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Overview

ID MAG03390
Name SHD3_bin.16
Sample SMP0084
Taxonomy
Kingdom Bacteria
Phylum Eisenbacteria
Class RBG-16-71-46
Order JABDJR01
Family JAWXBZ01
Genus
Species
Assembly information
Completeness (%) 85.29
Contamination (%) 1.66
GC content (%) 67.0
N50 (bp) 5,537
Genome size (bp) 3,656,215

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3039

Gene name Description KEGG GOs EC E-value Score Sequence
SHD3_k127_1008585_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 8.582e-311 970.0
SHD3_k127_1008585_1 Doubled CXXCH motif (Paired_CXXCH_1) - - - 4.741e-195 646.0
SHD3_k127_1008585_10 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000004429 102.0
SHD3_k127_1008585_11 transcriptional regulator K01420,K10914 - - 0.00000000000004861 81.0
SHD3_k127_1008585_2 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006655 619.0
SHD3_k127_1008585_3 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 430.0
SHD3_k127_1008585_4 His Kinase A (phosphoacceptor) domain K00694,K03406,K07315,K14986 - 2.4.1.12,2.7.13.3,3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 408.0
SHD3_k127_1008585_5 iron ion homeostasis K03709,K04758 - - 0.00000000000000000000000000000000000000000002917 173.0
SHD3_k127_1008585_6 Di-iron-containing protein involved in the repair of iron-sulfur clusters - - - 0.00000000000000000000000000000005243 141.0
SHD3_k127_1008585_7 Transcriptional regulator - - - 0.000000000000000000000001064 109.0
SHD3_k127_1008585_8 PFAM response regulator receiver - - - 0.000000000000000000000001234 109.0
SHD3_k127_1008585_9 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000003347 109.0
SHD3_k127_1019359_0 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003233 511.0
SHD3_k127_1019359_1 PolyA polymerase K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007994 286.0
SHD3_k127_1019359_2 Histidine kinase K14986 - 2.7.13.3 0.0000000000000000000000000000000000000000000001504 186.0
SHD3_k127_1029316_0 PhoQ Sensor - - - 0.0000000000000000000000000001582 128.0
SHD3_k127_1029316_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000001176 114.0
SHD3_k127_1037631_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006213 368.0
SHD3_k127_1037631_1 Lysophospholipase - - - 0.0000000000000000000000000000000000000000000000000000001421 207.0
SHD3_k127_1037631_2 OprF membrane domain K03286 - - 0.0000000008418 67.0
SHD3_k127_1044738_0 PFAM NHL repeat containing protein - - - 0.00000000000000000000000000000000000000000000000003471 193.0
SHD3_k127_1044738_1 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000002333 122.0
SHD3_k127_1044738_2 Lipopolysaccharide-assembly - - - 0.00000000009859 69.0
SHD3_k127_105297_0 isomerase activity K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000009517 258.0
SHD3_k127_105297_1 enzyme related to lactoylglutathione lyase K06996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005631 245.0
SHD3_k127_1064191_0 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.000000000000000000000000000000000000000000000002604 180.0
SHD3_k127_1064191_1 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.00000000000000000001049 104.0
SHD3_k127_1065968_0 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002716 367.0
SHD3_k127_1065968_1 lysine biosynthetic process via aminoadipic acid - - - 0.0000000000000000000000000000000000000000000000003678 183.0
SHD3_k127_1065968_2 Bacterial transcriptional activator domain - - - 0.0000000000004745 80.0
SHD3_k127_1066401_0 Cytochrome c K00413 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001013 316.0
SHD3_k127_10724_0 endonuclease activity K07451 - - 0.0000000000000000000000000000000000000000000000000001632 205.0
SHD3_k127_10724_1 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM K03519,K13479 - 1.17.1.4,1.2.5.3 0.000002566 51.0
SHD3_k127_1079379_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001369 304.0
SHD3_k127_1079379_1 HD domain - - - 0.0000000000000000000000000000000000000000000000000001042 201.0
SHD3_k127_1079379_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.000000000000000000000000000138 116.0
SHD3_k127_1083751_0 Belongs to the carbamoyltransferase HypF family K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 485.0
SHD3_k127_1083751_1 carbon dioxide binding K04653 - - 0.00000000000000000000006743 100.0
SHD3_k127_1086451_1 TonB-dependent receptor - - - 1.031e-260 831.0
SHD3_k127_1086451_2 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008954 447.0
SHD3_k127_1086451_3 long-chain fatty acid transporting porin activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005654 304.0
SHD3_k127_1086451_4 cellulose binding K00505 - 1.14.18.1 0.00000000000000000000000000000000000000000000000000001745 200.0
SHD3_k127_1086451_5 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.00000000126 71.0
SHD3_k127_1089742_0 ABC-type dipeptide transport system periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 515.0
SHD3_k127_1089742_1 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 297.0
SHD3_k127_1089742_2 PFAM ROK family protein - - - 0.00007437 47.0
SHD3_k127_1090920_0 ABC transporter, transmembrane K11085 - - 1.764e-261 818.0
SHD3_k127_1090920_1 Berberine and berberine like - - - 7.245e-199 637.0
SHD3_k127_1090920_2 Peptidase S9, prolyl oligopeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 444.0
SHD3_k127_109982_0 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005092 368.0
SHD3_k127_109982_1 ParB-like nuclease domain K03497 - - 0.000000000000000000000000000000000000000000000000000002258 198.0
SHD3_k127_109982_2 NUDIX domain - - - 0.0000000000000000000000000000000000000004458 156.0
SHD3_k127_1108379_0 COG0534 Na -driven multidrug efflux pump K03327 - - 0.0000000000000000000000000000000000000000000000000000000000000515 220.0
SHD3_k127_1108379_1 Por secretion system C-terminal sorting domain-containing protein - - - 0.00000000006266 74.0
SHD3_k127_1120111_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 8.608e-217 684.0
SHD3_k127_1120111_1 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 455.0
SHD3_k127_1120111_2 PFAM peptidase M14 carboxypeptidase A - - - 0.00000000000000000000000000000005447 142.0
SHD3_k127_1120111_3 DoxX K15977 - - 0.000000000000000000000000271 111.0
SHD3_k127_1135318_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000008194 265.0
SHD3_k127_1135318_1 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000000000009558 133.0
SHD3_k127_1142717_0 endonuclease activity K07451 - - 0.00000000000000000000000000000000000000000002107 178.0
SHD3_k127_1142717_1 Tetratricopeptide repeat - - - 0.000001754 58.0
SHD3_k127_1143386_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003409 369.0
SHD3_k127_1143386_1 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.0000000000000000000003744 102.0
SHD3_k127_1143386_2 - - - - 0.000000000000000000001357 102.0
SHD3_k127_1143386_3 Recombinase zinc beta ribbon domain K06400 - - 0.0000001717 58.0
SHD3_k127_1143386_4 Recombinase zinc beta ribbon domain - - - 0.000000548 58.0
SHD3_k127_1146160_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 603.0
SHD3_k127_1146160_1 Insulinase (Peptidase family M16) K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002718 412.0
SHD3_k127_1146160_2 PFAM peptidase M16 domain protein - - - 0.0000000000000000000000000000000000000000000000000004123 200.0
SHD3_k127_1146160_3 Surface antigen - - - 0.000000000000000000000000001058 125.0
SHD3_k127_1146160_4 FtsZ-dependent cytokinesis - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000008976 90.0
SHD3_k127_1146656_0 PBP superfamily domain K02040 - - 0.000000000001782 78.0
SHD3_k127_1146656_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000003288 57.0
SHD3_k127_1159538_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431 - 3.5.1.6 0.0000000000000000000000000000000000000000000000000000000000008858 220.0
SHD3_k127_1159538_1 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000008943 167.0
SHD3_k127_1159538_2 PspC domain K03973 - - 0.00000000001355 68.0
SHD3_k127_1163895_0 Peptidase family M1 domain K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 523.0
SHD3_k127_1163895_1 (ABC) transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 414.0
SHD3_k127_1163895_2 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007292 364.0
SHD3_k127_1163895_3 Enoyl-(Acyl carrier protein) reductase K03793 - 1.5.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000003626 251.0
SHD3_k127_1163895_4 photosystem I assembly BtpA K06971 - - 0.00000000000000000000000000000000000000000000000000000000000000000002272 251.0
SHD3_k127_1168320_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 438.0
SHD3_k127_1168320_1 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 331.0
SHD3_k127_1168320_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.00000000000000000003978 98.0
SHD3_k127_1168320_3 Ribosomal protein S21 K02970 - - 0.0000000000000003726 79.0
SHD3_k127_1188147_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 4.6e-268 843.0
SHD3_k127_1188147_1 class I DNA-(apurinic or apyrimidinic site) endonuclease activity K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005574 341.0
SHD3_k127_1188147_2 MgtC family K07507 - - 0.00000000000000000000005409 101.0
SHD3_k127_1188147_3 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity K03429 - 2.4.1.315 0.000000000000000000002802 98.0
SHD3_k127_1188147_4 PFAM TPR repeat-containing protein - - - 0.0000000000006606 83.0
SHD3_k127_1188147_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0008021 51.0
SHD3_k127_124761_0 Repeat of Unknown Function (DUF347) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003164 355.0
SHD3_k127_124761_1 RNA polymerase sigma factor - - - 0.00000000000000000000000000000000000000000000000000000000000001339 220.0
SHD3_k127_124761_2 - - - - 0.00000000000000001761 85.0
SHD3_k127_124761_4 - - - - 0.0000000007088 70.0
SHD3_k127_1253923_0 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003854 344.0
SHD3_k127_1253923_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000002145 265.0
SHD3_k127_1253923_2 Polysaccharide lyase family 4, domain II - - - 0.00000000000000000000000000000000000000000000000000000000000000000402 232.0
SHD3_k127_1253923_3 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000002568 227.0
SHD3_k127_1253923_4 Cytochrome oxidase assembly protein K02259,K03110 - - 0.00000000000000000000000000000000000005832 158.0
SHD3_k127_1253923_5 SCO1/SenC K07152,K08976 - - 0.00000000000000000000000000000001533 144.0
SHD3_k127_1293185_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1041.0
SHD3_k127_1293185_1 endonuclease activity K07451 - - 0.0000000000000008563 91.0
SHD3_k127_1306313_0 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000003075 115.0
SHD3_k127_1306313_1 protein-disulfide reductase activity - - - 0.0000000002873 68.0
SHD3_k127_1306313_2 Amidase K01426 - 3.5.1.4 0.0002582 46.0
SHD3_k127_1308551_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 489.0
SHD3_k127_1308551_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004163 327.0
SHD3_k127_1308551_2 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000005989 223.0
SHD3_k127_1308551_3 amino acid activation for nonribosomal peptide biosynthetic process K06045 - 4.2.1.129,5.4.99.17 0.00000000000002153 86.0
SHD3_k127_1308551_4 exo-alpha-(2->6)-sialidase activity - - - 0.0001329 57.0
SHD3_k127_1332693_0 Natural resistance-associated macrophage protein K03322 - - 2.428e-195 619.0
SHD3_k127_1332693_1 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000006725 238.0
SHD3_k127_1332693_2 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000001769 186.0
SHD3_k127_1332693_3 Tetratricopeptide repeat - - - 0.000000001918 64.0
SHD3_k127_1334976_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 485.0
SHD3_k127_133983_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 508.0
SHD3_k127_1341208_0 Endonuclease Exonuclease Phosphatase - - - 0.000000000000000000001073 100.0
SHD3_k127_1341208_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides - - - 0.000000000000000000004913 109.0
SHD3_k127_1356338_0 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000001216 237.0
SHD3_k127_1356338_1 Phosphoribulokinase / Uridine kinase family K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.000000000000000000000282 98.0
SHD3_k127_1363327_0 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 323.0
SHD3_k127_1363327_1 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003755 282.0
SHD3_k127_1363327_2 Evidence 5 No homology to any previously reported sequences - - - 0.0000000000000000000000000000000000000000000000000000000003058 210.0
SHD3_k127_1363327_3 - - - - 0.000000000000000000000000000000000000000000000000000000006232 205.0
SHD3_k127_1363327_4 Octanoyltransferase K03800 GO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016415,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 6.3.1.20 0.000000000000000003509 87.0
SHD3_k127_1371108_0 DNA ligase N terminus K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000004104 180.0
SHD3_k127_1371108_1 cell adhesion involved in biofilm formation K13735,K20276 - - 0.000000000000000000000001487 120.0
SHD3_k127_1371108_2 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.00000000000000001663 95.0
SHD3_k127_1371108_3 Belongs to the glycosyl hydrolase 43 family K01278,K03561,K12287 - 3.4.14.5 0.00000000000006144 84.0
SHD3_k127_140796_0 alpha/beta hydrolase fold K01259 - 3.4.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001939 276.0
SHD3_k127_140796_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000009524 96.0
SHD3_k127_140796_2 Arabinose-binding domain of AraC transcription regulator, N-term - - - 0.000000006864 63.0
SHD3_k127_14138_0 Ftsk_gamma K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 504.0
SHD3_k127_14138_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0051179,GO:0051234,GO:0071702 2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000108 490.0
SHD3_k127_14138_10 Phosphotransferase System K11189 - - 0.0000000000000000000008324 100.0
SHD3_k127_14138_11 outer membrane assembly lipoprotein YfiO K05807 - - 0.000000000003495 76.0
SHD3_k127_14138_12 PTS system sorbose-specific iic component K02746,K02795 - - 0.0001894 53.0
SHD3_k127_14138_2 DNA polymerase A domain K02335 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 494.0
SHD3_k127_14138_3 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 472.0
SHD3_k127_14138_4 Catalyzes the formation of S-adenosylmethionine from methionine and ATP K00789 GO:0000096,GO:0000098,GO:0000166,GO:0000287,GO:0001887,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006556,GO:0006732,GO:0006790,GO:0006807,GO:0007275,GO:0007568,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009087,GO:0009108,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010883,GO:0010888,GO:0014070,GO:0014074,GO:0016043,GO:0016054,GO:0016363,GO:0016597,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0022607,GO:0030554,GO:0031406,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0034097,GO:0034214,GO:0034399,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046500,GO:0046683,GO:0046872,GO:0046983,GO:0048269,GO:0048511,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051291,GO:0051591,GO:0051716,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0098601,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1902494,GO:1905952,GO:1905953,GO:1990234,GO:1990823,GO:1990830 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 408.0
SHD3_k127_14138_5 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 379.0
SHD3_k127_14138_6 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 369.0
SHD3_k127_14138_7 TIGRFAM bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000000000000000000000000000000009706 198.0
SHD3_k127_14138_8 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000003373 164.0
SHD3_k127_14138_9 PFAM PTS system mannose fructose sorbose family IID component K02796 - - 0.000000000000000000000000000009358 137.0
SHD3_k127_141965_0 MgtC family K07507 - - 0.0000000000000009649 81.0
SHD3_k127_141965_1 NlpC/P60 family K13695 - - 0.0000000004976 68.0
SHD3_k127_141965_2 - - - - 0.0000004322 59.0
SHD3_k127_141965_3 Domain of Unknown Function (DUF350) K08989 - - 0.0000008475 53.0
SHD3_k127_141965_4 STAS domain K04749 - - 0.000005802 53.0
SHD3_k127_1427990_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 5.601e-212 666.0
SHD3_k127_1427990_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 394.0
SHD3_k127_1427990_2 PFAM Tetratricopeptide repeat - - - 0.0002518 51.0
SHD3_k127_1431145_0 ATPase associated with various cellular K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 362.0
SHD3_k127_1431145_1 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 353.0
SHD3_k127_1431145_2 von Willebrand factor (vWF) type A domain K07114,K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 329.0
SHD3_k127_1431145_3 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009897 293.0
SHD3_k127_1431145_4 Psort location CytoplasmicMembrane, score - - - 0.0000000000000172 87.0
SHD3_k127_1431145_5 Tetratricopeptide repeat - - - 0.00002038 50.0
SHD3_k127_1434919_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 541.0
SHD3_k127_1434919_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001205 399.0
SHD3_k127_1434919_10 - - - - 0.000000000000000000000000005474 111.0
SHD3_k127_1434919_11 HAD-hyrolase-like K07025 - - 0.0000000000000000000000001811 116.0
SHD3_k127_1434919_12 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000002451 94.0
SHD3_k127_1434919_13 Type IV pilus biogenesis stability protein PilW - - - 0.0000783 55.0
SHD3_k127_1434919_2 Protein export membrane protein K03072 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 356.0
SHD3_k127_1434919_3 Peptidase dimerisation domain K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 346.0
SHD3_k127_1434919_4 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002317 344.0
SHD3_k127_1434919_5 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003172 325.0
SHD3_k127_1434919_6 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006684 263.0
SHD3_k127_1434919_7 SecD/SecF GG Motif K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000001438 242.0
SHD3_k127_1434919_8 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000004802 217.0
SHD3_k127_1434919_9 Divergent polysaccharide deacetylase K09798 - - 0.0000000000000000000000000002515 128.0
SHD3_k127_1439614_0 Radical SAM domain protein K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006975 278.0
SHD3_k127_1439614_1 Radical SAM domain protein - - - 0.000000000000000000000000000000000000001921 152.0
SHD3_k127_14428_0 Belongs to the short-chain dehydrogenases reductases (SDR) family K14189 - - 0.00000000000000000000000000000000000000000000000002861 186.0
SHD3_k127_14428_1 Protein of unknown function (DUF2723) K14340 - - 0.0000000000000004083 88.0
SHD3_k127_1443298_0 Evidence 5 No homology to any previously reported sequences K09607 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003449 282.0
SHD3_k127_1443298_1 PFAM peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001973 258.0
SHD3_k127_1443298_2 long-chain fatty acid transporting porin activity - - - 0.0000000000000000000000000004117 128.0
SHD3_k127_1445063_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 324.0
SHD3_k127_1445063_1 - - - - 0.0000000000000000000000000000000000000002289 156.0
SHD3_k127_1445063_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000266 69.0
SHD3_k127_1445179_0 CHAT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007559 446.0
SHD3_k127_1445179_1 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001127 285.0
SHD3_k127_1445179_2 Serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000003444 229.0
SHD3_k127_1445179_3 Bacterial Ig-like domain (group 1) - - - 0.000000000001285 82.0
SHD3_k127_1445179_4 major pilin protein fima - - - 0.000000000002625 74.0
SHD3_k127_1445179_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000007721 68.0
SHD3_k127_1447088_0 7TM receptor with intracellular HD hydrolase K07037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 344.0
SHD3_k127_1447088_1 Transporter associated domain - - - 0.0000000000000000000000000000000000000000006978 179.0
SHD3_k127_1447088_2 CBS domain K03699 - - 0.0000000000000000000000000000000613 139.0
SHD3_k127_1447088_3 Protein of unknown function (DUF502) - - - 0.0000000000000000000000000000004502 132.0
SHD3_k127_1447088_4 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000005275 115.0
SHD3_k127_1447088_5 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000195 102.0
SHD3_k127_1448700_0 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006634 267.0
SHD3_k127_1448700_1 B12 binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000004648 238.0
SHD3_k127_1448700_2 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000002661 183.0
SHD3_k127_1448896_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 2.817e-217 708.0
SHD3_k127_1448896_1 Probable zinc-ribbon domain - - - 0.00000000000000000000000000000000004182 138.0
SHD3_k127_1448896_2 Reverse transcriptase-like K03469,K06864 - 3.1.26.4 0.000000000000000000000000000007239 124.0
SHD3_k127_1448896_3 - - - - 0.0000000000000000007532 89.0
SHD3_k127_1448896_4 Zn-ribbon protein, possibly nucleic acid-binding K07164 - - 0.00000000000000006726 91.0
SHD3_k127_1448896_5 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000003888 84.0
SHD3_k127_1448896_6 Fibronectin type 3 domain - - - 0.0000665 55.0
SHD3_k127_1448896_7 - - - - 0.0007236 47.0
SHD3_k127_1452415_0 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000002261 149.0
SHD3_k127_1452415_1 COG1228 Imidazolonepropionase and related K01443 - 3.5.1.25 0.00000000000000000000000000000000001344 141.0
SHD3_k127_1453056_0 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005539 325.0
SHD3_k127_1453056_1 luxR family - - - 0.000008084 59.0
SHD3_k127_1456232_0 PHP domain protein K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023 583.0
SHD3_k127_1456232_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006625 276.0
SHD3_k127_1456232_2 ATP-dependent protease La (LON) substrate-binding domain K07157 - - 0.000000000000000000006882 102.0
SHD3_k127_1456232_3 cellulose binding - - - 0.000000001079 63.0
SHD3_k127_1456232_4 Radical_SAM C-terminal domain K07139 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.00002135 48.0
SHD3_k127_1456240_0 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007168 308.0
SHD3_k127_1456240_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000003232 69.0
SHD3_k127_1462187_0 glycyl-tRNA aminoacylation K01879 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 541.0
SHD3_k127_1462187_1 - - - - 0.00000000000000000000000000000000000000000000002748 174.0
SHD3_k127_1462187_2 Fic/DOC family K07341 - - 0.0000000000000000000000000000000007559 134.0
SHD3_k127_1462187_3 endonuclease activity K07451 - - 0.000000000000000000000000000002855 132.0
SHD3_k127_1462187_4 endonuclease activity - - - 0.00000000000000002101 88.0
SHD3_k127_1462187_5 PFAM glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000003488 68.0
SHD3_k127_1462187_7 Parallel beta-helix repeats - - - 0.0001607 54.0
SHD3_k127_1463768_0 Trypsin-like serine protease K01337 - 3.4.21.50 0.0000000000000000000000000222 128.0
SHD3_k127_1463768_1 Bacterial Ig-like domain (group 1) - - - 0.0000000000000007374 93.0
SHD3_k127_1463768_2 Belongs to the peptidase S8 family - - - 0.000000000000006664 90.0
SHD3_k127_1463768_3 Ca-activated cl channel protein K05030 - - 0.00002402 59.0
SHD3_k127_1476692_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001801 559.0
SHD3_k127_1476692_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004257 419.0
SHD3_k127_1476692_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 295.0
SHD3_k127_1476692_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000003968 191.0
SHD3_k127_1476692_4 Enoyl-CoA hydratase/isomerase K01715 - 4.2.1.17 0.0000000000000000000003573 98.0
SHD3_k127_1478495_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1174.0
SHD3_k127_1479755_0 Belongs to the peptidase M24B family K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000125 239.0
SHD3_k127_1479755_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000001458 224.0
SHD3_k127_1479755_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008821,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0031297,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045005,GO:0046483,GO:0048476,GO:0050896,GO:0051716,GO:0071704,GO:0071932,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901576 3.1.22.4 0.00000000000000000000000000000000000001271 149.0
SHD3_k127_1479755_3 TPM domain K06872 - - 0.0000000000000000000000000000000000007723 146.0
SHD3_k127_1479755_4 TPM domain K08988 - - 0.00000000000000000000000000000000002321 148.0
SHD3_k127_1479755_5 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000007201 135.0
SHD3_k127_1479755_6 four-way junction helicase activity K03550 GO:0000217,GO:0000400,GO:0000724,GO:0000725,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009378,GO:0009379,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0031668,GO:0032392,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0042802,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048476,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051276,GO:0051289,GO:0051716,GO:0065003,GO:0071103,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1902494 3.6.4.12 0.00000000000000000000000165 118.0
SHD3_k127_1479755_7 Redoxin K03564 - 1.11.1.15 0.000000000004482 76.0
SHD3_k127_1479755_8 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.00006493 48.0
SHD3_k127_1481480_0 1,4-alpha-glucan branching enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005004 557.0
SHD3_k127_1481480_1 spermidine synthase - - - 0.0001138 53.0
SHD3_k127_1490003_0 electron transfer activity K00405,K02305,K08738,K17223 - - 0.00000000000000124 89.0
SHD3_k127_1490217_0 spermidine synthase activity K00797 GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001389 424.0
SHD3_k127_1490217_1 PPIC-type PPIASE domain K03769,K07533 - 5.2.1.8 0.0000000000000000000000000000000000006733 158.0
SHD3_k127_1490217_3 Bacteriochlorophyll chlorophyll K04040 - 2.5.1.133,2.5.1.62 0.00000000000000000000000008765 119.0
SHD3_k127_1490217_4 TPR Domain containing protein K12600 - - 0.00000000000000009763 95.0
SHD3_k127_1490217_5 COG0457 FOG TPR repeat - - - 0.000000000000003007 91.0
SHD3_k127_1490217_6 Propeptide_C25 - - - 0.00000000000003116 85.0
SHD3_k127_1490217_7 hmm pf07719 - - - 0.00000003662 64.0
SHD3_k127_1497518_0 Serine threonine protein kinase K08282,K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000002982 218.0
SHD3_k127_1497518_1 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000001093 192.0
SHD3_k127_1502201_0 Alcohol dehydrogenase GroES-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005133 417.0
SHD3_k127_1502201_1 PFAM Ribonuclease BN-like family K07058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004462 325.0
SHD3_k127_1502201_2 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007334 274.0
SHD3_k127_1511702_0 Cysteine-rich secretory protein family - - - 0.0000000000000000000000000000000000000000000000000000005782 209.0
SHD3_k127_1511702_1 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K07443 - - 0.0000000001483 63.0
SHD3_k127_1511702_2 Belongs to the glycosyl hydrolase 30 family K15924 - 3.2.1.136 0.0000000002533 72.0
SHD3_k127_1513499_0 TIGRFAM Flagellar hook-associated protein, FlgK K02396 - - 0.0000000000000000000000000000000000000000000000000000000001105 222.0
SHD3_k127_1514564_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K01876,K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.12,6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 505.0
SHD3_k127_1514564_1 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005331 468.0
SHD3_k127_1514564_2 TIGRFAM Sua5 YciO YrdC YwlC family protein K07566 - 2.7.7.87 0.000000000000000000000008585 109.0
SHD3_k127_1514564_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 GO:0008150,GO:0040007 6.3.5.6,6.3.5.7 0.000000000000000001547 87.0
SHD3_k127_1515067_0 serine-type peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002179 547.0
SHD3_k127_1516241_0 Chain length determinant protein K01153,K05789,K07011,K16554 - 3.1.21.3 0.000000000000000000000000000000000001919 152.0
SHD3_k127_1516241_1 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000003141 124.0
SHD3_k127_1516241_2 Plasmid stabilization system - - - 0.0000000000000000006304 89.0
SHD3_k127_1516241_3 - - - - 0.0000000000005972 70.0
SHD3_k127_1516692_0 PFAM Uncharacterised protein family (UPF0153) - - - 0.000000000000002805 82.0
SHD3_k127_1516692_1 Haloacid dehalogenase-like hydrolase K01091,K06019 - 3.1.3.18,3.6.1.1 0.0000001509 57.0
SHD3_k127_1516692_2 extracellular matrix structural constituent - - - 0.00000293 53.0
SHD3_k127_1522497_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 3.053e-230 722.0
SHD3_k127_1522497_1 it plays a direct role in the translocation of protons across the membrane K02108 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042777,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000000000000000000000000001044 248.0
SHD3_k127_1522497_2 HD domain - - - 0.00000000000000000000000000000000000000000001207 181.0
SHD3_k127_1522497_3 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000009515 118.0
SHD3_k127_1522497_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000008308 108.0
SHD3_k127_1522497_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000001279 107.0
SHD3_k127_1522497_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000002912 89.0
SHD3_k127_1522497_7 - - - - 0.00000000001742 70.0
SHD3_k127_1522497_8 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.0000000003311 63.0
SHD3_k127_1526143_0 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003271 459.0
SHD3_k127_1526143_1 Belongs to the glycosyl hydrolase 13 family - - - 0.0000007972 62.0
SHD3_k127_1537773_0 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 440.0
SHD3_k127_1537773_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004526 276.0
SHD3_k127_1537773_2 Aspartyl protease - - - 0.0000000000000000000000000000000000000000003677 175.0
SHD3_k127_1537773_3 PDZ domain (Also known as DHR or GLGF) K11749 - - 0.0001735 54.0
SHD3_k127_1545062_0 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000000001948 156.0
SHD3_k127_1545062_1 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.0000000000000000000000000000000000009432 144.0
SHD3_k127_1545062_2 Nucleotidyltransferase domain K07075 - - 0.00000000000000000000000000002065 120.0
SHD3_k127_1545062_3 Protein of unknown function DUF86 - - - 0.0000000000000000000000003048 109.0
SHD3_k127_1545300_0 Outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 317.0
SHD3_k127_1545300_1 Biotin-lipoyl like K02005 - - 0.00000000000000000000000000000000000000000000000000000000000004076 223.0
SHD3_k127_1545300_2 Biotin-lipoyl like K02005 - - 0.000000001222 59.0
SHD3_k127_1548464_0 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000003709 92.0
SHD3_k127_1548464_1 metalloendoproteinase 1-like K01402,K07999 - 3.4.24.34 0.000006337 59.0
SHD3_k127_1549887_0 Aldehyde dehydrogenase family K04021,K13922 GO:0003674,GO:0003824,GO:0004029,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0055114 1.2.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009849 501.0
SHD3_k127_1549887_1 PFAM BMC domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 302.0
SHD3_k127_1549887_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004627 282.0
SHD3_k127_1549887_3 Phosphoglycerate mutase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005898 266.0
SHD3_k127_1549887_4 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate K01619 - 4.1.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000007089 269.0
SHD3_k127_1549887_5 galactose-6-phosphate isomerase activity K00761,K01808 - 2.4.2.9,5.3.1.6 0.00000000000000000000000000000000000000000000001595 179.0
SHD3_k127_1549887_6 Protein tyrosine kinase - - - 0.000000000000000000000000000000000000000000004228 188.0
SHD3_k127_1549887_7 BMC K04027 - - 0.000000000000000000000000000000000003432 144.0
SHD3_k127_1549887_8 Ethanolamine utilisation protein EutN/carboxysome - - - 0.000000000000000000000001389 106.0
SHD3_k127_1549887_9 Ethanolamine utilisation protein EutN/carboxysome - - - 0.000000000000000000004329 96.0
SHD3_k127_155573_0 translation release factor activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 362.0
SHD3_k127_155573_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000003815 236.0
SHD3_k127_155573_2 Aldehyde dehydrogenase - - - 0.000000000000000000003896 93.0
SHD3_k127_155573_3 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000004969 83.0
SHD3_k127_155573_4 Belongs to the arylamine N-acetyltransferase family K00675,K15466 - 2.3.1.118 0.00001578 56.0
SHD3_k127_1558025_0 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000202 202.0
SHD3_k127_1558025_1 Rhs Family K20276 - - 0.00000000000000000000001283 117.0
SHD3_k127_1559671_0 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 320.0
SHD3_k127_1559671_1 Belongs to the ribulose-phosphate 3-epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.00000000000000000000000000000000000000000000000000004069 192.0
SHD3_k127_1559671_2 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000006615 81.0
SHD3_k127_1561693_0 Amino acid permease family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 365.0
SHD3_k127_1561693_1 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000006908 202.0
SHD3_k127_1561693_2 trimethylamine methyltransferase K14083 - 2.1.1.250 0.000000000000000000000000000003242 140.0
SHD3_k127_1562405_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000008777 204.0
SHD3_k127_1562405_1 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000008101 161.0
SHD3_k127_1567355_0 polysaccharide export K01991 - - 0.00000000000000000000000000000003034 145.0
SHD3_k127_1567355_1 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791,K13019 - 5.1.3.14,5.1.3.23 0.000000000000000000000000004087 111.0
SHD3_k127_1567355_3 TPR repeat - - - 0.00000001776 68.0
SHD3_k127_1568285_0 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000351 207.0
SHD3_k127_1568285_1 biopolymer transport protein - - - 0.0000000000000000000000001756 110.0
SHD3_k127_1568285_2 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000002427 104.0
SHD3_k127_1572616_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 586.0
SHD3_k127_1572616_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000991 387.0
SHD3_k127_1572616_10 Ribosomal L32p protein family K02911 GO:0000027,GO:0000302,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904 - 0.0000000000000000004558 89.0
SHD3_k127_1572616_2 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 318.0
SHD3_k127_1572616_3 malonyl CoA-acyl carrier protein transacylase K00645,K15327,K15329,K15355,K15469 - 2.3.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009042 287.0
SHD3_k127_1572616_4 reductase K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000002432 277.0
SHD3_k127_1572616_5 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000000000000000000000000000000000000000000000000000004638 207.0
SHD3_k127_1572616_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000704 164.0
SHD3_k127_1572616_7 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000000001943 136.0
SHD3_k127_1572616_8 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.000000000000000000000000002108 113.0
SHD3_k127_1572616_9 Uncharacterized ACR, COG1399 K07040 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000007824 110.0
SHD3_k127_1573842_0 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000001806 152.0
SHD3_k127_1573842_1 NlpC/P60 family - - - 0.000000000000000000000000000000000003728 152.0
SHD3_k127_1573842_2 Peptidase M56 - - - 0.000000000000000000000000000000003045 148.0
SHD3_k127_1574901_0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 0.0000000000000000000000000004311 121.0
SHD3_k127_1574901_1 TatD related DNase K03424 - - 0.000000000000000000000001073 114.0
SHD3_k127_1574901_2 regulatory protein, arsR K03892,K21903 - - 0.00000000000000000000000935 107.0
SHD3_k127_1576393_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000381 601.0
SHD3_k127_1576393_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003846 302.0
SHD3_k127_1576393_2 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000007191 111.0
SHD3_k127_1576393_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000007555 113.0
SHD3_k127_1580694_0 Uncharacterized protein conserved in bacteria (DUF2094) K11890,K11910 - - 0.0000000000001018 83.0
SHD3_k127_1585870_0 Belongs to the ompA family K03286 - - 0.000000000000000000000000000000000000000001965 168.0
SHD3_k127_1585870_1 Acid phosphatase homologues - - - 0.00000000000000000000000000000000007299 144.0
SHD3_k127_1585870_2 VIT family - - - 0.0000000000000000000000000141 110.0
SHD3_k127_1585870_3 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00001999 53.0
SHD3_k127_1587931_0 Aminotransferase class-III K03918,K07250,K20428 - 2.6.1.19,2.6.1.22,2.6.1.33,2.6.1.36 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002564 480.0
SHD3_k127_1587931_1 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000003981 156.0
SHD3_k127_1587931_2 inositol 2-dehydrogenase activity - - - 0.0000000000000000000000000000000001885 143.0
SHD3_k127_1587931_3 Psort location Cytoplasmic, score 8.96 - - - 0.00000000000000000000000000000008479 136.0
SHD3_k127_1587931_4 Psort location CytoplasmicMembrane, score - - - 0.000000000000000000001255 106.0
SHD3_k127_1587931_5 HAD-hyrolase-like K01560 - 3.8.1.2 0.0000817 47.0
SHD3_k127_1593073_0 myo-inosose-2 dehydratase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 322.0
SHD3_k127_1593073_1 benzoyl-CoA oxygenase K15512 - 1.14.13.208 0.000000000000000000000000000000000000000000000000000000005088 212.0
SHD3_k127_1593073_2 sporulation initiation inhibitor K03496 GO:0008150,GO:0022603,GO:0042173,GO:0042174,GO:0043937,GO:0043939,GO:0045595,GO:0045596,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0065007 - 0.000000000000000000000000000000000000000000000000003474 194.0
SHD3_k127_1593073_3 C terminal of Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000001407 149.0
SHD3_k127_1593073_4 chlorophyll binding - - - 0.0000000000000000000000000000000005899 146.0
SHD3_k127_1593073_6 selT selW selH selenoprotein K07401 - - 0.0000000001802 63.0
SHD3_k127_1593073_7 Tetratricopeptide repeat - - - 0.0002146 51.0
SHD3_k127_1595383_0 PFAM PKD domain - - - 0.00000000000000000000001832 111.0
SHD3_k127_1608676_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00372,K02567 - - 0.0 1196.0
SHD3_k127_1608676_1 4 iron, 4 sulfur cluster binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 320.0
SHD3_k127_1608676_2 nitrite transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000004466 210.0
SHD3_k127_1608676_3 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667,K01668 - 4.1.99.1,4.1.99.2 0.000000000000000000000000000000000000000000000000003028 183.0
SHD3_k127_1608676_4 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.000000000000000000000000000000000000000000000289 182.0
SHD3_k127_1609835_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 8.151e-214 688.0
SHD3_k127_1609835_1 CHAT domain - - - 0.0000000000009599 83.0
SHD3_k127_1609835_2 Sigma-70 region 2 - - - 0.000008527 55.0
SHD3_k127_1610796_0 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003426 340.0
SHD3_k127_1610796_1 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000002053 233.0
SHD3_k127_1610796_2 Competence protein ComEC K02238 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000001083 110.0
SHD3_k127_1611112_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000002843 169.0
SHD3_k127_1611112_1 Phosphoribosyl transferase domain - - - 0.0000000000000001961 90.0
SHD3_k127_1611112_2 Belongs to the SEDS family. MrdB RodA subfamily K05837 - - 0.000000000004152 66.0
SHD3_k127_1614848_0 ABC transporter transmembrane region K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009466 401.0
SHD3_k127_1614848_1 Uncharacterized protein conserved in bacteria (DUF2330) - - - 0.000000001234 68.0
SHD3_k127_1616323_0 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000000000000000002829 152.0
SHD3_k127_1616323_1 PFAM FecR protein K01387 - 3.4.24.3 0.00000002954 66.0
SHD3_k127_1616323_2 extracellular matrix structural constituent - - - 0.000005827 59.0
SHD3_k127_1616323_3 - - - - 0.0001744 49.0
SHD3_k127_1619881_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003824 521.0
SHD3_k127_1621876_0 Belongs to the peptidase S8 family - - - 0.000000000000000000009007 107.0
SHD3_k127_1623042_0 Sortilin, neurotensin receptor 3, - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 334.0
SHD3_k127_1623042_1 Cytochrome c - - - 0.000000002387 62.0
SHD3_k127_162632_0 Flagellar basal body protein FlaE K02390 - - 0.000000000000000000000000000000000000000000001501 171.0
SHD3_k127_162632_1 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.0000000000000000000000001909 114.0
SHD3_k127_1631938_0 domain protein K07260 - 3.4.17.14 0.00000000000000000000007395 113.0
SHD3_k127_1631938_1 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000004326 109.0
SHD3_k127_1631938_2 COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.00013 54.0
SHD3_k127_163471_0 Prolyl oligopeptidase K01322 - 3.4.21.26 3.146e-197 633.0
SHD3_k127_163471_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005176 392.0
SHD3_k127_1634955_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004443 308.0
SHD3_k127_1634955_1 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.000000000000000000002082 103.0
SHD3_k127_164187_0 PFAM ABC transporter related K02049,K15555,K15578 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 425.0
SHD3_k127_164187_1 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009366 312.0
SHD3_k127_1643597_0 Ribonuclease E/G family K08300,K08301 GO:0003674,GO:0003824,GO:0004518,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008996,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0140098,GO:1901360 3.1.26.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 429.0
SHD3_k127_1643597_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000005945 80.0
SHD3_k127_1649735_0 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000002934 70.0
SHD3_k127_1649735_1 Phosphotransferase enzyme family - - - 0.00000145 60.0
SHD3_k127_1653853_0 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000001275 238.0
SHD3_k127_1653853_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.00000000000000000000000000000000000005228 144.0
SHD3_k127_1660795_0 benzoyl-CoA reductase K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000494 617.0
SHD3_k127_1660795_1 Enoyl-CoA hydratase/isomerase K07539 - 3.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 480.0
SHD3_k127_1660795_10 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K02584 - - 0.000000001351 70.0
SHD3_k127_1660795_2 Benzoyl-CoA reductase subunit K04114 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008198 466.0
SHD3_k127_1660795_3 benzoyl-CoA reductase K04112 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 382.0
SHD3_k127_1660795_4 BadF/BadG/BcrA/BcrD ATPase family K04115 - 1.3.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 321.0
SHD3_k127_1660795_5 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000001269 267.0
SHD3_k127_1660795_6 Enoyl-(Acyl carrier protein) reductase K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000003426 213.0
SHD3_k127_1660795_7 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000003665 140.0
SHD3_k127_1660795_8 2-hydroxyglutaryl-CoA dehydratase, D-component K04112 - 1.3.7.8 0.0000000000000000001167 92.0
SHD3_k127_1660795_9 Zinc-binding dehydrogenase K07538 - 1.1.1.368 0.0000000000000000004713 88.0
SHD3_k127_1662269_0 tRNA synthetases class II (D, K and N) K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 572.0
SHD3_k127_1662269_1 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) K12340 - - 0.0000000000000000000000002443 121.0
SHD3_k127_1662269_2 MotA/TolQ/ExbB proton channel family K03561 - - 0.000000000000000000002339 105.0
SHD3_k127_1665426_0 endonuclease activity K07451 - - 0.0000000000000000000000000279 117.0
SHD3_k127_1665542_0 protein conserved in bacteria K11891 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005257 342.0
SHD3_k127_1665542_1 Type VI secretion system protein DotU K11892 - - 0.000000000000000003905 94.0
SHD3_k127_1665542_2 type VI secretion protein, VC_A0114 family K11893 - - 0.00000000009717 64.0
SHD3_k127_1667872_0 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007266 474.0
SHD3_k127_1667872_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 403.0
SHD3_k127_1667872_2 NADH-quinone oxidoreductase chain L K00341 - 1.6.5.3 0.0000000000000000007456 90.0
SHD3_k127_1676817_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 8.932e-197 633.0
SHD3_k127_1676817_1 ArgE DapE Acy1 family protein K01438,K01439 - 3.5.1.16,3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 521.0
SHD3_k127_1676817_10 lipoprotein localization to outer membrane K02004 - - 0.00000000000000000003525 102.0
SHD3_k127_1676817_11 - - - - 0.000000000000000008983 96.0
SHD3_k127_1676817_12 Polymer-forming cytoskeletal - - - 0.0000000000001278 78.0
SHD3_k127_1676817_13 membrane protein (DUF2079) - - - 0.0000000000005454 82.0
SHD3_k127_1676817_14 - - - - 0.0000101 58.0
SHD3_k127_1676817_15 - - - - 0.00008576 51.0
SHD3_k127_1676817_2 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 364.0
SHD3_k127_1676817_3 ATPases associated with a variety of cellular activities K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000001765 239.0
SHD3_k127_1676817_4 ABC 3 transport family K02075 - - 0.000000000000000000000000000000000000000000000000000000004974 208.0
SHD3_k127_1676817_5 O-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000002632 202.0
SHD3_k127_1676817_6 Belongs to the bacterial solute-binding protein 9 family K02077,K09815,K09818 - - 0.000000000000000000000000000000000000000000002039 178.0
SHD3_k127_1676817_7 CoA binding domain K06929 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000002355 153.0
SHD3_k127_1676817_8 arylsulfatase activity K01133 - 3.1.6.6 0.000000000000000000000000000000000000353 162.0
SHD3_k127_1676817_9 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000001935 119.0
SHD3_k127_1680806_0 Arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000004204 261.0
SHD3_k127_1680806_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000000000000000000000000000000000000000000000000000000000000000000004225 248.0
SHD3_k127_1680806_2 Helix-turn-helix XRE-family like proteins - - - 0.00000000000000000001676 101.0
SHD3_k127_1680806_3 Cupin domain - - - 0.00000000000000001048 93.0
SHD3_k127_1680806_4 3D domain protein - - - 0.000000000000002252 83.0
SHD3_k127_1689016_0 Nickel-dependent hydrogenase K06281 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002214 505.0
SHD3_k127_1689016_1 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000005697 255.0
SHD3_k127_1689016_2 hydrogenase large subunit K06281 - 1.12.99.6 0.00000000000000004315 81.0
SHD3_k127_1689016_3 spore germination K03605,K04656,K08315 - 3.4.23.51 0.0000000000000002326 87.0
SHD3_k127_1689016_4 response regulator, receiver K13924 - 2.1.1.80,3.1.1.61 0.0000000000107 74.0
SHD3_k127_1696018_0 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000001825 193.0
SHD3_k127_1696018_1 glycosyl hydrolase, BNR repeat-containing protein - - - 0.00000000000000000000000000000004102 146.0
SHD3_k127_1696018_2 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000981 111.0
SHD3_k127_1697280_0 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000002731 128.0
SHD3_k127_1697280_1 Domain of unknown function (DUF4382) - - - 0.000000004335 68.0
SHD3_k127_1697280_2 Tetratricopeptide repeat - - - 0.0002909 51.0
SHD3_k127_1729543_0 Uncharacterised conserved protein (DUF2156) K04567,K14205 - 2.3.2.3,6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007881 400.0
SHD3_k127_1729543_1 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 336.0
SHD3_k127_1729543_2 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 331.0
SHD3_k127_1729543_3 Low affinity iron permease - - - 0.0000000000000000000000000000000000000000000000539 177.0
SHD3_k127_1729543_4 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000526 143.0
SHD3_k127_1729543_5 helix_turn_helix, mercury resistance K19591,K22491 - - 0.0000000000000000001638 98.0
SHD3_k127_1773937_0 Parallel beta-helix repeats - - - 0.0000000000000000000001747 115.0
SHD3_k127_1773937_1 Conserved repeat domain - - - 0.00000000007849 74.0
SHD3_k127_1773937_2 - - - - 0.00000000008821 77.0
SHD3_k127_1773937_3 Fibronectin type 3 domain - - - 0.000000000654 62.0
SHD3_k127_1773937_4 6-phosphogluconolactonase activity - - - 0.00000001636 69.0
SHD3_k127_1778088_0 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 451.0
SHD3_k127_1778088_1 Alcohol dehydrogenase GroES-like domain K00001,K18369 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008846 274.0
SHD3_k127_1781940_0 Oxidoreductase NAD-binding domain K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000006901 174.0
SHD3_k127_1781940_2 Methyltransferase domain - - - 0.0000000000006968 76.0
SHD3_k127_1781940_3 Tetratricopeptide repeat - - - 0.0000000006915 65.0
SHD3_k127_1791021_0 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 437.0
SHD3_k127_1791021_1 Integral membrane sensor signal transduction histidine kinase K07709,K13924 - 2.1.1.80,2.7.13.3,3.1.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 309.0
SHD3_k127_1791021_2 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000008333 153.0
SHD3_k127_1791021_3 Transport permease protein - - - 0.0000000000000000002179 93.0
SHD3_k127_1799698_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 3.062e-237 747.0
SHD3_k127_1806344_0 Patatin-like phospholipase - - - 0.000000000000000000000000000000000000000004986 165.0
SHD3_k127_1806344_1 MoaE protein K21142 - 2.8.1.12 0.00000000000000000000000000000008739 127.0
SHD3_k127_1806344_2 Cupin domain - - - 0.000000000000000000005533 101.0
SHD3_k127_1806344_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000001523 85.0
SHD3_k127_1806344_4 long-chain fatty acid transport protein - - - 0.0001524 54.0
SHD3_k127_1814956_0 Evidence 5 No homology to any previously reported sequences K17713 - - 0.00000000000000000000000000000000000000000000000007944 203.0
SHD3_k127_1821385_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 416.0
SHD3_k127_1843094_0 water channel activity K02440,K06188,K09874 - - 0.0000000000000000000000000000000000000000000000000001177 196.0
SHD3_k127_1843094_1 Dienelactone hydrolase family K01061 - 3.1.1.45 0.00000000000000000000000000000000000000000000000001045 195.0
SHD3_k127_1843094_2 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000003089 124.0
SHD3_k127_1848454_0 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000217 282.0
SHD3_k127_1848454_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007945 247.0
SHD3_k127_1871750_0 Belongs to the peptidase M16 family K07263 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003693 501.0
SHD3_k127_1882567_0 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001548 306.0
SHD3_k127_1882567_1 - - - - 0.0000000000000000000005428 105.0
SHD3_k127_1904947_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000001144 136.0
SHD3_k127_1904947_1 Belongs to the peptidase S8 family K06113,K12685 - 3.2.1.99 0.00000000005111 74.0
SHD3_k127_1909266_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007355 566.0
SHD3_k127_1909266_1 Domain present in PSD-95, Dlg, and ZO-1/2. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 368.0
SHD3_k127_1909266_2 Glutamine synthetase type III N terminal K01915 - 6.3.1.2 0.0000000000000000000000000000003183 131.0
SHD3_k127_1909266_3 purine nucleotide biosynthetic process K02103,K02529 - - 0.0000000000005744 72.0
SHD3_k127_1909266_4 Tetratricopeptide repeat - - - 0.00000000007263 76.0
SHD3_k127_194157_0 Myo-inositol-1-phosphate synthase, GAPDH domain protein K01858 - 5.5.1.4 8.48e-208 654.0
SHD3_k127_194157_1 NfeD-like C-terminal, partner-binding K07403 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 371.0
SHD3_k127_194157_2 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 341.0
SHD3_k127_194157_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000001257 186.0
SHD3_k127_195399_0 Belongs to the CarB family K01955 - 6.3.5.5 5.585e-234 743.0
SHD3_k127_195399_1 Tetratricopeptide repeat - - - 0.000000000000000000000000007024 121.0
SHD3_k127_1973891_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K07250 - 2.6.1.19,2.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002918 533.0
SHD3_k127_1973891_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003657 518.0
SHD3_k127_1973891_2 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 494.0
SHD3_k127_1973891_3 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.0000000000000000000000000000000000000000000008199 187.0
SHD3_k127_1973891_4 Biotin-requiring enzyme - - - 0.00000000001541 77.0
SHD3_k127_1973891_5 Pfam:DUF490 K09800 - - 0.00000000347 71.0
SHD3_k127_1981828_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 613.0
SHD3_k127_1981828_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 GO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001096 366.0
SHD3_k127_1981828_2 - - - - 0.0000000000000000000000000000000000177 139.0
SHD3_k127_1981828_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000004257 148.0
SHD3_k127_1981828_4 COG2104 Sulfur transfer protein involved in thiamine biosynthesis K03154 - - 0.000000000011 67.0
SHD3_k127_202151_0 Tetratricopeptide repeat - - - 0.00000000004963 75.0
SHD3_k127_20315_0 AMP-binding enzyme K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 516.0
SHD3_k127_20315_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008664 313.0
SHD3_k127_20315_2 TIGRFAM Diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001975 269.0
SHD3_k127_20315_3 PFAM response regulator receiver K02483,K07658,K07668 - - 0.00000000000000000000000000000000000000234 151.0
SHD3_k127_20315_4 Glutamine amidotransferase domain - - - 0.00000227 58.0
SHD3_k127_20315_5 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0005136 48.0
SHD3_k127_204222_0 Belongs to the 5'-nucleotidase family K01081,K11751,K17224 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000342 402.0
SHD3_k127_2086010_0 Extradiol ring-cleavage dioxygenase K15777 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006171 360.0
SHD3_k127_2086010_1 TGS domain K06944 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001196 275.0
SHD3_k127_2100027_0 GAF domain-containing protein K08968 - 1.8.4.14 0.000000000000000000000000000000000000000000000001254 194.0
SHD3_k127_2100027_1 diguanylate cyclase - - - 0.0000000000000001012 92.0
SHD3_k127_2100027_2 cellulose binding - - - 0.0000000000001102 75.0
SHD3_k127_2100027_3 Psort location CytoplasmicMembrane, score K19225 - 3.4.21.105 0.000000000003157 79.0
SHD3_k127_210403_0 Aldehyde dehydrogenase family K00141,K22187 - 1.2.1.28 2.595e-208 658.0
SHD3_k127_210403_1 DNA-binding response regulator K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 398.0
SHD3_k127_210403_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000005222 207.0
SHD3_k127_210403_3 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000001588 155.0
SHD3_k127_211838_0 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002963 253.0
SHD3_k127_211838_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000006038 187.0
SHD3_k127_211838_2 Isoprenylcysteine carboxyl methyltransferase (ICMT) family K00587 - 2.1.1.100 0.000000000000000000000000000000000009163 142.0
SHD3_k127_211838_3 2 iron, 2 sulfur cluster binding - - - 0.000000007859 57.0
SHD3_k127_211838_4 STAS domain K04749 - - 0.00001732 52.0
SHD3_k127_213287_0 PFAM UBA THIF-type NAD FAD binding K21147 - 2.7.7.80,2.8.1.11 1.266e-201 640.0
SHD3_k127_213287_1 Cysteine synthase B K12339 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 392.0
SHD3_k127_213287_2 JAB/MPN domain - - - 0.000000000000000000000000000000000004465 145.0
SHD3_k127_213322_0 Molydopterin dinucleotide binding domain K17050 - - 9.773e-256 815.0
SHD3_k127_213322_1 COG1140 Nitrate reductase beta subunit K17051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 422.0
SHD3_k127_213322_2 TIGRFAM DMSO reductase family type II enzyme, heme b subunit K17052 - - 0.00001152 56.0
SHD3_k127_2146583_0 ATP dependent DNA ligase C terminal region K01971 - 6.5.1.1 8.637e-267 845.0
SHD3_k127_2146583_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005137 572.0
SHD3_k127_2146583_10 - - - - 0.00000000000000000000007304 113.0
SHD3_k127_2146583_11 BON domain - - - 0.0000000000000000001586 98.0
SHD3_k127_2146583_12 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000004068 77.0
SHD3_k127_2146583_2 PFAM ATP dependent DNA ligase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002045 436.0
SHD3_k127_2146583_3 DNA polymerase LigD polymerase domain K01971 - 6.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000465 439.0
SHD3_k127_2146583_4 COG1073 Hydrolases of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 385.0
SHD3_k127_2146583_5 PFAM Cation efflux - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009273 324.0
SHD3_k127_2146583_6 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002322 282.0
SHD3_k127_2146583_7 - - - - 0.00000000000000000000000000000000000000000000000000001556 195.0
SHD3_k127_2146583_8 cellulose binding - - - 0.000000000000000000000000000000000000000000000001266 186.0
SHD3_k127_2146583_9 Thioredoxin - - - 0.00000000000000000000005741 109.0
SHD3_k127_2152777_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 6.14e-303 943.0
SHD3_k127_2152777_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000001912 210.0
SHD3_k127_2152777_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001206 198.0
SHD3_k127_2152777_3 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000152 82.0
SHD3_k127_2153511_0 threonyl-tRNA aminoacylation K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.488e-244 772.0
SHD3_k127_2153511_1 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006807 582.0
SHD3_k127_2153511_10 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000001387 57.0
SHD3_k127_2153511_2 Ferredoxin-fold anticodon binding domain K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 566.0
SHD3_k127_2153511_3 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 372.0
SHD3_k127_2153511_4 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 293.0
SHD3_k127_2153511_5 TIGRFAM metallophosphoesterase, MG_246 BB_0505 family K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003658 293.0
SHD3_k127_2153511_6 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767 - 0.000000000000000000000000000000000000000000000000000001559 201.0
SHD3_k127_2153511_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000465 139.0
SHD3_k127_2153511_8 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000004761 129.0
SHD3_k127_2153511_9 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.0000000000001768 75.0
SHD3_k127_2154672_0 PFAM Formylglycine-generating sulfatase enzyme - - - 0.00000000000000000000000000005341 123.0
SHD3_k127_2154672_1 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.00000000000000000003474 92.0
SHD3_k127_2158050_0 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000201 276.0
SHD3_k127_2158050_1 Fumarylacetoacetate (FAA) hydrolase family K16165 - 3.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000001256 243.0
SHD3_k127_2158050_2 PFAM Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000000000184 231.0
SHD3_k127_2158050_3 Calcineurin-like phosphoesterase K03547 - - 0.0000000000000000000000000000000000000000000000000000000000009116 228.0
SHD3_k127_2158050_4 AAA domain - - - 0.00000000000000000000000000000000000000000001367 185.0
SHD3_k127_2158050_5 IrrE N-terminal-like domain - - - 0.00007124 56.0
SHD3_k127_2158050_6 Putative ATP-binding cassette K01992 - - 0.000191 54.0
SHD3_k127_2159736_0 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 402.0
SHD3_k127_2159736_1 Branched-chain amino acid transport system / permease component K01995,K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 325.0
SHD3_k127_2159736_2 Branched-chain amino acid ATP-binding cassette transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005677 315.0
SHD3_k127_2159736_3 ABC transporter related K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005775 313.0
SHD3_k127_2164970_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 4.356e-238 777.0
SHD3_k127_2164970_1 Glycosyl transferases group 1 K00754 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006983 375.0
SHD3_k127_2164970_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004164 362.0
SHD3_k127_2164970_3 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 319.0
SHD3_k127_2164970_4 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000000000007348 208.0
SHD3_k127_2164970_5 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000007922 158.0
SHD3_k127_2164970_6 Belongs to the BshC family K22136 - - 0.0000000000000000000000000000000000000005839 169.0
SHD3_k127_2164970_7 Tellurite resistance protein TehB - - - 0.000000000000000000000000000000000001208 148.0
SHD3_k127_2165533_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006697 447.0
SHD3_k127_2169124_0 PFAM Sodium sulphate symporter K14445 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008138 478.0
SHD3_k127_2171977_0 - - - - 0.000000000000000000000000001095 114.0
SHD3_k127_2172379_0 Subtilase family - - - 0.000000000000000000000000000000000000000000009258 189.0
SHD3_k127_2172379_1 M6 family metalloprotease domain protein - - - 0.000000000001356 83.0
SHD3_k127_2172379_2 Fungalysin metallopeptidase (M36) - - - 0.00000000008385 77.0
SHD3_k127_2173239_0 RelA SpoT domain protein - - - 0.000000000000000000000000000000000000000000000000000001487 203.0
SHD3_k127_2173239_1 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000001559 198.0
SHD3_k127_2173239_2 Belongs to the peptidase S11 family K01286,K07258,K07262 GO:0000003,GO:0000270,GO:0000910,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006022,GO:0006508,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0019954,GO:0022402,GO:0022414,GO:0030203,GO:0032505,GO:0042221,GO:0042493,GO:0042597,GO:0043093,GO:0043170,GO:0044238,GO:0044464,GO:0045229,GO:0050896,GO:0051301,GO:0070011,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0140096,GO:1901135,GO:1901564 3.4.16.4 0.00000000000000000000000000000000000000000000000002241 194.0
SHD3_k127_2173239_3 Could be involved in septation K06412 - - 0.00000000000002608 79.0
SHD3_k127_2175580_0 PFAM Cytochrome b b6 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004082 578.0
SHD3_k127_2175580_1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001224 568.0
SHD3_k127_2175580_2 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 324.0
SHD3_k127_2175580_3 PFAM Rieske 2Fe-2S domain K02636,K03886 - 1.10.9.1 0.000000000000000000000000000000000002988 149.0
SHD3_k127_2175580_4 Protein of unknown function, DUF393 - - - 0.000000000000000000000000000000000375 136.0
SHD3_k127_2175580_5 DinB family - - - 0.0000003604 57.0
SHD3_k127_2176267_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000003529 135.0
SHD3_k127_2176267_1 AAA domain - - - 0.000000000000000000001703 98.0
SHD3_k127_2176267_2 protein secretion K08651 - 3.4.21.66 0.000000000000001028 91.0
SHD3_k127_2176267_3 amino acid activation for nonribosomal peptide biosynthetic process K01176,K01448,K17713,K20952 GO:0003674,GO:0005198,GO:0005199,GO:0005575,GO:0005623,GO:0008150,GO:0009273,GO:0009987,GO:0030115,GO:0030312,GO:0042546,GO:0044085,GO:0044464,GO:0071554,GO:0071840,GO:0071944 3.2.1.1,3.5.1.28 0.000000000000654 81.0
SHD3_k127_2176267_4 Histidine kinase-like ATPase domain - - - 0.000004342 55.0
SHD3_k127_2176267_5 Epidermal growth factor-like domain. - - - 0.00006508 55.0
SHD3_k127_2182550_0 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006877 394.0
SHD3_k127_2182550_1 PFAM ABC transporter - - - 0.000000000000000000000000000000000000000000000000000000001548 202.0
SHD3_k127_2182550_2 - - - - 0.000000000001316 79.0
SHD3_k127_2182550_3 xylan catabolic process K03932 - - 0.00000001255 66.0
SHD3_k127_2182627_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002847 277.0
SHD3_k127_2182627_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000008781 242.0
SHD3_k127_2182627_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000001033 165.0
SHD3_k127_2188686_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07788 - - 4.886e-308 963.0
SHD3_k127_2189770_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 399.0
SHD3_k127_2189770_1 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000001299 287.0
SHD3_k127_2191922_0 Type VI secretion system effector, Hcp K11903 - - 0.000000000000000000000000000000000000000000000008442 178.0
SHD3_k127_2191922_1 - - - - 0.0000000000000000000000000000000000000000002578 175.0
SHD3_k127_2197151_0 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 294.0
SHD3_k127_2197151_1 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.00000007473 62.0
SHD3_k127_2206963_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 595.0
SHD3_k127_2206963_1 ABC transporter K02021,K06147,K06148,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 466.0
SHD3_k127_2206963_10 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000001482 205.0
SHD3_k127_2206963_11 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.00000000000000000000000000000000000000000000000000002513 194.0
SHD3_k127_2206963_12 ADP-heptose-lipopolysaccharide heptosyltransferase activity K02843 - - 0.000000000000000000000000000000000000000000000004337 189.0
SHD3_k127_2206963_13 PFAM OmpA MotB domain protein K03640 - - 0.000000000000000000000000000000000000009153 151.0
SHD3_k127_2206963_14 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000008097 150.0
SHD3_k127_2206963_15 PFAM glycosyl transferase family 9 K02843,K02849 - - 0.00000000000000000000000000000008366 140.0
SHD3_k127_2206963_16 Outer membrane lipoprotein - - - 0.0000000000000000000000001054 119.0
SHD3_k127_2206963_17 Uncharacterized conserved protein (DUF2203) - - - 0.0000000000000001485 86.0
SHD3_k127_2206963_18 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000009052 85.0
SHD3_k127_2206963_19 TonB C terminal K03646,K03832 - - 0.0000000000006757 80.0
SHD3_k127_2206963_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 426.0
SHD3_k127_2206963_20 Protein of unknown function (DUF507) - - - 0.00000002368 61.0
SHD3_k127_2206963_21 Protein of unknown function (DUF507) - - - 0.00003042 50.0
SHD3_k127_2206963_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003637 421.0
SHD3_k127_2206963_4 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 419.0
SHD3_k127_2206963_5 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002834 321.0
SHD3_k127_2206963_6 pfkB family carbohydrate kinase K03272 - 2.7.1.167,2.7.7.70 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007382 297.0
SHD3_k127_2206963_7 glycosyl transferase group 1 K00754 - - 0.000000000000000000000000000000000000000000000000000000000000003883 232.0
SHD3_k127_2206963_8 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000001305 217.0
SHD3_k127_2206963_9 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000006641 209.0
SHD3_k127_2211645_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000002021 224.0
SHD3_k127_2211645_1 PFAM PAP2 superfamily K19302 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009605,GO:0009607,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0042578,GO:0043207,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0046467,GO:0046493,GO:0050896,GO:0051701,GO:0051704,GO:0051707,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0071704,GO:0075136,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.6.1.27 0.0000000000000000000005414 102.0
SHD3_k127_2214196_0 PFAM PhoH family protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 331.0
SHD3_k127_2214196_2 7TM receptor with intracellular HD hydrolase K07037 - - 0.000552 53.0
SHD3_k127_2214638_0 PAS PAC sensor hybrid histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 469.0
SHD3_k127_2214638_1 SERine Proteinase INhibitors K13963 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004508 323.0
SHD3_k127_2214638_2 DEAD DEAH box helicase K03724 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 301.0
SHD3_k127_2214638_3 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.77 0.0000000000000000002131 95.0
SHD3_k127_2222304_0 PFAM Type II secretion system protein E K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 316.0
SHD3_k127_2222304_1 Secretin and TonB N terminus short domain K02453,K02507,K02666 - - 0.00000000000000000000000000000000000000000000000000000005426 212.0
SHD3_k127_2222304_2 pilus assembly protein K02662 - - 0.0009112 51.0
SHD3_k127_2233678_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 404.0
SHD3_k127_2233678_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000002229 218.0
SHD3_k127_2235872_0 lipolytic protein G-D-S-L family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001634 264.0
SHD3_k127_2235872_1 PFAM Peptidase M19, renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000003274 105.0
SHD3_k127_2235947_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0001968,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030312,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035375,GO:0042866,GO:0043236,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050840,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 4.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 573.0
SHD3_k127_2235947_1 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000007459 153.0
SHD3_k127_2235947_2 surface antigen - - - 0.000000000000000000000000002913 123.0
SHD3_k127_2235947_3 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0000000000000000000000008841 117.0
SHD3_k127_2235947_4 Type ii and iii secretion system protein - - - 0.0000000000003682 82.0
SHD3_k127_2235947_5 Evidence 5 No homology to any previously reported sequences - - - 0.000000000001715 79.0
SHD3_k127_2235947_6 - - - - 0.000009591 56.0
SHD3_k127_2235947_7 septum formation initiator K05589 - - 0.0002042 49.0
SHD3_k127_2236886_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002492 267.0
SHD3_k127_2236886_1 type II and III secretion system protein K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000004969 244.0
SHD3_k127_2237311_0 Dehydrogenase E1 component K11381 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003473 469.0
SHD3_k127_2237925_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1012.0
SHD3_k127_2237925_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000002731 242.0
SHD3_k127_2244022_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005185 332.0
SHD3_k127_2244022_1 LVIVD repeat K01179 - 3.2.1.4 0.0000000000000005031 92.0
SHD3_k127_2251047_0 serine-type peptidase activity K01990,K08884,K12132,K18912 - 1.14.99.50,2.7.11.1 3.555e-268 855.0
SHD3_k127_2251047_1 ATPases associated with a variety of cellular activities K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 441.0
SHD3_k127_2251047_2 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001689 368.0
SHD3_k127_2251047_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 332.0
SHD3_k127_2251047_4 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004157 279.0
SHD3_k127_2252631_0 Peptidase M3A and M3B thimet oligopeptidase F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 484.0
SHD3_k127_2252631_1 Large family of predicted nucleotide-binding domains K07175 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 487.0
SHD3_k127_2252631_2 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 429.0
SHD3_k127_2252631_3 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000006579 217.0
SHD3_k127_2252631_4 GDSL-like Lipase/Acylhydrolase family - - - 0.00000121 61.0
SHD3_k127_2254353_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000604 363.0
SHD3_k127_2254353_1 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000008415 241.0
SHD3_k127_2254353_2 COG3209 Rhs family protein - - - 0.0005241 53.0
SHD3_k127_2261551_1 Transcriptional regulator, Crp Fnr family K01420 - - 0.000000000000000000000000000004773 129.0
SHD3_k127_2261551_2 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000001069 73.0
SHD3_k127_2265774_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000001136 186.0
SHD3_k127_2271761_0 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006812 516.0
SHD3_k127_2271761_1 Haemolysin-III related K11068 - - 0.00000000000000000000000000000000000000000000000000004153 200.0
SHD3_k127_2271761_2 Bacterial protein of unknown function (DUF853) K06915 - - 0.00000000000000001131 83.0
SHD3_k127_2271761_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.0000000000000004109 91.0
SHD3_k127_2274461_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007525 432.0
SHD3_k127_2274461_1 PFAM adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000000000000000000000000000000003177 148.0
SHD3_k127_2274461_2 NYN domain - - - 0.0000000000000000001334 98.0
SHD3_k127_2277056_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000000000000002147 226.0
SHD3_k127_2277056_1 mannose-ethanolamine phosphotransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000007349 226.0
SHD3_k127_2277056_2 polysaccharide biosynthetic process - - - 0.000000000000000000000000002268 128.0
SHD3_k127_2280228_0 Curli production assembly/transport component CsgG K04087 - - 0.00000000000003064 85.0
SHD3_k127_2280228_1 Kelch motif - - - 0.000000004123 67.0
SHD3_k127_2283434_0 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000000002973 129.0
SHD3_k127_2283434_1 CAAX protease self-immunity K07052 - - 0.0000000000000000000298 105.0
SHD3_k127_2286002_0 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162 332.0
SHD3_k127_2286002_1 Insulinase (Peptidase family M16) K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001183 263.0
SHD3_k127_2286002_2 - - - - 0.0000000000000000000000000000000000000006285 164.0
SHD3_k127_229107_0 - - - - 0.00000000000000000000000002516 123.0
SHD3_k127_229107_1 Cupredoxin-like domain - - - 0.0000000000000003322 83.0
SHD3_k127_2293645_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000007285 211.0
SHD3_k127_2293645_1 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000000000001176 208.0
SHD3_k127_2302057_0 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 382.0
SHD3_k127_2302057_1 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001985 262.0
SHD3_k127_2307676_0 3-isopropylmalate dehydratase activity K01681,K01703,K01704,K17749 - 4.2.1.3,4.2.1.33,4.2.1.35 2.312e-246 777.0
SHD3_k127_2307676_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000002253 235.0
SHD3_k127_2307676_2 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000001185 218.0
SHD3_k127_2307676_3 SPTR Glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000008296 206.0
SHD3_k127_2307676_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000009228 114.0
SHD3_k127_2307676_6 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.0000004069 63.0
SHD3_k127_231224_0 Sigma-54 interaction domain K07714 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002043 334.0
SHD3_k127_231224_1 Integrin alpha (beta-propellor repeats). - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 316.0
SHD3_k127_231224_2 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003098 307.0
SHD3_k127_231224_3 Universal stress protein family - - - 0.00000000000000000000000000000000000007198 146.0
SHD3_k127_231224_4 heat shock protein binding - - - 0.0000000000000001617 80.0
SHD3_k127_2312357_0 PFAM Carbon starvation protein CstA K06200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009856 408.0
SHD3_k127_2312357_1 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003652 255.0
SHD3_k127_2312357_2 PFAM Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.00000000000000000000000002545 125.0
SHD3_k127_2314920_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 GO:0003674,GO:0003824,GO:0004038,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006145,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0040007,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046113,GO:0046390,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004685 409.0
SHD3_k127_2314920_1 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006704 385.0
SHD3_k127_2314920_2 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006932 366.0
SHD3_k127_2314920_3 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000003937 259.0
SHD3_k127_2314920_4 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000001033 178.0
SHD3_k127_2314920_5 - - - - 0.0000000005209 61.0
SHD3_k127_2315694_0 Cytochrome b subunit of formate dehydrogenase-like protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 319.0
SHD3_k127_2315694_1 formate dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000008477 203.0
SHD3_k127_2315694_2 RNA polymerase K03088 - - 0.00000000000000000000000000000000005056 143.0
SHD3_k127_2319099_0 Radical SAM superfamily K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 494.0
SHD3_k127_2319099_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639,K00652 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 2.3.1.29,2.3.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 492.0
SHD3_k127_2319099_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 392.0
SHD3_k127_2319099_3 Sugar (and other) transporter K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008079 297.0
SHD3_k127_2319099_5 NmrA-like family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000357 213.0
SHD3_k127_2319673_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0004222,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006508,GO:0006807,GO:0006950,GO:0006979,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0010468,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030145,GO:0030163,GO:0030554,GO:0031224,GO:0031226,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0040007,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043273,GO:0044238,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 1.163e-256 810.0
SHD3_k127_2319673_1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000001623 252.0
SHD3_k127_2319673_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.00000000000000000000000000000000000000000000000000000000000000000005052 247.0
SHD3_k127_2319673_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000004628 232.0
SHD3_k127_2319673_4 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000008948 211.0
SHD3_k127_2319673_5 Adenylate cyclase K01768 - 4.6.1.1 0.0000000000000000000003217 107.0
SHD3_k127_2319673_6 Transposase - - - 0.00001834 56.0
SHD3_k127_232808_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 2.025e-263 829.0
SHD3_k127_232808_1 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00174 GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0030312,GO:0044464,GO:0050896,GO:0055114,GO:0071944 1.2.7.11,1.2.7.3 2.669e-256 804.0
SHD3_k127_232808_2 Pterin binding enzyme K00548,K15023 - 2.1.1.13,2.1.1.258 1.032e-223 705.0
SHD3_k127_232808_3 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 437.0
SHD3_k127_2333566_0 CHAT domain - - - 0.0000000000000000000000000000000000000000000000001627 201.0
SHD3_k127_2333566_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000006855 123.0
SHD3_k127_2346843_0 bacterial-type flagellum organization K02282,K04562 - - 0.0000000000000000000000000000000000000000000000000000000005166 211.0
SHD3_k127_2346843_1 Diguanylate cyclase, GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000003117 221.0
SHD3_k127_2346843_2 Belongs to the sigma-70 factor family K02405 - - 0.000000000000000000000000000000000000000000000000000000006013 208.0
SHD3_k127_2346843_3 TIGRFAM Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000006085 193.0
SHD3_k127_2351629_0 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004425 395.0
SHD3_k127_2351629_1 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.0000000000000000000000000000000000000000000433 170.0
SHD3_k127_2351629_2 Cyclic nucleotide-monophosphate binding domain - - - 0.00000000000000000000000002608 122.0
SHD3_k127_2351629_3 antisigma factor binding K04749,K06378 - - 0.000000000002625 74.0
SHD3_k127_2351629_4 Adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.00000000352 69.0
SHD3_k127_2357785_0 CBS domain-containing protein K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 357.0
SHD3_k127_2357785_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000005456 224.0
SHD3_k127_2357785_2 PFAM YbaK prolyl-tRNA synthetase associated region K19055 - - 0.00000000000000000000000000000000000000000000000000001038 209.0
SHD3_k127_2357785_3 radical SAM domain protein - - - 0.00000000000000000000001347 113.0
SHD3_k127_2357785_4 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000549 60.0
SHD3_k127_2358002_0 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000008486 149.0
SHD3_k127_2358002_1 serine-type peptidase activity K01278,K06889 - 3.4.14.5 0.000000000000000000000000000000000005524 140.0
SHD3_k127_2358002_2 1,4-alpha-glucan branching enzyme activity K00700 - 2.4.1.18 0.00000000000000006242 89.0
SHD3_k127_2358002_3 - - - - 0.0000000003836 65.0
SHD3_k127_2358002_4 SdrD B-like domain - - - 0.00000002914 65.0
SHD3_k127_2360383_0 Domain of unknown function (DUF4162) K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 333.0
SHD3_k127_2360383_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 296.0
SHD3_k127_2362889_0 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000178 216.0
SHD3_k127_2362889_1 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000009937 125.0
SHD3_k127_2362889_2 Histidine kinase - - - 0.00000000000000001493 96.0
SHD3_k127_2371181_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000001158 253.0
SHD3_k127_2371181_1 - - - - 0.00000001931 66.0
SHD3_k127_23719_0 Protein of unknown function (DUF2723) - - - 0.00000000000000000000000000001203 134.0
SHD3_k127_237269_0 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001082 415.0
SHD3_k127_237269_1 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000002143 140.0
SHD3_k127_2372874_0 General secretory system II protein E domain protein K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 497.0
SHD3_k127_2372874_1 PFAM type II secretion system K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002391 303.0
SHD3_k127_2372874_2 Belongs to the pseudouridine synthase RsuA family K06178,K06183 - 5.4.99.19,5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001894 274.0
SHD3_k127_2372874_3 Prokaryotic N-terminal methylation motif K02655 - - 0.00000000005485 70.0
SHD3_k127_2379799_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 402.0
SHD3_k127_2380823_0 ADP-glyceromanno-heptose 6-epimerase activity K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005053 319.0
SHD3_k127_2380823_1 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001543 288.0
SHD3_k127_2380823_2 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000000000000000000009319 216.0
SHD3_k127_2380823_3 methyltransferase - - - 0.000000000000000000000000000000000000000000000000001802 194.0
SHD3_k127_2380823_4 creatininase K01470 - 3.5.2.10 0.0000000000000000000000000003628 131.0
SHD3_k127_2385979_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 389.0
SHD3_k127_2385979_1 4Fe-4S binding domain K08358 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 331.0
SHD3_k127_2385979_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K04013,K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004134 265.0
SHD3_k127_2385979_3 KDPG and KHG aldolase - - - 0.00000000000000000000000000000000000007168 154.0
SHD3_k127_2385979_4 - - - - 0.00000000000000000000001001 101.0
SHD3_k127_2385979_5 cellulose binding - - - 0.000000001777 67.0
SHD3_k127_2394792_0 von Willebrand factor K07114 - - 0.000000000000000000002518 101.0
SHD3_k127_2405743_0 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003827 371.0
SHD3_k127_2405743_1 Belongs to the glycosyl hydrolase 13 family K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 326.0
SHD3_k127_2405743_2 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000006612 187.0
SHD3_k127_2405743_3 Tellurite resistance protein TehB - - - 0.00000000000000000000000000000000000000000000000007242 190.0
SHD3_k127_2405743_4 Ami_3 K01448 - 3.5.1.28 0.0001016 54.0
SHD3_k127_2411260_0 Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 452.0
SHD3_k127_2411260_1 TIGRFAM glutaminyl-tRNA synthetase K01886 - 6.1.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 407.0
SHD3_k127_2411260_2 epimerase - - - 0.0000000000000000000000000000000000000000000000000000001373 207.0
SHD3_k127_2415976_0 Putative zinc-binding metallo-peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 440.0
SHD3_k127_2415976_1 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004271 340.0
SHD3_k127_2415976_2 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000516 167.0
SHD3_k127_2422971_0 protein conserved in bacteria K11900 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007873 463.0
SHD3_k127_2422971_1 Type VI secretion system, VipA, VC_A0107 or Hcp2 K11901 - - 0.000000000000000000000000000000000000000000000000000000000676 205.0
SHD3_k127_2422971_2 Type VI secretion protein ImpA K11910 - - 0.00000000000000000000000000000000632 141.0
SHD3_k127_243127_0 metallopeptidase activity K03592 - - 0.000000000000000000000000000000000002387 152.0
SHD3_k127_2433128_0 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000797 362.0
SHD3_k127_2433128_1 YCII-related domain - - - 0.0000000000000000000000000000000000004194 144.0
SHD3_k127_2441406_0 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001062 623.0
SHD3_k127_2441406_1 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K16950 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003453 452.0
SHD3_k127_2441406_2 coenzyme F420 hydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000636 378.0
SHD3_k127_2441406_3 Belongs to the carbamoyltransferase HypF family K04656 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 357.0
SHD3_k127_2441406_4 2 iron, 2 sulfur cluster binding K02823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 336.0
SHD3_k127_2441406_5 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - - - 0.000000000000000000000000000000000000000000000006077 177.0
SHD3_k127_2455673_0 Propeptide_C25 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000213 263.0
SHD3_k127_2466222_0 Aldolase K01628 - 4.1.2.17 0.00000000000000000000000000000000000000000000000000000000004374 214.0
SHD3_k127_2466222_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 GO:0003674,GO:0003824,GO:0003908,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0009987,GO:0016020,GO:0016740,GO:0016741,GO:0032259,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051409,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.63 0.00000000000000000000000000000000000001087 153.0
SHD3_k127_2466222_2 peptidase dimerisation domain protein - - - 0.0002031 44.0
SHD3_k127_2472217_0 oligosaccharyl transferase activity - - - 0.00002915 57.0
SHD3_k127_2473997_0 PFAM Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 557.0
SHD3_k127_2473997_1 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 529.0
SHD3_k127_2473997_2 ATP-dependent DNA helicase activity K01144,K07464,K16898 - 3.1.11.5,3.1.12.1,3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001887 561.0
SHD3_k127_2473997_3 PFAM cytochrome bd ubiquinol oxidase subunit II K00426 - 1.10.3.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 382.0
SHD3_k127_2473997_4 exonuclease activity K16899 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 352.0
SHD3_k127_2473997_5 PPIC-type PPIASE domain K03769,K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000004389 177.0
SHD3_k127_2473997_6 Calcineurin-like phosphoesterase K07098 - - 0.00000000000000000000000000000000000000001216 164.0
SHD3_k127_2473997_7 - - - - 0.00000000000000000000000000000000003958 144.0
SHD3_k127_2478199_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 413.0
SHD3_k127_2478199_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 346.0
SHD3_k127_2478199_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000008727 274.0
SHD3_k127_2478199_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000005113 158.0
SHD3_k127_2478199_4 Preprotein translocase subunit K03210 - - 0.000000000000000002439 94.0
SHD3_k127_2478199_5 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000001837 71.0
SHD3_k127_2478202_0 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005882 402.0
SHD3_k127_2478202_1 Rhomboid family - - - 0.0000000000000000000000000000000000000000000000000000000000002193 221.0
SHD3_k127_2494435_0 - - - - 0.0001126 55.0
SHD3_k127_2494435_1 - - - - 0.0007832 52.0
SHD3_k127_2506410_0 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 375.0
SHD3_k127_2506410_1 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001571 273.0
SHD3_k127_2508162_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005077 537.0
SHD3_k127_2508162_1 NeuB family K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 434.0
SHD3_k127_2508162_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000001901 243.0
SHD3_k127_2508162_3 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000004061 172.0
SHD3_k127_2508162_4 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000002071 81.0
SHD3_k127_2509902_0 Glycolate oxidase subunit K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 531.0
SHD3_k127_2509902_1 Domain of unknown function (DUF4070) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003181 456.0
SHD3_k127_2509902_2 Cysteine-rich domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 374.0
SHD3_k127_2509902_3 FAD binding domain K11472 - - 0.000000000000000000000000000000000000000000000006281 196.0
SHD3_k127_2509902_4 epimerase K07071 - - 0.000000000301 62.0
SHD3_k127_252086_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 484.0
SHD3_k127_252086_1 6-phosphofructokinase activity K00850,K21071 - 2.7.1.11,2.7.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003793 460.0
SHD3_k127_252086_10 Ethylbenzene dehydrogenase - - - 0.0003106 53.0
SHD3_k127_252086_2 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405 451.0
SHD3_k127_252086_3 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 449.0
SHD3_k127_252086_4 TonB-dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001564 342.0
SHD3_k127_252086_5 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001065 265.0
SHD3_k127_252086_6 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000002551 206.0
SHD3_k127_252086_7 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000003262 177.0
SHD3_k127_252086_8 - - - - 0.000000000000000000000001427 119.0
SHD3_k127_25278_0 Acetyl-CoA hydrolase/transferase C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005977 555.0
SHD3_k127_25278_1 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 421.0
SHD3_k127_25278_2 alanine dehydrogenase activity K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 327.0
SHD3_k127_2531097_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 2.264e-258 810.0
SHD3_k127_2531097_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000049 258.0
SHD3_k127_2531097_2 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000001297 191.0
SHD3_k127_2533167_0 plastoquinone (Complex I) K12141 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 477.0
SHD3_k127_2533167_1 Hydrogenase 4 membrane K12140 - - 0.00000000000000000000000000000000000000000000002873 178.0
SHD3_k127_2545792_0 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00207,K12527,K17723 - 1.3.1.1,1.3.1.2,1.97.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 365.0
SHD3_k127_2545792_1 Belongs to the ATCase OTCase family - GO:0000050,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0019627,GO:0034641,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 327.0
SHD3_k127_2551279_0 HAD superfamily (subfamily IG) hydrolase 5'-Nucleotidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 409.0
SHD3_k127_2551279_1 Domain of unknown function (DUF4347) - - - 0.00000000000000000000000000000000000000000000000000000000000002551 232.0
SHD3_k127_2551279_2 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000000005203 109.0
SHD3_k127_2551279_3 extracellular matrix structural constituent - - - 0.000000001054 72.0
SHD3_k127_2551279_4 Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0001156 55.0
SHD3_k127_2553986_0 pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001712 359.0
SHD3_k127_2553986_1 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.00000000000000000000000000000000000000008564 164.0
SHD3_k127_2553986_2 - - - - 0.00000000000000000008398 99.0
SHD3_k127_2558466_0 NmrA-like family - - - 0.0000000000000000000000001201 115.0
SHD3_k127_2558466_1 RESPONSE REGULATOR receiver - - - 0.0005555 44.0
SHD3_k127_2567816_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 332.0
SHD3_k127_2567816_1 GHMP kinases C terminal K07031 - 2.7.1.168 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 318.0
SHD3_k127_2567816_2 tail specific protease - - - 0.0000000000000000000000000000000000000000000000000000000000005769 230.0
SHD3_k127_2577209_0 ABC transporter - - - 2.192e-258 807.0
SHD3_k127_2577209_1 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 0.0000000000000000000000000000000000000002032 157.0
SHD3_k127_2577209_2 PFAM Iron sulphur-containing domain, CDGSH-type - - - 0.00000000000000000001604 102.0
SHD3_k127_2584072_0 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009944 330.0
SHD3_k127_2584072_1 MATE efflux family protein - - - 0.0000000000000000000000000000000000000000000000000000000007885 213.0
SHD3_k127_2584072_2 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000001741 138.0
SHD3_k127_259972_0 Citrate synthase, C-terminal domain K01647 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 571.0
SHD3_k127_259972_1 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000002573 158.0
SHD3_k127_2604039_0 PFAM Auxin Efflux Carrier K07088 - - 0.000000000000000000000000000000000000000000001651 177.0
SHD3_k127_2604039_1 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.00000000000000000000000004831 112.0
SHD3_k127_2604039_2 Phosphatidylethanolamine-binding protein K06910 - - 0.000000001097 59.0
SHD3_k127_2607315_0 helicase involved in DNA repair and perhaps also replication K03722 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005615 342.0
SHD3_k127_2607315_1 Aromatic amino acid lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000001169 287.0
SHD3_k127_2609441_0 PAS fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001086 431.0
SHD3_k127_2616364_0 Transglycosylase - - - 0.0 1032.0
SHD3_k127_2616364_1 amino acid K03294 - - 0.000000000000000000000000197 114.0
SHD3_k127_2647123_0 PFAM amidohydrolase - - - 0.00000000000000000000000000000000000000000000000006973 184.0
SHD3_k127_2647123_1 domain, Protein - - - 0.00000000000000000000000000001776 125.0
SHD3_k127_2647123_2 Protein of unknown function (DUF433) - - - 0.000000000000000000000000073 109.0
SHD3_k127_2647123_3 Fibronectin type 3 domain - - - 0.00000000006106 71.0
SHD3_k127_2659291_0 Dehydrogenase E1 component K11381 - 1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003828 316.0
SHD3_k127_2659291_1 NUDIX domain K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002443 269.0
SHD3_k127_2663676_0 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000001223 222.0
SHD3_k127_2663676_1 Organic solvent ABC transporter ATP-binding protein K02065 - - 0.00000000000000000000000000000000000000000000000000000001055 216.0
SHD3_k127_2663676_2 PFAM Mammalian cell entry related domain protein K02067 - - 0.0000000000000000000000000000000000001403 159.0
SHD3_k127_2663676_3 methionine sulfoxide reductase K07305 - 1.8.4.12 0.000000000000005105 81.0
SHD3_k127_2680_0 ATPase associated with various cellular K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038 454.0
SHD3_k127_2680_1 Protein of unknown function DUF58 - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000006397 132.0
SHD3_k127_2680_4 6-phosphogluconolactonase activity - - - 0.000000000000003202 77.0
SHD3_k127_27105_0 OST-HTH/LOTUS domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007855 344.0
SHD3_k127_271474_0 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003028 256.0
SHD3_k127_271474_1 Phage late control gene D protein (GPD) K11904 - - 0.000000000000000000004804 94.0
SHD3_k127_271474_2 PucR C-terminal helix-turn-helix domain - - - 0.0006156 49.0
SHD3_k127_2731189_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000004495 205.0
SHD3_k127_2731189_1 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000002667 206.0
SHD3_k127_2767458_0 Amino acid permease - - - 3.284e-246 778.0
SHD3_k127_2767458_1 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 469.0
SHD3_k127_2767458_2 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005549 356.0
SHD3_k127_2767458_3 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 291.0
SHD3_k127_2767458_4 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179,K08941 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007048 272.0
SHD3_k127_2767458_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.0000000000000000000000000000000000000000000000000000001709 210.0
SHD3_k127_2769426_0 oligoendopeptidase F K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003333 568.0
SHD3_k127_2769426_1 Zn-dependent protease with chaperone function - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 324.0
SHD3_k127_2769426_2 Acid phosphatase homologues K19302 - 3.6.1.27 0.00000000000000000000000004284 117.0
SHD3_k127_2769426_3 - K01406 - 3.4.24.40 0.00000000003246 72.0
SHD3_k127_279323_0 Two component regulator propeller - - - 0.0000000000000000000000000000000000000000000003974 180.0
SHD3_k127_279323_1 peptidase activity, acting on L-amino acid peptides - - - 0.000001378 59.0
SHD3_k127_279323_2 domain protein - - - 0.00009106 46.0
SHD3_k127_2814396_0 protein conserved in bacteria K11896 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 542.0
SHD3_k127_2814396_1 C-terminal, D2-small domain, of ClpB protein K11907 - - 0.0000000000000000000000000000000000000000000001414 174.0
SHD3_k127_2814396_2 Type VI secretion, TssG K11895 - - 0.000000000000000000000000000000000000000000003818 188.0
SHD3_k127_2814396_3 TIGRFAM Type VI secretion system, lysozyme-related K11905 - - 0.00000000000000000000007819 102.0
SHD3_k127_2829441_0 PFAM aromatic amino acid beta-eliminating lyase threonine aldolase K01667,K01668 - 4.1.99.1,4.1.99.2 1.076e-207 652.0
SHD3_k127_2829441_1 Belongs to the metal hydrolase YfiT family - - - 0.00000000000000000000000000000000000000000000000000000000000000006643 226.0
SHD3_k127_2829441_2 Peptidase dimerisation domain K01295 - 3.4.17.11 0.0000000000000000000000000000009096 123.0
SHD3_k127_2862017_0 His Kinase A (phosphoacceptor) domain K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 375.0
SHD3_k127_2862017_1 peptide catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 387.0
SHD3_k127_2862017_2 Aldo/keto reductase family K05882 - 1.1.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000655 310.0
SHD3_k127_2862017_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 GO:0003674,GO:0003824,GO:0003887,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000002381 263.0
SHD3_k127_2862017_4 protein conserved in bacteria K09927 - - 0.000000000000000000000000000000000000000000000000000000001642 224.0
SHD3_k127_2862017_5 - - - - 0.00000000000000000000000000000000000000000000000004676 193.0
SHD3_k127_2862017_6 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000001383 179.0
SHD3_k127_2862017_7 PFAM Fibronectin type III domain - - - 0.00000000000000000000000000000000001082 150.0
SHD3_k127_2862017_8 - - - - 0.0000003267 55.0
SHD3_k127_2864360_0 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000008864 214.0
SHD3_k127_2864360_1 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine - - - 0.000000000000000000000000000000000000000000000000005676 190.0
SHD3_k127_2864360_2 Lamin Tail Domain K07004 - - 0.0000000000000000000000000000004873 136.0
SHD3_k127_2864360_3 Ethanolamine utilisation protein EutN/carboxysome K04028 GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0050896,GO:0051716 - 0.000000000000002414 80.0
SHD3_k127_2864360_4 Ethanolamine utilisation protein EutN/carboxysome - - - 0.00000002662 59.0
SHD3_k127_2864879_0 Domain of unknown function (DUF4186) - - - 0.000000000000000000000000000000000000000000000006666 173.0
SHD3_k127_2864879_1 Protein of unknown function (DUF523) K03783 - 2.4.2.1 0.00000000000000000000000000000000000000000001108 166.0
SHD3_k127_2864879_2 PFAM CoA-binding domain protein K06929 - - 0.00000000000000000000000000000000000000000001796 166.0
SHD3_k127_2864879_3 Domain of unknown function DUF302 - - - 0.00000000000000000000000000000000000004483 147.0
SHD3_k127_2864879_4 - - - - 0.000000000000000001956 87.0
SHD3_k127_2864879_5 PFAM 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.0000000000000002207 85.0
SHD3_k127_2864879_7 protease K07052 - - 0.000000222 62.0
SHD3_k127_2865222_0 Cytochrome C biogenesis protein transmembrane region K06196,K12267 - 1.8.4.11,1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000005817 259.0
SHD3_k127_2865222_1 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003829 256.0
SHD3_k127_2865222_2 Probable molybdopterin binding domain - - - 0.000000000000000000000000000000000000000000004901 173.0
SHD3_k127_2865222_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000009656 166.0
SHD3_k127_287119_0 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 385.0
SHD3_k127_287119_1 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008477 286.0
SHD3_k127_287119_2 Transmembrane secretion effector K08225 - - 0.00000000000000000000000000000000000000000000000000000000000000001488 233.0
SHD3_k127_2874636_0 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 511.0
SHD3_k127_2874636_1 Phospholipase D. Active site motifs. - - - 0.000000000000000000000000000003726 129.0
SHD3_k127_2875351_1 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008281 283.0
SHD3_k127_2875800_0 TIGRFAM hydrogenase expression formation protein HypE K04655 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005781 400.0
SHD3_k127_2875800_1 Belongs to the HypD family K04654 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 298.0
SHD3_k127_2875800_2 Domains REC, PAS, PAS, PP2C K07315 - 3.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000004304 250.0
SHD3_k127_2875800_3 Kelch repeat-containing protein - - - 0.00000001247 66.0
SHD3_k127_2876940_0 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 321.0
SHD3_k127_2876940_1 Mut7-C RNAse domain K09122 - - 0.000000000000000000000000000000002501 134.0
SHD3_k127_2876940_2 Glycosyl transferase WecB/TagA/CpsF family K05946 - 2.4.1.187 0.0000000000000000000000000000009095 127.0
SHD3_k127_2876940_3 PFAM EAL domain - - - 0.00000000000000000000005627 102.0
SHD3_k127_2876940_4 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.0000000000000003113 83.0
SHD3_k127_2876986_0 PFAM aminotransferase, class I K10907 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001602 508.0
SHD3_k127_2876986_1 Hydantoinaseoxoprolinase domain protein K01473 - 3.5.2.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 418.0
SHD3_k127_2876986_2 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007068 368.0
SHD3_k127_2876986_3 PFAM Peptidase M48 K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000001484 242.0
SHD3_k127_2876986_4 Ferritin-like domain K03594 - 1.16.3.1 0.000000000000000000000000000000000000000000000000000000001522 206.0
SHD3_k127_2877671_0 Putative modulator of DNA gyrase K03568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 323.0
SHD3_k127_2877671_1 TIGRFAM Caa(3)-type oxidase, subunit IV K02277 - 1.9.3.1 0.000000005114 58.0
SHD3_k127_2879782_0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S K00311 - 1.5.5.1 3.871e-195 623.0
SHD3_k127_2880655_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 319.0
SHD3_k127_2880655_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000004671 219.0
SHD3_k127_2880655_2 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000000005912 202.0
SHD3_k127_2880655_3 KaiB K08481 - - 0.000000000000000000000000000000004703 129.0
SHD3_k127_2891939_0 Ribosomal protein S1 K02945,K03527,K12132 GO:0005575,GO:0005576,GO:0018995,GO:0020003,GO:0030430,GO:0033643,GO:0033646,GO:0033655,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0044215,GO:0044216,GO:0044217,GO:0044421,GO:0065010 1.17.7.4,2.7.11.1 8.133e-224 710.0
SHD3_k127_2891939_1 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003367 364.0
SHD3_k127_2891939_2 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 319.0
SHD3_k127_2891939_3 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000005166 211.0
SHD3_k127_2891939_4 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000001422 200.0
SHD3_k127_2892975_0 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000002751 216.0
SHD3_k127_2892975_1 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07714 - - 0.0000000000000000000000000000000002789 138.0
SHD3_k127_2892975_2 PFAM CBS domain - - - 0.000000000000000000000000004403 118.0
SHD3_k127_2892975_3 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000001149 92.0
SHD3_k127_2893722_0 PFAM Tetratricopeptide - - - 0.00000000000004993 86.0
SHD3_k127_2895106_0 Protein of unknown function (DUF1326) - - - 0.00000000000000009622 89.0
SHD3_k127_2903405_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0000166,GO:0000175,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017076,GO:0019001,GO:0019222,GO:0019439,GO:0030312,GO:0030551,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034655,GO:0035438,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 2.809e-254 801.0
SHD3_k127_2903405_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 1.806e-205 664.0
SHD3_k127_2903405_10 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000001459 131.0
SHD3_k127_2903405_11 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000378 119.0
SHD3_k127_2903405_12 Required for maturation of 30S ribosomal subunits K09748 - - 0.00000000000000000000000001327 118.0
SHD3_k127_2903405_13 SprA protein - - - 0.0000000002654 74.0
SHD3_k127_2903405_14 Protein of unknown function (DUF503) K09764 - - 0.000000001545 65.0
SHD3_k127_2903405_2 Participates in both transcription termination and antitermination K02600 GO:0001000,GO:0001121,GO:0001125,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019904,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 419.0
SHD3_k127_2903405_3 PFAM peptidase M16 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003273 345.0
SHD3_k127_2903405_4 peptidyl-lysine modification to peptidyl-hypusine - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003443 308.0
SHD3_k127_2903405_5 Peptidase M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003033 278.0
SHD3_k127_2903405_6 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000001377 228.0
SHD3_k127_2903405_7 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000001894 195.0
SHD3_k127_2903405_8 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000001214 170.0
SHD3_k127_2903405_9 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000006134 171.0
SHD3_k127_2906933_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004159 379.0
SHD3_k127_2906933_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 297.0
SHD3_k127_2908895_0 PFAM Peptidase family M20 M25 M40 K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000002763 254.0
SHD3_k127_2908895_1 Belongs to the GcvT family K00605,K06980 - 2.1.2.10 0.0000000000000000000000000000000000000000004104 174.0
SHD3_k127_2908895_2 chromosome segregation K03497 - - 0.000002684 51.0
SHD3_k127_2911940_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1085.0
SHD3_k127_2912226_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1117.0
SHD3_k127_2912226_1 HlyD family secretion protein K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000161 442.0
SHD3_k127_2912226_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000002407 240.0
SHD3_k127_2912226_3 efflux transmembrane transporter activity K15725 - - 0.00000000000000000000000000000000000000000000000000000000002644 222.0
SHD3_k127_2912226_4 Deoxyhypusine synthase K00809 - 2.5.1.46 0.0000000000000000000000000000000004418 133.0
SHD3_k127_2912685_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 3.305e-301 956.0
SHD3_k127_2912685_1 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 - 3.4.21.26 5.42e-291 911.0
SHD3_k127_2912685_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 549.0
SHD3_k127_2912685_3 PFAM helicase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 495.0
SHD3_k127_2912685_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005547 265.0
SHD3_k127_2912685_5 tyrosine recombinase K03733,K04763 GO:0008150,GO:0040007 - 0.000000000000000000000000000000000000000000000000000000000000000000004697 259.0
SHD3_k127_2912685_6 Hsp33 protein K04083 - - 0.000000000000000000000000000000000000000000000003972 182.0
SHD3_k127_2912685_7 endonuclease activity K07451 - - 0.0000000000000000634 82.0
SHD3_k127_2912685_8 Tetratricopeptide repeat - - - 0.000000000004158 77.0
SHD3_k127_2912685_9 - - - - 0.0000000554 64.0
SHD3_k127_2913543_0 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008814 442.0
SHD3_k127_2913543_1 Domain of unknown function (DUF892) - - - 0.00000000000000000001844 94.0
SHD3_k127_2917589_0 PQQ enzyme repeat - - - 0.000000000002077 80.0
SHD3_k127_2918232_0 purine nucleobase transmembrane transporter activity K06901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001703 547.0
SHD3_k127_2918232_1 Vault protein inter-alpha-trypsin domain K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002404 434.0
SHD3_k127_2918232_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000402 203.0
SHD3_k127_2918232_3 mannose-1-phosphate guanylyltransferase activity K00971,K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000000000000001343 181.0
SHD3_k127_2918232_4 Belongs to the UPF0337 (CsbD) family - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000002801 94.0
SHD3_k127_2918232_5 MerR HTH family regulatory protein - - - 0.0000000000000001616 86.0
SHD3_k127_2918232_6 DNA-templated transcription, initiation K03088 - - 0.000000000001005 72.0
SHD3_k127_2919021_0 CHASE3 domain - - - 0.0 1088.0
SHD3_k127_2919021_1 CHASE3 domain - - - 0.0 1088.0
SHD3_k127_2919021_10 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000002633 199.0
SHD3_k127_2919021_11 CheB methylesterase K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000002633 199.0
SHD3_k127_2919021_12 Transglutaminase-like superfamily - - - 0.0000595 53.0
SHD3_k127_2919021_13 Transglutaminase-like superfamily - - - 0.0000595 53.0
SHD3_k127_2919021_2 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 424.0
SHD3_k127_2919021_3 Histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 424.0
SHD3_k127_2919021_4 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 386.0
SHD3_k127_2919021_5 Methyltransferase, chemotaxis proteins K00575 - 2.1.1.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004123 386.0
SHD3_k127_2919021_6 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 364.0
SHD3_k127_2919021_7 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 364.0
SHD3_k127_2919021_8 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000009776 228.0
SHD3_k127_2919021_9 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000009776 228.0
SHD3_k127_2923287_0 Transport of potassium into the cell K03549 - - 5.852e-203 642.0
SHD3_k127_2923287_1 Transmembrane secretion effector K08225 - - 0.0000000000000000000000000004383 117.0
SHD3_k127_2925523_0 WD40-like Beta Propeller Repeat - - - 2.253e-215 688.0
SHD3_k127_2925523_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308 553.0
SHD3_k127_2925523_2 Peptidase S9, prolyl oligopeptidase active site domain protein K01322 - 3.4.21.26 0.0000000000000000000929 94.0
SHD3_k127_2931732_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000792 327.0
SHD3_k127_2931732_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 303.0
SHD3_k127_2936934_0 actin binding - - - 0.000000000000000000000005854 107.0
SHD3_k127_2936934_1 Galactose oxidase, central domain - - - 0.00007542 55.0
SHD3_k127_2938123_0 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000113 177.0
SHD3_k127_2938123_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.0000000000000000000000000000000000000002088 160.0
SHD3_k127_2947448_0 cystathionine gamma-synthase activity K01758,K01760,K01761 - 4.4.1.1,4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002901 469.0
SHD3_k127_2947448_1 NAD(P)H quinone oxidoreductase, PIG3 family K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001202 344.0
SHD3_k127_2947448_2 C-terminal domain of 1-Cys peroxiredoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 329.0
SHD3_k127_2947448_3 Radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007644 247.0
SHD3_k127_2947448_5 COG0694 Thioredoxin-like proteins and domains - - - 0.0000000000000000000000000006985 116.0
SHD3_k127_2947448_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000003143 109.0
SHD3_k127_2949052_0 glycosyl transferase family K00697,K16055 - 2.4.1.15,2.4.1.347,3.1.3.12 1.173e-256 811.0
SHD3_k127_2949052_1 Glycosyl hydrolases family 15 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008476 439.0
SHD3_k127_2949052_2 Family of unknown function (DUF1028) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 353.0
SHD3_k127_2949052_3 Polysaccharide lyase family 4, domain II - - - 0.0001924 49.0
SHD3_k127_2952658_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138,K18307 - - 0.0 1465.0
SHD3_k127_2952658_1 PFAM Zinc carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005438 572.0
SHD3_k127_2952658_10 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007525 292.0
SHD3_k127_2952658_11 phosphoserine phosphatase activity K01768,K07315 - 3.1.3.3,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000001188 273.0
SHD3_k127_2952658_12 cyclopropane-fatty-acyl-phospholipid synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006198 265.0
SHD3_k127_2952658_13 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000004603 233.0
SHD3_k127_2952658_14 Belongs to the MraZ family K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000005789 99.0
SHD3_k127_2952658_16 glycosyl transferase family - - - 0.00001035 55.0
SHD3_k127_2952658_2 Prolyl oligopeptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001753 597.0
SHD3_k127_2952658_3 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 445.0
SHD3_k127_2952658_4 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004656 413.0
SHD3_k127_2952658_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 399.0
SHD3_k127_2952658_6 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000388 407.0
SHD3_k127_2952658_7 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 383.0
SHD3_k127_2952658_8 Glucokinase K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 297.0
SHD3_k127_2952658_9 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000665 294.0
SHD3_k127_2958958_0 Glycosyl hydrolase 36 superfamily, catalytic domain - - - 1.217e-268 849.0
SHD3_k127_2958958_1 COG2723 Beta-glucosidase 6-phospho-beta-glucosidase beta- galactosidase K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 538.0
SHD3_k127_2959410_0 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0 1156.0
SHD3_k127_2959410_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.4.1.2,1.4.1.3,1.4.1.4 5.204e-217 679.0
SHD3_k127_2959410_2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000617 572.0
SHD3_k127_2959410_3 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 339.0
SHD3_k127_2959410_4 metallophosphoesterase K07096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 304.0
SHD3_k127_2959410_5 Domain of unknown function (DUF4440) - - - 0.00000000000006029 77.0
SHD3_k127_2962128_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000008032 239.0
SHD3_k127_2962128_1 endonuclease activity K07451 - - 0.000000000000000000000000001275 119.0
SHD3_k127_2962832_0 Predicted membrane protein (DUF2207) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009732 418.0
SHD3_k127_2962832_1 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000001042 136.0
SHD3_k127_2962832_2 - - - - 0.0000000000000000000000000000002212 129.0
SHD3_k127_2962832_3 Subtilase family - - - 0.0000000000000000001679 98.0
SHD3_k127_2965931_0 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009814 379.0
SHD3_k127_2965931_1 PQQ enzyme repeat - - - 0.0000000000000001996 93.0
SHD3_k127_2965931_2 Transglycosylase - - - 0.0001344 46.0
SHD3_k127_2968909_0 response regulator K13599 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003433 429.0
SHD3_k127_2968909_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 305.0
SHD3_k127_2968909_2 transcription factor binding K02584,K11914 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 321.0
SHD3_k127_2968909_3 cellulase activity K06882 - - 0.0000000000000000000000000000000000000000000000000000000001501 215.0
SHD3_k127_2968909_4 Histidine kinase K13598 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000006238 223.0
SHD3_k127_2968909_5 PFAM AAA ATPase central domain protein - - - 0.0000000000000000000000000000000000000000000003472 185.0
SHD3_k127_2968909_6 Ppx GppA K01524 - 3.6.1.11,3.6.1.40 0.000000000000000000000000000000000000001224 160.0
SHD3_k127_2968909_7 Immune inhibitor A peptidase M6 - - - 0.00000000000000000001536 103.0
SHD3_k127_2968909_8 cell adhesion involved in biofilm formation - - - 0.00000000000000000007914 98.0
SHD3_k127_2968909_9 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.000000001202 65.0
SHD3_k127_2973410_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 535.0
SHD3_k127_2973410_1 Chromate transporter K07240 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004067 336.0
SHD3_k127_2973410_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002259 276.0
SHD3_k127_2973410_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00003452 55.0
SHD3_k127_2980506_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 446.0
SHD3_k127_2980506_1 Transcriptional regulatory protein, C terminal - - - 0.00000001712 57.0
SHD3_k127_2987831_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 367.0
SHD3_k127_2987831_1 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000115 283.0
SHD3_k127_2987831_2 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000001049 265.0
SHD3_k127_2987831_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000001322 63.0
SHD3_k127_2990599_0 Alpha-glucan phosphorylase K00688 - 2.4.1.1 3.106e-314 983.0
SHD3_k127_2990599_1 PFAM PKD domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000001565 235.0
SHD3_k127_2992659_0 Vitamin B12 dependent methionine synthase, activation K00548 - 2.1.1.13 1.081e-212 674.0
SHD3_k127_2993406_0 AIR synthase related protein, N-terminal domain K01933,K11788 GO:0003674,GO:0003824,GO:0004641,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016882,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.3.1,6.3.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 313.0
SHD3_k127_2993406_1 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007551 278.0
SHD3_k127_2993406_2 HD domain - - - 0.00000000000000000000000000000000000006654 148.0
SHD3_k127_3007036_0 Two component, sigma54 specific, transcriptional regulator, Fis family K07714 - - 0.0000000000000000000000000000000000004904 145.0
SHD3_k127_3007036_1 Tetratricopeptide repeat - - - 0.0003775 53.0
SHD3_k127_3010338_0 protein conserved in bacteria K11893 - - 0.000000000000000000000000000000000000000003463 166.0
SHD3_k127_3010338_1 - - - - 0.0000000000004678 83.0
SHD3_k127_3010957_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000001811 247.0
SHD3_k127_3010957_1 glutamine synthetase K01915 - 6.3.1.2 0.000000000000000000000000000000002476 139.0
SHD3_k127_3010957_2 lipolytic protein G-D-S-L family - - - 0.0000000000006926 79.0
SHD3_k127_3012029_0 Domains REC, sigma54 interaction, HTH8 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002618 385.0
SHD3_k127_3012029_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000003512 220.0
SHD3_k127_3014043_0 MotA/TolQ/ExbB proton channel family K02556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007303 262.0
SHD3_k127_3014043_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000004433 207.0
SHD3_k127_3014043_2 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.00000000000000000000000000000000000000000000000000000005919 203.0
SHD3_k127_3017858_0 Bacterial Ig-like domain (group 3) - - - 0.000000000000000000000000000000005402 148.0
SHD3_k127_3017858_1 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.0000000000000000000002047 113.0
SHD3_k127_3019537_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 1.321e-236 765.0
SHD3_k127_3019537_1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg K00174 - 1.2.7.11,1.2.7.3 1.28e-199 641.0
SHD3_k127_3019537_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002444 443.0
SHD3_k127_3022087_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.5 0.0 1094.0
SHD3_k127_3022087_1 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 349.0
SHD3_k127_3022087_2 Responsible for synthesis of pseudouridine from uracil K06177,K06180 GO:0000027,GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022607,GO:0022613,GO:0022618,GO:0031118,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360 5.4.99.23,5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000000000001335 252.0
SHD3_k127_3022087_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000001705 240.0
SHD3_k127_3022087_4 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000000000000000000002357 141.0
SHD3_k127_3022087_5 STAS domain K04749 - - 0.0000000000000000000000002958 108.0
SHD3_k127_3022087_6 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 3.4.23.36 0.00000000000000000000008853 108.0
SHD3_k127_3022087_7 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000001366 98.0
SHD3_k127_3022087_8 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04757 - 2.7.11.1 0.00000000000000001729 93.0
SHD3_k127_3022087_9 Belongs to the UPF0235 family K09131 - - 0.00000000000000005698 85.0
SHD3_k127_3027195_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 GO:0003674,GO:0003824,GO:0003938,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 1.1.1.205 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 608.0
SHD3_k127_3027195_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000268 389.0
SHD3_k127_3029166_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006455 314.0
SHD3_k127_3029166_1 TIGRFAM TonB family protein K03832 - - 0.000000001289 69.0
SHD3_k127_3048701_0 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 334.0
SHD3_k127_3050148_0 Cation transporting ATPase, C-terminus K01537 - 3.6.3.8 1.006e-199 638.0
SHD3_k127_3050148_1 COG2207 AraC-type DNA-binding domain-containing proteins - - - 0.00000000000004946 73.0
SHD3_k127_305363_0 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000000000001406 205.0
SHD3_k127_305363_1 - - - - 0.000000000000000000000000000000000000000004134 161.0
SHD3_k127_305363_2 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000001479 116.0
SHD3_k127_305363_3 Fumarate reductase, iron-sulfur protein K00240,K00245 - 1.3.5.1,1.3.5.4 0.0005016 42.0
SHD3_k127_3063426_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 306.0
SHD3_k127_3063426_1 MazG nucleotide pyrophosphohydrolase domain K04765 - 3.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000008584 230.0
SHD3_k127_3066185_0 two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005686 578.0
SHD3_k127_3066185_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 580.0
SHD3_k127_3066185_2 Polysulphide reductase, NrfD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002321 370.0
SHD3_k127_3071294_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000001243 244.0
SHD3_k127_3071294_1 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000006281 184.0
SHD3_k127_3071294_2 protein transport K03118 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 - 0.00000000000000000000000000000000002467 146.0
SHD3_k127_3071294_3 Thioredoxin - - - 0.000000000000000000000001033 116.0
SHD3_k127_3071294_4 Thioredoxin - - - 0.00000000000000000002296 105.0
SHD3_k127_3071294_5 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K12276 - - 0.00001655 49.0
SHD3_k127_3077014_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 566.0
SHD3_k127_3077014_1 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 471.0
SHD3_k127_3077014_2 Integral membrane protein TerC family K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 363.0
SHD3_k127_3077772_0 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000001156 187.0
SHD3_k127_3077772_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000009604 163.0
SHD3_k127_3077772_2 Tetratricopeptide repeat - - - 0.0000000000000005241 91.0
SHD3_k127_3077772_3 CUB and sushi K17495 - - 0.00002678 49.0
SHD3_k127_3080375_0 NADH flavin oxidoreductase K10680 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 403.0
SHD3_k127_3093680_0 adenosylhomocysteinase activity K01251 - 3.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 607.0
SHD3_k127_3093680_1 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000001728 250.0
SHD3_k127_3093680_2 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000428 212.0
SHD3_k127_311293_0 PrkA AAA domain K07180 - - 0.0 1043.0
SHD3_k127_311293_1 PFAM SpoVR like protein K06415 - - 6.102e-203 657.0
SHD3_k127_311293_10 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000004377 125.0
SHD3_k127_311293_11 Belongs to the sulfur carrier protein TusA family K04085 - - 0.00000000000005711 74.0
SHD3_k127_311293_2 Belongs to the UPF0229 family K09786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 515.0
SHD3_k127_311293_3 AcrB/AcrD/AcrF family K07787,K15726 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004601 391.0
SHD3_k127_311293_4 Threonine alanine tRNA ligase second additional domain protein K01872 - 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 321.0
SHD3_k127_311293_5 PFAM GTP cyclohydrolase I K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000002227 249.0
SHD3_k127_311293_6 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000008073 175.0
SHD3_k127_311293_7 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.000000000000000000000000000000000000000008363 159.0
SHD3_k127_311293_8 Hit family K02503 - - 0.00000000000000000000000000000000000000001735 156.0
SHD3_k127_311293_9 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000009631 157.0
SHD3_k127_3113682_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 465.0
SHD3_k127_3113682_1 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003101 401.0
SHD3_k127_3117275_0 Transketolase, pyrimidine binding domain K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 437.0
SHD3_k127_3117275_1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008088 398.0
SHD3_k127_3117275_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000006179 180.0
SHD3_k127_3117275_3 PFAM dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.00000000000000000000000000000000000000000000009371 174.0
SHD3_k127_3118381_0 Cytochrome b subunit of the bc complex K00412 - - 0.000000000000000001626 94.0
SHD3_k127_3120575_0 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001711 273.0
SHD3_k127_3120575_1 Glucose dehydrogenase C-terminus - - - 0.000000000000000000000000000000000000000000000000000000000004215 214.0
SHD3_k127_3120575_2 peptidyl-tyrosine sulfation K13992 - - 0.00000000000000000000000000000000000000000000001069 182.0
SHD3_k127_3120575_3 stage II sporulation K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000001131 190.0
SHD3_k127_3120575_4 Signal transduction protein - - - 0.00000000000000000000000000000006804 139.0
SHD3_k127_3120575_5 Periplasmic component of the Tol biopolymer transport system - - - 0.000002795 59.0
SHD3_k127_3123617_0 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 562.0
SHD3_k127_3139116_0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000009021 249.0
SHD3_k127_3139116_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000002628 236.0
SHD3_k127_3139116_2 NADH dehydrogenase (ubiquinone) activity K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0050136,GO:0055114,GO:0098796,GO:1902494 1.6.5.3 0.000000000000000000000000000000000000008692 161.0
SHD3_k127_3139116_3 PFAM pentapeptide repeat protein - - - 0.0000000000000000003776 102.0
SHD3_k127_3140816_0 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00207,K12527,K17723 - 1.3.1.1,1.3.1.2,1.97.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 328.0
SHD3_k127_3142209_0 Alcohol dehydrogenase GroES-associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 563.0
SHD3_k127_3142209_1 DNA polymerase K02337,K14162 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008395 527.0
SHD3_k127_3142209_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000133 298.0
SHD3_k127_3142209_3 Cyclase dehydrase - - - 0.0000000000000000000000000000000000000000000000000000000000001904 223.0
SHD3_k127_3142209_4 Pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000002819 159.0
SHD3_k127_3142209_5 PFAM Glycosyl hydrolase family 32 domain protein K03332 - 3.2.1.80 0.0000008417 60.0
SHD3_k127_3144887_0 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 412.0
SHD3_k127_3159846_0 isomerase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 320.0
SHD3_k127_3159846_1 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.000000000004829 69.0
SHD3_k127_3164633_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.0 1015.0
SHD3_k127_3164633_1 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02372,K02535,K13599,K16363 GO:0003674,GO:0003824,GO:0016829,GO:0016835,GO:0016836,GO:0019171 3.5.1.108,4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004332 441.0
SHD3_k127_3164633_10 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000002602 65.0
SHD3_k127_3164633_2 Surface antigen K07277 GO:0005575,GO:0005623,GO:0008104,GO:0008150,GO:0009279,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022607,GO:0030312,GO:0030313,GO:0031224,GO:0031230,GO:0031241,GO:0031246,GO:0031975,GO:0032991,GO:0033036,GO:0034613,GO:0043163,GO:0043165,GO:0044085,GO:0044091,GO:0044425,GO:0044462,GO:0044464,GO:0045184,GO:0045229,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0061024,GO:0070727,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0090150,GO:0098552,GO:0098796,GO:1990063 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 411.0
SHD3_k127_3164633_3 Catalyzes the specific phosphorylation of arginine residues in proteins K19405 - 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 340.0
SHD3_k127_3164633_4 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 311.0
SHD3_k127_3164633_5 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 297.0
SHD3_k127_3164633_6 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0019637,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.4.1.182 0.00000000000000000000000000000000000000000000000000000000000000000000000001114 275.0
SHD3_k127_3164633_7 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000002851 227.0
SHD3_k127_3164633_8 protein with conserved CXXC pairs K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 - 0.000000000000000000000000000000002661 136.0
SHD3_k127_3164633_9 ABC transporter K02003 - - 0.0000000000005695 70.0
SHD3_k127_3177127_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004229 471.0
SHD3_k127_3177127_1 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 297.0
SHD3_k127_3177127_2 transmembrane signaling receptor activity - - - 0.000000000000000000000004838 112.0
SHD3_k127_3177127_3 FlgD Ig-like domain K15924 - 3.2.1.136 0.00000000005829 77.0
SHD3_k127_3177127_4 Matrix metallopeptidase 8 K01388,K01394,K01402,K07763,K07994,K07999 GO:0001503,GO:0001704,GO:0001706,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0007369,GO:0007492,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0008270,GO:0009056,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0016787,GO:0017171,GO:0019538,GO:0022411,GO:0022617,GO:0030141,GO:0030154,GO:0030198,GO:0030574,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032963,GO:0034774,GO:0035580,GO:0035987,GO:0036230,GO:0042119,GO:0042581,GO:0043062,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044238,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046872,GO:0046903,GO:0046914,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070011,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0097708,GO:0099503,GO:0140096,GO:1901564,GO:1904724 3.4.24.17,3.4.24.34,3.4.24.7,3.4.24.80 0.0000000001011 76.0
SHD3_k127_3182157_0 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000004394 180.0
SHD3_k127_3182157_1 Polynucleotide kinase 3 phosphatase K03273 - 3.1.3.82,3.1.3.83 0.0000000002234 72.0
SHD3_k127_3182157_2 Tetratricopeptide repeat - - - 0.000005316 56.0
SHD3_k127_3200068_0 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 363.0
SHD3_k127_3200068_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 313.0
SHD3_k127_3200068_2 - - - - 0.000000000000000000000000000000000000000000000000000000003259 208.0
SHD3_k127_3200068_3 - - - - 0.0000000000000000000000000000000000000000000004653 177.0
SHD3_k127_320430_0 electron transfer flavoprotein, alpha subunit K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 310.0
SHD3_k127_320430_1 Metal dependent phosphohydrolases with conserved 'HD' motif. K03698 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002158 264.0
SHD3_k127_320430_2 Electron transfer flavoprotein domain K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000002137 229.0
SHD3_k127_320430_3 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000001464 170.0
SHD3_k127_320430_4 intramolecular transferase activity, transferring amino groups K01845 - 5.4.3.8 0.00000000000000000000000006582 108.0
SHD3_k127_3205150_0 TIGRFAM methylmalonyl-CoA mutase N-terminal domain K01848 - 5.4.99.2 2.772e-236 747.0
SHD3_k127_3205150_1 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003681 438.0
SHD3_k127_3205150_2 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 316.0
SHD3_k127_3205150_3 Coenzyme A transferase K01029,K01035 - 2.8.3.5,2.8.3.8,2.8.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 295.0
SHD3_k127_3205150_4 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001741 273.0
SHD3_k127_3205150_5 B12 binding domain K01849 - 5.4.99.2 0.00000000000000000000000000000000000000000000000000000000000887 209.0
SHD3_k127_3205150_6 - - - - 0.00000000000002369 74.0
SHD3_k127_3205150_8 COG0457 FOG TPR repeat - - - 0.000843 52.0
SHD3_k127_3209342_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005033 280.0
SHD3_k127_3209342_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.0000000000000000000000000000000000000000000000001538 181.0
SHD3_k127_3209342_2 Domain of unknown function (DUF1844) - - - 0.0000004448 58.0
SHD3_k127_3210174_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000001603 238.0
SHD3_k127_3210174_1 Acylphosphatase K01512 - 3.6.1.7 0.000000000000000001162 90.0
SHD3_k127_3210174_2 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.000000000001281 69.0
SHD3_k127_3210174_3 Alpha/beta hydrolase family K06889 - - 0.0000002234 52.0
SHD3_k127_3228596_0 Domain of unknown function (DUF305) - - - 0.00000000000000000000000000000000224 141.0
SHD3_k127_3228596_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000005518 64.0
SHD3_k127_3228596_2 Heavy metal transport detoxification protein - - - 0.00007302 46.0
SHD3_k127_3233492_0 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000000000000000000000000000000000000001115 172.0
SHD3_k127_3246779_0 YbbR-like protein - - - 0.000000000000004217 83.0
SHD3_k127_3260520_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 427.0
SHD3_k127_3260520_1 - - - - 0.000000000000000000000000000000003518 130.0
SHD3_k127_3260520_2 Protein of unknown function (DUF433) - - - 0.00000000000000000000004889 99.0
SHD3_k127_3260520_3 TIGRFAM glutamate formiminotransferase K00603,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000001888 97.0
SHD3_k127_326682_1 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000003932 102.0
SHD3_k127_3284875_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261,K00262 - 1.4.1.3,1.4.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 479.0
SHD3_k127_3284875_1 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.00000000001765 70.0
SHD3_k127_3285242_0 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005641 261.0
SHD3_k127_329554_0 PFAM aspartate glutamate uridylate kinase K12524 - 1.1.1.3,2.7.2.4 5.342e-199 651.0
SHD3_k127_329554_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005455 508.0
SHD3_k127_329554_2 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003356 391.0
SHD3_k127_329554_3 Methyl-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001728 274.0
SHD3_k127_329554_4 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000001425 267.0
SHD3_k127_329554_5 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000001164 165.0
SHD3_k127_3302435_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000001938 162.0
SHD3_k127_331267_0 PBS lyase HEAT-like repeat - - - 0.00001989 57.0
SHD3_k127_3323636_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002114 380.0
SHD3_k127_3323636_1 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 309.0
SHD3_k127_3323636_2 ABC-2 family transporter protein - - - 0.000000000000000000000000000000000000000000000000000000000000000006511 235.0
SHD3_k127_3323636_3 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000003203 158.0
SHD3_k127_3323636_4 AntiSigma factor - - - 0.0000000000000000000001654 109.0
SHD3_k127_3323636_5 Glycosyl transferases group 1 - - - 0.000000000000000001559 88.0
SHD3_k127_3329401_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001296 480.0
SHD3_k127_3329401_1 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000000000000000000000000000004544 231.0
SHD3_k127_3329401_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000005652 215.0
SHD3_k127_3329401_3 Virulence factor BrkB K07058 - - 0.0000000007293 61.0
SHD3_k127_335322_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07799 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000582 289.0
SHD3_k127_335322_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07788 - - 0.000000000000000000000000000000000000000000001846 170.0
SHD3_k127_3362900_0 TIGRFAM glutamate synthase (NADPH), homotetrameric K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003067 605.0
SHD3_k127_3362900_1 PFAM oxidoreductase FAD NAD(P)-binding domain protein K00528 - 1.18.1.2,1.19.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 314.0
SHD3_k127_3381658_0 Putative adhesin - - - 0.00000000000000000000000000000000000000000000000000000000000000000001891 246.0
SHD3_k127_3381658_1 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0002758 45.0
SHD3_k127_3383709_0 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 320.0
SHD3_k127_3383709_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.00000000000000000000000000000000000000000000000000006628 197.0
SHD3_k127_3383709_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000002281 130.0
SHD3_k127_339712_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient - - - 5.794e-287 895.0
SHD3_k127_339712_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000007689 231.0
SHD3_k127_339712_2 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000007075 176.0
SHD3_k127_339712_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.0000000000000000000000000000000001032 134.0
SHD3_k127_340796_0 Alanine dehydrogenase/PNT, C-terminal domain K07538 - 1.1.1.368 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005046 346.0
SHD3_k127_340796_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 321.0
SHD3_k127_34366_0 PFAM Peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001514 287.0
SHD3_k127_34366_1 PolyA polymerase K00974 - 2.7.7.72 0.00000000000000000000000000000000000000000000114 171.0
SHD3_k127_3456073_0 PEP-utilising enzyme, mobile domain K01006 - 2.7.9.1 2.201e-194 617.0
SHD3_k127_3456073_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K16792 - 4.2.1.114 0.000000009088 59.0
SHD3_k127_3457200_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002359 454.0
SHD3_k127_3457200_1 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000003651 218.0
SHD3_k127_3471033_0 Mitochondrial biogenesis AIM24 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 417.0
SHD3_k127_3471033_1 SNF2 family N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 329.0
SHD3_k127_3471033_2 domain protein - - - 0.0000000000000000000000000000000000000000000000000005019 213.0
SHD3_k127_3471033_3 Sterol carrier protein domain - - - 0.00000000000000000000000000000000001446 140.0
SHD3_k127_3471033_4 SMART Immunoglobulin C2 type - - - 0.0000000000000000000000000000002752 144.0
SHD3_k127_3471033_5 metallocarboxypeptidase activity - - - 0.000000000001239 83.0
SHD3_k127_348686_0 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000993 392.0
SHD3_k127_348686_1 dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000003218 192.0
SHD3_k127_348686_2 Lysylphosphatidylglycerol synthase TM region - - - 0.0000000000000000000000000000000000000000000000003976 192.0
SHD3_k127_348686_3 Polysaccharide deacetylase K22278 - 3.5.1.104 0.000000000000000000000000000000000000000000000002284 182.0
SHD3_k127_348686_4 S1 P1 nuclease - - - 0.0000000000000000000000000000000002506 140.0
SHD3_k127_3521578_0 MreB/Mbl protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 458.0
SHD3_k127_3521578_1 Penicillin-binding protein 2 K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008607 406.0
SHD3_k127_3521578_2 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000001563 169.0
SHD3_k127_3521578_3 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000002018 125.0
SHD3_k127_3521578_4 (Rhomboid) family K07059 - - 0.000000000000000000008792 106.0
SHD3_k127_3521578_5 shape-determining protein MreD K03571 - - 0.0000000003503 67.0
SHD3_k127_354483_0 Oligopeptidase F K08602 - - 1.704e-239 755.0
SHD3_k127_354483_1 glutamate decarboxylase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 485.0
SHD3_k127_3548929_0 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005674 374.0
SHD3_k127_3548929_1 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 299.0
SHD3_k127_3548929_2 Pyridoxal-phosphate dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005078 292.0
SHD3_k127_3548929_3 Amidohydrolase family - - - 0.00001405 48.0
SHD3_k127_355051_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 440.0
SHD3_k127_355051_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004364 353.0
SHD3_k127_355051_2 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000735 351.0
SHD3_k127_355051_3 SpoIVB peptidase S55 K00973,K02414,K21449 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001165 302.0
SHD3_k127_355051_4 metal-dependent hydrolase with the TIM-barrel fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007626 256.0
SHD3_k127_355051_5 carboxylic acid catabolic process - - - 0.00000000000000000000000000000000000000000007054 170.0
SHD3_k127_355051_6 3-demethylubiquinone-9 3-O-methyltransferase activity K20444 - - 0.0000000000000000000000000000000000000000002383 167.0
SHD3_k127_355051_7 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.000000000000000000000000000000000000000001521 172.0
SHD3_k127_355051_8 TPR repeat - - - 0.0000000000000000001982 98.0
SHD3_k127_355051_9 Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) K02549 - 4.2.1.113 0.000000000000004185 79.0
SHD3_k127_3557415_0 Oxidoreductase molybdopterin binding domain - - - 0.00000000000000000000000000000001112 145.0
SHD3_k127_3557415_1 - K20326 - - 0.00000000000007671 80.0
SHD3_k127_3557415_2 Cytochrome c K03889 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.000004446 59.0
SHD3_k127_355973_0 Permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000688 495.0
SHD3_k127_355973_1 Serine aminopeptidase, S33 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 329.0
SHD3_k127_355973_2 serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000001241 223.0
SHD3_k127_355973_3 redox-active disulfide protein 2 - - - 0.00000000000000000000000005507 109.0
SHD3_k127_355973_4 Cytochrome C biogenesis protein - - - 0.00000000000000000000000289 108.0
SHD3_k127_355973_5 SMART regulatory protein ArsR - - - 0.00000000000000000000008388 105.0
SHD3_k127_355973_6 COG0526, thiol-disulfide isomerase and thioredoxins K02199 - - 0.0000000000000000000006169 111.0
SHD3_k127_356292_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000001002 100.0
SHD3_k127_356292_2 domain, Protein - - - 0.00005225 56.0
SHD3_k127_3578255_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 5.979e-266 842.0
SHD3_k127_3578255_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.306e-241 774.0
SHD3_k127_3585460_0 xyloglucan:xyloglucosyl transferase activity K01216,K07004 - 3.2.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049 424.0
SHD3_k127_3585460_1 ROK family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005815 414.0
SHD3_k127_3585460_2 Extradiol ring-cleavage dioxygenase K15777 - - 0.0000000000000000000000000000000158 131.0
SHD3_k127_3590542_0 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000066 441.0
SHD3_k127_3590542_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009572 395.0
SHD3_k127_3590542_2 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000004085 202.0
SHD3_k127_3590542_3 domain, Protein K20276 - - 0.0000000000000000000000000000000000000000000000003968 190.0
SHD3_k127_3590542_4 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K11177 - 1.17.1.4 0.000000000000000000000000000000000000007354 146.0
SHD3_k127_3590542_5 Periplasmic binding protein K01999 - - 0.00000000000000000000000002176 126.0
SHD3_k127_3590542_6 - - - - 0.000000000000000000000141 106.0
SHD3_k127_3590542_7 peptidase activity, acting on L-amino acid peptides - - - 0.0000000002518 74.0
SHD3_k127_3590542_8 - - - - 0.000000005062 70.0
SHD3_k127_3592012_0 radical SAM domain protein - - - 3.343e-216 684.0
SHD3_k127_3592012_1 membrane K07148 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 559.0
SHD3_k127_3592012_2 prohibitin homologues - GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007443 269.0
SHD3_k127_3592012_3 PFAM peptidase M20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007039 259.0
SHD3_k127_3592012_4 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000131 256.0
SHD3_k127_3592012_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000004354 246.0
SHD3_k127_3592012_6 Cold shock K03704 - - 0.00000000000000000000000000004068 121.0
SHD3_k127_3592012_7 NfeD-like C-terminal, partner-binding K07403 - - 0.0000004963 58.0
SHD3_k127_3592012_8 Two component regulator propeller - - - 0.0003194 52.0
SHD3_k127_3593175_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 404.0
SHD3_k127_3593175_1 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006496 333.0
SHD3_k127_3593175_2 Carbamoyltransferase C-terminus K00612 - - 0.000000000001195 77.0
SHD3_k127_3593175_3 - - - - 0.000000000005774 78.0
SHD3_k127_3596765_0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 2.091e-256 803.0
SHD3_k127_3596765_1 PQQ-like domain K05889 - 1.1.2.6 0.0000000000000005065 89.0
SHD3_k127_3596765_2 YceI-like domain - - - 0.000000395 61.0
SHD3_k127_3602392_0 Involved in the biosynthesis of porphyrin-containing compound K02495 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006782,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016627,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0046501,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0051989,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 1.3.98.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006561 492.0
SHD3_k127_3602392_1 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 352.0
SHD3_k127_3602392_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 329.0
SHD3_k127_3602392_3 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000001231 242.0
SHD3_k127_3604054_0 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009545 259.0
SHD3_k127_3604054_1 denitrification pathway - GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016491,GO:0019645,GO:0022900,GO:0022904,GO:0044237,GO:0045333,GO:0055114 - 0.00000000000000000000000000000000000000000000000000000000000000008937 230.0
SHD3_k127_3604507_0 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 367.0
SHD3_k127_3604507_1 - - - - 0.0000000000000000000000000000000000000000000000006138 179.0
SHD3_k127_3609554_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001565 412.0
SHD3_k127_3609554_1 polysaccharide catabolic process K01179,K01218 - 3.2.1.4,3.2.1.78 0.0000000000000008963 93.0
SHD3_k127_3612205_0 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000004431 147.0
SHD3_k127_3614088_0 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 545.0
SHD3_k127_3616653_0 Arginosuccinate synthase K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 374.0
SHD3_k127_3616653_1 PFAM aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 320.0
SHD3_k127_3616653_2 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.0000000000000000000000000000000000001252 155.0
SHD3_k127_3616653_3 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.0000000000001598 71.0
SHD3_k127_3619543_0 Sortilin, neurotensin receptor 3, - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004282 252.0
SHD3_k127_3619543_1 Protein tyrosine kinase - - - 0.0000000000000000000009015 111.0
SHD3_k127_3620273_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009691 364.0
SHD3_k127_3620273_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000351 273.0
SHD3_k127_3620273_2 TIGRFAM Diguanylate cyclase - - - 0.00000000000000543 89.0
SHD3_k127_3620273_3 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000004431 70.0
SHD3_k127_3620273_4 Bacterial Ig-like domain - - - 0.0000001274 64.0
SHD3_k127_3620273_5 Binds directly to 16S ribosomal RNA K02968 - - 0.000008955 55.0
SHD3_k127_3620273_6 sigma54 specific transcriptional regulator - - - 0.0001628 55.0
SHD3_k127_362076_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008127 488.0
SHD3_k127_362076_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 295.0
SHD3_k127_362076_2 Nucleotidyl transferase - - - 0.000000000000000000000000000000000000000000000000009866 183.0
SHD3_k127_362076_3 thiamine kinase activity - - - 0.00003169 54.0
SHD3_k127_3623032_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006947 426.0
SHD3_k127_3627312_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009708 306.0
SHD3_k127_3627312_1 oxidoreductase activity, acting on CH-OH group of donors K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000006489 180.0
SHD3_k127_3628964_0 serine-type peptidase activity K01990,K08884,K12132,K18912 - 1.14.99.50,2.7.11.1 0.000000000000000000000000000000000000000000000000001217 195.0
SHD3_k127_3632784_0 Enoyl-CoA hydratase/isomerase K07537 - 4.2.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004561 367.0
SHD3_k127_3632784_1 BadF/BadG/BcrA/BcrD ATPase family - - - 0.000000000000000000000000000000000000000000544 162.0
SHD3_k127_3632784_2 Alcohol dehydrogenase GroES-like domain K07538 - 1.1.1.368 0.000000000000000000000000000002127 127.0
SHD3_k127_3633909_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 421.0
SHD3_k127_3633909_1 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 382.0
SHD3_k127_3633909_2 Cation transport regulator - - - 0.000000000000000000000000000000000000000000000000002694 188.0
SHD3_k127_3633909_3 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000005309 144.0
SHD3_k127_3633909_4 beta-galactosidase activity K01190 - 3.2.1.23 0.00000115 60.0
SHD3_k127_3633909_5 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and K03182 - 4.1.1.98 0.0002769 49.0
SHD3_k127_3634987_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003615 522.0
SHD3_k127_3634987_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 320.0
SHD3_k127_3634987_3 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000001999 207.0
SHD3_k127_3634987_4 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000009022 190.0
SHD3_k127_3634987_5 Riboflavin synthase K00793 - 2.5.1.9 0.00000000000000000000000000000000000000000003101 176.0
SHD3_k127_3634987_6 Peptidoglycan-binding domain 1 protein - - - 0.00000000000000000000000000000000002374 143.0
SHD3_k127_3634987_7 transcription antitermination K03625 - - 0.00000000000000000000001685 104.0
SHD3_k127_3634987_8 - - - - 0.000000000000000000000977 104.0
SHD3_k127_3640263_0 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000001689 259.0
SHD3_k127_3640263_1 flagellar motor switch protein FliM K02416 - - 0.00000000000000000000001141 113.0
SHD3_k127_3640263_2 Type III flagellar switch regulator (C-ring) FliN C-term K02417 - - 0.0000000000000000000438 103.0
SHD3_k127_3640263_3 Role in flagellar biosynthesis K02420 - - 0.000001602 51.0
SHD3_k127_3640263_4 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.000006541 53.0
SHD3_k127_3640590_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 524.0
SHD3_k127_3640590_1 - - - - 0.000000000000000004091 91.0
SHD3_k127_3642810_0 PFAM ABC transporter K02056 - 3.6.3.17 4.576e-203 645.0
SHD3_k127_3642810_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002896 410.0
SHD3_k127_3642810_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 372.0
SHD3_k127_3642810_3 SnoaL-like polyketide cyclase - - - 0.0000000000000000000000000000000000148 143.0
SHD3_k127_3642810_4 acetoacetate decarboxylase activity - - - 0.0000000000000000000000000002184 124.0
SHD3_k127_3642810_5 ubiE/COQ5 methyltransferase family - - - 0.00000000001201 74.0
SHD3_k127_3646456_0 Acetokinase family K00925 - 2.7.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004619 259.0
SHD3_k127_3646456_1 SMART Tetratricopeptide domain protein - - - 0.00000000000001094 85.0
SHD3_k127_3648317_0 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001316 280.0
SHD3_k127_3648317_1 amine dehydrogenase activity - - - 0.00005568 52.0
SHD3_k127_3658878_0 Immune inhibitor A peptidase M6 - - - 0.0000000000000000000000000000000000000000000000000000000000000004062 250.0
SHD3_k127_3658878_1 Acid phosphatase homologues K19302 - 3.6.1.27 0.00000000002269 66.0
SHD3_k127_3658878_2 cellulose binding - - - 0.0000000003521 74.0
SHD3_k127_365912_0 TIGRFAM Hopanoid biosynthesis associated radical SAM protein HpnH - - - 0.00000000000000000000001689 110.0
SHD3_k127_3666621_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 3.006e-213 670.0
SHD3_k127_3666621_1 cytochrome c nitrite reductase K15876 - - 0.00000000000000000000000000000000000000000000000000001964 192.0
SHD3_k127_3666621_2 COG1404 Subtilisin-like serine proteases K13276 - - 0.000000000000000000003069 110.0
SHD3_k127_3666621_3 protein secretion K08651 - 3.4.21.66 0.00000000000000008741 95.0
SHD3_k127_3666855_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 580.0
SHD3_k127_3666855_1 PFAM ribonuclease II K01147 - 3.1.13.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005719 549.0
SHD3_k127_3666855_2 DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 528.0
SHD3_k127_3666855_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004723 491.0
SHD3_k127_3666855_4 drug transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 407.0
SHD3_k127_3666855_5 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000009859 228.0
SHD3_k127_3666855_7 Voltage gated chloride channel K03281 - - 0.00000000005796 72.0
SHD3_k127_3666855_8 Collagenase NC10 and Endostatin K06823,K08135 GO:0000902,GO:0000904,GO:0001764,GO:0003008,GO:0003012,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005581,GO:0005604,GO:0006928,GO:0006935,GO:0006996,GO:0007005,GO:0007154,GO:0007267,GO:0007268,GO:0007271,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008045,GO:0008104,GO:0008150,GO:0009605,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0014732,GO:0014887,GO:0014888,GO:0014889,GO:0014891,GO:0014899,GO:0016043,GO:0016477,GO:0022008,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030198,GO:0030246,GO:0031012,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0035418,GO:0040011,GO:0040039,GO:0042221,GO:0042330,GO:0043062,GO:0043500,GO:0043501,GO:0044421,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051674,GO:0061564,GO:0062023,GO:0065007,GO:0071711,GO:0071840,GO:0097485,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:0120039,GO:2001044,GO:2001046 - 0.00001035 55.0
SHD3_k127_3667620_0 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 340.0
SHD3_k127_3667620_1 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 311.0
SHD3_k127_3667620_10 - - - - 0.00001842 56.0
SHD3_k127_3667620_11 Major Facilitator Superfamily - - - 0.00002325 57.0
SHD3_k127_3667620_12 - - - - 0.000102 53.0
SHD3_k127_3667620_13 CarboxypepD_reg-like domain - - - 0.0001462 54.0
SHD3_k127_3667620_2 Protein of unknown function (DUF2400) K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000001101 261.0
SHD3_k127_3667620_3 lyase activity - - - 0.00000000000000000000000000000000000000000000000007353 198.0
SHD3_k127_3667620_4 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.0000000000000000000000000000000000000001122 160.0
SHD3_k127_3667620_5 Sugar-specific transcriptional regulator TrmB - - - 0.0000000000000000000000004883 115.0
SHD3_k127_3667620_6 Glycosyl transferase family 21 - - - 0.00000000000000000000009421 111.0
SHD3_k127_3667620_7 Peptidase M6 K09607 - - 0.00000000000000000008247 101.0
SHD3_k127_3667620_8 long-chain fatty acid transporting porin activity K06076 - - 0.00000001607 67.0
SHD3_k127_3667620_9 Sulfotransferase family - - - 0.0000003222 63.0
SHD3_k127_3673456_0 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005982 316.0
SHD3_k127_3673456_1 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001275 286.0
SHD3_k127_3673456_2 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03767,K03768 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000009659 269.0
SHD3_k127_3673456_3 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.0000000000000000000000000007356 121.0
SHD3_k127_3673456_4 tetratricopeptide repeat - - - 0.00000000000414 76.0
SHD3_k127_3673456_5 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.00000000007203 70.0
SHD3_k127_3673456_6 Tetratricopeptide repeat - - - 0.00000001202 67.0
SHD3_k127_3676569_0 hydrolase activity, acting on ester bonds K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000003135 228.0
SHD3_k127_3676569_1 phosphinothricin N-acetyltransferase activity K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000000001679 210.0
SHD3_k127_3676569_2 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000000000000002933 192.0
SHD3_k127_3676569_3 Bacterial PH domain K08981 - - 0.00000000000000000000000000000000000915 143.0
SHD3_k127_3676569_4 Nucleotidyl transferase of unknown function (DUF2204) - - - 0.0000000000000001194 85.0
SHD3_k127_3681734_0 Domain of unknown function (DUF362) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000798 473.0
SHD3_k127_3681734_1 PFAM Acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005934 425.0
SHD3_k127_3681734_2 acyl-CoA dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000001967 158.0
SHD3_k127_3681734_3 BON domain - - - 0.000000000000000001552 93.0
SHD3_k127_3687578_0 Biotin-lipoyl like K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 304.0
SHD3_k127_3687578_1 PFAM Methyltransferase type 11 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001999 252.0
SHD3_k127_3695634_0 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001294 274.0
SHD3_k127_3695634_2 - - - - 0.00000000000000000000000006463 113.0
SHD3_k127_3695634_3 FR47-like protein K03823 - 2.3.1.183 0.000000000000000000000001727 111.0
SHD3_k127_3695634_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000000000000009086 98.0
SHD3_k127_3695634_5 PFAM Alpha beta hydrolase of - - - 0.00000000000000007672 92.0
SHD3_k127_3695634_6 - - - - 0.0001491 49.0
SHD3_k127_3695840_0 Peptidase family M1 domain K01992 - - 1.672e-215 689.0
SHD3_k127_3695840_1 PFAM major facilitator superfamily MFS_1 K08151 - - 0.0000000000000000000000000000000000000000000000000000000000000000006084 246.0
SHD3_k127_3695840_2 Belongs to the TrpC family K01609,K13498 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48,5.3.1.24 0.0000000000000000000000000000000000000000000000000000000002857 212.0
SHD3_k127_3696754_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 6.83e-321 1005.0
SHD3_k127_3696754_1 Domain of unknown function (DUF4139) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003396 440.0
SHD3_k127_3696754_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 287.0
SHD3_k127_3696754_3 Creatinase/Prolidase N-terminal domain - - - 0.00000000000000000000003144 102.0
SHD3_k127_3696754_4 Protein of unknown function (DUF1326) - - - 0.0003731 52.0
SHD3_k127_3703912_0 SdpI/YhfL protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002295 245.0
SHD3_k127_3703912_1 AlkA N-terminal domain K13529,K13530 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000000000189 229.0
SHD3_k127_3703912_2 regulatory protein, arsR - - - 0.0000000000000000001871 89.0
SHD3_k127_3706561_0 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000007778 204.0
SHD3_k127_3706561_1 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.0000000000000000000000000007302 116.0
SHD3_k127_3706561_2 CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) - - - 0.000000000000000004003 93.0
SHD3_k127_3708032_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000001618 228.0
SHD3_k127_3711509_0 Exodeoxyribonuclease III - - - 0.000000000000000000000000000000000000000000000007473 194.0
SHD3_k127_3711509_1 Evidence 5 No homology to any previously reported sequences - - - 0.000000000000002143 90.0
SHD3_k127_3716042_0 Dimerisation domain of Zinc Transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005277 361.0
SHD3_k127_3716042_1 endonuclease activity K07451 - - 0.000000000000000000000000000000000000000000000426 182.0
SHD3_k127_3716042_2 Belongs to the peptidase S8 family K12287 - - 0.0000000000000001186 91.0
SHD3_k127_3716042_3 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00008391 54.0
SHD3_k127_3727757_0 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000000000000006834 248.0
SHD3_k127_3727757_1 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000006572 202.0
SHD3_k127_3727757_2 Beta-propeller domains of methanol dehydrogenase type K06872 - - 0.00000000000000000000000000000000000005198 151.0
SHD3_k127_3727757_3 Lysin motif - - - 0.0000000000000000008849 89.0
SHD3_k127_3727757_4 - - - - 0.000000001518 66.0
SHD3_k127_372951_0 TIGRFAM Pilus retraction protein PilT K02670 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007439 389.0
SHD3_k127_372951_1 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000546 314.0
SHD3_k127_3734793_0 Polysulphide reductase, NrfD K00185 - - 3.719e-216 679.0
SHD3_k127_3734793_1 Molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 580.0
SHD3_k127_3734793_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 406.0
SHD3_k127_3734793_3 ABC-type Zn2 transport system, periplasmic component surface adhesin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 355.0
SHD3_k127_3734793_4 signal sequence binding K07152 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001179 282.0
SHD3_k127_3734793_5 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000000000000001562 230.0
SHD3_k127_3734793_6 Protein of unknown function (DUF3341) - - - 0.00000000000000000000000000000000000000000000000000000000002322 228.0
SHD3_k127_3734793_7 - - - - 0.00000009861 61.0
SHD3_k127_3734793_8 heme-copper terminal oxidase activity K02274 - 1.9.3.1 0.0001122 49.0
SHD3_k127_3737265_0 Prolyl oligopeptidase family K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000001099 248.0
SHD3_k127_3737265_1 HDOD domain - - - 0.00000000000000000000000000000000000000000000000000000002045 212.0
SHD3_k127_3737265_2 PFAM EAL domain - - - 0.000000000000000000000000000000000000000000001898 173.0
SHD3_k127_3737265_3 Uncharacterised protein family UPF0047 - - - 0.000000000000000000000000000000000000001149 151.0
SHD3_k127_3737265_4 Sortilin, neurotensin receptor 3, - - - 0.000001831 55.0
SHD3_k127_3743508_0 Fructose-bisphosphate aldolase class-II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008926 512.0
SHD3_k127_3743508_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 314.0
SHD3_k127_3743508_10 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.00000000000000000000002601 113.0
SHD3_k127_3743508_11 Belongs to the anti-sigma-factor antagonist family K04749 - - 0.00000000000000001095 87.0
SHD3_k127_3743508_12 Gram-negative bacterial TonB protein C-terminal - - - 0.0000000004461 71.0
SHD3_k127_3743508_13 Tetratricopeptide TPR_2 repeat protein - - - 0.0000001108 64.0
SHD3_k127_3743508_14 Tetratricopeptide TPR_2 repeat protein - - - 0.00001458 59.0
SHD3_k127_3743508_2 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001493 286.0
SHD3_k127_3743508_3 MotA/TolQ/ExbB proton channel family K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008963 246.0
SHD3_k127_3743508_4 Deoxynucleoside kinase K15518 - 2.7.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000227 250.0
SHD3_k127_3743508_5 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000001251 185.0
SHD3_k127_3743508_6 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000003478 150.0
SHD3_k127_3743508_7 PFAM Biopolymer transport protein ExbD TolR - - - 0.000000000000000000000000009676 115.0
SHD3_k127_3743508_8 biopolymer transport protein - - - 0.00000000000000000000000001552 114.0
SHD3_k127_3743508_9 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000002285 108.0
SHD3_k127_3748218_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 522.0
SHD3_k127_3748218_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000006193 222.0
SHD3_k127_3748218_2 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000003679 213.0
SHD3_k127_3753008_0 pilus assembly protein K02662 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002117 286.0
SHD3_k127_3753008_1 oligosaccharyl transferase activity - - - 0.00000000000000000000000000000000000000000000000002072 203.0
SHD3_k127_3753008_2 PFAM Pilus assembly protein PilO K02664 - - 0.0000000000000000003767 97.0
SHD3_k127_3753008_3 PFAM Fimbrial assembly family protein K02663 - - 0.000000000002335 76.0
SHD3_k127_3757804_0 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003048 567.0
SHD3_k127_3757804_1 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000000000000000000000000007325 223.0
SHD3_k127_3757804_2 extracellular matrix structural constituent - - - 0.0000000351 66.0
SHD3_k127_3767551_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 606.0
SHD3_k127_3767551_1 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000000000734 208.0
SHD3_k127_3767551_2 transcriptional regulator, Rrf2 family - - - 0.00000000000000000000000000000000001119 140.0
SHD3_k127_3767551_3 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000002543 120.0
SHD3_k127_3767551_4 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.00000000000000001715 83.0
SHD3_k127_3767551_5 Tetratricopeptide repeat - - - 0.00002052 58.0
SHD3_k127_377534_0 PFAM sigma-54 factor interaction domain-containing protein K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 421.0
SHD3_k127_377534_1 GAF domain - - - 0.000000000000000000000000000000007066 135.0
SHD3_k127_3777952_0 SprA protein - - - 0.0000000000004939 83.0
SHD3_k127_3780243_0 elongation factor Tu domain 2 protein K02355 - - 1.747e-214 686.0
SHD3_k127_3780243_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 341.0
SHD3_k127_3780243_2 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000654 299.0
SHD3_k127_3780243_3 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000008854 240.0
SHD3_k127_3780243_4 Belongs to the MsrB Met sulfoxide reductase family K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000001011 202.0
SHD3_k127_3780243_5 cellulase activity K01081,K01179,K06931 - 3.1.3.5,3.2.1.4 0.000000000000000000000000000006006 140.0
SHD3_k127_3783098_0 Inner membrane component of T3SS, cytoplasmic domain - - - 0.00000000000000000000000000000000000000000000000001247 197.0
SHD3_k127_3783098_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000007798 136.0
SHD3_k127_3783098_2 Histidine kinase K00936,K02030,K21084 - 2.7.13.3,2.7.7.65 0.000000107 64.0
SHD3_k127_378768_0 NAD binding K00333,K13378 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004623 498.0
SHD3_k127_3790890_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 GO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002309 330.0
SHD3_k127_3790890_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008074 250.0
SHD3_k127_3790890_2 DHH family K06881 - 3.1.13.3,3.1.3.7 0.00000000000000000000000000000000000000000000000002216 196.0
SHD3_k127_3790890_3 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.000000000000000000000000006893 118.0
SHD3_k127_3790890_4 EamA-like transporter family - - - 0.0000000000001879 75.0
SHD3_k127_3790890_5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.000000000149 74.0
SHD3_k127_3796704_0 Prolyl oligopeptidase, N-terminal beta-propeller domain K01354 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0070012,GO:0071704,GO:0140096,GO:1901564 3.4.21.83 0.00000000000000000000000000000000000000007381 152.0
SHD3_k127_3796704_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.00000000000000000000000000000000000003495 160.0
SHD3_k127_3796704_2 gamma-carboxymuconolactone decarboxylase subunit K01607 - 4.1.1.44 0.000000000000000001129 94.0
SHD3_k127_3796704_3 metallopeptidase activity K01113,K20274 - 3.1.3.1 0.00000004047 66.0
SHD3_k127_3813056_0 PFAM polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004747 437.0
SHD3_k127_3813056_1 diguanylate cyclase - - - 0.0000000009774 72.0
SHD3_k127_3813056_2 Sugar transferases involved in lipopolysaccharide synthesis - - - 0.0001778 53.0
SHD3_k127_3821108_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000001403 138.0
SHD3_k127_3825930_0 Transglycosylase K05366 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0008955,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042546,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005343 304.0
SHD3_k127_3825930_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.00000000000000000000000000000000000000000000000000000009879 203.0
SHD3_k127_3830465_0 cellulose binding - - - 0.000000000385 70.0
SHD3_k127_3830465_1 Belongs to the peptidase S8 family - - - 0.00000004207 64.0
SHD3_k127_3830465_2 - - - - 0.0000006101 59.0
SHD3_k127_3830465_3 PFAM Methyltransferase type 11 - - - 0.00003853 52.0
SHD3_k127_3832959_0 coagulation factor 5 8 type - - - 1.529e-213 685.0
SHD3_k127_3837675_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001659 355.0
SHD3_k127_3837675_1 lipoprotein transporter activity K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008716 302.0
SHD3_k127_3837675_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000003975 211.0
SHD3_k127_3850089_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002848 394.0
SHD3_k127_3850089_1 succinate dehydrogenase K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 356.0
SHD3_k127_3854461_0 Serine threonine protein kinase - - - 0.00000000000000996 87.0
SHD3_k127_3854461_1 Cytochrome c - - - 0.0000004407 63.0
SHD3_k127_3854461_2 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00001433 52.0
SHD3_k127_3854675_0 Carbamoyltransferase C-terminus K00612 - - 3.599e-258 808.0
SHD3_k127_3854675_1 nucleotide catabolic process K05996 - 3.4.17.18 0.00000000000000000006052 99.0
SHD3_k127_3854675_2 - - - - 0.000000000001667 80.0
SHD3_k127_3854675_3 - - - - 0.00000000108 63.0
SHD3_k127_3862579_0 Transmembrane secretion effector - - - 0.000000000000000000000000000000000000000000000000000002952 194.0
SHD3_k127_3869329_0 LVIVD repeat - - - 0.00000000000000000000000000000000000002298 162.0
SHD3_k127_3869329_1 Homocysteine S-methyltransferase K00548 - 2.1.1.13 0.00000000000000001957 84.0
SHD3_k127_3882420_0 metallopeptidase activity K01637 - 4.1.3.1 0.000000000000000000000000000000000002689 158.0
SHD3_k127_3886563_0 activity, protein serine threonine kinase activity, protein-tyrosine kinase activity, ATP binding, regulation of transcription, DNA-dependent, protein amino acid phosphorylation K08282,K13419 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002186 366.0
SHD3_k127_3886563_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000006607 237.0
SHD3_k127_3886821_0 amidohydrolase - - - 0.00000000000000000000000000000000000000002691 167.0
SHD3_k127_3886821_1 response regulator K07315 - 3.1.3.3 0.000000000000000000000000000000000005576 144.0
SHD3_k127_3886821_2 Nif11-class bacteriocin maturation radical SAM enzyme K06871 - - 0.000000000004809 79.0
SHD3_k127_389089_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 419.0
SHD3_k127_389089_1 Acyltransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002668 259.0
SHD3_k127_389089_2 phosphoenolpyruvate carboxykinase (ATP) activity K01610 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004611,GO:0004612,GO:0005488,GO:0005509,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0016051,GO:0016829,GO:0016830,GO:0016831,GO:0017076,GO:0019318,GO:0019319,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901576 4.1.1.49 0.000000000000000000000000001109 124.0
SHD3_k127_389089_3 Iron-binding zinc finger CDGSH type K06886 - - 0.00000000000001646 75.0
SHD3_k127_3892559_0 ATP-grasp domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 407.0
SHD3_k127_3892559_1 CDP-alcohol phosphatidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000001045 235.0
SHD3_k127_3892559_2 Histidine triad (Hit) protein K02503 - - 0.000000000000000000000000000000000000002665 166.0
SHD3_k127_3893788_0 synthetase (ADP forming), alpha K01905,K09181,K22224 - 6.2.1.13 2.735e-213 689.0
SHD3_k127_3893788_1 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 448.0
SHD3_k127_3893788_2 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit K01768,K07315 - 3.1.3.3,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009501 428.0
SHD3_k127_3893788_3 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001109 275.0
SHD3_k127_3893788_4 PFAM inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000003316 267.0
SHD3_k127_3893788_5 RNA polymerase sigma factor K03088 - - 0.00000000000000000000000000000000000000000003764 168.0
SHD3_k127_3893788_6 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.0000000000000000000000000003634 124.0
SHD3_k127_3893788_7 Sugar transferase, PEP-CTERM EpsH1 system associated - - - 0.00000000000000000000006117 109.0
SHD3_k127_3893788_8 Putative zinc-finger - - - 0.00000000000009333 74.0
SHD3_k127_3893788_9 C4-type zinc ribbon domain K07164 - - 0.000000005299 62.0
SHD3_k127_3903678_0 PhoQ Sensor - - - 0.000000000000000000000000000000006682 147.0
SHD3_k127_3910880_0 - - - - 0.0000000000000000000002103 110.0
SHD3_k127_3910880_1 zinc ion binding K11997 - - 0.000000001324 69.0
SHD3_k127_3923019_0 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 330.0
SHD3_k127_3923019_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000003887 243.0
SHD3_k127_3923019_2 - - - - 0.00000000000000000000000001778 115.0
SHD3_k127_3923019_3 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.00000000000000000002468 94.0
SHD3_k127_3923019_4 - - - - 0.000000000000000005676 98.0
SHD3_k127_3940950_0 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 511.0
SHD3_k127_3940950_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000006253 226.0
SHD3_k127_3951181_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain - - - 2.071e-288 905.0
SHD3_k127_3951181_1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00262 - 1.4.1.4 4.526e-250 777.0
SHD3_k127_3952338_0 ferredoxin-NADP+ reductase activity K00384,K21567 - 1.18.1.2,1.19.1.1,1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005458 372.0
SHD3_k127_3952338_1 Peptidase M16 inactive domain K07263 - - 0.000000000000000000000000000000000000000000000000000001164 210.0
SHD3_k127_3952338_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01485,K11991 GO:0002097,GO:0002100,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 3.5.4.1,3.5.4.33 0.0000000000000000000000000000000000000000000003095 179.0
SHD3_k127_3952338_3 methyltransferase - - - 0.00000000000000000000000000000000000000000001956 172.0
SHD3_k127_3952338_4 Tellurite resistance protein TerB - - - 0.00000000000003024 85.0
SHD3_k127_3952338_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000001124 61.0
SHD3_k127_3965861_0 Tricorn protease homolog K08676 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004504 492.0
SHD3_k127_3978587_0 Uncharacterized protein conserved in bacteria (DUF2169) - - - 0.0000000000000000000000000000000000000000000004264 185.0
SHD3_k127_3978587_1 Protein tyrosine kinase - - - 0.000000000000000000000000000000000006402 142.0
SHD3_k127_3978587_2 Domain of unknown function (DUF4150) - - - 0.00000000000000000000000000000003061 136.0
SHD3_k127_3978587_3 Pentapeptide repeats (9 copies) - - - 0.00000000000000000000008093 115.0
SHD3_k127_3978587_5 Pentapeptide repeats (9 copies) - - - 0.00000000002394 77.0
SHD3_k127_3979929_0 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000003002 201.0
SHD3_k127_3979929_1 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000001735 183.0
SHD3_k127_4001774_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009178 276.0
SHD3_k127_4001774_1 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000003659 244.0
SHD3_k127_4001774_2 PFAM Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000001477 202.0
SHD3_k127_4001774_3 Uncharacterized protein conserved in bacteria (DUF2200) - - - 0.0000000000000000000000000000000000000000000008596 172.0
SHD3_k127_4001774_4 Erythromycin esterase K06880 - - 0.00000000000000000000000000000002184 145.0
SHD3_k127_4001774_5 RDD family - - - 0.00000000000000000000000000003904 123.0
SHD3_k127_4001774_6 peptidyl-tyrosine sulfation - - - 0.00000000000000000001284 95.0
SHD3_k127_4001774_7 Erythromycin esterase K06880 - - 0.000000000000000001295 101.0
SHD3_k127_4001774_8 Domain of unknown function (DU1801) - - - 0.000000002312 59.0
SHD3_k127_4003837_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 1.599e-223 711.0
SHD3_k127_4003837_1 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000002432 91.0
SHD3_k127_4006158_0 Nad-dependent epimerase dehydratase K15856,K22252 - 1.1.1.135,1.1.1.281 0.0000000000000000000000000000000000000000005709 170.0
SHD3_k127_4006158_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000005104 152.0
SHD3_k127_4006158_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000001503 131.0
SHD3_k127_4006158_3 AsmA-like C-terminal region K07289,K09800 - - 0.0000000000001602 85.0
SHD3_k127_4022372_0 regulation of microtubule-based process K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 377.0
SHD3_k127_4022372_1 YceI-like domain - - - 0.0000000000000000000000000003517 123.0
SHD3_k127_4022372_2 ECF sigma factor K03088 - - 0.0000000000000000000000000316 117.0
SHD3_k127_4033500_0 Major facilitator Superfamily K08162,K08226,K16211 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 500.0
SHD3_k127_4033500_1 Sigma factor PP2C-like phosphatases - - - 0.000000000000000000000000000000000000000000000000000000000000000000002433 247.0
SHD3_k127_4033500_2 PFAM Phosphoglucomutase phosphomannomutase, alpha beta alpha domain III, Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II, Phosphoglucomutase phosphomannomutase, C-terminal domain, Phosphoglucomutase phosphomannomutase, alpha beta alpha domain I K01835 - 5.4.2.2 0.0000000000000000000000000000000000000000004396 159.0
SHD3_k127_4033500_3 abc transporter K01990 - - 0.0000000000000000000000000000000004234 136.0
SHD3_k127_4033500_4 Putative stress-induced transcription regulator - - - 0.000000000000000000000000000000008353 136.0
SHD3_k127_4033500_5 DinB superfamily - - - 0.00000000000000000000000000001075 123.0
SHD3_k127_4033500_6 - - - - 0.000000000000006727 84.0
SHD3_k127_4062457_0 PFAM malic K00027,K00029 - 1.1.1.38,1.1.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 486.0
SHD3_k127_4062457_1 Glycine cleavage H-protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003884 244.0
SHD3_k127_4067206_0 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain - - - 1.111e-262 847.0
SHD3_k127_4067206_1 PFAM FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 616.0
SHD3_k127_4067206_2 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 461.0
SHD3_k127_4067206_3 PAS fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 391.0
SHD3_k127_4067206_4 Belongs to the citrate synthase family K01647 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005169 304.0
SHD3_k127_4067206_5 Domain of unknown function (DUF4932) - - - 0.00000163 61.0
SHD3_k127_4067206_6 Endonuclease/Exonuclease/phosphatase family - - - 0.00008589 53.0
SHD3_k127_4067206_7 Peptidase s1 and s6 chymotrypsin hap K08372 - - 0.0009864 51.0
SHD3_k127_4067540_0 Aldehyde dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 420.0
SHD3_k127_4078497_0 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000000000000000000000001924 269.0
SHD3_k127_4078497_2 - - - - 0.00000001089 68.0
SHD3_k127_4078497_3 type IV pilus modification protein PilV K02458,K02671 - - 0.0000002589 60.0
SHD3_k127_4078497_4 Prokaryotic N-terminal methylation motif K08084 - - 0.00001278 53.0
SHD3_k127_4078497_5 - - - - 0.0000539 55.0
SHD3_k127_408984_0 - - - - 0.00000000000216 80.0
SHD3_k127_4110805_0 Glutamine synthetase, catalytic region K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 403.0
SHD3_k127_4110805_1 Amino acid permease K03294 - - 0.00000000000000000000001333 111.0
SHD3_k127_4118304_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003062 387.0
SHD3_k127_4118304_1 Penicillin-binding protein 1A K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 296.0
SHD3_k127_4132212_0 COG1520 FOG WD40-like repeat - - - 0.0000000000000000000001366 114.0
SHD3_k127_4143044_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771,K04772 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004862 336.0
SHD3_k127_4143044_1 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007941 258.0
SHD3_k127_4143044_2 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.00000000000000000000000000000000000000000000000000000000000006318 228.0
SHD3_k127_4143044_3 UDP-2,3-diacylglucosamine hydrolase K03269 - 3.6.1.54 0.00000000000000000000000000000000000000000000000005514 188.0
SHD3_k127_4143044_4 TIGRFAM anti-anti-sigma factor - - - 0.0000000006516 68.0
SHD3_k127_4143044_5 Subtilase family - - - 0.0005348 52.0
SHD3_k127_4165928_0 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008239 334.0
SHD3_k127_4165928_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 323.0
SHD3_k127_4165928_2 COGs COG0577 ABC-type antimicrobial peptide transport system permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 338.0
SHD3_k127_4165928_3 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 325.0
SHD3_k127_4165928_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001316 288.0
SHD3_k127_4165928_5 Polysulphide reductase, NrfD - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000004096 177.0
SHD3_k127_4197182_0 Threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005891 324.0
SHD3_k127_4197182_1 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002473 306.0
SHD3_k127_4197182_2 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002454 259.0
SHD3_k127_4197182_3 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005594 257.0
SHD3_k127_4197182_4 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000008305 221.0
SHD3_k127_4197182_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995 - 2.7.8.5 0.000000000000000000000000000001458 138.0
SHD3_k127_4197182_6 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530,K05788 - - 0.0000000000000000000000000009188 115.0
SHD3_k127_4197182_7 protein conserved in bacteria - GO:0008150,GO:0031279,GO:0031281,GO:0043085,GO:0044093,GO:0045761,GO:0045762,GO:0050790,GO:0051339,GO:0051349,GO:0065007,GO:0065009 - 0.00000000001408 70.0
SHD3_k127_4202145_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 387.0
SHD3_k127_4202145_1 Pyridoxal-phosphate dependent enzyme - - - 0.00000000000000000000000000000000000000000000002737 177.0
SHD3_k127_422960_0 DNA topoisomerase II activity K02469 - 5.99.1.3 0.0 1026.0
SHD3_k127_422960_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 4.134e-277 868.0
SHD3_k127_422960_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 299.0
SHD3_k127_422960_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000004677 243.0
SHD3_k127_422960_4 Protein of unknown function (DUF721) - - - 0.00000004609 59.0
SHD3_k127_426382_0 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000008097 244.0
SHD3_k127_426382_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000002474 184.0
SHD3_k127_426382_2 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.00000000000000000000000000000000000000000003385 162.0
SHD3_k127_426382_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.000000000000000008246 98.0
SHD3_k127_4297399_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962,K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 420.0
SHD3_k127_4297399_1 Belongs to the UPF0434 family K09791 - - 0.000000000000001586 79.0
SHD3_k127_4298263_0 TIGRFAM DNA polymerase III, alpha subunit K02337,K14162 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000004682 233.0
SHD3_k127_4298363_0 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000003058 212.0
SHD3_k127_4298363_1 Metal-dependent hydrolases of the beta-lactamase superfamily III - - - 0.000000000000000000000000000000000000000008687 172.0
SHD3_k127_4298363_2 tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.0000000000002089 71.0
SHD3_k127_4298363_3 CAAX protease self-immunity - - - 0.0000001017 57.0
SHD3_k127_4298363_4 - - - - 0.0009835 51.0
SHD3_k127_4298447_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000849 548.0
SHD3_k127_4298447_1 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005025 315.0
SHD3_k127_4298447_2 ABC-type uncharacterized transport system K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004846 278.0
SHD3_k127_4298447_3 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.00000000000000000000000000000000000000000000000000000000000054 220.0
SHD3_k127_4298447_4 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000003379 211.0
SHD3_k127_4298447_5 Metal-dependent hydrolases of the beta-lactamase superfamily III - - - 0.0000000000000000000000000000000000000000102 172.0
SHD3_k127_4298447_6 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000000000001079 124.0
SHD3_k127_4298447_7 alginic acid biosynthetic process - - - 0.00000000000002651 85.0
SHD3_k127_4298447_8 CAAX protease self-immunity - - - 0.0000001658 55.0
SHD3_k127_4299082_0 FAD dependent oxidoreductase K00303,K21061 - 1.5.3.1 0.000000000000000000000000000000000000000000000000002057 187.0
SHD3_k127_4299082_1 competence protein COMEC K02238 - - 0.0000000000000000000000000000000000000000006688 174.0
SHD3_k127_4300971_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 407.0
SHD3_k127_4300971_1 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000008569 104.0
SHD3_k127_4302140_0 SNF2 family N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 449.0
SHD3_k127_4302140_1 Acid phosphatase homologues - - - 0.00000000000000000000002016 110.0
SHD3_k127_4305679_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.0 1019.0
SHD3_k127_4305679_1 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01835 - 5.4.2.2 5.452e-246 766.0
SHD3_k127_4306242_0 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K10112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 412.0
SHD3_k127_4306242_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 GO:0001676,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003824,GO:0003989,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006417,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009317,GO:0009329,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016053,GO:0016421,GO:0016874,GO:0016885,GO:0017148,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032787,GO:0032991,GO:0034248,GO:0034249,GO:0042759,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:0097159,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:2000112,GO:2000113 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 362.0
SHD3_k127_4306242_2 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744,K09774 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004473 395.0
SHD3_k127_4306242_3 Transcriptional regulator sugar kinase K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000004281 216.0
SHD3_k127_4306242_4 5'-nucleotidase - - - 0.00000000000000000000000000000001848 142.0
SHD3_k127_4306242_5 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.000000000000000000000000000006791 132.0
SHD3_k127_4306242_6 nucleotide catabolic process - - - 0.0000000000000000000000000001359 129.0
SHD3_k127_4306242_7 COG1214 Inactive homolog of metal-dependent proteases K14742 - - 0.00000000000000000002547 98.0
SHD3_k127_4306242_8 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.0007961 44.0
SHD3_k127_4309385_0 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 487.0
SHD3_k127_4309385_1 endonuclease activity K07451 - - 0.00000000000000000000008102 105.0
SHD3_k127_4309385_2 Glycosyltransferase like family 2 K07011,K20444 - - 0.00002002 58.0
SHD3_k127_431288_0 Tricorn protease C1 domain K08676 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001525 291.0
SHD3_k127_431288_1 s1 p1 nuclease - - - 0.0000003604 57.0
SHD3_k127_4313079_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 2.072e-203 647.0
SHD3_k127_4313079_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004311 499.0
SHD3_k127_4313079_2 Immune inhibitor A peptidase M6 - - - 0.00000000000000000000000000000000000000000000000004395 205.0
SHD3_k127_4313079_3 Tetratricopeptide repeat K08309 - - 0.000000000000000000000000000000000001895 161.0
SHD3_k127_4313079_4 Fibronectin type 3 domain - - - 0.00002828 58.0
SHD3_k127_4315998_0 Galactose-1-phosphate uridyl transferase, N-terminal domain K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 439.0
SHD3_k127_4315998_1 Domains REC, sigma54 interaction, HTH8 K02481 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 421.0
SHD3_k127_4315998_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004449 415.0
SHD3_k127_4315998_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000004224 230.0
SHD3_k127_4315998_4 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000002404 154.0
SHD3_k127_4315998_5 Belongs to the mannose-6-phosphate isomerase type 2 family K16011 - 2.7.7.13,5.3.1.8 0.0000000000000000000000000000000000731 139.0
SHD3_k127_4317156_0 diguanylate cyclase - - - 0.0000000000000000000000000000000000000000004107 172.0
SHD3_k127_4317156_1 PFAM phosphatidate cytidylyltransferase - - - 0.0000000000000000000000000005313 121.0
SHD3_k127_4317156_2 peptidase activity, acting on L-amino acid peptides K01337,K05994,K20276 - 3.4.11.10,3.4.21.50 0.000000000000000000000002354 119.0
SHD3_k127_4319946_0 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000004867 143.0
SHD3_k127_4319957_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000287 207.0
SHD3_k127_4319957_1 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000003176 149.0
SHD3_k127_4319957_3 Protein conserved in bacteria - - - 0.000005051 60.0
SHD3_k127_4321945_0 Beta-propeller repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 397.0
SHD3_k127_4321945_1 Protein tyrosine kinase K08282,K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 355.0
SHD3_k127_4321945_2 polysaccharide catabolic process K01179,K01218 - 3.2.1.4,3.2.1.78 0.000000000000000001817 101.0
SHD3_k127_4321945_3 guanyl-nucleotide exchange factor activity - - - 0.000000000000004149 90.0
SHD3_k127_4321945_4 transposase activity - - - 0.00001934 48.0
SHD3_k127_4330209_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008675 278.0
SHD3_k127_4330209_1 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008627 274.0
SHD3_k127_4332242_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001153 556.0
SHD3_k127_4332242_1 Cytochrome C assembly protein K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003222 527.0
SHD3_k127_4332242_10 PFAM ABC transporter related K02193 - 3.6.3.41 0.0000000000000000000000000000000000001323 161.0
SHD3_k127_4332242_11 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000013 115.0
SHD3_k127_4332242_12 PFAM Helix-turn-helix - - - 0.000000000000000003218 87.0
SHD3_k127_4332242_13 PFAM Colicin V production K03558 - - 0.0000000000000007388 87.0
SHD3_k127_4332242_2 nucleotide-excision repair K03702 GO:0002682,GO:0002684,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006950,GO:0008150,GO:0009314,GO:0009380,GO:0009605,GO:0009607,GO:0009628,GO:0016020,GO:0032991,GO:0035821,GO:0042802,GO:0043207,GO:0044003,GO:0044403,GO:0044419,GO:0044424,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050896,GO:0051409,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052255,GO:0052552,GO:0052553,GO:0052555,GO:0052556,GO:0052564,GO:0052572,GO:0065007,GO:0071944,GO:0075136,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002165 499.0
SHD3_k127_4332242_3 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003571 347.0
SHD3_k127_4332242_4 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 GO:0003674,GO:0003824,GO:0003906,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016788,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 310.0
SHD3_k127_4332242_5 Memo-like protein K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003153 320.0
SHD3_k127_4332242_6 Quinolinate phosphoribosyl transferase, N-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000002072 267.0
SHD3_k127_4332242_7 Cytochrome C assembly protein K02195 GO:0001539,GO:0002048,GO:0002049,GO:0003674,GO:0003824,GO:0004096,GO:0004601,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006518,GO:0006629,GO:0006643,GO:0006664,GO:0006807,GO:0006810,GO:0006928,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009237,GO:0009247,GO:0009636,GO:0009987,GO:0015886,GO:0016020,GO:0016021,GO:0016209,GO:0016491,GO:0016684,GO:0019184,GO:0019290,GO:0019748,GO:0031224,GO:0031226,GO:0034641,GO:0040011,GO:0042221,GO:0043043,GO:0043107,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044425,GO:0044459,GO:0044464,GO:0044550,GO:0046467,GO:0048870,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051674,GO:0051716,GO:0055114,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071973,GO:0071975,GO:0071977,GO:0071978,GO:0097237,GO:0097588,GO:0098754,GO:0098869,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901678,GO:1903509,GO:1990748 - 0.00000000000000000000000000000000000000000000000000000000002345 213.0
SHD3_k127_4332242_8 CcmB protein K02193,K02194 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031224,GO:0031226,GO:0032991,GO:0042623,GO:0043190,GO:0044425,GO:0044459,GO:0044464,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.41 0.0000000000000000000000000000000000000000000000000000004365 201.0
SHD3_k127_4332242_9 Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a repressor K03524 - 6.3.4.15 0.000000000000000000000000000000000000003304 157.0
SHD3_k127_4333289_0 - - - - 0.0000000000000000000000000003037 119.0
SHD3_k127_4333289_1 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system K09803 - - 0.000000000000000000000000002716 113.0
SHD3_k127_4333289_2 CopG antitoxin of type II toxin-antitoxin system - - - 0.00000000000000000000000003211 112.0
SHD3_k127_4333289_3 O-Antigen ligase - - - 0.000000000000000001912 91.0
SHD3_k127_4333289_4 PFAM Stress responsive alpha-beta barrel - - - 0.00000000000001258 78.0
SHD3_k127_4335329_0 LVIVD repeat - - - 0.00000204 61.0
SHD3_k127_4337843_0 Beta-lactamase class C - - - 1.621e-199 639.0
SHD3_k127_4337843_1 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002614 326.0
SHD3_k127_4337843_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000005819 275.0
SHD3_k127_4337843_3 Pfam:DUF2029 - - - 0.000000000000000000000000000000000000007613 160.0
SHD3_k127_4337843_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000001098 87.0
SHD3_k127_4344106_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006393 359.0
SHD3_k127_4344106_1 metallopeptidase activity K06402 - - 0.000000000000000000000000000000000000000000000000000000002857 205.0
SHD3_k127_4344106_2 M6 family metalloprotease domain protein - - - 0.00008974 52.0
SHD3_k127_4346136_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006418 316.0
SHD3_k127_4346136_1 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000006756 173.0
SHD3_k127_4346136_2 - - - - 0.00000000000000001283 92.0
SHD3_k127_4349693_0 cystathionine gamma-synthase activity K01739,K01758,K01760,K01761 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004121,GO:0004123,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.48,4.4.1.1,4.4.1.11,4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 498.0
SHD3_k127_4349693_1 Cysteine synthase K01697,K01738,K12339 - 2.5.1.47,4.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007934 476.0
SHD3_k127_4349693_2 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000000000000000000000000000000000005905 166.0
SHD3_k127_4349693_3 metallopeptidase activity K01179,K01186 - 3.2.1.18,3.2.1.4 0.00000000000000000000000000000000000001348 158.0
SHD3_k127_4349693_4 DinB superfamily - - - 0.00000000000000000000000000000000000003266 149.0
SHD3_k127_4349693_5 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.000000004795 66.0
SHD3_k127_4351770_0 Magnesium chelatase, subunit ChlI C-terminal K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 523.0
SHD3_k127_4351770_2 Amino acid permease - - - 0.000000000004877 66.0
SHD3_k127_4351770_3 - - - - 0.00006537 55.0
SHD3_k127_4352360_0 Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002884 270.0
SHD3_k127_4352360_1 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000000000000008225 102.0
SHD3_k127_4352360_2 Glycosyl transferase family 2 - - - 0.0000000000000000002549 94.0
SHD3_k127_4354442_0 type ii restriction enzyme K01155 - 3.1.21.4 1.344e-195 618.0
SHD3_k127_4354442_1 N-acetyltransferase - - - 0.000000000000000000000000000000000000000000000000009342 184.0
SHD3_k127_4354442_2 PFAM amidohydrolase K01464 - 3.5.2.2 0.00000000000000000000000000000000000000000000000002218 182.0
SHD3_k127_4356553_0 Peptidase inhibitor I9 K20754 - 3.4.21.111 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 394.0
SHD3_k127_4357015_0 Belongs to the glycosyl hydrolase 1 family - - - 1.457e-230 719.0
SHD3_k127_4357015_1 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03167 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004988 614.0
SHD3_k127_4357015_2 Relaxes both positive and negative superturns and exhibits a strong decatenase activity K03166 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 593.0
SHD3_k127_4357015_3 Aminotransferase class-V K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 440.0
SHD3_k127_4357015_4 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002223 328.0
SHD3_k127_4357015_5 Asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 299.0
SHD3_k127_4357015_6 domain, Protein K20276 - - 0.000000000000000000000000000000000000000000004542 184.0
SHD3_k127_4357015_7 Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation K07130 GO:0003674,GO:0003824,GO:0004061,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019439,GO:0019441,GO:0019752,GO:0032787,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043167,GO:0043169,GO:0043420,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0070189,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 3.5.1.9 0.0000000000000000000000000000000000000000000054 184.0
SHD3_k127_4357015_8 protein conserved in bacteria - - - 0.000000000000000000000000000001327 126.0
SHD3_k127_4357015_9 extracellular matrix structural constituent - - - 0.00000003173 66.0
SHD3_k127_4357824_0 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004078 320.0
SHD3_k127_4357824_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000005166 121.0
SHD3_k127_4359631_0 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003254 419.0
SHD3_k127_4359631_1 Transcriptional regulator with HTH domain and aminotransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003269 369.0
SHD3_k127_4359631_2 PFAM Alpha amylase, catalytic K01176 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000001452 276.0
SHD3_k127_4359631_3 Metalloenzyme superfamily - - - 0.00000000000000000000000000000000000000000000000000000002939 210.0
SHD3_k127_4359631_4 Fis Family K02584 - - 0.00000000000000000000000000000000000000000000000000003186 201.0
SHD3_k127_4359631_5 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 - 4.3.3.6 0.00000000000000000000000000000000000000000000000001176 193.0
SHD3_k127_4359850_0 cytochrome c - - - 0.00000000000000000000000001543 117.0
SHD3_k127_4359850_1 Pfam Polysulphide reductase, NrfD - - - 0.000000000000000000003437 106.0
SHD3_k127_4359850_2 Polysulphide reductase, NrfD K00185 - - 0.00000003535 57.0
SHD3_k127_4361569_0 ROK family K00847 - 2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 328.0
SHD3_k127_4361569_1 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000002261 113.0
SHD3_k127_4361569_2 Late embryogenesis abundant protein - - - 0.0000221 57.0
SHD3_k127_4364096_0 DNA polymerase K02337 GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009360,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032991,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044776,GO:0046483,GO:0061695,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.7 5.08e-308 965.0
SHD3_k127_4364096_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000014 165.0
SHD3_k127_4364096_2 Domain of unknown function K20276 - - 0.000004527 53.0
SHD3_k127_4364096_3 PFAM Fibronectin, type III domain K01179,K06882 - 3.2.1.4 0.000009003 53.0
SHD3_k127_43680_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000218 575.0
SHD3_k127_43680_1 Sporulation initiation inhibitor protein Soj K03496 - - 0.0000000000000000000000000000000001436 136.0
SHD3_k127_43680_2 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.00000000000000000000002514 111.0
SHD3_k127_4373936_0 Histidine kinase - - - 0.00008505 48.0
SHD3_k127_438000_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 297.0
SHD3_k127_4387639_0 Helicase K03724 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 422.0
SHD3_k127_4401035_0 PFAM peptidase M3A and M3B thimet oligopeptidase F K08602 - - 7.111e-202 646.0
SHD3_k127_4401035_1 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001422 611.0
SHD3_k127_4401035_2 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 517.0
SHD3_k127_4401035_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.000000000001565 81.0
SHD3_k127_4401035_4 FlgD Ig-like domain - - - 0.000004683 60.0
SHD3_k127_4404579_0 Molybdopterin oxidoreductase, iron-sulfur binding subunit K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 330.0
SHD3_k127_4404579_1 Cytochrome c7 and related cytochrome c K19405,K19411 GO:0003674,GO:0005488,GO:0005507,GO:0006950,GO:0008150,GO:0008270,GO:0010035,GO:0010038,GO:0042221,GO:0043167,GO:0043169,GO:0046686,GO:0046688,GO:0046870,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0097501,GO:1990169,GO:1990170 2.7.14.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 287.0
SHD3_k127_4404579_2 Hydrolase, alpha beta fold family K19707 - - 0.00000000000000000000000000001445 129.0
SHD3_k127_4404579_3 Protein of unknown function (DUF520) K09767 - - 0.0000000000000002906 86.0
SHD3_k127_4404579_4 - - - - 0.0000000000036 72.0
SHD3_k127_4405872_0 Protein of unknown function (DUF3798) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001039 372.0
SHD3_k127_4405872_1 COG0616 Periplasmic serine proteases (ClpP class) K04773 - - 0.0000000000000000000000000000000000000000000003155 189.0
SHD3_k127_4406256_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 4.04e-203 647.0
SHD3_k127_4406256_1 histidyl-tRNA synthetase K01892 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 6.1.1.21 0.000000000000000000000000002273 115.0
SHD3_k127_4412105_0 Tetratricopeptide repeats K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 424.0
SHD3_k127_4412105_1 Bacterial extracellular solute-binding proteins, family 5 Middle K13893 - - 0.0000000000000000000000000000000000000000000000000000000000000001169 241.0
SHD3_k127_4413825_0 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 362.0
SHD3_k127_4413825_1 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006173 263.0
SHD3_k127_4413825_2 sugar transferase - - - 0.000000000000000000000000000000000000000000000000005105 188.0
SHD3_k127_4413825_3 lysyltransferase activity K07027 - - 0.00000000000000000000000000007246 128.0
SHD3_k127_4413825_4 -O-antigen K18814 - - 0.00000000000000000000000001195 125.0
SHD3_k127_4415924_0 Flagella basal body rod protein K02392 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 294.0
SHD3_k127_4415924_1 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008291 276.0
SHD3_k127_4415924_2 Flagella basal body rod protein K02392 - - 0.0000000000000000000000000000000000001642 147.0
SHD3_k127_4415924_3 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.0000000000001513 80.0
SHD3_k127_4415924_4 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.00000009954 62.0
SHD3_k127_4420212_0 ADP-ribosylation factor family K06883 GO:0008150,GO:0032879,GO:0032880,GO:0050789,GO:0065007 - 0.000000000000000000000000000000000000000000000000000000000000000000000004952 260.0
SHD3_k127_4420212_1 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000002408 180.0
SHD3_k127_4420212_2 Evidence 5 No homology to any previously reported sequences - - - 0.00000000000000000000000000000002555 145.0
SHD3_k127_4420212_3 Helix-turn-helix transcriptional regulator PuuR, cupin domain-containing - - - 0.0000000000000000000386 98.0
SHD3_k127_4420472_0 lysine biosynthetic process via aminoadipic acid - - - 2.151e-205 663.0
SHD3_k127_4420472_1 Carbohydrate phosphorylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 346.0
SHD3_k127_4421219_0 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008708 399.0
SHD3_k127_4421219_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006487 289.0
SHD3_k127_4421219_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000002079 68.0
SHD3_k127_4421219_3 peptidase activity, acting on L-amino acid peptides K07752 - 3.4.17.22 0.000000001019 67.0
SHD3_k127_4421784_0 phosphorelay sensor kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007174 314.0
SHD3_k127_4421784_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00001355 51.0
SHD3_k127_4421830_0 dienelactone hydrolase - - - 0.0000000000000000000007086 98.0
SHD3_k127_4421830_1 CHAT domain - - - 0.00000000000000000003345 107.0
SHD3_k127_4421830_2 PhoD-like phosphatase - - - 0.0000000001808 66.0
SHD3_k127_4421830_3 Sigma-70 region 2 - - - 0.00000068 58.0
SHD3_k127_4425480_0 GDP-mannose 4,6 dehydratase K17947 - 5.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000339 510.0
SHD3_k127_4425480_1 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005298 391.0
SHD3_k127_4425480_2 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000002312 153.0
SHD3_k127_4425480_3 oxidoreductase - - - 0.00000000000000000006787 89.0
SHD3_k127_4428074_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003415 387.0
SHD3_k127_4431847_0 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005321 506.0
SHD3_k127_4431847_1 Protein of unknown function (DUF1698) K15257 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 366.0
SHD3_k127_4431847_2 PFAM Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000001772 242.0
SHD3_k127_4433468_0 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000008584 230.0
SHD3_k127_4433468_1 PFAM Na-Ca exchanger integrin-beta4 peptidase-like FG-GAP K20276 - - 0.0000000000000000000000000000000000000000000000000000000001615 226.0
SHD3_k127_4433468_2 - - - - 0.0000000000009565 69.0
SHD3_k127_4433468_3 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000002103 74.0
SHD3_k127_4436168_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002586 426.0
SHD3_k127_4436168_1 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000002769 109.0
SHD3_k127_4436168_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000001838 104.0
SHD3_k127_4437421_0 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000001232 118.0
SHD3_k127_4437421_1 Outer membrane lipoprotein - - - 0.000000000002335 76.0
SHD3_k127_4437421_2 biopolymer transport protein K03559,K03560 - - 0.000000002558 68.0
SHD3_k127_4437421_3 PFAM Biopolymer transport protein ExbD TolR K03560 - - 0.0003146 50.0
SHD3_k127_4438202_0 amine dehydrogenase activity - - - 2.766e-257 826.0
SHD3_k127_4438202_1 PFAM sigma-70 region 2 domain protein K03088 - - 0.000000000000000000000000000004438 127.0
SHD3_k127_4438202_2 Protease prsW family - - - 0.0000000000000000000000001755 120.0
SHD3_k127_4438202_3 FAD dependent oxidoreductase K00303,K21061 - 1.5.3.1 0.00000000005378 67.0
SHD3_k127_4438202_4 Histidine kinase-like ATPase domain - - - 0.000000000205 67.0
SHD3_k127_4438202_5 Forkhead associated domain - - - 0.000000002808 68.0
SHD3_k127_4438202_6 transporter antisigma-factor antagonist STAS K04749,K06378 - - 0.00000001389 62.0
SHD3_k127_4438305_0 - - - - 0.0000000000000000000000000000009952 134.0
SHD3_k127_4438305_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000002971 76.0
SHD3_k127_4438305_2 BA14K-like protein - - - 0.00003322 54.0
SHD3_k127_4438454_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009405,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0022610,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033644,GO:0033646,GO:0033647,GO:0033648,GO:0033655,GO:0035639,GO:0035821,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044174,GO:0044175,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044279,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044650,GO:0044764,GO:0046812,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0051817,GO:0052047,GO:0052212,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535 - 1.988e-231 727.0
SHD3_k127_4438454_1 Uncharacterized protein conserved in bacteria (DUF2344) - - - 9.277e-197 636.0
SHD3_k127_4438454_2 N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity - - - 0.000000000000000000000000000000000000000000000000000000000002154 215.0
SHD3_k127_4438454_3 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000007499 203.0
SHD3_k127_4438454_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000006909 126.0
SHD3_k127_4438454_5 protein trimerization - - - 0.00000000000000000000000000000008463 129.0
SHD3_k127_4438454_6 Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate K01807 - 5.3.1.6 0.00000000000000000000772 98.0
SHD3_k127_4443346_0 coagulation factor 5 8 type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 375.0
SHD3_k127_4443346_1 PFAM NHL repeat containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 302.0
SHD3_k127_4446251_0 Aldo/keto reductase family K05882 - 1.1.1.91 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 340.0
SHD3_k127_4446251_1 Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009221 277.0
SHD3_k127_4446251_2 Amidohydrolase family - - - 0.0000000000000000000000001176 114.0
SHD3_k127_4448922_0 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000001696 218.0
SHD3_k127_4448922_1 ABC transporter K09812 - - 0.000000000000000000000000000000000000000000000000000002447 198.0
SHD3_k127_4448922_2 Peptidase family M23 K21471 GO:0000920,GO:0001896,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008219,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0012501,GO:0016020,GO:0016787,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0042221,GO:0042493,GO:0042546,GO:0042597,GO:0043085,GO:0044085,GO:0044093,GO:0044464,GO:0050790,GO:0050896,GO:0051301,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071554,GO:0071840,GO:0071944 - 0.00000000000000000000000000000000000000000000389 186.0
SHD3_k127_4448922_3 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 - - 0.00000000000000000000000000000000000005542 154.0
SHD3_k127_4448922_4 S4 RNA-binding domain - GO:0008150,GO:0040007 - 0.000000000000000002422 88.0
SHD3_k127_4448922_5 Subtilase family - - - 0.0000006073 56.0
SHD3_k127_4451616_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.537e-215 681.0
SHD3_k127_4451616_1 TIGRFAM RNA polymerase sigma-54 factor K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008949 357.0
SHD3_k127_4451616_10 - - - - 0.0000000000000000000000000001308 118.0
SHD3_k127_4451616_11 PTS system sorbose subfamily IIB component K02794,K19507 - 2.7.1.191 0.000000000000000000000000001288 124.0
SHD3_k127_4451616_12 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000008134 126.0
SHD3_k127_4451616_13 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.00000000000000004038 91.0
SHD3_k127_4451616_14 PFAM PTS system fructose subfamily IIA component K02793 - 2.7.1.191 0.00002976 56.0
SHD3_k127_4451616_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 332.0
SHD3_k127_4451616_3 Arabinose 5-phosphate isomerase K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002801 309.0
SHD3_k127_4451616_4 lipopolysaccharide transport protein B ATP-binding component of ABC superfamily K01990,K06861 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 301.0
SHD3_k127_4451616_5 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase K01627 - 2.5.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001085 289.0
SHD3_k127_4451616_6 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008690,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0046401,GO:0070567,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 2.7.7.38 0.0000000000000000000000000000000000000000000000000000002026 204.0
SHD3_k127_4451616_7 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.00000000000000000000000000000000000005298 143.0
SHD3_k127_4451616_8 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 - 3.1.3.45 0.00000000000000000000000000000001652 133.0
SHD3_k127_4451616_9 - - - - 0.0000000000000000000000000000003296 138.0
SHD3_k127_4456953_0 ABC transporter - - - 1.821e-216 679.0
SHD3_k127_4456953_1 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003387 557.0
SHD3_k127_4457681_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 5.152e-232 745.0
SHD3_k127_4457681_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000001573 67.0
SHD3_k127_4457681_2 - - - - 0.0003277 52.0
SHD3_k127_4458234_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 GO:0002790,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009306,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0022857,GO:0022884,GO:0031224,GO:0031226,GO:0031522,GO:0032940,GO:0032978,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0042887,GO:0043952,GO:0044425,GO:0044459,GO:0044464,GO:0045047,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 536.0
SHD3_k127_4458234_1 rRNA binding K02886 GO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 389.0
SHD3_k127_4458234_10 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000002664 201.0
SHD3_k127_4458234_11 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000224 214.0
SHD3_k127_4458234_12 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000006427 202.0
SHD3_k127_4458234_13 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000001179 188.0
SHD3_k127_4458234_14 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000001919 179.0
SHD3_k127_4458234_15 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0008150,GO:0015934,GO:0016020,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071944,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000001992 178.0
SHD3_k127_4458234_16 Glycosyl hydrolase-like 10 - - - 0.000000000000000000000000000000000000000000000000734 192.0
SHD3_k127_4458234_17 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000000008498 174.0
SHD3_k127_4458234_18 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000001017 158.0
SHD3_k127_4458234_19 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000003134 157.0
SHD3_k127_4458234_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 363.0
SHD3_k127_4458234_20 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000002758 146.0
SHD3_k127_4458234_21 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065 - 0.000000000000000000000000000000000002576 140.0
SHD3_k127_4458234_22 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000006624 136.0
SHD3_k127_4458234_23 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000006663 134.0
SHD3_k127_4458234_24 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000003161 137.0
SHD3_k127_4458234_25 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000611 119.0
SHD3_k127_4458234_26 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000002592 119.0
SHD3_k127_4458234_27 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000003725 113.0
SHD3_k127_4458234_28 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000004989 99.0
SHD3_k127_4458234_29 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000013 88.0
SHD3_k127_4458234_3 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 324.0
SHD3_k127_4458234_30 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) K02907 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000001956 77.0
SHD3_k127_4458234_31 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000005159 70.0
SHD3_k127_4458234_32 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000001164 64.0
SHD3_k127_4458234_4 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007787 279.0
SHD3_k127_4458234_5 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001678 264.0
SHD3_k127_4458234_6 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000002468 250.0
SHD3_k127_4458234_7 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000824 227.0
SHD3_k127_4458234_8 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000002155 223.0
SHD3_k127_4458234_9 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000001203 214.0
SHD3_k127_4458321_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1295.0
SHD3_k127_4458321_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004829 441.0
SHD3_k127_4458321_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008276 298.0
SHD3_k127_4458321_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0015934,GO:0015968,GO:0016043,GO:0019538,GO:0019843,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0031667,GO:0031668,GO:0031669,GO:0032984,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070925,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000008474 212.0
SHD3_k127_4458321_4 Participates in transcription elongation, termination and antitermination K02601 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030312,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043244,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000004087 211.0
SHD3_k127_4458321_5 Ribosomal protein L7/L12 dimerisation domain K02935 - - 0.0000000000000000000000000000000000000002843 153.0
SHD3_k127_4458321_6 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000003723 148.0
SHD3_k127_4458321_7 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.00000000000000000013 88.0
SHD3_k127_4458321_8 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000001743 79.0
SHD3_k127_4458321_9 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000005125 57.0
SHD3_k127_4459520_0 PFAM PHP domain K07053 - 3.1.3.97 0.000000000000000000000000000000000000000000000000000000000000000000002104 244.0
SHD3_k127_4467286_0 Bacterial protein of unknown function (DUF853) K06915 - - 4.866e-240 750.0
SHD3_k127_4470621_0 Receptor family ligand binding region K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 433.0
SHD3_k127_4470621_1 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000000000002099 237.0
SHD3_k127_4470621_2 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000003296 166.0
SHD3_k127_4487929_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 8.417e-200 631.0
SHD3_k127_4487929_1 PFAM UDP-galactopyranose mutase, C-terminal K01854 - 5.4.99.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 429.0
SHD3_k127_4490545_0 Histidine kinase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 475.0
SHD3_k127_4490545_1 PFAM Uncharacterised ACR, YagE family COG1723 - - - 0.00000000000000000000000000002655 122.0
SHD3_k127_4490545_2 cellulase activity K06882 - - 0.0000000000000000002248 98.0
SHD3_k127_4497514_0 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000001364 256.0
SHD3_k127_4497514_1 Proton-conducting membrane transporter K12137 - - 0.00000000000000000000000000000000000000000000000000000000000000000001668 245.0
SHD3_k127_4497914_0 denitrification pathway K15876 GO:0003674,GO:0003824,GO:0005575,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0031224,GO:0044237,GO:0044425,GO:0045333,GO:0055114 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000416 415.0
SHD3_k127_4497914_1 Haem-binding domain - - - 0.0000000000000000000000000000000001167 138.0
SHD3_k127_4497914_2 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000000000000004089 149.0
SHD3_k127_4497914_3 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000007777 84.0
SHD3_k127_4497914_4 12 heme-binding sites - - - 0.00000006055 64.0
SHD3_k127_4497914_5 ABC transporter, transmembrane K11085 - - 0.000001792 50.0
SHD3_k127_4501712_0 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000001267 277.0
SHD3_k127_4501712_1 InterPro IPR014922 - - - 0.00000000000000000000000000000000000000148 148.0
SHD3_k127_4501712_2 AI-2E family transporter - - - 0.000000000000000000000000000000000005383 152.0
SHD3_k127_4504668_0 KaiC K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 432.0
SHD3_k127_4504668_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000003794 250.0
SHD3_k127_4504668_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000000000000000000000000000000000000000000000000000000000000000005312 238.0
SHD3_k127_4504668_3 PFAM MscS Mechanosensitive ion channel K22044 - - 0.0000000000000000000000000000000000000000000000000000000000000005527 244.0
SHD3_k127_4504668_4 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000004332 196.0
SHD3_k127_4504668_5 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 GO:0003674,GO:0003824,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008685,GO:0009058,GO:0009987,GO:0016114,GO:0016829,GO:0016849,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0051483,GO:0071704,GO:1901576 2.7.7.60,4.6.1.12 0.000000000000000000000000000000006293 138.0
SHD3_k127_4508186_0 PDZ DHR GLGF domain protein - - - 0.0000000000000001343 94.0
SHD3_k127_4508186_1 PFAM Rubrerythrin - - - 0.00000001854 61.0
SHD3_k127_4508186_2 Peptidase, M16 - - - 0.00000002165 67.0
SHD3_k127_4525431_0 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001189 280.0
SHD3_k127_4525431_1 cellulose binding K00505 - 1.14.18.1 0.000000000000000000000000000000000000000000000000000000000000000000003645 250.0
SHD3_k127_4525431_2 Glycosyltransferase 36 associated - - - 0.000000000000000000000000000000000000000000000000008936 194.0
SHD3_k127_4525431_3 Glycosyltransferase 36 associated - - - 0.0000000000007519 73.0
SHD3_k127_4529834_0 deaminated base DNA N-glycosylase activity K21929 GO:0003674,GO:0003824,GO:0004844,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0033958,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009956 278.0
SHD3_k127_4529834_1 Thymidine kinase K00857 - 2.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000003663 248.0
SHD3_k127_4529834_2 LysM domain - - - 0.00004384 55.0
SHD3_k127_4529834_3 TfoX N-terminal domain - - - 0.00004913 55.0
SHD3_k127_4533523_0 4Fe-4S binding domain - - - 1.436e-259 820.0
SHD3_k127_4533523_1 PFAM Fatty acid desaturase K04712 - 1.14.18.5,1.14.19.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 346.0
SHD3_k127_4533523_2 synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003984 284.0
SHD3_k127_4533523_3 PFAM cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000002333 252.0
SHD3_k127_4533523_4 Phosphomethylpyrimidine kinase K00941,K14153 - 2.5.1.3,2.7.1.49,2.7.4.7 0.0000000000000000000000000000000000000000000000000000000002834 212.0
SHD3_k127_4533523_5 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000008372 224.0
SHD3_k127_4533523_6 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03466,K03657,K03684,K03724 - 3.1.13.5,3.6.4.12 0.0000000000000000000000000000000000000000000000000001611 192.0
SHD3_k127_4533523_7 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000000000000000000000001835 181.0
SHD3_k127_4533523_8 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000003871 128.0
SHD3_k127_4533523_9 Prolyl oligopeptidase family - - - 0.0000000000000000000008239 104.0
SHD3_k127_4534229_0 Belongs to the peptidase S8 family K01280 - 3.4.14.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 486.0
SHD3_k127_4534229_1 Protein of unknown function (DUF423) - - - 0.00000000000000000000000000000006445 141.0
SHD3_k127_45352_0 Peptidase family M3 K01392 - 3.4.24.15 1.369e-218 700.0
SHD3_k127_45352_1 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 395.0
SHD3_k127_45352_2 helix_turn_helix gluconate operon transcriptional repressor K07979 - - 0.00000000000000000000000000000000000000000000002872 174.0
SHD3_k127_4544823_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003416 552.0
SHD3_k127_4544823_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 534.0
SHD3_k127_4544823_2 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 366.0
SHD3_k127_4545627_0 beta-galactosidase activity K01224 - 3.2.1.89 0.0 1233.0
SHD3_k127_4545627_1 Glycosyl hydrolase family 1 K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 603.0
SHD3_k127_4545627_2 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 324.0
SHD3_k127_4545627_3 Parallel beta-helix repeats - - - 0.00000000001609 75.0
SHD3_k127_4545898_0 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000002805 78.0
SHD3_k127_4545898_1 Preprotein translocase subunit SecG K03075 - - 0.00000003319 61.0
SHD3_k127_4546197_0 Tetratricopeptide repeat - - - 0.00003808 56.0
SHD3_k127_4552181_0 PglZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 559.0
SHD3_k127_4552181_1 ABC transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007478 363.0
SHD3_k127_4552181_2 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.00000000000000000002055 106.0
SHD3_k127_4552181_3 COG1214 Inactive homolog of metal-dependent proteases K01409,K14742 - 2.3.1.234 0.000000000000005704 84.0
SHD3_k127_4555551_0 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000000000000004591 224.0
SHD3_k127_4555551_1 Beta-propeller repeat - - - 0.00000003017 67.0
SHD3_k127_4560801_0 cellulose binding - - - 0.0 1072.0
SHD3_k127_4560801_1 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000002374 121.0
SHD3_k127_4560801_2 PDZ DHR GLGF domain protein - - - 0.00000000000000000000005506 112.0
SHD3_k127_4560801_3 PFAM sigma-70 region 2 domain protein - - - 0.00000000000006562 78.0
SHD3_k127_4563429_0 PFAM Bile acid sodium symporter K03325 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005764 465.0
SHD3_k127_4563429_1 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.000000000076 69.0
SHD3_k127_4563429_2 zinc-ribbon domain - - - 0.00000128 54.0
SHD3_k127_4569696_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002903 288.0
SHD3_k127_4569696_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000009997 194.0
SHD3_k127_4579925_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.359e-239 749.0
SHD3_k127_4579925_1 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0016032,GO:0016465,GO:0019058,GO:0019068,GO:0032991,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051704,GO:0061077,GO:0101031,GO:1990220 - 0.00000000000000000000000000000000001481 137.0
SHD3_k127_4579925_2 5'-nucleotidase K01081,K01119 - 3.1.3.5,3.1.3.6,3.1.4.16 0.0000000000000000000000000000973 121.0
SHD3_k127_4579925_3 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.00000000000000000001116 96.0
SHD3_k127_4584903_0 Radical SAM superfamily K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000218 253.0
SHD3_k127_4585443_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 362.0
SHD3_k127_4585443_1 O-methyltransferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000006869 191.0
SHD3_k127_4585949_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 593.0
SHD3_k127_4585949_1 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000004645 231.0
SHD3_k127_4585949_2 Phosphoesterase K07095 - - 0.00000000000000000000000001539 128.0
SHD3_k127_4585949_3 CAAX protease self-immunity K07052 - - 0.0000000000000000000000002475 121.0
SHD3_k127_4596994_0 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 393.0
SHD3_k127_4596994_1 MutL protein K00854 - 2.7.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 294.0
SHD3_k127_4600631_0 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000002936 166.0
SHD3_k127_4600631_1 Transposase - - - 0.0000000000002617 80.0
SHD3_k127_4601733_0 Aminotransferase class I and II - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 516.0
SHD3_k127_4601733_1 PFAM Aspartate glutamate uridylate kinase K00926 - 2.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 331.0
SHD3_k127_4601733_2 Lamin Tail Domain - - - 0.000001296 59.0
SHD3_k127_4601796_0 Formiminotransferase domain, N-terminal subdomain K00603,K13990 - 2.1.2.5,4.3.1.4 0.00000000000000007819 85.0
SHD3_k127_4601796_1 Tetratricopeptide repeats - - - 0.00002176 57.0
SHD3_k127_4602512_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823,K15372 - 2.6.1.19,2.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002498 499.0
SHD3_k127_4602512_1 Aldehyde dehydrogenase family K22187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 502.0
SHD3_k127_4602512_2 Carbon-nitrogen hydrolase K12251 - 3.5.1.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004609 472.0
SHD3_k127_4602512_3 PFAM Permease for cytosine purines, uracil, thiamine, allantoin K03457 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006236 388.0
SHD3_k127_4602512_4 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000008649 187.0
SHD3_k127_4602512_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000007603 172.0
SHD3_k127_4602512_6 - - - - 0.0000000000000003954 91.0
SHD3_k127_4625144_0 SnoaL-like domain - - - 0.0000000000000000004125 94.0
SHD3_k127_4625144_1 NHL repeat - - - 0.000000000000006966 80.0
SHD3_k127_4627776_0 Glycosyltransferase like family 2 - - - 0.000000000000000000000000000000000000000005157 169.0
SHD3_k127_4627776_1 glycosyl transferase family 2 - - - 0.0000000000000000000000000000003758 140.0
SHD3_k127_4627776_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.000000000031 73.0
SHD3_k127_4630813_0 Sigma-70 region 2 K03088 - - 0.000000000000000000000001268 106.0
SHD3_k127_4630813_1 Putative adhesin - - - 0.0000000000000000000004887 108.0
SHD3_k127_4630813_2 AntiSigma factor K00567 - 2.1.1.63 0.000001154 59.0
SHD3_k127_4638440_0 ABC transporter, transmembrane K18889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007582 576.0
SHD3_k127_4638440_1 ABC transporter transmembrane region K18890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001303 553.0
SHD3_k127_4638440_2 protein secretion K09800 - - 0.000000000000001003 80.0
SHD3_k127_4651578_0 Peptidase family C25 - - - 0.00000000000000000000000000003358 136.0
SHD3_k127_4670169_0 cAMP biosynthetic process K08282,K12132 - 2.7.11.1 1.632e-289 906.0
SHD3_k127_4670169_1 Fibronectin type III domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002056 286.0
SHD3_k127_4670169_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.0000000000000000000000000002828 134.0
SHD3_k127_4670169_3 long-chain fatty acid transporting porin activity - - - 0.000000000000000000000000895 112.0
SHD3_k127_4670169_4 Archaeal Type IV pilin, N-terminal - - - 0.000000006488 70.0
SHD3_k127_4670169_5 amine dehydrogenase activity K01406 - 3.4.24.40 0.00000275 62.0
SHD3_k127_4671571_0 OmpA family - - - 0.00000000000000000000000000000000000000000000000000002798 207.0
SHD3_k127_4671571_1 exo-alpha-(2->6)-sialidase activity - - - 0.000000000000000003429 98.0
SHD3_k127_46913_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006543 297.0
SHD3_k127_46913_1 xanthine dehydrogenase activity K13479 - 1.17.1.4 0.0000000000000000000000000000000000000000001494 174.0
SHD3_k127_46913_2 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000001839 167.0
SHD3_k127_4700030_0 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179,K17105 - 2.5.1.39,2.5.1.42 0.000000000000000000000000000000000000000000000003622 189.0
SHD3_k127_4700030_1 Diacylglycerol kinase catalytic domain - - - 0.00000000000000000002364 105.0
SHD3_k127_4701488_0 endonuclease activity K07451 - - 0.0000000000000000000000000000000000000000000000000000004184 210.0
SHD3_k127_4701488_1 Two component, sigma54 specific, transcriptional regulator, Fis family - - - 0.0000000000000000000000000000007671 126.0
SHD3_k127_4719937_0 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 549.0
SHD3_k127_4719937_1 enoyl-CoA hydratase K13766,K13779 - 4.2.1.18,4.2.1.57 0.0000000000000000000000000000000000000000000000000000000000000000005934 237.0
SHD3_k127_4723464_0 Diguanylate cyclase - - - 0.000000000000000000000000000508 128.0
SHD3_k127_4723494_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024 556.0
SHD3_k127_4723494_1 Nucleotidyl transferase K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002525 454.0
SHD3_k127_4723494_10 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.00000000000000000000000000000000000000004041 160.0
SHD3_k127_4723494_11 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000002928 151.0
SHD3_k127_4723494_12 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000005567 136.0
SHD3_k127_4723494_13 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000007129 131.0
SHD3_k127_4723494_14 SpoVG K06412 - - 0.000000000000000000000009985 104.0
SHD3_k127_4723494_15 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000000003039 98.0
SHD3_k127_4723494_16 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.00000000000000000007599 94.0
SHD3_k127_4723494_17 peptidylprolyl isomerase K03769 - 5.2.1.8 0.00000000000000006207 94.0
SHD3_k127_4723494_2 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 GO:0003674,GO:0003824,GO:0004125,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016070,GO:0016259,GO:0016260,GO:0016740,GO:0016785,GO:0018130,GO:0019438,GO:0019752,GO:0019842,GO:0030170,GO:0032774,GO:0034641,GO:0034654,GO:0034660,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0090304,GO:0097056,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 423.0
SHD3_k127_4723494_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 GO:0003674,GO:0003824,GO:0004749,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016772,GO:0016778,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006802 358.0
SHD3_k127_4723494_4 UbiA prenyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002518 265.0
SHD3_k127_4723494_5 Male sterility protein K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000000005311 249.0
SHD3_k127_4723494_6 endonuclease activity K07451 - - 0.000000000000000000000000000000000000000000000000000000000002692 224.0
SHD3_k127_4723494_7 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.00000000000000000000000000000000000000000000000000001088 203.0
SHD3_k127_4723494_8 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000009821 183.0
SHD3_k127_4723494_9 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050515 2.7.1.148 0.000000000000000000000000000000000000000000000004572 191.0
SHD3_k127_4752855_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006333 499.0
SHD3_k127_4752855_1 Protein of unknown function (DUF1003) - - - 0.0000000000000000000000000000000000000000000000007789 183.0
SHD3_k127_4795381_0 Peptidase M15 - - - 0.00000000000000000000000000000000000000000002591 177.0
SHD3_k127_48025_0 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000001647 232.0
SHD3_k127_48025_1 oxidase subunit - - - 0.00000000000000001148 93.0
SHD3_k127_4803286_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000004446 117.0
SHD3_k127_4803646_0 Major Facilitator Superfamily K03446 - - 1.225e-215 683.0
SHD3_k127_4803646_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 449.0
SHD3_k127_4803646_2 PFAM transferase hexapeptide repeat containing protein K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002981 396.0
SHD3_k127_4803646_3 Peptidase family S49 K04773 - - 0.000000000000000000000000000000000000000000000000000000000000000001231 242.0
SHD3_k127_4803646_4 long-chain fatty acid transport protein - - - 0.000000000000000000000000000000000000000000089 174.0
SHD3_k127_4803646_5 Biotin-lipoyl like K03543 - - 0.0000000000000000000000000003215 118.0
SHD3_k127_4803646_6 BMC - - - 0.0000001698 57.0
SHD3_k127_4827098_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.17 2.237e-211 665.0
SHD3_k127_4827098_1 Belongs to the peptidase S8 family K14743 - - 0.0000000000000000000000000000000000000003851 166.0
SHD3_k127_4827098_2 CHAT domain - - - 0.000000000000000000000000000000001224 137.0
SHD3_k127_4827098_3 nUDIX hydrolase K03574,K03575 - 3.6.1.55 0.00000000000000000000000000001284 127.0
SHD3_k127_4827098_4 Copper binding proteins, plastocyanin/azurin family - - - 0.0000000001032 70.0
SHD3_k127_4833911_0 ABC transporter transmembrane region K06147 - - 1.138e-225 713.0
SHD3_k127_4833911_1 Belongs to the pirin family K06911 - - 0.000000000000003944 76.0
SHD3_k127_4854050_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004031 460.0
SHD3_k127_4854050_1 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009038 446.0
SHD3_k127_4854050_2 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000007492 244.0
SHD3_k127_4854050_3 Peptidase family M48 - - - 0.0000004705 63.0
SHD3_k127_4854050_4 Glycosyltransferase family 9 (heptosyltransferase) - - - 0.0001873 51.0
SHD3_k127_4899513_0 - - - - 0.0000000000000000000000000000003722 135.0
SHD3_k127_4899513_1 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000002971 76.0
SHD3_k127_4899513_2 BA14K-like protein - - - 0.000004625 57.0
SHD3_k127_4912482_0 Capsule assembly protein Wzi - - - 0.0000000000000000000000000002652 132.0
SHD3_k127_4925026_0 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005702 319.0
SHD3_k127_4925026_1 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005674 296.0
SHD3_k127_4925026_2 HI0933-like protein K07007 - - 0.0000000000000000000000000000000001396 138.0
SHD3_k127_4925026_3 flagellar protein MotY K21218 - - 0.00009065 55.0
SHD3_k127_4927809_0 Domain of unknown function (DUF3459) K01236 - 3.2.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009498 608.0
SHD3_k127_4927809_1 Alpha amylase, catalytic domain K06044 - 5.4.99.15 0.00000000000000009476 84.0
SHD3_k127_495749_0 ABC-type oligopeptide transport system, periplasmic component K15580 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003906 435.0
SHD3_k127_495749_1 Binding-protein-dependent transport system inner membrane component K15581 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 357.0
SHD3_k127_495749_2 Binding-protein-dependent transport system inner membrane component K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003848 274.0
SHD3_k127_497467_0 heat shock protein binding - - - 0.0000000000000002654 90.0
SHD3_k127_497467_1 Tetratricopeptide repeat - - - 0.0000000000001279 84.0
SHD3_k127_5011682_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 1.047e-232 730.0
SHD3_k127_5011682_1 Short chain fatty acid transporter K02106 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 442.0
SHD3_k127_5011682_2 PFAM Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002691 406.0
SHD3_k127_5011682_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000003274 257.0
SHD3_k127_5011682_4 creatininase K01470 - 3.5.2.10 0.00000000000000000000000000000000000000001461 163.0
SHD3_k127_5011682_5 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000002489 130.0
SHD3_k127_5011682_6 peroxiredoxin activity K02199 - - 0.0000000000000000000000001246 111.0
SHD3_k127_5015179_0 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000001886 152.0
SHD3_k127_5015179_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000001388 127.0
SHD3_k127_5015179_2 - - - - 0.0000000000000000000000001515 109.0
SHD3_k127_5015179_3 PFAM polysaccharide biosynthesis protein - - - 0.000000000000000000000004758 114.0
SHD3_k127_5017433_0 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding K03520 - 1.2.5.3 1.811e-195 615.0
SHD3_k127_5017433_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000001518 167.0
SHD3_k127_5018964_0 Belongs to the UPF0761 family K07058 - - 0.0000000000000000000000000000000003848 143.0
SHD3_k127_5018964_1 Yqey-like protein K09117 - - 0.000000000000000000000000000002112 125.0
SHD3_k127_5018964_2 Periplasmic or secreted lipoprotein - - - 0.0000000000000000000000000004958 121.0
SHD3_k127_5020075_0 glucosamine-1-phosphate N-acetyltransferase activity K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004601 284.0
SHD3_k127_5020075_1 Tetratricopeptide repeat - - - 0.00000004542 66.0
SHD3_k127_5028057_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.148e-274 866.0
SHD3_k127_5028057_1 PFAM aminotransferase class V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003872 263.0
SHD3_k127_5033916_0 Ribosomal protein S1-like RNA-binding domain K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007553 308.0
SHD3_k127_5033916_1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000638 118.0
SHD3_k127_5033916_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000004765 50.0
SHD3_k127_5034116_0 Cytochrome c K02305,K07152 - - 0.00000000000001289 79.0
SHD3_k127_5034116_1 Outer membrane efflux protein - - - 0.0000000006331 68.0
SHD3_k127_5036043_0 FlgD Ig-like domain - - - 0.000001255 63.0
SHD3_k127_5036687_0 Amidase K01426 - 3.5.1.4 2.477e-205 648.0
SHD3_k127_5036687_1 Transglutaminase-like superfamily - - - 0.0000000000000000000000000000000000001331 155.0
SHD3_k127_5037008_0 tRNA synthetase class II core domain (G, H, P, S and T) K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001019 415.0
SHD3_k127_5037008_1 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000001961 255.0
SHD3_k127_5037008_2 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000001054 99.0
SHD3_k127_5037008_3 VanZ like family - - - 0.0000007465 57.0
SHD3_k127_5037206_0 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000001469 90.0
SHD3_k127_5038008_0 regulation of microtubule-based process K06990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008938 373.0
SHD3_k127_5038008_1 YceI-like domain - - - 0.000000000000000000000000000134 124.0
SHD3_k127_5038631_0 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 304.0
SHD3_k127_5038631_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.0000000000000000000000001109 114.0
SHD3_k127_5040421_0 maltose binding K02027,K17329 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004585 377.0
SHD3_k127_5040421_1 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002844 282.0
SHD3_k127_5040421_2 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.000000000000000000000000000000000000008704 147.0
SHD3_k127_5042214_0 PFAM Aminotransferase class I and II K00812,K14260 - 2.6.1.1,2.6.1.2,2.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 447.0
SHD3_k127_5042214_1 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006611 440.0
SHD3_k127_5042214_2 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008264 279.0
SHD3_k127_5042214_3 Cupin 2, conserved barrel - - - 0.0000000000000000000000000000000000000000000000000008403 194.0
SHD3_k127_5042214_4 PFAM NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000000003893 163.0
SHD3_k127_5042214_5 Bacterial transcriptional activator domain - - - 0.0000000000001215 84.0
SHD3_k127_5042214_6 Glycosyl hydrolase family 70 K01142,K01176 - 3.1.11.2,3.2.1.1 0.000000000002954 81.0
SHD3_k127_504229_0 Protein of unknown function (DUF1684) K09164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006958 278.0
SHD3_k127_504229_1 serine-type peptidase activity - - - 0.00000000000000000000000000000000000000000000000000000867 209.0
SHD3_k127_504229_3 COG0500 SAM-dependent methyltransferases - - - 0.00000001466 64.0
SHD3_k127_5056599_0 Protein of unknown function (DUF971) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000187 269.0
SHD3_k127_5056599_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.000000002555 67.0
SHD3_k127_5059938_0 WD40-like Beta Propeller Repeat K03641,K07277 - - 0.0000000000000000000000000000000000000000000000000007538 200.0
SHD3_k127_5070780_0 Aspartate-ammonia ligase K01914 GO:0003674,GO:0003824,GO:0004071,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050896,GO:0051716,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.1.1 1.212e-213 666.0
SHD3_k127_5070780_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003745 352.0
SHD3_k127_5070780_2 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000002344 240.0
SHD3_k127_5070780_3 - - - - 0.0000000000000000000000000000002343 139.0
SHD3_k127_5071778_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009051 478.0
SHD3_k127_5071778_1 Polyprenyl synthetase K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000006131 249.0
SHD3_k127_5071778_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000002026 125.0
SHD3_k127_5072056_0 carboxymethylenebutenolidase activity K01061,K07100 - 3.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002518 276.0
SHD3_k127_5072056_1 Phosphoribosyl transferase domain K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007351 274.0
SHD3_k127_5072056_2 Uncharacterized protein conserved in bacteria (DUF2344) - - - 0.00000000000000000000000005902 115.0
SHD3_k127_5086526_0 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005804 500.0
SHD3_k127_5086526_1 similarity to GB CAH39666.1 - - - 0.000000000000000000000000000000000000000156 164.0
SHD3_k127_5086526_2 HNH nucleases - - - 0.0000007448 53.0
SHD3_k127_5094247_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1167.0
SHD3_k127_509536_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006153 390.0
SHD3_k127_509536_1 PFAM NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 376.0
SHD3_k127_509536_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 336.0
SHD3_k127_509536_3 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002861 294.0
SHD3_k127_509536_4 PFAM Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000002676 196.0
SHD3_k127_509536_5 PFAM transferase hexapeptide repeat containing protein - - - 0.000000000000000000000000000000000000000000000000003949 188.0
SHD3_k127_5096071_0 Peptidase, M16 K07263 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 2.012e-232 752.0
SHD3_k127_5096071_1 Peptidase dimerisation domain K01436 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 373.0
SHD3_k127_5096071_2 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000865 355.0
SHD3_k127_5096071_3 COG1045 Serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000006861 231.0
SHD3_k127_5096071_4 SMART AAA ATPase K02450 - - 0.000000000000000000000000000000000000000000000000000000007689 220.0
SHD3_k127_5096071_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000007002 107.0
SHD3_k127_5096071_6 DNA polymerase III alpha subunit K02337,K14162 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 2.7.7.7 0.00000000000000004957 86.0
SHD3_k127_5096071_7 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.00001596 55.0
SHD3_k127_5096869_0 Pyruvate:ferredoxin oxidoreductase core domain II K00169 - 1.2.7.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 451.0
SHD3_k127_5096869_1 Glutamate synthase - - - 0.00000000000000000000008184 103.0
SHD3_k127_5097918_0 serine-type peptidase activity K01278 - 3.4.14.5 3.575e-212 684.0
SHD3_k127_5097918_1 Transcriptional regulator, Crp Fnr family K01420 - - 0.0000000000000000000000000004573 122.0
SHD3_k127_5097918_2 Serine threonine protein kinase K08884 - 2.7.11.1 0.0000004439 56.0
SHD3_k127_5098346_0 PhoD-like phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000001341 235.0
SHD3_k127_5104312_0 Alpha-2-Macroglobulin K06894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004124 542.0
SHD3_k127_5104312_1 PFAM glycosyl transferase family 51 K05367 - 2.4.1.129 0.000000000000000000000006038 113.0
SHD3_k127_5109750_0 domain protein K07260 - 3.4.17.14 0.0000000000000000000000000000002427 143.0
SHD3_k127_5109750_1 guanyl-nucleotide exchange factor activity - - - 0.00001795 58.0
SHD3_k127_5116919_0 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000001562 207.0
SHD3_k127_5116919_1 Helix-turn-helix XRE-family like proteins K07726 - - 0.00000000000000000000001288 106.0
SHD3_k127_5119692_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane K01546 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0008556,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030312,GO:0030955,GO:0031004,GO:0031224,GO:0031226,GO:0031420,GO:0032991,GO:0034220,GO:0042623,GO:0042625,GO:0042626,GO:0043167,GO:0043169,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0071944,GO:0090533,GO:0090662,GO:0098533,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1902494,GO:1902495,GO:1904949,GO:1990351 3.6.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008583 506.0
SHD3_k127_5119692_1 Belongs to the LDH MDH superfamily K00024 - 1.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006983 374.0
SHD3_k127_5119692_2 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.00000000000000000000000000000000001408 146.0
SHD3_k127_5119692_3 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000009049 126.0
SHD3_k127_5119692_4 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000001483 85.0
SHD3_k127_5122133_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 555.0
SHD3_k127_5122133_1 Transcriptional regulator - - - 0.0000000000000000000000000000007966 137.0
SHD3_k127_5122133_2 MoaE protein K03635,K21142 - 2.8.1.12 0.00000000000000000000007969 106.0
SHD3_k127_5126602_0 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000001318 231.0
SHD3_k127_5126602_1 PFAM histidine triad (HIT) protein K19710 - 2.7.7.53 0.0000000000000000000000000002649 115.0
SHD3_k127_5126602_2 LytR cell envelope-related transcriptional attenuator - - - 0.00000008098 59.0
SHD3_k127_5136122_0 ATP synthase alpha/beta family, beta-barrel domain K02412 - 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001538 532.0
SHD3_k127_5136122_1 Bacterial regulatory protein, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 329.0
SHD3_k127_5136122_10 Flagellar assembly protein FliH K02411 - - 0.000000000005141 77.0
SHD3_k127_5136122_11 Flagellar FliJ protein K02413 - - 0.0006963 48.0
SHD3_k127_5136122_2 PFAM flagellin domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001417 291.0
SHD3_k127_5136122_3 FliG N-terminal domain K02410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000008148 263.0
SHD3_k127_5136122_4 The M ring may be actively involved in energy transduction K02409 - - 0.00000000000000000000000000000000000000000000000000000000000000000002339 251.0
SHD3_k127_5136122_5 Flagellar protein FlaF K06602 - - 0.0000000000000000000000000005277 117.0
SHD3_k127_5136122_6 PFAM flagellar FlbT family protein K06601 - - 0.00000000000000000000000007778 111.0
SHD3_k127_5136122_7 Belongs to the flagella basal body rod proteins family K02388 - - 0.000000000000000000000002961 111.0
SHD3_k127_5136122_8 bacterial-type flagellum-dependent cell motility K02397 - - 0.0000000000000000001703 99.0
SHD3_k127_5136122_9 Flagellar hook-basal body complex protein FliE K02408 - - 0.00000000000000001616 85.0
SHD3_k127_5137196_0 Helix-hairpin-helix motif K02237 - - 0.000000000000000000000000000000000000000000000000000000001872 219.0
SHD3_k127_5137196_1 Lamin Tail Domain K07004 - - 0.0000000000000000000000000000000000000000000000009082 196.0
SHD3_k127_5137196_2 photosystem II stabilization K02237 - - 0.0000000000000000000000000000000000007495 156.0
SHD3_k127_5137196_3 PFAM PKD domain containing protein - - - 0.0000000000000000000000005361 121.0
SHD3_k127_5137196_4 Carbohydrate binding module (family 6) - - - 0.00008687 55.0
SHD3_k127_5139388_0 40-residue YVTN family beta-propeller repeat - - - 0.000000000000000000000003225 121.0
SHD3_k127_5139388_1 cellulose binding - - - 0.0000002419 65.0
SHD3_k127_5139388_2 Mo-co oxidoreductase dimerisation domain - - - 0.000003796 61.0
SHD3_k127_5142472_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 5.33e-241 778.0
SHD3_k127_5142472_1 THUMP K07444,K12297 - 2.1.1.173,2.1.1.264 0.00000000000000000000000000000000000000000000000000000000000000000001364 248.0
SHD3_k127_5142472_2 BON domain - - - 0.00000000000000000005397 100.0
SHD3_k127_5145503_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002966 501.0
SHD3_k127_5145503_1 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000002083 191.0
SHD3_k127_5145503_2 PemK-like, MazF-like toxin of type II toxin-antitoxin system K07171 - - 0.00000000000000000000000000000000000000000000001425 172.0
SHD3_k127_5145503_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000000000000007037 188.0
SHD3_k127_5145503_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.0000000000000000000000000000000000000009926 156.0
SHD3_k127_5145503_5 Thioredoxin-like [2Fe-2S] ferredoxin K00334,K00335 - 1.6.5.3 0.000000000000000000000000000000000000001308 155.0
SHD3_k127_5145503_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.3 0.00000000000000000000000000000000000001585 151.0
SHD3_k127_5145503_7 PFAM SpoVT AbrB domain protein K07172 - - 0.0000000000000000002228 90.0
SHD3_k127_5145503_8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21562 - - 0.0000000000003178 79.0
SHD3_k127_5159409_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 449.0
SHD3_k127_5159409_1 Biotin-lipoyl like K02005 - - 0.00000000000000000000000002291 120.0
SHD3_k127_5160435_1 outer membrane protein protective antigen - - - 0.0001829 54.0
SHD3_k127_5164283_0 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000002987 229.0
SHD3_k127_5164283_1 COG0534 Na -driven multidrug efflux pump K03327 - - 0.00000000000000000000000000000000000000000000000000004121 196.0
SHD3_k127_516470_0 Chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004021 323.0
SHD3_k127_516470_1 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007912 277.0
SHD3_k127_516470_2 Di-iron-containing protein involved in the repair of iron-sulfur clusters K07322 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001477 254.0
SHD3_k127_516470_3 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000000000000000000000003689 160.0
SHD3_k127_5165942_0 NiFe/NiFeSe hydrogenase small subunit C-terminal K06282 - 1.12.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003733 308.0
SHD3_k127_5166277_0 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 335.0
SHD3_k127_5166277_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003989 288.0
SHD3_k127_5166277_2 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000001919 111.0
SHD3_k127_5166277_3 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.0000000000000002596 85.0
SHD3_k127_5166277_4 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000009018 71.0
SHD3_k127_5166518_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 586.0
SHD3_k127_5166518_1 Type II/IV secretion system protein K02669 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 403.0
SHD3_k127_5166518_10 Putative zinc-finger - - - 0.0002068 51.0
SHD3_k127_5166518_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002629 302.0
SHD3_k127_5166518_3 Permease YjgP YjgQ family protein K07091,K11720 GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015221,GO:0015399,GO:0015405,GO:0015437,GO:0015920,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0032991,GO:0033036,GO:0034040,GO:0042623,GO:0042626,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098533,GO:0098796,GO:0098797,GO:1901264,GO:1901505,GO:1902494,GO:1902495,GO:1904949,GO:1990351 - 0.0000000000000000000000000000000000000000000000000000000000000000000000001006 262.0
SHD3_k127_5166518_4 Permease YjgP YjgQ K11720 - - 0.000000000000000000000000000000000000000000000000000000166 207.0
SHD3_k127_5166518_5 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000001085 158.0
SHD3_k127_5166518_6 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K00627,K01571,K02160 - 2.3.1.12,4.1.1.3 0.000000000000000000000000000000000000001418 151.0
SHD3_k127_5166518_7 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000000009013 147.0
SHD3_k127_5166518_8 Belongs to the ComB family K05979 - 3.1.3.71 0.000000000000000000000000000000002339 146.0
SHD3_k127_5166518_9 Belongs to the peptidase S1C family K04771 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0017171,GO:0019538,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.21.107 0.0000000000000000000000000003427 129.0
SHD3_k127_5173166_0 Mo-molybdopterin cofactor biosynthetic process K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000001919 246.0
SHD3_k127_5173166_1 Amidohydrolase family K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000002669 223.0
SHD3_k127_5173166_2 domain protein - - - 0.0000000000000000000000000000002137 136.0
SHD3_k127_5179660_0 - - - - 0.0000000004127 70.0
SHD3_k127_5180472_0 COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster K06877 GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 598.0
SHD3_k127_5180472_1 Anthranilate synthase component I, N terminal region K01657,K01665,K13950 - 2.6.1.85,4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 366.0
SHD3_k127_5180472_10 Redoxin - - - 0.000003578 49.0
SHD3_k127_5180472_11 - - - - 0.000003766 56.0
SHD3_k127_5180472_2 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 332.0
SHD3_k127_5180472_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001215 279.0
SHD3_k127_5180472_4 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004794 268.0
SHD3_k127_5180472_5 PFAM Adenosine AMP deaminase K01488,K18286 - 3.5.4.4,3.5.4.40 0.00000000000000000000000000000000000000000000000000002021 211.0
SHD3_k127_5180472_6 RNase_H superfamily K07502 - - 0.00000000000000000000000000000009767 136.0
SHD3_k127_5180472_7 B12 binding domain - - - 0.00000000000000000000000005045 120.0
SHD3_k127_5180472_8 Redoxin - - - 0.00000000000000000000006257 102.0
SHD3_k127_5180472_9 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000006967 85.0
SHD3_k127_5185799_0 regulation of microtubule-based process K06990 - - 0.000000000000000000000000634 108.0
SHD3_k127_5185799_1 Transglutaminase-like superfamily - - - 0.0000000000000001363 92.0
SHD3_k127_5186441_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000675 280.0
SHD3_k127_5186441_1 Cytochrome c554 and c-prime K03620 - - 0.00000000000000000000000000000000000000000000000000000000003086 221.0
SHD3_k127_5186441_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000002114 167.0
SHD3_k127_5186441_3 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000002233 104.0
SHD3_k127_5186441_4 Putative bacterial lipoprotein (DUF799) - - - 0.0000000000000000003175 94.0
SHD3_k127_5186441_5 zinc ion binding K11997 - - 0.00000000000000007561 93.0
SHD3_k127_5186441_6 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.000000001758 69.0
SHD3_k127_5187376_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K12976,K22110 - - 0.000002442 60.0
SHD3_k127_5207695_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002588 394.0
SHD3_k127_5207695_1 PFAM Mo-co oxidoreductase dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 349.0
SHD3_k127_5207695_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000001747 241.0
SHD3_k127_5218535_0 sporulation initiation inhibitor protein Soj K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003635 317.0
SHD3_k127_5218535_1 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008543 314.0
SHD3_k127_5218535_2 Multi-sensor signal transduction histidine kinase K07710 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002568 291.0
SHD3_k127_5218535_3 Belongs to the ParB family K03497 GO:0005575,GO:0005622,GO:0005623,GO:0007059,GO:0008150,GO:0009295,GO:0009987,GO:0022603,GO:0042173,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0043937,GO:0043938,GO:0044424,GO:0044464,GO:0045595,GO:0045597,GO:0045881,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0065007 - 0.00000000000000000000000000000000000000000000000000000000000000000000004933 250.0
SHD3_k127_5218535_4 two component, sigma54 specific, transcriptional regulator, Fis family K02481,K07713 - - 0.00000000000000000000000000000000007608 138.0
SHD3_k127_5218535_5 Polymer-forming cytoskeletal - - - 0.000000000000000007542 89.0
SHD3_k127_5224771_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000323 471.0
SHD3_k127_5224771_1 ATP synthesis coupled electron transport K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 312.0
SHD3_k127_5225546_0 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003037 402.0
SHD3_k127_5225546_1 - - - - 0.0000000000000000000006097 109.0
SHD3_k127_5225546_2 Uracil DNA glycosylase superfamily K20813 GO:0000700,GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008263,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097507,GO:0097508,GO:0097509,GO:0140097,GO:1901360 3.2.2.29 0.00000000000000000007956 90.0
SHD3_k127_5225927_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000001554 254.0
SHD3_k127_5225927_1 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.0000000000000000000000000000000000000000000000000000000002453 211.0
SHD3_k127_5225927_2 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ K11910 - - 0.000000000000000000000000000000000000004085 158.0
SHD3_k127_5229687_0 DNA topoisomerase type I activity K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 375.0
SHD3_k127_5229687_1 Domain of unknown function (DUF892) - - - 0.00000000000000000000000000000000000000000000002524 177.0
SHD3_k127_5231434_0 glycoside hydrolase family 2 sugar binding - - - 2.18e-208 700.0
SHD3_k127_5231434_1 PFAM UDP-galactopyranose mutase, C-terminal K01854 - 5.4.99.9 1.934e-196 621.0
SHD3_k127_5231434_2 PFAM UDP-galactopyranose mutase, C-terminal K01854 - 5.4.99.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 475.0
SHD3_k127_5231434_3 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008332 434.0
SHD3_k127_5231434_4 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067,K05350 - 1.1.1.133,3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004387 351.0
SHD3_k127_5231434_5 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001718 313.0
SHD3_k127_5231434_6 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.000002675 49.0
SHD3_k127_5234235_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 2.085e-197 619.0
SHD3_k127_5234235_1 Elongation factor Tu domain 2 K03833 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007268 526.0
SHD3_k127_5234235_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005923 464.0
SHD3_k127_5234235_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001279 400.0
SHD3_k127_5234235_4 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002003 377.0
SHD3_k127_5234235_5 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004874 256.0
SHD3_k127_5234235_6 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.0000000000000000000000000000000000000000000000000004148 197.0
SHD3_k127_5234235_7 Binds the 23S rRNA K02909 - - 0.00000000000000000000000009123 120.0
SHD3_k127_52425_0 Ornithine cyclodeaminase/mu-crystallin family - - - 0.0000000000001275 76.0
SHD3_k127_5249523_0 Abc transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000001787 215.0
SHD3_k127_5249523_1 PFAM periplasmic binding protein K02016 - - 0.000000000000000000000000000000000000000706 158.0
SHD3_k127_525909_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 449.0
SHD3_k127_525909_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 366.0
SHD3_k127_525909_2 dTDP-4-dehydrorhamnose 3,5-epimerase activity K01790 - 5.1.3.13 0.000000000000000000000000000000000000000000000000000000003974 204.0
SHD3_k127_525909_3 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.0000000000000000000000000000000000000009231 164.0
SHD3_k127_5278170_0 anaphase-promoting complex binding - - - 0.000132 55.0
SHD3_k127_528572_0 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003666 487.0
SHD3_k127_528572_1 long-chain fatty acid transporting porin activity K06076 - - 0.00001692 55.0
SHD3_k127_5287032_0 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000000001439 157.0
SHD3_k127_5287032_1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000000000000002961 105.0
SHD3_k127_5288040_0 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 612.0
SHD3_k127_5288040_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 441.0
SHD3_k127_5288040_2 PRC-barrel domain - - - 0.0000000000000000000000000000000000002251 144.0
SHD3_k127_5288040_3 - - - - 0.000000000000000000000001154 106.0
SHD3_k127_5288040_4 hyperosmotic response - - - 0.0000000000000000000001531 111.0
SHD3_k127_5288040_5 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter, MnhA subunit K00341 - 1.6.5.3 0.0000000000000005618 82.0
SHD3_k127_5293963_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 1.375e-266 857.0
SHD3_k127_5295148_0 Domain of unknown function (DUF4386) - - - 0.00000000000000000000000000000000000000000000000000000000000000000004767 239.0
SHD3_k127_5295148_1 ASCH - - - 0.000000000000000000000000000000000000000000000000004361 194.0
SHD3_k127_5295148_2 Protein of unknown function (DUF1697) - - - 0.000000000000000000000000000000000000000000004462 169.0
SHD3_k127_5295148_3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.00000000000000000000000000000000000000003833 156.0
SHD3_k127_5310519_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000003078 199.0
SHD3_k127_5310519_1 curli production assembly transport component CsgG K04087 - - 0.00000000000000000000000000000283 135.0
SHD3_k127_5310519_2 - - - - 0.000000004842 61.0
SHD3_k127_5320693_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 318.0
SHD3_k127_5320693_1 Belongs to the peptidase S8 family - - - 0.000000001052 71.0
SHD3_k127_5320693_2 COG3291 FOG PKD repeat - - - 0.000725 52.0
SHD3_k127_5321369_0 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008449 257.0
SHD3_k127_5321369_1 ABC-type transport system involved in multi-copper enzyme maturation, permease component - - - 0.000000000000000000000000000000000000000000008333 180.0
SHD3_k127_5321369_2 peptidyl-tyrosine sulfation - - - 0.000000000000000000000006637 113.0
SHD3_k127_5321369_3 Type II secretory pathway, prepilin signal peptidase PulO and related K02654 - 3.4.23.43 0.00000000000003256 73.0
SHD3_k127_5321369_4 Pfam:N_methyl_2 K02456 - - 0.00000000007669 70.0
SHD3_k127_5321369_5 Prokaryotic N-terminal methylation motif K02456 - - 0.000000000156 69.0
SHD3_k127_5326105_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009945 576.0
SHD3_k127_5326105_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007678 362.0
SHD3_k127_5326105_2 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007052 346.0
SHD3_k127_5326105_3 Cytochrome C assembly protein - - - 0.0000000000000000000000000000000000000004374 160.0
SHD3_k127_5326105_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00330 - 1.6.5.3 0.000000000000000000000000000000002875 133.0
SHD3_k127_5326105_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000001568 109.0
SHD3_k127_5326105_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.0000000000000000000000016 113.0
SHD3_k127_5331803_0 cellulase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000306 293.0
SHD3_k127_5332763_0 aconitate hydratase K01681 - 4.2.1.3 5.399e-217 683.0
SHD3_k127_5332763_1 siderophore transport K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007248 552.0
SHD3_k127_5332763_10 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 GO:0000270,GO:0003674,GO:0003824,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016740,GO:0016757,GO:0016758,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0050511,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000005558 281.0
SHD3_k127_5332763_11 Belongs to the SEDS family K03588 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000009895 282.0
SHD3_k127_5332763_12 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000009684 175.0
SHD3_k127_5332763_13 HEPN domain - - - 0.00000000000000000000000000000000000114 143.0
SHD3_k127_5332763_14 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000003141 91.0
SHD3_k127_5332763_15 Cell division protein FtsQ K03589 - - 0.00000006947 66.0
SHD3_k127_5332763_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009151 518.0
SHD3_k127_5332763_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008963,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0030203,GO:0034645,GO:0040007,GO:0042546,GO:0042802,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044464,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 460.0
SHD3_k127_5332763_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007637 448.0
SHD3_k127_5332763_5 Protein kinase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 389.0
SHD3_k127_5332763_6 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006787 387.0
SHD3_k127_5332763_7 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 396.0
SHD3_k127_5332763_8 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003589 342.0
SHD3_k127_5332763_9 Domain of Unknown Function with PDB structure (DUF3857) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001561 295.0
SHD3_k127_5340356_0 Asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.000000000000000000000000000000000007988 139.0
SHD3_k127_5340356_1 Protein of unknown function (DUF2723) - - - 0.00000000000000000000000000003748 132.0
SHD3_k127_5341141_0 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000001342 228.0
SHD3_k127_5341141_1 TIGRFAM asparagine synthase (glutamine-hydrolyzing) K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000003048 205.0
SHD3_k127_5341141_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000002507 98.0
SHD3_k127_5348290_0 TLC ATP/ADP transporter K03301 - - 0.000000000000000000000000000000000000000000000000000000002173 228.0
SHD3_k127_5348290_1 cyclic nucleotide binding K00384,K01999,K07001,K10914 - 1.8.1.9 0.00000000001211 73.0
SHD3_k127_5349335_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 7.826e-199 632.0
SHD3_k127_5349335_1 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.00000000000000000000000000000000000000000000000000002259 210.0
SHD3_k127_5349335_2 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000001972 154.0
SHD3_k127_5349335_3 Glucose-6-phosphate dehydrogenase subunit - - - 0.00000000000000000000000003879 126.0
SHD3_k127_5349335_5 Belongs to the LOG family K06966 - 3.2.2.10 0.0009201 45.0
SHD3_k127_5350300_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07787 - - 0.0 1537.0
SHD3_k127_5350300_1 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000001699 237.0
SHD3_k127_5350300_2 Protein of unknown function (DUF3347) - - - 0.000000000005067 75.0
SHD3_k127_5362316_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008866 292.0
SHD3_k127_5362316_1 - - - - 0.00000000000000005733 89.0
SHD3_k127_5362316_2 PFAM NHL repeat containing protein - - - 0.0008502 49.0
SHD3_k127_5369695_0 ABC transporter C-terminal domain K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004999 467.0
SHD3_k127_5369695_1 peptide catabolic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000004556 242.0
SHD3_k127_5369695_2 Parallel beta-helix repeats - - - 0.00001975 55.0
SHD3_k127_5370766_0 Belongs to the aldehyde dehydrogenase family K00128,K00138 - 1.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001812 585.0
SHD3_k127_5370766_1 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000348 372.0
SHD3_k127_5370766_2 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 351.0
SHD3_k127_5370766_3 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000003049 222.0
SHD3_k127_5370766_4 PFAM Enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000003279 218.0
SHD3_k127_5370766_5 PFAM Appr-1-p processing domain protein - - - 0.00000000000000000000000000000000000000000000001943 176.0
SHD3_k127_5370766_6 SCO1/SenC K07152,K08976 - - 0.00000000000000000000000000000000000000000001646 166.0
SHD3_k127_5370766_7 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0007 43.0
SHD3_k127_5377858_0 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 3.43e-242 771.0
SHD3_k127_5377858_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 408.0
SHD3_k127_5377858_2 Universal stress protein family - - - 0.00000000000000000009498 94.0
SHD3_k127_5379813_0 Respiratory-chain NADH dehydrogenase, 30 Kd subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 556.0
SHD3_k127_5379813_1 NADH ubiquinone oxidoreductase, 20 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002204 317.0
SHD3_k127_5379813_2 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000008991 139.0
SHD3_k127_5384900_0 aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 573.0
SHD3_k127_5384900_1 oligosaccharyl transferase activity - - - 0.000000000000000000000000003381 128.0
SHD3_k127_5391070_0 Phospholipase/Carboxylesterase K06999 - - 0.0000003775 54.0
SHD3_k127_5395926_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002999 519.0
SHD3_k127_5395926_1 lactate metabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 496.0
SHD3_k127_5395926_2 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000394 273.0
SHD3_k127_5395926_3 DsrC like protein K11179 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000006321 159.0
SHD3_k127_5395926_4 tRNA 3'-trailer cleavage K00784,K01120 - 3.1.26.11,3.1.4.17 0.00000000000000000000001626 104.0
SHD3_k127_5395926_5 nitrate reductase activity - - - 0.00000000000000007595 91.0
SHD3_k127_5395926_6 Required for flagellar hook formation. May act as a scaffolding protein K02389 - - 0.00009057 54.0
SHD3_k127_5398791_0 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003217 291.0
SHD3_k127_5398791_1 Stage II sporulation protein K06381 - - 0.000004303 58.0
SHD3_k127_5404624_0 pfkB family carbohydrate kinase K00852 - 2.7.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000009157 265.0
SHD3_k127_5404624_1 Protein of unknown function (DUF3891) - - - 0.00000000000000000000000000000000000000000000000000000000000000002475 232.0
SHD3_k127_5404624_2 PFAM Rhomboid family protein K19225 - 3.4.21.105 0.0000000000000000000000000000000000005251 153.0
SHD3_k127_5404624_3 chromosome segregation K03497 - - 0.0000000000000000000000000000002218 133.0
SHD3_k127_5404624_4 peptidyl-tyrosine sulfation - - - 0.000000000000000000002737 108.0
SHD3_k127_5404624_5 Carbon-nitrogen hydrolase - - - 0.000000005417 68.0
SHD3_k127_5414459_0 pfam psp1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000003311 251.0
SHD3_k127_5414459_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000004589 231.0
SHD3_k127_5414459_2 'dna polymerase iii K02341 - 2.7.7.7 0.000000000000000000000000000000000009102 150.0
SHD3_k127_54220_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 5.681e-264 827.0
SHD3_k127_54220_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 410.0
SHD3_k127_54220_2 Lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000003046 184.0
SHD3_k127_54220_3 endoribonuclease L-PSP K09022 - 3.5.99.10 0.000000000000000000000000000000001491 149.0
SHD3_k127_54220_4 Protein of unknown function (DUF3467) - - - 0.00000000000000000000000000000001412 130.0
SHD3_k127_54220_5 Histidine kinase - - - 0.00000000000000000000000000002241 133.0
SHD3_k127_54220_6 4Fe-4S dicluster domain - - - 0.0000000000000000000000003725 107.0
SHD3_k127_54220_7 - - - - 0.0004874 46.0
SHD3_k127_542447_0 Carboxypeptidase regulatory-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 496.0
SHD3_k127_542447_1 MotA TolQ ExbB proton channel K03561,K03562 - - 0.000000000000000000000000000000000000000000000000000001598 200.0
SHD3_k127_542447_2 TIGRFAM TonB K03832 - - 0.000000000000000000000000000000004962 137.0
SHD3_k127_542447_3 PFAM Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000007244 104.0
SHD3_k127_542447_4 Transcriptional regulator PadR-like family - - - 0.00000000000000000004927 93.0
SHD3_k127_542447_5 Tetratricopeptide repeat - - - 0.0000000000002371 82.0
SHD3_k127_542447_6 PFAM Biopolymer transport protein ExbD TolR K03559,K03560 - - 0.00001025 51.0
SHD3_k127_5425282_0 GTP-binding protein TypA K06207 - - 7.392e-259 810.0
SHD3_k127_5425282_1 acyl-CoA dehydrogenase activity K00252 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 1.3.8.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 531.0
SHD3_k127_5425282_2 5'-nucleotidase - - - 0.0000000000000000000000000000000003602 146.0
SHD3_k127_5425282_3 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.0000000000000002217 92.0
SHD3_k127_5432976_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 571.0
SHD3_k127_5432976_1 Phosphate transporter family K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002272 419.0
SHD3_k127_5432976_10 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000000002582 200.0
SHD3_k127_5432976_11 peptidyl-tyrosine sulfation - - - 0.00000000000000000000000007122 124.0
SHD3_k127_5432976_12 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000001251 96.0
SHD3_k127_5432976_13 Protein of unknown function (DUF3426) - - - 0.0000006137 57.0
SHD3_k127_5432976_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 374.0
SHD3_k127_5432976_3 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 355.0
SHD3_k127_5432976_4 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 329.0
SHD3_k127_5432976_5 transport, permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008556 319.0
SHD3_k127_5432976_6 transport, permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001045 319.0
SHD3_k127_5432976_7 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001455 280.0
SHD3_k127_5432976_8 DJ-1/PfpI family K05520 - 3.5.1.124 0.0000000000000000000000000000000000000000000000000000000000000000000001166 248.0
SHD3_k127_5432976_9 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0042221,GO:0044464,GO:0046677,GO:0050896,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000004962 213.0
SHD3_k127_5439937_0 PKD domain - - - 0.0000002647 61.0
SHD3_k127_5439937_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.0000004521 61.0
SHD3_k127_5452655_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000007127 244.0
SHD3_k127_5452655_1 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000003232 125.0
SHD3_k127_5452655_2 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.00000000000549 73.0
SHD3_k127_54595_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 441.0
SHD3_k127_54595_1 Subtilase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005013 290.0
SHD3_k127_54595_2 Glycosyltransferase family 87 - - - 0.0000000000000000000000000000000000000005613 166.0
SHD3_k127_54595_3 MoeA C-terminal region (domain IV) K03750,K07219 - 2.10.1.1 0.0000000000000000000000000000000000008232 143.0
SHD3_k127_54595_4 PKD domain K07282 - - 0.0000000000001525 85.0
SHD3_k127_5469711_0 AMP-binding enzyme C-terminal domain K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000003675 250.0
SHD3_k127_5469711_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000006661 254.0
SHD3_k127_5479239_0 PQQ enzyme repeat - - - 0.0000000000000000371 95.0
SHD3_k127_5482636_0 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 453.0
SHD3_k127_5482636_1 PFAM phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 310.0
SHD3_k127_5484773_0 CHAT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009808 319.0
SHD3_k127_5484773_1 Belongs to the peptidase S8 family K08651,K14743 - 3.4.21.66 0.000000000000000000000000000000000000000000000000003344 200.0
SHD3_k127_5484773_2 Sigma-70 region 2 - - - 0.000000000000000006558 88.0
SHD3_k127_54952_0 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 417.0
SHD3_k127_54952_1 arabinogalactan endo-1,4-beta-galactosidase activity - - - 0.000000004451 71.0
SHD3_k127_5496578_0 xyloglucan:xyloglucosyl transferase activity K21449 - - 0.0000000000000000000000000000000000000004711 167.0
SHD3_k127_5496578_1 extracellular matrix structural constituent - - - 0.00000001889 67.0
SHD3_k127_5496578_2 - - - - 0.000005206 49.0
SHD3_k127_5520306_0 Male sterility protein K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 356.0
SHD3_k127_5520306_1 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000008664 167.0
SHD3_k127_5520306_2 polysaccharide deacetylase - - - 0.00000000000005347 77.0
SHD3_k127_5520306_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.00000000004642 76.0
SHD3_k127_5529647_0 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 1.61e-207 661.0
SHD3_k127_5534260_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 348.0
SHD3_k127_5534260_1 Lipocalin-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 333.0
SHD3_k127_5534260_2 Glycine zipper - - - 0.0002068 51.0
SHD3_k127_5535941_0 Sialate O-acetylesterase K05970 - 3.1.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003082 401.0
SHD3_k127_5535941_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000002172 111.0
SHD3_k127_5535941_2 Thioredoxin-like - - - 0.000004853 51.0
SHD3_k127_5543181_0 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000005978 259.0
SHD3_k127_554610_0 lipid kinase activity - - - 0.0000000000000000000000000000000000000000000002419 180.0
SHD3_k127_554610_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000000000000000000001402 166.0
SHD3_k127_554610_2 PFAM Phosphoglycerate mutase K02226,K22305 - 3.1.3.3,3.1.3.73 0.0000000000000000000000000000001334 132.0
SHD3_k127_554610_3 nitroreductase - - - 0.0000000000000009141 79.0
SHD3_k127_5574285_0 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000008579 112.0
SHD3_k127_5574285_1 arabinogalactan endo-1,4-beta-galactosidase activity - - - 0.00000009765 64.0
SHD3_k127_5574285_2 TonB C terminal K03832 - - 0.0000001172 58.0
SHD3_k127_5574285_3 ompA family - - - 0.0003393 52.0
SHD3_k127_5671111_0 FAD binding domain K00103,K00279 - 1.1.3.8,1.5.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 351.0
SHD3_k127_5671111_1 Penicillin amidase K01434 - 3.5.1.11 0.00008172 47.0
SHD3_k127_5698968_0 - - - - 0.0000000000000008486 89.0
SHD3_k127_574120_0 Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX K03405 - 6.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002987 597.0
SHD3_k127_574120_1 von Willebrand factor (vWF) type A domain K07114 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005541 410.0
SHD3_k127_574120_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000009477 132.0
SHD3_k127_581018_0 imidazolonepropionase activity K01443 - 3.5.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 514.0
SHD3_k127_583651_0 Belongs to the peptidase M16 family K07263 - - 3.41e-320 1006.0
SHD3_k127_584661_0 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000208 180.0
SHD3_k127_584661_1 Stress responsive alpha-beta barrel - - - 0.00000000000000000000000000007115 117.0
SHD3_k127_587763_0 Chemotaxis phosphatase CheX K03409 - - 0.00000000000002673 83.0
SHD3_k127_587763_1 cheY-homologous receiver domain K03413 - - 0.000009252 51.0
SHD3_k127_596035_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001302 429.0
SHD3_k127_596035_1 major pilin protein fima - - - 0.000000000000000000000000000000000000000000000000000000000000002107 225.0
SHD3_k127_596035_2 Chromate transporter K07240 - - 0.00000000000000000000000002205 121.0
SHD3_k127_601958_0 Tetratricopeptide repeat - - - 0.000000000000000000000000003294 129.0
SHD3_k127_60661_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000885 398.0
SHD3_k127_60661_1 HlyD family secretion protein - - - 0.000000000000000000000005649 111.0
SHD3_k127_607037_0 PFAM peptidase M24 - - - 0.0000000000000000000000000000000000000000000000001959 185.0
SHD3_k127_607037_1 Cytochrome c - - - 0.00000000000003847 83.0
SHD3_k127_611314_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0031668,GO:0033554,GO:0050896,GO:0051716,GO:0071496 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006789 434.0
SHD3_k127_611314_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003614 357.0
SHD3_k127_611314_2 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.00000000000000000000003522 106.0
SHD3_k127_611314_3 Protein of unknown function (DUF2905) - - - 0.00000000000000003157 85.0
SHD3_k127_619205_0 Aconitase C-terminal domain - - - 6.345e-293 926.0
SHD3_k127_619205_1 - - - - 0.000000000000000000000000001201 114.0
SHD3_k127_619205_2 WD-40 repeat - - - 0.000009692 58.0
SHD3_k127_62268_0 MgsA AAA+ ATPase C terminal K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 480.0
SHD3_k127_62268_1 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 394.0
SHD3_k127_62268_2 amino acid activation for nonribosomal peptide biosynthetic process K17713,K20952 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 381.0
SHD3_k127_62268_3 Peptidase family C25 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006615 354.0
SHD3_k127_62268_4 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007817 313.0
SHD3_k127_62268_5 His Kinase A (phosphoacceptor) domain K07710 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000004174 199.0
SHD3_k127_62268_6 COGs COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains K02481,K07714 - - 0.00000000000000009918 85.0
SHD3_k127_62268_7 protein secretion K09800 - - 0.000000000000001729 93.0
SHD3_k127_633774_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000001186 271.0
SHD3_k127_633774_1 Belongs to the ompA family - - - 0.0000000000008742 76.0
SHD3_k127_655012_0 Transcriptional regulator, Fis family - - - 3.728e-203 647.0
SHD3_k127_655012_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004273 241.0
SHD3_k127_655012_10 PFAM OmpA MotB domain protein K03640 - - 0.00005475 52.0
SHD3_k127_655012_11 Sigma factor PP2C-like phosphatases K07315 - 3.1.3.3 0.000104 48.0
SHD3_k127_655012_12 - - - - 0.0003054 47.0
SHD3_k127_655012_2 PFAM Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001228 242.0
SHD3_k127_655012_4 - - - - 0.00000000000000000000000000000136 125.0
SHD3_k127_655012_5 Periplasmic or secreted lipoprotein - - - 0.000000000000000007846 94.0
SHD3_k127_655012_6 Helix-turn-helix XRE-family like proteins K07729 - - 0.000000000000003698 77.0
SHD3_k127_655012_7 - - - - 0.000000000000006146 78.0
SHD3_k127_655012_8 - - - - 0.0000000000002101 79.0
SHD3_k127_655012_9 Membrane - - - 0.00001281 55.0
SHD3_k127_681109_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 5.165e-258 821.0
SHD3_k127_681109_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002371 572.0
SHD3_k127_681109_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.00000000000000000000000000000000000000000000000001243 195.0
SHD3_k127_681109_3 - - - - 0.000000000000000000000000000001294 124.0
SHD3_k127_681109_4 Hsp20/alpha crystallin family - - - 0.00000000000000000455 90.0
SHD3_k127_681109_5 PFAM glycosyl transferase family 9 K02843 - - 0.0000000000000007474 89.0
SHD3_k127_681109_6 transferase K02527 - 2.4.99.12,2.4.99.13,2.4.99.14,2.4.99.15 0.000009638 51.0
SHD3_k127_692293_0 - - - - 0.0000000004629 73.0
SHD3_k127_696636_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 466.0
SHD3_k127_696636_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 337.0
SHD3_k127_696636_2 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003335 296.0
SHD3_k127_696636_3 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009309 271.0
SHD3_k127_696636_4 TIGR00255 family - - - 0.000000000000000000000000000000000000000000000000000000000001287 232.0
SHD3_k127_696636_5 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000002581 209.0
SHD3_k127_696636_6 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.0000000000000000000000000000000000000000000002294 174.0
SHD3_k127_696636_7 Virulence factor Mce family protein K02067 - - 0.00000000000000000006452 101.0
SHD3_k127_696636_8 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000001666 68.0
SHD3_k127_696636_9 Fibronectin-binding protein - - - 0.00000004261 66.0
SHD3_k127_706819_0 Protein involved in cellulose biosynthesis - - - 0.0000000000000003535 90.0
SHD3_k127_706819_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000008022 69.0
SHD3_k127_706819_2 - - - - 0.0000003751 61.0
SHD3_k127_706819_3 Polysaccharide biosynthesis protein - - - 0.00004474 56.0
SHD3_k127_717129_0 Oxygen tolerance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003778 351.0
SHD3_k127_717129_1 Bacterial SH3 domain - - - 0.00000000000005224 76.0
SHD3_k127_723254_0 PFAM NAD dependent epimerase dehydratase family K01710 - 4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007624 405.0
SHD3_k127_723254_1 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002095 352.0
SHD3_k127_723254_10 PEP-CTERM exosortase 1-associated glycosyltransferase, Daro_2409 family protein - - - 0.00000000000000000000167 111.0
SHD3_k127_723254_11 COG0438 Glycosyltransferase - - - 0.0000000000005406 72.0
SHD3_k127_723254_2 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 334.0
SHD3_k127_723254_3 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001659 266.0
SHD3_k127_723254_4 Glycosyl transferase 4-like domain K12996 - - 0.00000000000000000000000000000000000000000000000000000000000000000001585 247.0
SHD3_k127_723254_5 Hexapeptide repeat of succinyl-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004676 239.0
SHD3_k127_723254_6 PFAM peptidase M24 - - - 0.000000000000000000000000000000000000000000000000000000000000000001687 240.0
SHD3_k127_723254_7 Iron-sulfur cluster-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003334 234.0
SHD3_k127_723254_8 extracellular polysaccharide biosynthetic process K01153,K05789,K07011,K16554 - 3.1.21.3 0.0000000000000000000000000000001365 139.0
SHD3_k127_723254_9 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000002837 126.0
SHD3_k127_725649_0 phosphoglycerate mutase K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 454.0
SHD3_k127_725649_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 357.0
SHD3_k127_725649_2 Metallopeptidase family M24 K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000001708 239.0
SHD3_k127_725649_3 B3/4 domain - - - 0.000000000000000000000000000000000000000000000002622 180.0
SHD3_k127_725649_4 membrane - - - 0.0000001271 65.0
SHD3_k127_726678_0 PFAM Uncharacterised protein family UPF0182 K09118 - - 4.852e-198 651.0
SHD3_k127_726678_1 Acyl-CoA dehydrogenase, N-terminal domain K00249 - 1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005589 418.0
SHD3_k127_726678_2 saccharopine dehydrogenase activity K19064 - 1.4.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 331.0
SHD3_k127_726678_3 TIGRFAM phosphohistidine phosphatase SixA K08296 - - 0.000000000000000001987 95.0
SHD3_k127_726678_4 - - - - 0.000001647 58.0
SHD3_k127_726678_5 Endonuclease I K07004 - - 0.0002709 51.0
SHD3_k127_730915_0 TonB-dependent receptor K16092 - - 0.00000000000000000000000000000000000009322 156.0
SHD3_k127_730915_1 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0030312,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0036211,GO:0040008,GO:0043085,GO:0043086,GO:0043170,GO:0043207,GO:0043388,GO:0043412,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0045893,GO:0045926,GO:0045935,GO:0046777,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051701,GO:0051704,GO:0051707,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0075136,GO:0080090,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 2.7.11.1 0.000000000000002484 88.0
SHD3_k127_734455_0 Dehydrogenase E1 component K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008635 299.0
SHD3_k127_734455_1 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002337 270.0
SHD3_k127_736628_0 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004549 265.0
SHD3_k127_736628_1 - - - - 0.0001362 52.0
SHD3_k127_736628_2 Galactose oxidase, central domain - - - 0.0003987 44.0
SHD3_k127_736970_0 aldehyde oxidase and xanthine dehydrogenase, a b hammerhead K03520 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001143 283.0
SHD3_k127_736970_1 COG0616 Periplasmic serine proteases (ClpP class) K04773 - - 0.000000000000000000000001122 116.0
SHD3_k127_738501_0 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system K01547 - 3.6.3.12 7.87e-228 713.0
SHD3_k127_738501_1 Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex K01548 - 3.6.3.12 0.0000000000000000000000000000000000000000000000000000000000000575 217.0
SHD3_k127_739709_0 TIGRFAM NADH-quinone oxidoreductase, chain G K00336 - 1.6.5.3 0.0 1026.0
SHD3_k127_739709_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 1.006e-223 709.0
SHD3_k127_739709_10 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000000003086 137.0
SHD3_k127_739709_2 Proton-conducting membrane transporter K00342 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0030964,GO:0031224,GO:0031226,GO:0032991,GO:0034220,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1902600,GO:1990204 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 607.0
SHD3_k127_739709_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003008 514.0
SHD3_k127_739709_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004693 456.0
SHD3_k127_739709_5 Sugar (and other) transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 423.0
SHD3_k127_739709_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0030964,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 309.0
SHD3_k127_739709_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain - - - 0.00000000000000000000000000000000000000000000000000000000000000004545 224.0
SHD3_k127_739709_8 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.0000000000000000000000000000000000000000000000001304 190.0
SHD3_k127_739709_9 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000001611 141.0
SHD3_k127_741367_0 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000004657 165.0
SHD3_k127_741367_1 PFAM CobQ CobB MinD ParA nucleotide binding domain - - - 0.00000000000000000000006264 109.0
SHD3_k127_741367_2 chain length determinant protein - - - 0.000005669 59.0
SHD3_k127_741367_3 - - - - 0.00002363 56.0
SHD3_k127_741367_4 PFAM Polysaccharide export protein - - - 0.0001275 48.0
SHD3_k127_742766_0 Molydopterin dinucleotide binding domain K08352 - 1.8.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002513 475.0
SHD3_k127_742766_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 299.0
SHD3_k127_742766_2 Cytochrome c554 and c-prime - - - 0.0000000000000000000000000000000000000003484 165.0
SHD3_k127_742766_3 Cytochrome c7 and related cytochrome c - - - 0.000000000000000000000001292 116.0
SHD3_k127_742766_4 PFAM response regulator receiver - - - 0.00006179 51.0
SHD3_k127_74683_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 475.0
SHD3_k127_74683_1 Major facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 478.0
SHD3_k127_74683_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007227 355.0
SHD3_k127_74683_3 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000002347 149.0
SHD3_k127_7480_0 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001824 315.0
SHD3_k127_7480_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000007391 205.0
SHD3_k127_7480_2 Nodulation protein S (NodS) - - - 0.00000000000000000000001833 109.0
SHD3_k127_760925_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 471.0
SHD3_k127_760925_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K13832 - 1.1.1.25,4.2.1.10 0.00000000000000000000000000000000000000000000000000000007276 214.0
SHD3_k127_760925_2 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000004959 132.0
SHD3_k127_762406_0 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005146 298.0
SHD3_k127_762406_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003109 264.0
SHD3_k127_762406_2 Acid phosphatase homologues - - - 0.0000000000000000000000000000000000114 147.0
SHD3_k127_763877_0 Zn_pept - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005389 514.0
SHD3_k127_765443_0 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004589 482.0
SHD3_k127_765443_1 The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis K00756,K00758 - 2.4.2.2,2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 293.0
SHD3_k127_765443_2 PFAM CMP dCMP deaminase zinc-binding K01489 - 3.5.4.5 0.00000000000000006083 95.0
SHD3_k127_765443_3 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00007865 48.0
SHD3_k127_769516_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576 1.1.1.267 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002659 369.0
SHD3_k127_769516_1 Ribosomal protein S2 K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 316.0
SHD3_k127_769516_10 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000001487 64.0
SHD3_k127_769516_2 Amino acid kinase family K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 313.0
SHD3_k127_769516_3 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003496 276.0
SHD3_k127_769516_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000863 262.0
SHD3_k127_769516_5 Peptidase family M50 K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000003467 251.0
SHD3_k127_769516_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0030312,GO:0032984,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000026 210.0
SHD3_k127_769516_7 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000006549 218.0
SHD3_k127_769516_8 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000004335 201.0
SHD3_k127_769516_9 Surface antigen K07277 - - 0.000000000000000000000000000000000000000000001435 187.0
SHD3_k127_770465_0 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008304 271.0
SHD3_k127_777699_0 Pyridoxal-dependent decarboxylase conserved domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 433.0
SHD3_k127_777699_1 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 307.0
SHD3_k127_777699_2 KaiB K08481 - - 0.000000000000000000000000000000000000002932 148.0
SHD3_k127_777699_3 KaiB K08481 - - 0.00000000000000000000000006554 114.0
SHD3_k127_777699_4 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0030312,GO:0040007,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0055114,GO:0071704,GO:0071944,GO:0072350 4.2.1.2 0.000004886 48.0
SHD3_k127_786208_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005887 596.0
SHD3_k127_786208_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006164 305.0
SHD3_k127_786208_2 protein conserved in bacteria K09800 - - 0.000000000000361 82.0
SHD3_k127_786208_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 6.3.5.6,6.3.5.7 0.00001591 57.0
SHD3_k127_786746_0 GDP-mannose 4,6 dehydratase K01710 - 4.2.1.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005114 456.0
SHD3_k127_786746_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 304.0
SHD3_k127_786746_2 lipid kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000001901 242.0
SHD3_k127_786746_3 PAS fold - - - 0.00000000000000000000000000000000000000000000000000000000000000006897 227.0
SHD3_k127_786746_4 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000003712 191.0
SHD3_k127_786746_5 PAS fold - - - 0.000000000000000000000000000000000728 142.0
SHD3_k127_786746_6 Heparinase II/III N-terminus - - - 0.000000000000000000004922 108.0
SHD3_k127_786746_7 Heparinase II/III-like protein - - - 0.000000004702 67.0
SHD3_k127_786760_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 320.0
SHD3_k127_786760_1 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000636 141.0
SHD3_k127_786760_2 PFAM Glycosyl transferase, group 1 K00754 - - 0.00003726 47.0
SHD3_k127_786808_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 569.0
SHD3_k127_786808_1 Polysaccharide biosynthesis protein K01784,K02473 - 5.1.3.2,5.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009149 335.0
SHD3_k127_786808_2 Belongs to the DegT DnrJ EryC1 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005022 288.0
SHD3_k127_78956_0 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005473 569.0
SHD3_k127_78956_1 Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007262 482.0
SHD3_k127_78956_2 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000000000000000000000001429 166.0
SHD3_k127_78956_3 Polysaccharide lyase family 4, domain II - - - 0.00000000000000000000000000000000001749 144.0
SHD3_k127_78956_4 Protein of unknown function (DUF3341) - - - 0.0000001855 57.0
SHD3_k127_817593_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 605.0
SHD3_k127_817593_1 MutL protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361 583.0
SHD3_k127_817593_2 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002735 436.0
SHD3_k127_817593_3 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 339.0
SHD3_k127_817593_4 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.0000000000000000000000000000000000000000008542 169.0
SHD3_k127_817593_5 - - - - 0.0000000000000000001546 95.0
SHD3_k127_817593_7 - - - - 0.000000002934 70.0
SHD3_k127_818450_0 Carbon-nitrogen hydrolase K03820 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007386 271.0
SHD3_k127_818450_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.000000000000000000000000000000000000000002333 164.0
SHD3_k127_821287_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000363 197.0
SHD3_k127_821287_1 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000004157 171.0
SHD3_k127_821287_2 Nucleotidyl transferase of unknown function (DUF2204) - - - 0.00000002654 56.0
SHD3_k127_821287_3 Uncharacterized conserved protein (DUF2304) K09153 - - 0.0001674 47.0
SHD3_k127_838522_0 Type VI secretion protein, EvpB/VC_A0108, tail sheath K11900 - - 0.000000000000000000000000000000007759 145.0
SHD3_k127_838522_1 TIGRFAM type VI secretion protein, EvpB VC_A0108 family - - - 0.0000000000000000000000002076 121.0
SHD3_k127_841101_0 Domains REC, sigma54 interaction, HTH8 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004644 403.0
SHD3_k127_841101_1 PFAM TrkA-C domain protein K11105 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001308 298.0
SHD3_k127_841101_2 phosphorelay sensor kinase activity K02668 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000001969 228.0
SHD3_k127_841101_3 Bacterial extracellular solute-binding protein K02020 - - 0.0000000000001475 85.0
SHD3_k127_844234_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008363 559.0
SHD3_k127_844234_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003569 518.0
SHD3_k127_844234_2 ABC-type transport system involved in lipoprotein release permease component K02004,K09808 GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008104,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0032991,GO:0033036,GO:0034613,GO:0044425,GO:0044459,GO:0044464,GO:0044872,GO:0044873,GO:0044874,GO:0051179,GO:0051641,GO:0070727,GO:0071944,GO:0072657,GO:0089705,GO:0098796,GO:0098797,GO:1990778 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 362.0
SHD3_k127_844234_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000000000000000000000000000001984 215.0
SHD3_k127_844234_4 Ribosomal subunit interface protein - - - 0.000000000000000000000002026 106.0
SHD3_k127_845616_0 Dehydrogenase K00248 - 1.3.8.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 417.0
SHD3_k127_846678_0 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 458.0
SHD3_k127_846678_1 Protein of unknown function (DUF2723) K16928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008385 429.0
SHD3_k127_846678_2 Polysaccharide biosynthesis protein K01784,K08679 - 5.1.3.2,5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 351.0
SHD3_k127_846678_3 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 335.0
SHD3_k127_846678_4 Nucleotidyl transferase K15669 - 2.7.7.71 0.0000000000000000000000000000000000000000000178 171.0
SHD3_k127_846678_5 Glycosyl transferases group 1 - - - 0.00000000000000000000000000007267 119.0
SHD3_k127_852127_0 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 353.0
SHD3_k127_852127_1 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.000000000000000000000000000000000000000000000000000000002617 213.0
SHD3_k127_852127_2 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000008809 83.0
SHD3_k127_855990_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 409.0
SHD3_k127_855990_1 Conserved TM helix - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001686 316.0
SHD3_k127_860867_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 2.102e-196 637.0
SHD3_k127_860867_1 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 368.0
SHD3_k127_865595_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 1307.0
SHD3_k127_868575_0 Radical SAM - - - 0.000000000000000000000000000000000004888 143.0
SHD3_k127_868575_1 OsmC-like protein K04063 - - 0.00000000000000000000000000000004658 126.0
SHD3_k127_868575_2 PrcB C-terminal - - - 0.000009908 55.0
SHD3_k127_874316_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000000000000000000002985 143.0
SHD3_k127_874316_1 Evidence 5 No homology to any previously reported sequences - - - 0.00000000002318 77.0
SHD3_k127_875104_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000158 225.0
SHD3_k127_875104_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000000000000000000000000004786 123.0
SHD3_k127_875104_3 Phospholipid methyltransferase - - - 0.0000000000004062 81.0
SHD3_k127_879600_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119 523.0
SHD3_k127_879600_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000876 257.0
SHD3_k127_879600_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000001681 196.0
SHD3_k127_879600_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000003107 128.0
SHD3_k127_879600_4 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000008703 117.0
SHD3_k127_879600_5 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000004114 107.0
SHD3_k127_879600_6 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000004483 108.0
SHD3_k127_879600_7 Belongs to the UPF0102 family K07460 - - 0.0000002995 57.0
SHD3_k127_889279_0 Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 3.474e-210 662.0
SHD3_k127_889279_1 succinate dehydrogenase K00241,K00247 - - 0.000000000000000000000000000000000000000000000000000001611 198.0
SHD3_k127_889279_2 Protein of unknown function (DUF3078) - - - 0.00002895 55.0
SHD3_k127_891094_0 Signal transducing histidine kinase, homodimeric domain K03407 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000466 322.0
SHD3_k127_891094_1 Chemotaxis protein methyltransferase K00575 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006479,GO:0006807,GO:0006935,GO:0008022,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0008983,GO:0009605,GO:0009987,GO:0010340,GO:0016020,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0032991,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051998,GO:0071704,GO:0071944,GO:0098561,GO:0140096,GO:1901564 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000000000001734 246.0
SHD3_k127_891094_2 Two component signalling adaptor domain K03408 - - 0.00000000000000000000000000000000000000000000002112 176.0
SHD3_k127_891094_3 CheD chemotactic sensory transduction K03411 - 3.5.1.44 0.000000000000000000000000000000000002803 153.0
SHD3_k127_891094_4 GGDEF domain K03413 - - 0.000000000000000000000186 105.0
SHD3_k127_891094_5 Chemotaxis phosphatase CheX - - - 0.00004585 53.0
SHD3_k127_898107_0 Putative glucoamylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 565.0
SHD3_k127_898107_1 ABC transporter substrate-binding protein K02027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 460.0
SHD3_k127_898107_2 PFAM sigma-54 factor interaction domain-containing protein K02481 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001942 396.0
SHD3_k127_898107_3 ABC-type sugar transport systems, permease components K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 376.0
SHD3_k127_898107_4 ABC-type sugar transport system, permease component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 318.0
SHD3_k127_898107_5 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000006558 217.0
SHD3_k127_898107_6 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000001798 156.0
SHD3_k127_898107_7 PFAM Glycoside hydrolase 15-related - - - 0.000000000000000000000000000000000002479 155.0
SHD3_k127_898107_8 OsmC-like protein - - - 0.00000000000000000000000000000000001574 140.0
SHD3_k127_898107_9 helix_turn_helix, arabinose operon control protein K07506 - - 0.0000288 53.0
SHD3_k127_901501_0 lysine biosynthetic process via aminoadipic acid - - - 4.515e-215 689.0
SHD3_k127_907165_0 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004443 435.0
SHD3_k127_907165_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001591 258.0
SHD3_k127_907165_2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.0000005898 53.0
SHD3_k127_908386_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 314.0
SHD3_k127_908386_1 PFAM Aminotransferase class I and II - - - 0.00000000000000000000000000000002929 129.0
SHD3_k127_908466_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000000000000000000000000001259 228.0
SHD3_k127_908466_1 - - - - 0.000000000000000000000000000000000000000003235 161.0
SHD3_k127_914795_0 cellulase activity K01179,K01361,K13277,K21449 - 3.2.1.4,3.4.21.96 0.0 1166.0
SHD3_k127_914795_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016053,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009984 444.0
SHD3_k127_914795_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000007831 114.0
SHD3_k127_914795_3 Protein of unknown function (DUF971) - - - 0.00000000000000000001048 99.0
SHD3_k127_914795_4 Belongs to the CinA family K03742 - 3.5.1.42 0.000000000000000005008 85.0
SHD3_k127_91715_0 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 295.0
SHD3_k127_91715_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005259 285.0
SHD3_k127_91715_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000001308 184.0
SHD3_k127_91715_3 Sporulation and spore germination - - - 0.000000000000243 78.0
SHD3_k127_91715_4 Ami_3 K01448 - 3.5.1.28 0.00000006874 60.0
SHD3_k127_920777_0 cAMP biosynthetic process - - - 0.00000000000000000000003588 113.0
SHD3_k127_920777_1 Curli production assembly/transport component CsgG - - - 0.0000000000004004 81.0
SHD3_k127_92296_0 Tricorn protease homolog K08676 - - 2.923e-311 990.0
SHD3_k127_92296_1 DeoC/LacD family aldolase K11645 - 4.1.2.13 0.000000000000000000000000000000000000000000000000000000000000000000000000009087 254.0
SHD3_k127_92296_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000002854 248.0
SHD3_k127_92296_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000567 66.0
SHD3_k127_92296_4 diguanylate cyclase - - - 0.0000006907 62.0
SHD3_k127_924909_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000005445 170.0
SHD3_k127_928407_0 Aerotolerance regulator N-terminal - - - 0.00000000000000000000000000000000000000000000000000000001709 218.0
SHD3_k127_928407_1 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.0000000000000000000000000000000000000000000000000000001845 222.0
SHD3_k127_928407_2 Tetratricopeptide repeat - - - 0.00000000000000000000000003825 122.0
SHD3_k127_928407_3 - - - - 0.000000007473 65.0
SHD3_k127_928407_5 Belongs to the peptidase S8 family - - - 0.0002086 55.0
SHD3_k127_929595_0 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 342.0
SHD3_k127_929595_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000003131 205.0
SHD3_k127_929595_2 Asparaginase K01424,K13051 - 3.4.19.5,3.5.1.1 0.00000000000000000000000000000000000000000000000000873 187.0
SHD3_k127_929595_3 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000002526 155.0
SHD3_k127_929595_4 Iron-sulphur cluster biosynthesis K15724 GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009061,GO:0009987,GO:0010467,GO:0015980,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0043167,GO:0043169,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0055114,GO:0071704,GO:0071840,GO:1901564 - 0.0000000000000000000000003048 109.0
SHD3_k127_929595_5 Flavin and coenzyme A sequestration protein dodecin K09165 - - 0.0000000000000000000192 105.0
SHD3_k127_931592_0 serine-type peptidase activity K01303 - 3.4.19.1 4.302e-210 676.0
SHD3_k127_931592_1 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.0000000000000000000000000000000000000000000000000000000000003614 217.0
SHD3_k127_934806_0 ABC 3 transport family K09816,K09819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006049 354.0
SHD3_k127_934806_1 ABC transporter K09817 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 291.0
SHD3_k127_934806_2 Zinc-uptake complex component A periplasmic K02077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009024 288.0
SHD3_k127_934806_3 Belongs to the Fur family K03711 - - 0.00000000000000000000001191 106.0
SHD3_k127_934806_4 amine dehydrogenase activity - - - 0.000000000000000000001618 103.0
SHD3_k127_934806_5 - - - - 0.00000000000000003237 89.0
SHD3_k127_934806_6 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K00075 - 1.3.1.98 0.0000000000001284 72.0
SHD3_k127_934806_7 double-stranded DNA 3'-5' exodeoxyribonuclease activity K01176 - 3.2.1.1 0.0000006427 59.0
SHD3_k127_951992_0 TIGRFAM DNA protecting protein DprA K04096 - - 0.00000000000000000000000000000000000000000000000000000006824 208.0
SHD3_k127_951992_1 protein secretion - - - 0.00000001195 56.0
SHD3_k127_953653_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 416.0
SHD3_k127_953653_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 371.0
SHD3_k127_953653_2 Aminotransferase class I and II K00812,K10907 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004521 349.0
SHD3_k127_953653_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001146 283.0
SHD3_k127_953653_4 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0070566,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.000000000000000000000000000000000000000000000003236 177.0
SHD3_k127_953653_5 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000007869 141.0
SHD3_k127_953653_6 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.00000000000000000000000000000000001244 143.0
SHD3_k127_953653_7 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000004394 123.0
SHD3_k127_953653_8 Transcriptional regulator - - - 0.000000000000000000000000005609 117.0
SHD3_k127_953653_9 Regulatory protein, FmdB family - - - 0.000000000000000000000004219 105.0
SHD3_k127_962052_0 Porphobilinogen deaminase, dipyromethane cofactor binding domain K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 296.0
SHD3_k127_962052_1 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.0000000000000000000000000000009195 132.0
SHD3_k127_964627_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 384.0
SHD3_k127_964627_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002343 270.0
SHD3_k127_988678_0 PFAM Copper type II ascorbate-dependent monooxygenase, C-terminal domain - - - 0.000000000000000000004147 101.0
SHD3_k127_988678_1 Tetratricopeptide repeat - - - 0.0002115 47.0
SHD3_k127_99931_0 - K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002822 310.0
SHD3_k127_99931_1 abc transporter atp-binding protein K01990 - - 0.000000000000004191 76.0
SHD3_k127_99931_2 Domain of unknown function (DUF4386) - - - 0.000007015 52.0
SHD3_k127_999815_0 aldehyde-lyase activity K01621 - 4.1.2.22,4.1.2.9 0.0 1260.0
SHD3_k127_999815_1 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000004758 144.0