414 149.0
SHD1_k127_4756558_4 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005567 136.0
SHD1_k127_4756558_5 Single-strand binding protein family K03111 - - 0.00000000000000000000000000000002948 131.0
SHD1_k127_4756558_6 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919,K16924 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000271 121.0
SHD1_k127_4756558_7 SpoVG K06412 - - 0.000000000000000000000009985 104.0
SHD1_k127_4756558_8 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000003294 98.0
SHD1_k127_4756558_9 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000007599 94.0
SHD1_k127_4758470_0 ADP-glyceromanno-heptose 6-epimerase activity K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 316.0
SHD1_k127_4758470_1 Glycosyl transferase 4-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005402 289.0
SHD1_k127_4758470_2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000003358 193.0
SHD1_k127_4758470_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000008962 196.0
SHD1_k127_4794230_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000006121 175.0
SHD1_k127_4794230_1 hydrolase, HAD-superfamily, subfamily IIIA K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000004777 159.0
SHD1_k127_4794230_2 Tetratricopeptide repeat - - - 0.00003354 56.0
SHD1_k127_4799899_0 Peptidase family M23 - - - 0.00000000000000000000000000000000000000169 167.0
SHD1_k127_4799899_1 - - - - 0.00000000000000000000000000000000000003445 149.0
SHD1_k127_4799899_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000001539 126.0
SHD1_k127_4799899_3 PFAM Fibronectin, type III domain K01179,K06882 - 3.2.1.4 0.00000000003291 71.0
SHD1_k127_4799899_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000002467 64.0
SHD1_k127_4805588_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 7.826e-199 632.0
SHD1_k127_4805588_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000001043 158.0
SHD1_k127_4805588_2 Glucose-6-phosphate dehydrogenase subunit - - - 0.00000000000000000000000002307 127.0
SHD1_k127_4815340_0 TonB-dependent receptor K16092 - - 0.000000000000000000000000000000000000000000000000003756 200.0
SHD1_k127_4815340_1 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.000000000000000000000000000316 127.0
SHD1_k127_4815340_2 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0036211,GO:0040008,GO:0043085,GO:0043086,GO:0043170,GO:0043207,GO:0043388,GO:0043412,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0045893,GO:0045926,GO:0045935,GO:0046777,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.11.1 0.0000000000000003247 91.0
SHD1_k127_4832772_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 362.0
SHD1_k127_4832772_1 creatininase K01470 - 3.5.2.10 0.000000000000000000000000006688 122.0
SHD1_k127_4840039_0 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 294.0
SHD1_k127_4840039_1 PFAM Zinc carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008913 289.0
SHD1_k127_4840039_2 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000004603 233.0
SHD1_k127_4840039_3 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000005789 99.0
SHD1_k127_4840039_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000004652 59.0
SHD1_k127_4848365_0 NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 356.0
SHD1_k127_4848365_1 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000001179 167.0
SHD1_k127_4848365_2 Polysaccharide deacetylase - - - 0.000000000000000000000000000000209 133.0
SHD1_k127_4848365_3 PFAM Glycosyl transferase, group 1 K19424 - - 0.0000000006073 68.0
SHD1_k127_4859895_0 Natural resistance-associated macrophage protein K03322 - - 6.235e-195 618.0
SHD1_k127_4859895_1 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001107 349.0
SHD1_k127_4859895_2 Thioredoxin-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 316.0
SHD1_k127_4859895_3 metallopeptidase activity K06402 - - 0.000000000000000000000000000000000000000000000000000000000121 212.0
SHD1_k127_4859895_4 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000007778 182.0
SHD1_k127_4859895_5 Tetratricopeptide repeat - - - 0.000000001918 64.0
SHD1_k127_4860504_0 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 433.0
SHD1_k127_4860504_1 Galactokinase galactose-binding signature K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000001468 200.0
SHD1_k127_4863937_0 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively K06215 - 4.3.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001138 334.0
SHD1_k127_4863937_1 PFAM Alpha amylase, catalytic K01176 - 3.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000002601 242.0
SHD1_k127_4863937_2 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000000000000000007461 209.0
SHD1_k127_4863937_3 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.00000000000000000000000000000000000000000000000004059 192.0
SHD1_k127_4863957_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 323.0
SHD1_k127_4863957_1 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003755 282.0
SHD1_k127_4863957_2 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000000000000000000000000000000000000000000000001074 208.0
SHD1_k127_4863957_3 - - - - 0.000000000000000000000000000000000000000000000000000000006232 205.0
SHD1_k127_4863957_4 PFAM Biotin lipoate A B protein ligase family K03800 - 6.3.1.20 0.00000000000000000000000000000008456 132.0
SHD1_k127_4865901_0 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009117 301.0
SHD1_k127_4865901_1 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.00000000000000000000000000005855 132.0
SHD1_k127_4865901_2 Putative zinc-finger - - - 0.0001966 51.0
SHD1_k127_4865901_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0009522 42.0
SHD1_k127_4872495_0 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000004997 164.0
SHD1_k127_4872495_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000002604 115.0
SHD1_k127_4872495_2 - - - - 0.000000000000000000000003214 119.0
SHD1_k127_4876240_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006678 369.0
SHD1_k127_4876240_1 Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 349.0
SHD1_k127_4876240_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0070566,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.000000000000000000000000000000000000000000000002361 178.0
SHD1_k127_4876240_3 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000001244 143.0
SHD1_k127_4876240_4 Transcriptional regulator - - - 0.000000000000000000000000005609 117.0
SHD1_k127_4876240_5 Regulatory protein, FmdB family - - - 0.000000000000000000000004219 105.0
SHD1_k127_4876240_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.000000000001485 72.0
SHD1_k127_4876240_7 PBS lyase HEAT domain protein repeat-containing protein - - - 0.0008026 49.0
SHD1_k127_4889390_0 Prolyl oligopeptidase family - - - 1.926e-254 814.0
SHD1_k127_4894673_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 346.0
SHD1_k127_4894673_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000008484 214.0
SHD1_k127_4894673_2 Cytidine monophosphokinase K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.000000000000000000000000000000003357 132.0
SHD1_k127_4895885_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 556.0
SHD1_k127_4895885_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 512.0
SHD1_k127_4895885_2 ABC-type transport system involved in lipoprotein release permease component K02004,K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0089705,GO:0098796,GO:0098797,GO:1990778 - 0.000000000000000000000000000003286 124.0
SHD1_k127_4902502_0 PFAM sigma-54 factor interaction domain-containing protein K10943 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 298.0
SHD1_k127_4902502_1 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000002339 251.0
SHD1_k127_4902502_2 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000002961 111.0
SHD1_k127_4902502_3 Flagellar hook-basal body complex protein FliE K02408 - - 0.00000000000000001616 85.0
SHD1_k127_4923629_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003852 485.0
SHD1_k127_4923629_1 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 460.0
SHD1_k127_4923629_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 451.0
SHD1_k127_4923629_3 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000005448 267.0
SHD1_k127_4923629_4 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000002541 138.0
SHD1_k127_4923629_5 Preprotein translocase subunit SecG K03075 - - 0.0000002692 60.0
SHD1_k127_493199_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001109 495.0
SHD1_k127_493199_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000002373 151.0
SHD1_k127_493199_2 - - - - 0.000000000003545 81.0
SHD1_k127_4938387_0 Glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003388 428.0
SHD1_k127_4938387_1 Tricorn protease homolog K08676 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002469 358.0
SHD1_k127_4938387_2 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 388.0
SHD1_k127_4938387_3 PFAM NAD-dependent epimerase dehydratase K15856 - 1.1.1.281 0.00000000000000000000000000000000000000000000000000005448 198.0
SHD1_k127_4938387_4 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.00000000000000116 79.0
SHD1_k127_4943310_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0000000000000000000000000000000172 129.0
SHD1_k127_4943310_1 Domain of unknown function K20276 - - 0.00004817 55.0
SHD1_k127_4948705_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002701 517.0
SHD1_k127_4948705_1 Protein export membrane protein K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 356.0
SHD1_k127_4948705_2 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006684 263.0
SHD1_k127_4948705_3 pfam psp1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000006236 252.0
SHD1_k127_4948705_4 SecD/SecF GG Motif K03074 - - 0.00000000000000000000000000000000000000000000000000000000000000000004122 243.0
SHD1_k127_4948705_5 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000003517 218.0
SHD1_k127_4948705_6 'dna polymerase iii K02341 - 2.7.7.7 0.0000000000000000000000000000000001073 146.0
SHD1_k127_4948705_7 Divergent polysaccharide deacetylase K09798 - - 0.0000000000000000000000000001865 129.0
SHD1_k127_4948705_8 CarboxypepD_reg-like domain - - - 0.00000002276 66.0
SHD1_k127_4949939_0 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001552 416.0
SHD1_k127_4949939_1 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.000000000000000000000000000009358 137.0
SHD1_k127_4949939_2 Phosphotransferase System K11189 - - 0.0000000000000000000008324 100.0
SHD1_k127_4949939_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.0000000006843 67.0
SHD1_k127_4949939_4 PTS system sorbose-specific iic component K02746,K02795 - - 0.0001894 53.0
SHD1_k127_4964288_0 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 568.0
SHD1_k127_4964288_1 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007647 317.0
SHD1_k127_4964288_2 Cupin 2, conserved barrel - - - 0.000000000000000000000000000000000000000000000000002497 195.0
SHD1_k127_4964288_3 extracellular matrix structural constituent - - - 0.00000004317 66.0
SHD1_k127_4968095_0 Alpha-2-Macroglobulin K06894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002731 639.0
SHD1_k127_4980194_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.318e-205 646.0
SHD1_k127_4980194_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.00000000000000000000000000000000001481 137.0
SHD1_k127_4980194_2 5'-nucleotidase K01081,K01119 - 3.1.3.5,3.1.3.6,3.1.4.16 0.00000000000000000000004802 105.0
SHD1_k127_4980194_3 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000001116 96.0
SHD1_k127_4983130_0 NAD binding K00333,K13378 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 495.0
SHD1_k127_4983130_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000004902 215.0
SHD1_k127_4983130_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K03615,K05580 - 1.6.5.3 0.00000000000000001032 88.0
SHD1_k127_4983130_3 selT selW selH selenoprotein K07401 - - 0.0000000001802 63.0
SHD1_k127_4983130_4 Tetratricopeptide repeat - - - 0.0002146 51.0
SHD1_k127_4986252_0 Putative glucoamylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 563.0
SHD1_k127_4986252_1 ABC transporter substrate-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 462.0
SHD1_k127_4986252_2 Bacterial regulatory protein, Fis family K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 333.0
SHD1_k127_4986252_3 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000008929 217.0
SHD1_k127_4986252_4 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000002457 156.0
SHD1_k127_4986252_5 OsmC-like protein - - - 0.00000000000000000000000000000000001574 140.0
SHD1_k127_4986252_6 Sigma-54 factor interaction domain-containing protein K07713 - - 0.000000000000000000000153 100.0
SHD1_k127_4986252_7 helix_turn_helix, arabinose operon control protein K07506 - - 0.0000288 53.0
SHD1_k127_4987081_0 Amino acid permease family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009884 370.0
SHD1_k127_4987081_1 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 336.0
SHD1_k127_4987081_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000001034 186.0
SHD1_k127_4993721_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001174 283.0
SHD1_k127_4993721_1 PFAM 2Fe-2S -binding K03518,K07302,K13483 - 1.2.5.3,1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000002897 228.0
SHD1_k127_4993721_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000007357 185.0
SHD1_k127_4999665_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1285.0
SHD1_k127_4999665_1 Belongs to the ompA family - - - 0.0000000000002572 78.0
SHD1_k127_5012344_0 -O-antigen K18814 - - 0.00000000000000000000000002131 124.0
SHD1_k127_5012344_1 Glycosyltransferase like family 2 - - - 0.0000000000001231 80.0
SHD1_k127_5026531_0 peptidase activity, acting on L-amino acid peptides K09607 - - 0.00000000000000000000000000000000000000000000000000000000000000000006228 263.0
SHD1_k127_5026531_1 AAA domain - - - 0.000000000000000000000000000000000000000003105 161.0
SHD1_k127_5026531_2 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000000000000000006009 160.0
SHD1_k127_5026531_3 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000001041 137.0
SHD1_k127_5026531_4 Histidine kinase-like ATPase domain - - - 0.000004342 55.0
SHD1_k127_5026531_5 domain protein K20276 - - 0.0001356 53.0
SHD1_k127_5049192_0 Aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 1.119e-209 662.0
SHD1_k127_5049192_1 DNA-binding response regulator K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002397 398.0
SHD1_k127_5049192_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000115 286.0
SHD1_k127_5049192_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K16792 - 4.2.1.114 0.00000000000000000000000000000000000000000004211 176.0
SHD1_k127_5049192_4 Belongs to the peptidase S8 family K06113,K12685 - 3.2.1.99 0.00000000002876 75.0
SHD1_k127_5049192_5 aminopeptidase N - - - 0.00001338 58.0
SHD1_k127_5061340_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006866 546.0
SHD1_k127_5061340_1 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000999 467.0
SHD1_k127_5061340_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 414.0
SHD1_k127_5061340_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000003759 151.0
SHD1_k127_5061340_4 PFAM Protein-tyrosine phosphatase, low molecular weight K01104,K20201 - 3.1.3.48,3.9.1.2 0.0000000000000000000000000009915 120.0
SHD1_k127_5061340_5 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.00000000000000000000006271 108.0
SHD1_k127_5074231_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000008498 256.0
SHD1_k127_5074231_1 - - - - 0.0000000000000000000002103 110.0
SHD1_k127_5074231_2 zinc ion binding K11997 - - 0.000000001324 69.0
SHD1_k127_5074231_3 FG-GAP repeat protein - - - 0.000000281 63.0
SHD1_k127_5074231_4 - - - - 0.0000003136 62.0
SHD1_k127_5074829_0 TIGRFAM alpha-glucan - - - 0.0 1232.0
SHD1_k127_5074829_1 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 1.079e-217 681.0
SHD1_k127_5080547_0 DinB family - - - 0.0000000000000000000000000000000000000000000000004793 185.0
SHD1_k127_5080547_1 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000006507 141.0
SHD1_k127_5080547_2 Protein of unknown function, DUF393 - - - 0.00000000000000000000000000000004912 129.0
SHD1_k127_5080547_3 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K02584 - - 0.000000001226 70.0
SHD1_k127_5082461_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000946 586.0
SHD1_k127_5082461_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 430.0
SHD1_k127_5082461_2 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000109 249.0
SHD1_k127_5083195_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000008898 219.0
SHD1_k127_5083195_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000006706 203.0
SHD1_k127_5083195_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000002406 177.0
SHD1_k127_5083195_3 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.000001241 61.0
SHD1_k127_5084909_0 COG0006 Xaa-Pro aminopeptidase K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000009159 239.0
SHD1_k127_5084909_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000002735 224.0
SHD1_k127_5084909_2 TPM domain K06872 - - 0.000000000000000000000000000000000000000003362 164.0
SHD1_k127_5084909_3 TPM domain K08988 - - 0.000000000000000000000000000000000000199 149.0
SHD1_k127_5084909_4 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000007201 135.0
SHD1_k127_5084909_5 Redoxin K03564 - 1.11.1.15 0.000000000004482 76.0
SHD1_k127_5084909_6 Crossover junction endodeoxyribonuclease RuvC K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.0000001002 54.0
SHD1_k127_5097420_0 Glycosyl transferase family 21 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 443.0
SHD1_k127_5097420_1 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000166 288.0
SHD1_k127_5097420_2 Glycosyltransferase family 87 - - - 0.0000000000000000000000000000000000000005613 166.0
SHD1_k127_5097420_3 - - - - 0.00000000000000000007992 103.0
SHD1_k127_5097420_4 PKD domain K07282 - - 0.00000000000008805 86.0
SHD1_k127_5097420_5 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000001842 60.0
SHD1_k127_5097420_6 Exopolysaccharide biosynthesis protein YbjH - - - 0.000000002519 67.0
SHD1_k127_5108181_0 Protein of unknown function (DUF2723) - - - 0.0000000000000000000000000000000000000000008634 168.0
SHD1_k127_5108181_1 WD40 repeat-like protein - - - 0.0002177 51.0
SHD1_k127_5122584_0 translation release factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008144 357.0
SHD1_k127_5122584_1 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000007751 183.0
SHD1_k127_5122584_2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000000004404 85.0
SHD1_k127_5122584_3 Belongs to the arylamine N-acetyltransferase family K00675,K15466 - 2.3.1.118 0.00001578 56.0
SHD1_k127_5142641_0 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000002621 214.0
SHD1_k127_5142641_1 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000001072 192.0
SHD1_k127_5142937_0 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 307.0
SHD1_k127_5142937_1 (AIR) carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001212 257.0
SHD1_k127_5147258_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 405.0
SHD1_k127_5147258_1 Putative stress-induced transcription regulator - - - 0.000000000000000000000000000000008353 136.0
SHD1_k127_5162550_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 464.0
SHD1_k127_517407_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001446 411.0
SHD1_k127_517407_1 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 334.0
SHD1_k127_517407_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 314.0
SHD1_k127_517407_3 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000008569 104.0
SHD1_k127_517407_4 Putative ATP-binding cassette K01992 - - 0.0002394 53.0
SHD1_k127_5174325_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000001143 135.0
SHD1_k127_5175636_0 Lamin Tail Domain K07004 - - 0.000000000000000000000000000000000000000000000005186 191.0
SHD1_k127_5175636_1 photosystem II stabilization K02237 - - 0.0000000000000000000000000000000000001681 158.0
SHD1_k127_5175636_2 metallopeptidase activity - - - 0.0000000000000000000000000000000001465 150.0
SHD1_k127_5175636_3 Helix-hairpin-helix motif K02237 - - 0.000000285 60.0
SHD1_k127_5176292_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004743 303.0
SHD1_k127_5176292_1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000017 252.0
SHD1_k127_5176292_2 NADH dehydrogenase (ubiquinone) activity K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.0000000000000000000000000000000000000004098 160.0
SHD1_k127_5176292_3 PFAM pentapeptide repeat protein - - - 0.0000000000000000001003 102.0
SHD1_k127_5176292_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000727 57.0
SHD1_k127_5176372_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005686 280.0
SHD1_k127_5176372_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000002775 231.0
SHD1_k127_5176372_2 Carboxylesterase K06999 - - 0.00000000000000004171 91.0
SHD1_k127_5196532_0 purine nucleobase transmembrane transporter activity K06901 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 541.0
SHD1_k127_5196532_1 Vault protein inter-alpha-trypsin domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 433.0
SHD1_k127_5196532_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000402 203.0
SHD1_k127_5196532_3 mannose-1-phosphate guanylyltransferase activity K00971,K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000000000000000723 181.0
SHD1_k127_5196532_4 CHAT domain - - - 0.00000000000000000000000000003883 131.0
SHD1_k127_5196532_5 belongs to the sigma-70 factor family, ECF subfamily - - - 0.00000000000000000000000002024 116.0
SHD1_k127_5196532_6 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000569 94.0
SHD1_k127_5196532_7 MerR HTH family regulatory protein - - - 0.000000000000009259 81.0
SHD1_k127_5203830_0 Domain of unknown function (DUF3520) K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004793 452.0
SHD1_k127_5206011_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 346.0
SHD1_k127_5206011_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000009948 82.0
SHD1_k127_5206011_2 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000001359 77.0
SHD1_k127_5226237_0 ferredoxin-NADP+ reductase activity K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002883 372.0
SHD1_k127_5226237_1 Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000357 207.0
SHD1_k127_5226237_2 Methyltransferase type 11 - - - 0.0000008307 55.0
SHD1_k127_5232959_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 409.0
SHD1_k127_5232959_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 315.0
SHD1_k127_5232959_2 PFAM Methyltransferase type 11 - - - 0.000000000000000000000006853 111.0
SHD1_k127_5237944_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.0 1191.0
SHD1_k127_5237944_1 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1153.0
SHD1_k127_5237944_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 1.502e-214 672.0
SHD1_k127_5237944_3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 572.0
SHD1_k127_5237944_4 metallophosphoesterase K07096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003203 305.0
SHD1_k127_5237944_5 Domain of unknown function (DUF4440) - - - 0.00000000000002355 78.0
SHD1_k127_524623_0 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007514 563.0
SHD1_k127_524623_1 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000001429 166.0
SHD1_k127_524623_2 Polysaccharide lyase family 4, domain II - - - 0.00000000000000000000000000000000001749 144.0
SHD1_k127_524623_3 Polysulphide reductase, NrfD K00185 - - 0.000000000000004324 80.0
SHD1_k127_524623_4 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000001056 86.0
SHD1_k127_5257252_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 1.643e-241 769.0
SHD1_k127_5257252_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 408.0
SHD1_k127_5257252_2 Universal stress protein family - - - 0.0000000000000000001779 94.0
SHD1_k127_5257353_0 PFAM flagellin domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 291.0
SHD1_k127_5257353_1 Flagellar protein FlaF K06602 - - 0.0000000000000000000000000005277 117.0
SHD1_k127_5257353_2 PFAM flagellar FlbT family protein K06601 - - 0.00000000000000000000000007778 111.0
SHD1_k127_5257353_3 bacterial-type flagellum-dependent cell motility K02397 - - 0.0000000000000000001497 99.0
SHD1_k127_5257353_4 Belongs to the peptidase S8 family K01179 - 3.2.1.4 0.000000003993 67.0
SHD1_k127_5257353_5 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.0000001892 62.0
SHD1_k127_5257353_6 His Kinase A (phosphoacceptor) domain - - - 0.000004253 54.0
SHD1_k127_5263061_0 Peptidase dimerisation domain K01436 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004666 375.0
SHD1_k127_5263061_1 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001947 303.0
SHD1_k127_5274561_0 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007394 552.0
SHD1_k127_5274561_1 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000008768 241.0
SHD1_k127_529264_0 Glycosyl hydrolases family 43 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 332.0
SHD1_k127_529264_1 bacterial-type flagellum organization K02282,K04562 - - 0.0000000000000000000000000000000000000000000000000000000005572 213.0
SHD1_k127_529264_2 Belongs to the sigma-70 factor family K02405 - - 0.000000000000000000000000000000000000000000000000000000006013 208.0
SHD1_k127_529264_3 TIGRFAM Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000005133 177.0
SHD1_k127_529264_4 Cupredoxin-like domain - - - 0.000000000000000000000000638 114.0
SHD1_k127_529264_5 Heavy-metal-associated domain K17686 - 3.6.3.54 0.0000003789 51.0
SHD1_k127_529272_0 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 392.0
SHD1_k127_529272_1 converts alpha-aldose to the beta-anomer - - - 0.0000000000000000000000000000000000000000000000002077 195.0
SHD1_k127_529272_2 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.0000000000000000000000007167 105.0
SHD1_k127_5294255_0 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008059 576.0
SHD1_k127_5294255_1 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007628 477.0
SHD1_k127_5294255_2 spore germination K03605,K04656,K08315 - 3.4.23.51 0.00000000000001022 82.0
SHD1_k127_5304550_0 amine dehydrogenase activity - - - 2.988e-226 773.0
SHD1_k127_5304550_1 Belongs to the Fur family K03711 - - 0.00000000000000000000001191 106.0
SHD1_k127_5304550_2 - - - - 0.00000000000000003237 89.0
SHD1_k127_5304550_3 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01176 - 3.2.1.1 0.00002328 59.0
SHD1_k127_5330282_0 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 479.0
SHD1_k127_5330282_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 450.0
SHD1_k127_5330282_2 Transglycosylase K05366 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0008955,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042546,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000003108 247.0
SHD1_k127_5330282_3 PFAM CMP dCMP deaminase zinc-binding K01489 - 3.5.4.5 0.00000000000000004913 95.0
SHD1_k127_5340520_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002342 274.0
SHD1_k127_5341096_0 Surface antigen K07277 - - 0.000000000000000000000000000000000000000000001435 187.0
SHD1_k127_5341096_1 zinc metalloprotease K11749 - - 0.0000000000000000000000000000000000002599 151.0
SHD1_k127_5356887_0 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000267 287.0
SHD1_k127_5356887_1 DinB superfamily - - - 0.0000000000000000000000000000000007615 134.0
SHD1_k127_5356887_2 Pfam:Arch_ATPase K02450 - - 0.0000000000000000000000000000001644 126.0
SHD1_k127_5356887_3 Putative adhesin - - - 0.000000000452 72.0
SHD1_k127_5356887_4 SnoaL-like polyketide cyclase - - - 0.00001663 48.0
SHD1_k127_5381577_0 Alcohol dehydrogenase GroES-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004525 425.0
SHD1_k127_5381577_1 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009662 365.0
SHD1_k127_5381577_2 PFAM Ribonuclease BN-like family K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000419 318.0
SHD1_k127_5381577_3 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000002117 229.0
SHD1_k127_5381577_4 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000005652 215.0
SHD1_k127_5381577_5 polysaccharide catabolic process K19049 - 4.2.2.5 0.0007856 46.0
SHD1_k127_538246_0 TonB-dependent receptor - - - 5.733e-260 826.0
SHD1_k127_5384968_0 Catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate K00294 - 1.2.1.88 3.155e-221 700.0
SHD1_k127_5384968_1 COG0473 Isocitrate isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.0000000000000000000000000000000000000004077 152.0
SHD1_k127_5389332_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002372 445.0
SHD1_k127_5389332_1 Protein of unknown function (DUF971) - - - 0.00000000000000000003115 98.0
SHD1_k127_5389332_2 Belongs to the CinA family K03742 - 3.5.1.42 0.00000000000000007637 82.0
SHD1_k127_5389332_3 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000006321 57.0
SHD1_k127_5396221_0 Aerotolerance regulator N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001208 274.0
SHD1_k127_5422660_0 Peptidase inhibitor I9 K20754 - 3.4.21.111 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 406.0
SHD1_k127_5422660_1 - - - - 0.000000000000000000000000001095 114.0
SHD1_k127_5441890_0 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 427.0
SHD1_k127_5441890_1 PFAM asparagine synthase K06864 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008863 274.0
SHD1_k127_5441890_2 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000000000734 208.0
SHD1_k127_5441890_3 transcriptional regulator, Rrf2 family - - - 0.00000000000000000000000000000000001534 139.0
SHD1_k127_5441890_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000006075 99.0
SHD1_k127_5441890_5 Type I 3-dehydroquinase K13832 - 1.1.1.25,4.2.1.10 0.0000001939 61.0
SHD1_k127_5449386_0 peptide catabolic process - - - 0.000000000000000000000000000000000000000000000000000000000000000001804 249.0
SHD1_k127_5449386_1 Evidence 4 Homologs of previously reported genes of K09927 - - 0.000000000000000000000000000000000000000000000000000000004003 223.0
SHD1_k127_5449386_2 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000001383 179.0
SHD1_k127_5449386_3 PFAM Fibronectin type III domain - - - 0.000000000000000000000000000000000007981 150.0
SHD1_k127_5453780_0 MreB/Mbl protein K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 454.0
SHD1_k127_5453780_1 Penicillin-binding protein 2 K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001827 407.0
SHD1_k127_5453780_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 321.0
SHD1_k127_5453780_3 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000002018 125.0
SHD1_k127_5453780_4 shape-determining protein MreD K03571 - - 0.0000000003503 67.0
SHD1_k127_5453780_5 PFAM Rhomboid family - - - 0.00001101 56.0
SHD1_k127_5474535_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 1.339e-241 776.0
SHD1_k127_5474535_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 454.0
SHD1_k127_5474535_2 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 330.0
SHD1_k127_5474535_3 - - - - 0.0002472 53.0
SHD1_k127_5490171_0 Aspartyl protease - - - 0.0000000000000000000000000000000000000000002837 176.0
SHD1_k127_5490171_1 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.000000000000000000003494 99.0
SHD1_k127_5490171_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000005155 88.0
SHD1_k127_5490171_3 metalloendopeptidase activity K11749 - - 0.0001746 54.0
SHD1_k127_5494659_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 578.0
SHD1_k127_5494659_1 response regulator K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 430.0
SHD1_k127_5494659_11 - - - - 0.000009591 56.0
SHD1_k127_5494659_12 septum formation initiator K05589 - - 0.0002042 49.0
SHD1_k127_5494659_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 305.0
SHD1_k127_5494659_3 Histidine kinase K13598 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000006932 220.0
SHD1_k127_5494659_4 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000001408 162.0
SHD1_k127_5494659_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000007459 153.0
SHD1_k127_5494659_6 surface antigen - - - 0.00000000000000000000000004822 124.0
SHD1_k127_5494659_7 Type ii and iii secretion system protein - - - 0.00000000000003838 85.0
SHD1_k127_5494659_8 Evidence 5 No homology to any previously reported sequences - - - 0.000000000001715 79.0
SHD1_k127_5494659_9 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000003479 67.0
SHD1_k127_5498528_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000201 276.0
SHD1_k127_5498528_1 Ser Thr phosphatase family protein K03547 - - 0.00000000000000000000000000000000000000000000000000000000002662 224.0
SHD1_k127_5498528_2 AAA domain - - - 0.00000000000000000000000000000000000000000006501 183.0
SHD1_k127_5498528_3 proteolysis - - - 0.000006437 49.0
SHD1_k127_5498528_4 Psort location CytoplasmicMembrane, score K01992 - - 0.0001741 52.0
SHD1_k127_552109_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 461.0
SHD1_k127_552109_1 NB-ARC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003251 325.0
SHD1_k127_552109_2 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases - - - 0.0000000000000000000000000000000000000000000000000000000001001 209.0
SHD1_k127_552109_3 COG0694 Thioredoxin-like proteins and domains - - - 0.0000000000000000000000000006985 116.0
SHD1_k127_552109_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000001742 110.0
SHD1_k127_553933_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 337.0
SHD1_k127_553933_1 Beta-Casp domain K07576 - - 0.000000000000000000000000000000000000000000000000000000000000000000001078 257.0
SHD1_k127_553933_2 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000006318 228.0
SHD1_k127_553933_3 UDP-2,3-diacylglucosamine hydrolase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000005514 188.0
SHD1_k127_553933_4 TIGRFAM anti-anti-sigma factor - - - 0.000000001186 68.0
SHD1_k127_553933_5 periplasmic ligand-binding sensor domain - - - 0.0000179 53.0
SHD1_k127_554409_0 thymidylate synthase (FAD) activity K03465 - 2.1.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004412 345.0
SHD1_k127_554409_1 Domain of unknown function (DUF4382) - - - 0.00000004249 64.0
SHD1_k127_554409_2 PFAM Tetratricopeptide repeat - - - 0.0008284 51.0
SHD1_k127_56087_0 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000000000000005292 86.0
SHD1_k127_56087_1 PFAM glycoside hydrolase family 13 domain protein - - - 0.0000000000000005061 91.0
SHD1_k127_56087_2 - - - - 0.0000002994 62.0
SHD1_k127_563067_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 412.0
SHD1_k127_563067_2 polysaccharide catabolic process K01179,K01218 - 3.2.1.4,3.2.1.78 0.0000000000000009291 93.0
SHD1_k127_564153_0 protein conserved in bacteria K11900 - - 3.174e-238 745.0
SHD1_k127_564153_1 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.000000000000000000000000000000000000000000000000000000000676 205.0
SHD1_k127_564153_2 Type VI secretion protein ImpA K11910 - - 0.000000000000000000000000000000003253 141.0
SHD1_k127_572953_0 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000009784 247.0
SHD1_k127_572953_1 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000009743 179.0
SHD1_k127_572953_2 DinB superfamily - - - 0.00000000000000000524 90.0
SHD1_k127_57302_0 Tetratricopeptide repeat - - - 0.0000000000000000000000003026 119.0
SHD1_k127_57302_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K13735 GO:0005575,GO:0005623,GO:0007155,GO:0008150,GO:0009279,GO:0009405,GO:0009987,GO:0016020,GO:0019867,GO:0022610,GO:0030260,GO:0030312,GO:0030313,GO:0031589,GO:0031975,GO:0042710,GO:0043708,GO:0044403,GO:0044409,GO:0044419,GO:0044462,GO:0044464,GO:0044764,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0071944,GO:0090605 - 0.000002348 59.0
SHD1_k127_57302_2 Belongs to the peptidase S8 family - - - 0.00005191 55.0
SHD1_k127_580144_0 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 515.0
SHD1_k127_580144_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004628 314.0
SHD1_k127_580144_2 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003719 269.0
SHD1_k127_580144_3 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000005418 214.0
SHD1_k127_580144_4 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000000000000000000234 151.0
SHD1_k127_580144_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000001478 87.0
SHD1_k127_580144_6 Glutamine amidotransferase domain - - - 0.0000009395 59.0
SHD1_k127_582726_0 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 456.0
SHD1_k127_582726_1 Polysaccharide biosynthesis protein K01784,K08679 - 5.1.3.2,5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 349.0
SHD1_k127_582726_2 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 335.0
SHD1_k127_582726_3 Protein of unknown function (DUF2723) - - - 0.000000000000000000000000000000000000000000000000000000000000003983 234.0
SHD1_k127_582726_4 Nucleotidyl transferase K00966 - 2.7.7.13 0.000000000000000000000000000000004287 135.0
SHD1_k127_582762_0 lysine biosynthetic process via aminoadipic acid - - - 1.881e-215 699.0
SHD1_k127_582762_1 Aminotransferase class I and II K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000008414 162.0
SHD1_k127_582762_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000008892 109.0
SHD1_k127_582762_3 - - - - 0.00005877 55.0
SHD1_k127_592390_0 PFAM AIR synthase related protein K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 293.0
SHD1_k127_592390_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007551 278.0
SHD1_k127_592390_2 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000005392 102.0
SHD1_k127_592583_0 Sialate O-acetylesterase K05970 - 3.1.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 398.0
SHD1_k127_592583_1 membrane transporter protein K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 307.0
SHD1_k127_592583_2 Thioredoxin-like - - - 0.000000000000000000000000000000000000000000000000000000004738 220.0
SHD1_k127_592583_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000008341 123.0
SHD1_k127_592583_4 Endonuclease I - - - 0.0000000000002529 74.0
SHD1_k127_604261_0 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.0000000000000000000000000000000000000000000003095 179.0
SHD1_k127_604261_1 methyltransferase - - - 0.00000000000002592 76.0
SHD1_k127_604261_2 Tellurite resistance protein TerB - - - 0.00000000000004768 84.0
SHD1_k127_604261_3 PFAM Oligosaccharyl transferase STT3 subunit K07151 - 2.4.99.18 0.0009664 49.0
SHD1_k127_626828_0 Aconitase C-terminal domain - - - 1.308e-289 912.0
SHD1_k127_630259_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 550.0
SHD1_k127_630259_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 403.0
SHD1_k127_630259_2 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K00627,K01571,K02160 - 2.3.1.12,4.1.1.3 0.000000000000000000000000000000000000000306 153.0
SHD1_k127_64883_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008066 491.0
SHD1_k127_64883_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001626 328.0
SHD1_k127_657322_0 Exodeoxyribonuclease III - - - 0.000000000000000000000000000000000000000000000005353 194.0
SHD1_k127_657322_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000006099 89.0
SHD1_k127_665520_0 KaiC K04485 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009054 427.0
SHD1_k127_665520_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000002363 248.0
SHD1_k127_665520_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000005141 235.0
SHD1_k127_665520_3 PFAM MscS Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000001103 240.0
SHD1_k127_665520_4 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.00000000000000000000000000000000000000000000000002464 191.0
SHD1_k127_665520_5 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 GO:0003674,GO:0003824,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008685,GO:0009058,GO:0009987,GO:0016114,GO:0016829,GO:0016849,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0051483,GO:0071704,GO:1901576 2.7.7.60,4.6.1.12 0.000000000000000000000000000000002783 138.0
SHD1_k127_708219_0 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 474.0
SHD1_k127_708219_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000002407 240.0
SHD1_k127_708219_2 amino acid activation for nonribosomal peptide biosynthetic process K06045 - 4.2.1.129,5.4.99.17 0.000000000000000000006727 106.0
SHD1_k127_708219_3 Outer membrane efflux protein K15725 - - 0.0000000000001162 82.0
SHD1_k127_731602_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 4.328e-198 642.0
SHD1_k127_731602_1 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000825 367.0
SHD1_k127_731602_2 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007892 367.0
SHD1_k127_731602_3 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.00000000000000001518 83.0
SHD1_k127_731602_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000001639 85.0
SHD1_k127_731602_5 antibiotic catabolic process - - - 0.00001235 57.0
SHD1_k127_738597_0 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002093 274.0
SHD1_k127_738597_1 SWI complex, BAF60b domains - - - 0.000000000000000000000000000000006268 132.0
SHD1_k127_738597_2 Methyltransferase domain - - - 0.000000000000000000523 94.0
SHD1_k127_744847_0 S-layer homology domain - - - 0.00000008638 64.0
SHD1_k127_744847_1 - - - - 0.0000008108 58.0
SHD1_k127_744847_2 Protein of unknown function (DUF2752) - - - 0.00003359 51.0
SHD1_k127_744847_3 Thiopurine S-methyltransferase (TPMT) - - - 0.0001414 46.0
SHD1_k127_765625_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000005676 218.0
SHD1_k127_765625_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 GO:0000166,GO:0003674,GO:0005488,GO:0008150,GO:0036094,GO:0040007,GO:0043167,GO:0043168,GO:0048037,GO:0050661,GO:0050662,GO:0070401,GO:0097159,GO:1901265,GO:1901363 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000003884 228.0
SHD1_k127_765625_2 Regulates arginine biosynthesis genes K03402 - - 0.00000000000000000000006836 109.0
SHD1_k127_765625_3 Amino acid kinase family K00930 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0031976,GO:0031984,GO:0034618,GO:0036094,GO:0042450,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.2.8 0.000000000000000003107 93.0
SHD1_k127_769170_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008043 580.0
SHD1_k127_769170_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 461.0
SHD1_k127_769170_2 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 391.0
SHD1_k127_769170_3 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007653 269.0
SHD1_k127_769170_4 HI0933-like protein K07007 - - 0.00000000000000000000000000000000000000002689 161.0
SHD1_k127_776698_0 Peptidase M3A and M3B thimet oligopeptidase F - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 486.0
SHD1_k127_776698_1 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 430.0
SHD1_k127_776698_2 SMART Nucleotide binding protein, PINc K07175 - - 0.0000000000000000000000000000000000000000000000000000000000000000007238 246.0
SHD1_k127_782670_0 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000006399 257.0
SHD1_k127_782670_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000001681 196.0
SHD1_k127_782670_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000003107 128.0
SHD1_k127_782670_3 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000004367 87.0
SHD1_k127_782670_4 Belongs to the UPF0102 family K07460 - - 0.0000000009168 66.0
SHD1_k127_789756_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000535 331.0
SHD1_k127_789756_1 TIGR00255 family - - - 0.0000000000000000000000000000000000000000000000000000000000006721 230.0
SHD1_k127_789756_2 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000002294 174.0
SHD1_k127_789756_3 Fibronectin-binding protein A N-terminus (FbpA) K12341 - - 0.00007003 55.0
SHD1_k127_791020_0 GDP-mannose 4,6 dehydratase K17947 - 5.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 510.0
SHD1_k127_791020_1 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 386.0
SHD1_k127_791020_2 oxidoreductase - - - 0.0000001892 52.0
SHD1_k127_795967_0 ABC transporter K02021,K06147,K06148,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 464.0
SHD1_k127_795967_1 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000152 413.0
SHD1_k127_795967_2 PFAM glycosyl transferase family 9 K02843,K02849 - - 0.00000000000000000000000000000003419 141.0
SHD1_k127_795967_3 Glycosyltransferase like family 2 - - - 0.00000000000000000000002562 115.0
SHD1_k127_797324_0 OsmC-like protein K04063 - - 0.00000000000000000000000000000000000000000000000000000004264 200.0
SHD1_k127_797324_1 PrcB C-terminal - - - 0.0000179 55.0
SHD1_k127_806359_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.0 1012.0
SHD1_k127_806359_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004429 435.0
SHD1_k127_806359_10 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000002602 65.0
SHD1_k127_806359_2 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 411.0
SHD1_k127_806359_3 Catalyzes the specific phosphorylation of arginine residues in proteins K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 340.0
SHD1_k127_806359_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 311.0
SHD1_k127_806359_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 297.0
SHD1_k127_806359_6 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004125 248.0
SHD1_k127_806359_7 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000000000000000003639 136.0
SHD1_k127_806359_8 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.000000000000000000000004219 105.0
SHD1_k127_806359_9 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000004033 113.0
SHD1_k127_806900_0 PFAM peptidase M20 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008701 415.0
SHD1_k127_806900_1 prohibitin homologues - GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007443 269.0
SHD1_k127_806900_2 NfeD-like C-terminal, partner-binding K07403 - - 0.0000002997 55.0
SHD1_k127_806900_3 Two component regulator propeller - - - 0.0003194 52.0
SHD1_k127_812460_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 310.0
SHD1_k127_812460_1 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.0000000000000000000000000000000000000000000000000000000000000000001094 239.0
SHD1_k127_812460_2 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000005462 212.0
SHD1_k127_812460_3 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000001676 101.0
SHD1_k127_812460_4 Cupin domain - - - 0.00000000000000004268 91.0
SHD1_k127_823470_0 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002416 380.0
SHD1_k127_823470_1 Domain of unknown function (DUF4150) - - - 0.000000000000000000000000000000001238 138.0
SHD1_k127_823470_2 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000008093 115.0
SHD1_k127_823470_4 Pentapeptide repeats (9 copies) - - - 0.00000000002394 77.0
SHD1_k127_831122_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005001 390.0
SHD1_k127_831122_1 COG0526 Thiol-disulfide isomerase and thioredoxins - - - 0.0000000000000000000000000000000000005429 156.0
SHD1_k127_831122_2 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000002875 71.0
SHD1_k127_839121_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 2.519e-269 844.0
SHD1_k127_839121_1 TatD related DNase K03424 - - 0.00000000000000000000000424 112.0
SHD1_k127_843927_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 347.0
SHD1_k127_843927_1 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.000000000000000000000000000000000000005886 156.0
SHD1_k127_843927_2 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.000000000000000000000000000000000003925 142.0
SHD1_k127_843927_3 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000009255 122.0
SHD1_k127_843927_4 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000009285 106.0
SHD1_k127_846226_0 COG0534 Na -driven multidrug efflux pump K03327 - - 0.000000000000000000000000000003194 123.0
SHD1_k127_846226_1 Por secretion system C-terminal sorting domain-containing protein - - - 0.00000000008336 74.0
SHD1_k127_84652_0 TIGRFAM methylmalonyl-CoA mutase N-terminal domain K01848 - 5.4.99.2 1.081e-236 748.0
SHD1_k127_84652_1 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002422 316.0
SHD1_k127_84652_2 Coenzyme A transferase K01029,K01035 - 2.8.3.5,2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
SHD1_k127_84652_3 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001741 273.0
SHD1_k127_84652_4 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000887 209.0
SHD1_k127_850210_0 Helix-hairpin-helix motif K02237 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 426.0
SHD1_k127_850210_1 Belongs to the 5'-nucleotidase family K01081,K11751,K17224 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 402.0
SHD1_k127_850210_2 long-chain fatty acid transport protein K06076 - - 0.00000003744 66.0
SHD1_k127_853993_0 PFAM Type II secretion system protein E K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008728 316.0
SHD1_k127_853993_1 Bacterial type II/III secretion system short domain K02453 - - 0.000000000000000000000000000000000000000003073 165.0
SHD1_k127_862004_0 Fumarylacetoacetate (FAA) hydrolase family K16165 - 3.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000001256 243.0
SHD1_k127_862004_1 PFAM Rhomboid family protein - - - 0.00000000000000000000000000000000000000000000000000000001007 203.0
SHD1_k127_862004_2 IrrE N-terminal-like domain - - - 0.00002448 56.0
SHD1_k127_870086_0 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001544 522.0
SHD1_k127_870086_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005257 325.0
SHD1_k127_870086_2 electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 312.0
SHD1_k127_870086_3 Metal dependent phosphohydrolases with conserved 'HD' motif. K03698 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001032 262.0
SHD1_k127_870086_4 Electron transfer flavoprotein domain K03521 - - 0.000000000000000000000000000000000000000000000000000000000000001403 227.0
SHD1_k127_870086_5 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000009557 225.0
SHD1_k127_870086_6 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000398 171.0
SHD1_k127_870086_7 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.000002613 56.0
SHD1_k127_875028_0 COG0457 FOG TPR repeat - - - 0.000000002013 69.0
SHD1_k127_875028_1 Calcineurin-like phosphoesterase K07098 - - 0.00003934 46.0
SHD1_k127_886994_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002607 496.0
SHD1_k127_887496_0 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008255 263.0
SHD1_k127_889140_0 Subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002586 268.0
SHD1_k127_889140_1 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000003061 129.0
SHD1_k127_889140_2 Endonuclease Exonuclease Phosphatase - - - 0.000000000005072 79.0
SHD1_k127_889140_3 Evidence 5 No homology to any previously reported sequences K09607 - - 0.0000000001423 74.0
SHD1_k127_893435_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000841 355.0
SHD1_k127_893435_1 WD40 domain protein beta Propeller K08884,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000001661 224.0
SHD1_k127_893435_2 O-methyltransferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000002912 192.0
SHD1_k127_896928_0 deaminated base DNA N-glycosylase activity K21929 GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003126 283.0
SHD1_k127_896928_1 TfoX N-terminal domain - - - 0.0004302 48.0
SHD1_k127_909106_0 PFAM helicase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 494.0
SHD1_k127_909106_1 tyrosine recombinase K03733,K04763 GO:0008150,GO:0040007 - 0.000000000000000000000000000000000000000000000000005974 185.0
SHD1_k127_909106_2 - - - - 0.00000005062 64.0
SHD1_k127_911533_0 PFAM Peptidase M16 inactive domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009965 308.0
SHD1_k127_911533_2 - - - - 0.00000000000000000000000000000001069 141.0
SHD1_k127_92392_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 0.00000000000000000000000000000000000000000003447 167.0
SHD1_k127_92392_1 MgtC family K07507 - - 0.000000000000000000000000000000007247 133.0
SHD1_k127_92392_2 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.000000000000000000002802 98.0
SHD1_k127_92392_3 - - - - 0.0000004322 59.0
SHD1_k127_927640_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.95e-244 786.0
SHD1_k127_927640_1 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 622.0
SHD1_k127_927640_10 repeat protein - - - 0.000000000846 72.0
SHD1_k127_927640_11 Galactose oxidase, central domain - - - 0.0003164 53.0
SHD1_k127_927640_2 TIGRFAM hydrogenase expression formation protein HypD K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007094 507.0
SHD1_k127_927640_3 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K16950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 455.0
SHD1_k127_927640_4 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 401.0
SHD1_k127_927640_5 coenzyme F420 hydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000636 378.0
SHD1_k127_927640_6 2 iron, 2 sulfur cluster binding K02823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007177 334.0
SHD1_k127_927640_7 Domains REC, PAS, PAS, PP2C K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000004304 250.0
SHD1_k127_927640_8 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000000000000000000006077 177.0
SHD1_k127_927640_9 carbon dioxide binding K04653 - - 0.0000000000000000000001381 99.0
SHD1_k127_947966_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 393.0
SHD1_k127_947966_1 PFAM Mo-co oxidoreductase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 349.0
SHD1_k127_947966_2 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004347 305.0
SHD1_k127_947966_3 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008061 299.0
SHD1_k127_948454_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 401.0
SHD1_k127_948454_1 SERine Proteinase INhibitors K13963 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009454 325.0
SHD1_k127_972301_0 FAD binding domain K00103,K00279 - 1.1.3.8,1.5.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 351.0
SHD1_k127_972301_1 Penicillin amidase K01434 - 3.5.1.11 0.000000005478 61.0
SHD1_k127_972301_2 Oxidoreductase FAD-binding domain K00523,K00529,K02639,K16246,K18225 - 1.17.1.1,1.18.1.3 0.0001428 50.0