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Overview

ID MAG03586
Name SRD3_bin.24
Sample SMP0090
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Alphaproteobacteria
Order Sphingomonadales
Family Sphingomonadaceae
Genus Sphingomicrobium
Species
Assembly information
Completeness (%) 93.91
Contamination (%) 1.94
GC content (%) 62.0
N50 (bp) 77,094
Genome size (bp) 2,746,763

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2514

Gene name Description KEGG GOs EC E-value Score Sequence
SRD3_k127_1010492_0 DNA polymerase K02337 - 2.7.7.7 0.0 1583.0
SRD3_k127_1010492_1 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1374.0
SRD3_k127_1010492_10 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.658e-298 920.0
SRD3_k127_1010492_100 Domain of Unknown Function (DUF1259) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 358.0
SRD3_k127_1010492_101 TonB dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000365 370.0
SRD3_k127_1010492_102 DNA polymerase K02341 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004214 355.0
SRD3_k127_1010492_103 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 346.0
SRD3_k127_1010492_104 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 351.0
SRD3_k127_1010492_105 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002751 343.0
SRD3_k127_1010492_106 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 344.0
SRD3_k127_1010492_107 MazG family K04765 - 3.6.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 340.0
SRD3_k127_1010492_108 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 347.0
SRD3_k127_1010492_109 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008504 339.0
SRD3_k127_1010492_11 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 1.99e-296 918.0
SRD3_k127_1010492_110 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 332.0
SRD3_k127_1010492_111 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003301 329.0
SRD3_k127_1010492_112 Sulfotransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004515 341.0
SRD3_k127_1010492_113 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 325.0
SRD3_k127_1010492_114 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 321.0
SRD3_k127_1010492_115 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001803 317.0
SRD3_k127_1010492_116 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 328.0
SRD3_k127_1010492_117 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005945 313.0
SRD3_k127_1010492_118 Sulfotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006906 325.0
SRD3_k127_1010492_119 cyclic nucleotide binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004401 309.0
SRD3_k127_1010492_12 Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 2.532e-295 923.0
SRD3_k127_1010492_120 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 301.0
SRD3_k127_1010492_121 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009107 299.0
SRD3_k127_1010492_122 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007452 289.0
SRD3_k127_1010492_123 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004344 294.0
SRD3_k127_1010492_124 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 289.0
SRD3_k127_1010492_125 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001063 285.0
SRD3_k127_1010492_126 ATPase involved in DNA replication - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005938 278.0
SRD3_k127_1010492_127 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001295 270.0
SRD3_k127_1010492_128 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008908 261.0
SRD3_k127_1010492_129 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000142 258.0
SRD3_k127_1010492_13 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 - 2.7.13.3 1.852e-279 877.0
SRD3_k127_1010492_130 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000000000000000001314 259.0
SRD3_k127_1010492_131 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000372 253.0
SRD3_k127_1010492_132 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000004646 254.0
SRD3_k127_1010492_133 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000004773 248.0
SRD3_k127_1010492_134 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000000000000000000000000000005388 245.0
SRD3_k127_1010492_135 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003614 243.0
SRD3_k127_1010492_136 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000216 245.0
SRD3_k127_1010492_137 gag-polyprotein putative aspartyl protease K06985 - - 0.00000000000000000000000000000000000000000000000000000000000000000001735 237.0
SRD3_k127_1010492_138 Belongs to the CinA family K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000000000004466 236.0
SRD3_k127_1010492_139 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000007153 243.0
SRD3_k127_1010492_14 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 - 1.5.5.1 1.392e-277 861.0
SRD3_k127_1010492_140 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.0000000000000000000000000000000000000000000000000000000000000000003228 234.0
SRD3_k127_1010492_141 COG1073 hydrolases of the alpha beta superfamily K06889 - - 0.000000000000000000000000000000000000000000000000000000000000004506 225.0
SRD3_k127_1010492_142 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000002021 226.0
SRD3_k127_1010492_144 PTS fructose transporter subunit IIA K02793 - 2.7.1.191 0.00000000000000000000000000000000000000000000000000000000000005048 220.0
SRD3_k127_1010492_145 COG0739 Membrane proteins related to metalloendopeptidases K21472 - - 0.000000000000000000000000000000000000000000000000000000000005743 214.0
SRD3_k127_1010492_146 Predicted membrane protein (DUF2127) - - - 0.0000000000000000000000000000000000000000000000000000000000288 213.0
SRD3_k127_1010492_147 Polysaccharide biosynthesis/export protein K01991 - - 0.000000000000000000000000000000000000000000000000000000007807 205.0
SRD3_k127_1010492_148 biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.00000000000000000000000000000000000000000000000000000001503 206.0
SRD3_k127_1010492_149 Serine kinase of the HPr protein, regulates carbohydrate metabolism - - - 0.00000000000000000000000000000000000000000000000000000002721 200.0
SRD3_k127_1010492_15 cytochrome C K02198 - - 9.441e-258 809.0
SRD3_k127_1010492_150 DNA polymerase III K02339 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000002847 199.0
SRD3_k127_1010492_151 PRC-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000002865 202.0
SRD3_k127_1010492_152 2'-5' RNA ligase superfamily - - - 0.00000000000000000000000000000000000000000000000000000003882 200.0
SRD3_k127_1010492_153 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.00000000000000000000000000000000000000000000000000000008726 204.0
SRD3_k127_1010492_154 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000009067 197.0
SRD3_k127_1010492_155 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. - - - 0.0000000000000000000000000000000000000000000000000000001024 200.0
SRD3_k127_1010492_156 Alkyl hydroperoxide reductase K02199 - - 0.000000000000000000000000000000000000000000000000000003317 195.0
SRD3_k127_1010492_157 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000000005904 196.0
SRD3_k127_1010492_158 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.00000000000000000000000000000000000000000000000000001048 197.0
SRD3_k127_1010492_159 Protein of unknown function (DUF3775) - - - 0.00000000000000000000000000000000000000000000000000001236 194.0
SRD3_k127_1010492_16 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 7.683e-254 790.0
SRD3_k127_1010492_160 Peptidase M56 - - - 0.00000000000000000000000000000000000000000000000000001705 199.0
SRD3_k127_1010492_161 Ferredoxin - - - 0.000000000000000000000000000000000000000000000000001187 186.0
SRD3_k127_1010492_162 - - - - 0.000000000000000000000000000000000000000000000000001482 186.0
SRD3_k127_1010492_164 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000000000000000000000000000000000000007837 194.0
SRD3_k127_1010492_165 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000002533 186.0
SRD3_k127_1010492_166 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000004783 182.0
SRD3_k127_1010492_167 Penicillinase repressor - - - 0.0000000000000000000000000000000000000000000000008197 177.0
SRD3_k127_1010492_168 Polyphosphate kinase 2 (PPK2) - - - 0.00000000000000000000000000000000000000000000277 173.0
SRD3_k127_1010492_169 Histidine triad (HIT) protein - - - 0.000000000000000000000000000000000000000000003122 169.0
SRD3_k127_1010492_17 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 8.803e-254 790.0
SRD3_k127_1010492_170 subunit of a heme lyase K02200 - - 0.00000000000000000000000000000000000000000001188 168.0
SRD3_k127_1010492_171 - - - - 0.00000000000000000000000000000000000000000001507 167.0
SRD3_k127_1010492_172 Oligoketide cyclase lipid transport protein K18588 - - 0.0000000000000000000000000000000000000000004046 164.0
SRD3_k127_1010492_173 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000000005871 164.0
SRD3_k127_1010492_174 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000001387 159.0
SRD3_k127_1010492_175 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate - - - 0.000000000000000000000000000000000000000001905 162.0
SRD3_k127_1010492_176 Outer membrane protein (OmpH-like) - - - 0.00000000000000000000000000000000000000001857 160.0
SRD3_k127_1010492_177 Prolyl 4-hydroxylase alpha subunit homologues. K00472 - 1.14.11.2 0.00000000000000000000000000000000000000002349 159.0
SRD3_k127_1010492_178 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.0000000000000000000000000000000000000001126 157.0
SRD3_k127_1010492_179 Cytochrome c biogenesis factor K02200 - - 0.0000000000000000000000000000000000000003297 158.0
SRD3_k127_1010492_18 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 9.587e-246 762.0
SRD3_k127_1010492_180 Ferredoxin K04755 - - 0.0000000000000000000000000000000000000003903 152.0
SRD3_k127_1010492_181 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.0000000000000000000000000000000000000005602 154.0
SRD3_k127_1010492_182 Metal-sensitive transcriptional repressor - - - 0.000000000000000000000000000000000000001399 149.0
SRD3_k127_1010492_183 Type IV pilus biogenesis stability protein PilW - - - 0.000000000000000000000000000000000000002228 152.0
SRD3_k127_1010492_184 MAPEG family - - - 0.000000000000000000000000000000000000002412 151.0
SRD3_k127_1010492_185 PAS domain - - - 0.000000000000000000000000000000000000004139 155.0
SRD3_k127_1010492_186 EF hand - - - 0.000000000000000000000000000000000000005923 154.0
SRD3_k127_1010492_187 protein conserved in bacteria K09928 - - 0.000000000000000000000000000000000000006686 152.0
SRD3_k127_1010492_188 EF hand - - - 0.000000000000000000000000000000000000006917 156.0
SRD3_k127_1010492_189 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000000005115 149.0
SRD3_k127_1010492_19 Belongs to the citrate synthase family K01647 - 2.3.3.1 6.986e-245 760.0
SRD3_k127_1010492_190 50S ribosomal protein L31 K02909 - - 0.000000000000000000000000000000000005314 139.0
SRD3_k127_1010492_191 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000000000001723 138.0
SRD3_k127_1010492_192 Membrane protein implicated in regulation of membrane protease activity K07340 - - 0.0000000000000000000000000000000001222 139.0
SRD3_k127_1010492_193 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000001802 128.0
SRD3_k127_1010492_194 Phospholipid methyltransferase - - - 0.00000000000000000000000000001183 125.0
SRD3_k127_1010492_195 COG1925 Phosphotransferase system, HPr-related proteins K11189 - - 0.00000000000000000000000000001933 124.0
SRD3_k127_1010492_196 Protein of unknown function (DUF1467) - - - 0.0000000000000000000000000001641 119.0
SRD3_k127_1010492_197 Preprotein translocase subunit SecG K03075 - - 0.000000000000000000000000005969 114.0
SRD3_k127_1010492_198 - - - - 0.0000000000000000000000001064 112.0
SRD3_k127_1010492_2 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1337.0
SRD3_k127_1010492_20 metallo-beta-lactamase K12574 - - 2.374e-244 765.0
SRD3_k127_1010492_200 - - - - 0.000000000000000000000001071 115.0
SRD3_k127_1010492_201 Domain of unknown function (DUF1905) - - - 0.000000000000000000000153 100.0
SRD3_k127_1010492_202 - - - - 0.00000000000000000004786 96.0
SRD3_k127_1010492_204 Domain of unknown function (DUF1905) - - - 0.00000000000000000868 86.0
SRD3_k127_1010492_205 - - - - 0.0000000000001741 79.0
SRD3_k127_1010492_206 Peptidase inhibitor I78 family - - - 0.000000000000281 73.0
SRD3_k127_1010492_21 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666,K20034 - 6.2.1.44 2.509e-244 771.0
SRD3_k127_1010492_210 - - - - 0.00000002344 64.0
SRD3_k127_1010492_215 PEP-CTERM motif - - - 0.00003033 53.0
SRD3_k127_1010492_22 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 1.825e-241 754.0
SRD3_k127_1010492_23 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 - 6.1.1.15 3.319e-241 751.0
SRD3_k127_1010492_24 NADH ubiquinone oxidoreductase subunit K00342 - 1.6.5.3 1.205e-238 756.0
SRD3_k127_1010492_25 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 - - 5.998e-237 738.0
SRD3_k127_1010492_26 Belongs to the isocitrate and isopropylmalate dehydrogenases family K00031 - 1.1.1.42 1.833e-236 736.0
SRD3_k127_1010492_27 Protein conserved in bacteria - - - 2.085e-230 727.0
SRD3_k127_1010492_28 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 1.089e-224 710.0
SRD3_k127_1010492_29 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 2.356e-224 700.0
SRD3_k127_1010492_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1172.0
SRD3_k127_1010492_30 acyl-CoA dehydrogenase K00252 - 1.3.8.6 1.042e-219 689.0
SRD3_k127_1010492_31 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 3.455e-219 689.0
SRD3_k127_1010492_32 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) K08309 - - 1.265e-211 683.0
SRD3_k127_1010492_33 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 3.298e-210 668.0
SRD3_k127_1010492_34 Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides K03684 - 3.1.13.5 1.621e-208 653.0
SRD3_k127_1010492_35 Belongs to the Orn Lys Arg decarboxylase class-II family K01581 - 4.1.1.17 1.714e-205 647.0
SRD3_k127_1010492_36 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 6.135e-204 645.0
SRD3_k127_1010492_37 Histidine kinase K14980 - 2.7.13.3 6.15e-202 644.0
SRD3_k127_1010492_38 Peptidase, M28 - - - 7.706e-199 630.0
SRD3_k127_1010492_39 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 6.855e-198 622.0
SRD3_k127_1010492_4 NADH-quinone oxidoreductase K00336 - 1.6.5.3 0.0 1091.0
SRD3_k127_1010492_40 Belongs to the deoxyhypusine synthase family K00809 - 2.5.1.46 1.122e-197 621.0
SRD3_k127_1010492_41 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 622.0
SRD3_k127_1010492_42 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004672 628.0
SRD3_k127_1010492_43 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 594.0
SRD3_k127_1010492_44 ABC-type transport system, involved in lipoprotein release, permease component K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 586.0
SRD3_k127_1010492_45 Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 585.0
SRD3_k127_1010492_46 DNA repair photolyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005662 574.0
SRD3_k127_1010492_47 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 575.0
SRD3_k127_1010492_48 DNA recombination protein K09760 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006962 562.0
SRD3_k127_1010492_49 peptidylprolyl isomerase K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003054 558.0
SRD3_k127_1010492_5 NADH ubiquinone oxidoreductase subunit K00341 - 1.6.5.3 0.0 1062.0
SRD3_k127_1010492_50 Belongs to the peptidase S11 family K07258 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 550.0
SRD3_k127_1010492_51 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 550.0
SRD3_k127_1010492_52 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 538.0
SRD3_k127_1010492_53 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005489 534.0
SRD3_k127_1010492_54 receptor K16092 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005613 550.0
SRD3_k127_1010492_55 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 538.0
SRD3_k127_1010492_56 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007071 533.0
SRD3_k127_1010492_57 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 516.0
SRD3_k127_1010492_58 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006022 504.0
SRD3_k127_1010492_59 Belongs to the Glu Leu Phe Val dehydrogenases family K00263 - 1.4.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005204 497.0
SRD3_k127_1010492_6 ABC transporter - - - 0.0 1026.0
SRD3_k127_1010492_60 FAD binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 490.0
SRD3_k127_1010492_61 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005993 480.0
SRD3_k127_1010492_62 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 494.0
SRD3_k127_1010492_63 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 481.0
SRD3_k127_1010492_64 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 476.0
SRD3_k127_1010492_65 overlaps another CDS with the same product name K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000828 471.0
SRD3_k127_1010492_66 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004785 456.0
SRD3_k127_1010492_67 cation diffusion facilitator family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006636 459.0
SRD3_k127_1010492_68 cystathionine beta-lyase K01760 - 4.4.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 462.0
SRD3_k127_1010492_69 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001133 458.0
SRD3_k127_1010492_7 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 6.771e-318 988.0
SRD3_k127_1010492_70 Inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007818 436.0
SRD3_k127_1010492_71 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008492 446.0
SRD3_k127_1010492_72 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004683 451.0
SRD3_k127_1010492_73 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009862 430.0
SRD3_k127_1010492_74 Alpha Beta K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 419.0
SRD3_k127_1010492_75 Major Facilitator K03762 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006627 419.0
SRD3_k127_1010492_76 BlaR1 peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009383 428.0
SRD3_k127_1010492_77 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004204 409.0
SRD3_k127_1010492_78 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005904 408.0
SRD3_k127_1010492_79 Lytic murein transglycosylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002756 407.0
SRD3_k127_1010492_8 Histidine kinase K13587 - 2.7.13.3 8.373e-311 970.0
SRD3_k127_1010492_80 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 408.0
SRD3_k127_1010492_81 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001197 418.0
SRD3_k127_1010492_82 overlaps another CDS with the same product name K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 406.0
SRD3_k127_1010492_83 Belongs to the Orn Lys Arg decarboxylase class-II family K01586 - 4.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004366 407.0
SRD3_k127_1010492_84 LuxR family transcriptional regulator K03424 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008085 395.0
SRD3_k127_1010492_85 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009245 394.0
SRD3_k127_1010492_86 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 390.0
SRD3_k127_1010492_87 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 383.0
SRD3_k127_1010492_88 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302 385.0
SRD3_k127_1010492_89 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009853 383.0
SRD3_k127_1010492_9 Transport of potassium into the cell K03549 - - 7.513e-303 940.0
SRD3_k127_1010492_90 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003284 381.0
SRD3_k127_1010492_91 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 372.0
SRD3_k127_1010492_92 Threonine dehydratase K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003009 373.0
SRD3_k127_1010492_93 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001449 371.0
SRD3_k127_1010492_94 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005984 377.0
SRD3_k127_1010492_95 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001572 371.0
SRD3_k127_1010492_96 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008148 362.0
SRD3_k127_1010492_97 Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003905 358.0
SRD3_k127_1010492_98 NADH dehydrogenase K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006795 361.0
SRD3_k127_1010492_99 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K14981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 359.0
SRD3_k127_1034728_0 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 9.167e-315 989.0
SRD3_k127_1034728_1 Glycosyl hydrolases family 2, sugar binding domain - - - 4.303e-245 770.0
SRD3_k127_1034728_10 Belongs to the UPF0145 family - - - 0.00000000000000000000000000000000000000000002506 164.0
SRD3_k127_1034728_11 - - - - 0.000000003794 65.0
SRD3_k127_1034728_2 Acetylornithine deacetylase Succinyl-diaminopimelate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000356 596.0
SRD3_k127_1034728_3 AFG1 family ATPase K06916 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001597 533.0
SRD3_k127_1034728_4 In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006252 449.0
SRD3_k127_1034728_5 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009658 454.0
SRD3_k127_1034728_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001291 367.0
SRD3_k127_1034728_7 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000008587 245.0
SRD3_k127_1034728_8 protein, possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000000000000000000000000000001631 222.0
SRD3_k127_1034728_9 Alkyl hydroperoxide reductase K03564 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000001978 199.0
SRD3_k127_1037711_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0 1217.0
SRD3_k127_1037711_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1157.0
SRD3_k127_1037711_10 Histidine kinase - - - 3.246e-197 625.0
SRD3_k127_1037711_11 amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000296 573.0
SRD3_k127_1037711_12 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 503.0
SRD3_k127_1037711_13 alcohol dehydrogenase K07119 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003036 473.0
SRD3_k127_1037711_14 sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 462.0
SRD3_k127_1037711_15 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006979 429.0
SRD3_k127_1037711_16 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00019 - 1.1.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004425 394.0
SRD3_k127_1037711_17 2OG-Fe(II) oxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 389.0
SRD3_k127_1037711_18 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001649 376.0
SRD3_k127_1037711_19 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009097 357.0
SRD3_k127_1037711_2 ATP-dependent helicase K03579 - 3.6.4.13 0.0 1109.0
SRD3_k127_1037711_20 Chain length determinant protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003434 323.0
SRD3_k127_1037711_21 Glycosyl Transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001032 323.0
SRD3_k127_1037711_22 thymidine kinase K00857 - 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005761 313.0
SRD3_k127_1037711_23 metalloprotease K07054 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 317.0
SRD3_k127_1037711_24 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008841 323.0
SRD3_k127_1037711_25 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 297.0
SRD3_k127_1037711_26 Nucleic-acid-binding protein K07742 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002678 260.0
SRD3_k127_1037711_27 PIN domain - - - 0.00000000000000000000000000000000000000000000000000000000000000002004 225.0
SRD3_k127_1037711_28 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001497 225.0
SRD3_k127_1037711_29 Cell Wall - - - 0.000000000000000000000000000000000000000000000000000000000000000394 234.0
SRD3_k127_1037711_3 peptidase M13 - - - 5e-324 1004.0
SRD3_k127_1037711_30 Tetratricopeptide repeats - - - 0.00000000000000000000000000000000000000000000000000000000000002826 233.0
SRD3_k127_1037711_31 Polysaccharide biosynthesis/export protein K01991 - - 0.0000000000000000000000000000000000000000000000000000000000006793 217.0
SRD3_k127_1037711_32 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.000000000000000000000000000000000000000000000000000000005326 203.0
SRD3_k127_1037711_33 Domain of unknown function (DUF4893) - - - 0.0000000000000000000000000000000000000000000000000000006602 208.0
SRD3_k127_1037711_34 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.0000000000000000000000000000000000000000000000000000006997 206.0
SRD3_k127_1037711_35 RelE toxin of RelE / RelB toxin-antitoxin system - - - 0.0000000000000000000000000000000000000000000000000007918 184.0
SRD3_k127_1037711_36 Toxic component of a toxin-antitoxin (TA) module. An RNase K07062 - - 0.00000000000000000000000000000000000000000000002641 173.0
SRD3_k127_1037711_37 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000000000000000000000000000000003433 166.0
SRD3_k127_1037711_38 transcriptional regulator K07726 - - 0.00000000000000000000000000000000000000000008101 161.0
SRD3_k127_1037711_39 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000000001258 147.0
SRD3_k127_1037711_4 of ABC transporters with duplicated ATPase K15738 - - 8.781e-292 905.0
SRD3_k127_1037711_40 HicB family - - - 0.00000000000000000000000000000000000009171 145.0
SRD3_k127_1037711_41 bleomycin resistance protein - - - 0.000000000000000000000000000000000006675 139.0
SRD3_k127_1037711_42 Nickel/cobalt transporter regulator - - - 0.000000000000000000000000000000003377 138.0
SRD3_k127_1037711_43 ETC complex I subunit - - - 0.0000000000000000000000000000002798 128.0
SRD3_k127_1037711_44 - - - - 0.00000000000000000000001102 104.0
SRD3_k127_1037711_46 - - - - 0.0000000000000000002574 101.0
SRD3_k127_1037711_47 - - - - 0.0000000000000001236 86.0
SRD3_k127_1037711_48 helix_turn_helix, Lux Regulon - - - 0.0000000001017 64.0
SRD3_k127_1037711_5 Participates in both transcription termination and antitermination K02600 - - 2.497e-277 860.0
SRD3_k127_1037711_50 - - - - 0.000007326 57.0
SRD3_k127_1037711_6 peptidase M13 - - - 6.248e-275 860.0
SRD3_k127_1037711_7 Prolyl oligopeptidase family - - - 1.062e-248 783.0
SRD3_k127_1037711_8 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 3.761e-224 714.0
SRD3_k127_1037711_9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 - - 7.12e-216 687.0
SRD3_k127_106260_0 TonB-dependent Receptor Plug Domain K02014 - - 1.522e-284 902.0
SRD3_k127_106260_1 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 1.379e-262 831.0
SRD3_k127_106260_10 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002062 394.0
SRD3_k127_106260_11 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001556 400.0
SRD3_k127_106260_12 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007116 384.0
SRD3_k127_106260_13 enzyme involved in biosynthesis of extracellular polysaccharides - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009981 352.0
SRD3_k127_106260_14 epoxide hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 323.0
SRD3_k127_106260_15 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006767 298.0
SRD3_k127_106260_16 COG0110 Acetyltransferase (isoleucine patch superfamily) K13018 - 2.3.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008079 283.0
SRD3_k127_106260_17 peptidase K01415,K07386 - 3.4.24.71 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002013 290.0
SRD3_k127_106260_18 Belongs to the MIP aquaporin (TC 1.A.8) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007225 271.0
SRD3_k127_106260_19 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001046 258.0
SRD3_k127_106260_2 FAD linked oxidase domain protein - - - 7.9e-220 699.0
SRD3_k127_106260_20 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003209 270.0
SRD3_k127_106260_21 EpsG family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000059 262.0
SRD3_k127_106260_22 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000173 250.0
SRD3_k127_106260_23 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000003205 251.0
SRD3_k127_106260_24 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935,K02169 - 2.1.1.197,6.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000007304 240.0
SRD3_k127_106260_25 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000006294 224.0
SRD3_k127_106260_26 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000001034 228.0
SRD3_k127_106260_27 Belongs to the DegT DnrJ EryC1 family K13017 - 2.6.1.98 0.0000000000000000000000000000000000000000000000000000000000004563 217.0
SRD3_k127_106260_28 Periplasmic component of the Tol biopolymer transport system - - - 0.00000000000000000000000000000000000000000000000000000000503 210.0
SRD3_k127_106260_29 - - - - 0.0000000000000000000000000000000000000000000000000000005657 202.0
SRD3_k127_106260_3 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 3.138e-195 617.0
SRD3_k127_106260_30 Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ K06137 GO:0005575,GO:0005576 1.3.3.11 0.0000000000000000000000000000000000000000000000000004301 193.0
SRD3_k127_106260_31 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000003362 193.0
SRD3_k127_106260_32 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000004449 188.0
SRD3_k127_106260_33 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000000000000000000000002372 171.0
SRD3_k127_106260_34 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000002568 170.0
SRD3_k127_106260_35 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000004397 166.0
SRD3_k127_106260_36 Pas domain - - - 0.000000000000000000000000000000000000000000866 163.0
SRD3_k127_106260_37 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000000000000004253 157.0
SRD3_k127_106260_38 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000000000003891 151.0
SRD3_k127_106260_39 PFAM regulatory protein TetR K16137 - - 0.0000000000000000000000000000000000002379 147.0
SRD3_k127_106260_4 Dehydrogenase K00117 - 1.1.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003256 550.0
SRD3_k127_106260_41 Alpha beta hydrolase - - - 0.000000000000000000000000000000000009418 140.0
SRD3_k127_106260_42 - - - - 0.0000000000000000000000000000000000221 143.0
SRD3_k127_106260_43 Transcriptional regulator PadR-like family - - - 0.00000000000000000000000000000000002615 143.0
SRD3_k127_106260_44 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.00000000000000000000000000000000009234 140.0
SRD3_k127_106260_45 enzyme involved in biosynthesis of extracellular polysaccharides - - - 0.000000000000000000000000000000002358 132.0
SRD3_k127_106260_46 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000702 109.0
SRD3_k127_106260_47 Transcriptional regulator - - - 0.000000000000000000003323 100.0
SRD3_k127_106260_48 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000006586 102.0
SRD3_k127_106260_49 Conserved protein containing a Zn-ribbon-like motif - - - 0.000000000000000003097 91.0
SRD3_k127_106260_5 Chitin synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 537.0
SRD3_k127_106260_50 PDZ DHR GLGF domain protein - - - 0.00000000000000028 92.0
SRD3_k127_106260_51 sequence-specific DNA binding - - - 0.00000000000008852 78.0
SRD3_k127_106260_52 - - - - 0.00000000001109 71.0
SRD3_k127_106260_53 Penicillinase repressor - - - 0.000000001139 68.0
SRD3_k127_106260_54 Penicillinase repressor - - - 0.00062 50.0
SRD3_k127_106260_6 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 477.0
SRD3_k127_106260_7 8-amino-7-oxononanoate synthase K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004708 452.0
SRD3_k127_106260_8 NADH:flavin oxidoreductase / NADH oxidase family K10680 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009415 437.0
SRD3_k127_106260_9 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 421.0
SRD3_k127_1093027_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1144.0
SRD3_k127_1093027_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.0 1042.0
SRD3_k127_1093027_10 IrrE N-terminal-like domain K07110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003529 486.0
SRD3_k127_1093027_11 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002329 422.0
SRD3_k127_1093027_12 Chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 403.0
SRD3_k127_1093027_13 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 391.0
SRD3_k127_1093027_14 cell division K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004032 371.0
SRD3_k127_1093027_15 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 331.0
SRD3_k127_1093027_16 Belongs to the ParB family K03497 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007219 330.0
SRD3_k127_1093027_17 COG3121 P pilus assembly protein, chaperone PapD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005863 320.0
SRD3_k127_1093027_18 membrane protein, TerC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001669 264.0
SRD3_k127_1093027_19 Acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000001168 260.0
SRD3_k127_1093027_2 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 7.59e-279 873.0
SRD3_k127_1093027_20 DNA polymerase III K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000002748 258.0
SRD3_k127_1093027_21 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000000000000000000000000000000000000000000000003147 243.0
SRD3_k127_1093027_22 Belongs to the UPF0260 family K09160 - - 0.00000000000000000000000000000000000000000000000000000000000000000004225 233.0
SRD3_k127_1093027_23 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase - - - 0.000000000000000000000000000000000000000000000000000000000000001664 223.0
SRD3_k127_1093027_24 membrane K08973 - - 0.000000000000000000000000000000000000000000000000000000000000006292 220.0
SRD3_k127_1093027_25 DNA repair protein MmcB-like - - - 0.00000000000000000000000000000000000000000000000000000000000007189 216.0
SRD3_k127_1093027_26 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000001846 218.0
SRD3_k127_1093027_27 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000001579 215.0
SRD3_k127_1093027_28 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.00000000000000000000000000000000000000000000000000000000009315 205.0
SRD3_k127_1093027_29 COG3773 Cell wall hydrolyses involved in spore germination - - - 0.000000000000000000000000000000000000000000000000000000001265 207.0
SRD3_k127_1093027_3 usher protein - - - 6.559e-273 866.0
SRD3_k127_1093027_30 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.00000000000000000000000000000000000000000000000000000001312 202.0
SRD3_k127_1093027_31 Metal-dependent hydrolase K07043 - - 0.000000000000000000000000000000000000000000000000000004092 199.0
SRD3_k127_1093027_32 Lipopolysaccharide-assembly K03643 - - 0.00000000000000000000000000000000000000000000000000001526 194.0
SRD3_k127_1093027_33 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000000000000000000000000000002147 193.0
SRD3_k127_1093027_34 Cell division protein K09811 - - 0.000000000000000000000000000000000000000000000005866 184.0
SRD3_k127_1093027_35 Domain of unknown function (DUF4402) - - - 0.0000000000000000000000000000000000000000002358 164.0
SRD3_k127_1093027_36 zinc-ribbon domain - - - 0.000000000000000000000000000000000000000004764 169.0
SRD3_k127_1093027_37 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000007463 171.0
SRD3_k127_1093027_38 Ankyrin repeat - - - 0.0000000000000000000000000000000000003716 152.0
SRD3_k127_1093027_39 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000008696 134.0
SRD3_k127_1093027_4 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 7.855e-248 769.0
SRD3_k127_1093027_40 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000000000000002235 135.0
SRD3_k127_1093027_42 Protein of unknown function (DUF1491) - - - 0.00000000000000000000004964 102.0
SRD3_k127_1093027_43 Domain of unknown function (DUF4402) - - - 0.000000000000000000001839 101.0
SRD3_k127_1093027_44 Domain of unknown function (DUF4402) - - - 0.000000000000001834 83.0
SRD3_k127_1093027_45 carbohydrate metabolic process K21014 - 2.8.2.37 0.000006181 57.0
SRD3_k127_1093027_5 Isocitrate lyase K01637 - 4.1.3.1 3.042e-227 710.0
SRD3_k127_1093027_6 Malate synthase K01637,K01638 GO:0003674,GO:0003824,GO:0004451,GO:0004474,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009987,GO:0010259,GO:0016740,GO:0016746,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0032501,GO:0032502,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046487,GO:0046912,GO:0048856,GO:0071704 2.3.3.9,4.1.3.1 1.175e-211 671.0
SRD3_k127_1093027_7 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003535 574.0
SRD3_k127_1093027_8 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 533.0
SRD3_k127_1093027_9 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008775 491.0
SRD3_k127_1196780_0 Peptidase, M16 - - - 0.0 1080.0
SRD3_k127_1196780_1 TonB dependent receptor - - - 2.142e-286 907.0
SRD3_k127_1196780_10 Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009483 354.0
SRD3_k127_1196780_11 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002094 339.0
SRD3_k127_1196780_13 PFAM IS1 transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004576 268.0
SRD3_k127_1196780_14 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001881 269.0
SRD3_k127_1196780_15 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000003989 243.0
SRD3_k127_1196780_16 P63C domain - - - 0.000000000000000000000000000000000000000000000000000000000000001948 224.0
SRD3_k127_1196780_17 ATPases associated with a variety of cellular activities K06148 - - 0.0000000000000000000000000000000000000000000000000000000000003453 233.0
SRD3_k127_1196780_18 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000005424 203.0
SRD3_k127_1196780_19 - - - - 0.00000000000000000000000000000002436 128.0
SRD3_k127_1196780_2 Carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 571.0
SRD3_k127_1196780_21 - - - - 0.0000000000000000000004531 98.0
SRD3_k127_1196780_23 - - - - 0.0000000000000006732 85.0
SRD3_k127_1196780_24 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000000001781 79.0
SRD3_k127_1196780_25 - - - - 0.000000000973 67.0
SRD3_k127_1196780_3 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002596 559.0
SRD3_k127_1196780_4 protein conserved in bacteria K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 482.0
SRD3_k127_1196780_5 Belongs to the NAD(P)-dependent epimerase dehydratase family K01784 - 5.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006534 457.0
SRD3_k127_1196780_6 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008881 447.0
SRD3_k127_1196780_7 A domain family that is part of the cupin metalloenzyme superfamily. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 415.0
SRD3_k127_1196780_8 Conserved hypothetical protein 698 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 415.0
SRD3_k127_1196780_9 peptidyl-prolyl cis-trans isomerase K01802 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 358.0
SRD3_k127_1313517_0 E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate K00164 - 1.2.4.2 0.0 1500.0
SRD3_k127_1313517_1 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 - 2.1.1.13 0.0 1331.0
SRD3_k127_1313517_10 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 2.548e-209 658.0
SRD3_k127_1313517_100 - - - - 0.0000000003042 64.0
SRD3_k127_1313517_101 FAD linked oxidase domain protein - - - 0.00000001217 62.0
SRD3_k127_1313517_102 - - - - 0.00000003108 58.0
SRD3_k127_1313517_103 - - - - 0.00000003455 59.0
SRD3_k127_1313517_104 - - - - 0.000000109 61.0
SRD3_k127_1313517_105 Protein tyrosine kinase K12132 - 2.7.11.1 0.000000258 63.0
SRD3_k127_1313517_106 Putative auto-transporter adhesin, head GIN domain - - - 0.000002371 57.0
SRD3_k127_1313517_107 PEP-CTERM motif - - - 0.00003142 55.0
SRD3_k127_1313517_11 signal peptide peptidase K04773 - - 1.109e-206 660.0
SRD3_k127_1313517_110 Winged helix DNA-binding domain - - - 0.0006003 48.0
SRD3_k127_1313517_111 Recombinase - - - 0.0009181 45.0
SRD3_k127_1313517_12 Acyl-CoA dehydrogenase, middle domain - - - 3.821e-198 623.0
SRD3_k127_1313517_13 Metal-dependent hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004054 612.0
SRD3_k127_1313517_14 FAD linked - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002685 588.0
SRD3_k127_1313517_15 Threonine dehydratase K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008736 576.0
SRD3_k127_1313517_16 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005909 571.0
SRD3_k127_1313517_17 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 571.0
SRD3_k127_1313517_18 Belongs to the glycosyl hydrolase 43 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008214 570.0
SRD3_k127_1313517_19 Flavin-binding monooxygenase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 566.0
SRD3_k127_1313517_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1249.0
SRD3_k127_1313517_20 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005848 539.0
SRD3_k127_1313517_21 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002873 527.0
SRD3_k127_1313517_22 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 511.0
SRD3_k127_1313517_23 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006334 528.0
SRD3_k127_1313517_24 Na -driven multidrug efflux pump K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 496.0
SRD3_k127_1313517_25 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001972 464.0
SRD3_k127_1313517_26 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K13584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 458.0
SRD3_k127_1313517_27 Amino-transferase class IV K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 455.0
SRD3_k127_1313517_28 TIR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 470.0
SRD3_k127_1313517_29 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007913 451.0
SRD3_k127_1313517_3 Belongs to the enoyl-CoA hydratase isomerase family K07516 - 1.1.1.35 0.0 1053.0
SRD3_k127_1313517_30 Peptidase family S41 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 441.0
SRD3_k127_1313517_31 Methionine synthase I (cobalamin-dependent), methyltransferase domain K00548 - 2.1.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 442.0
SRD3_k127_1313517_32 HWE histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008858 439.0
SRD3_k127_1313517_33 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009787 434.0
SRD3_k127_1313517_34 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 410.0
SRD3_k127_1313517_35 ArsR family transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002284 400.0
SRD3_k127_1313517_36 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 394.0
SRD3_k127_1313517_37 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007954 376.0
SRD3_k127_1313517_38 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 377.0
SRD3_k127_1313517_39 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 372.0
SRD3_k127_1313517_4 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 2.682e-308 949.0
SRD3_k127_1313517_40 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003534 371.0
SRD3_k127_1313517_41 Glutathione S-transferase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 364.0
SRD3_k127_1313517_42 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004544 346.0
SRD3_k127_1313517_43 Saccharopine dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009937 355.0
SRD3_k127_1313517_44 Forms part of the polypeptide exit tunnel K02926 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 346.0
SRD3_k127_1313517_45 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000391 340.0
SRD3_k127_1313517_46 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008917 327.0
SRD3_k127_1313517_47 Pseudouridine synthase K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 319.0
SRD3_k127_1313517_48 cation diffusion facilitator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008546 323.0
SRD3_k127_1313517_49 Branched-chain amino acid aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006557 313.0
SRD3_k127_1313517_5 GTP-binding protein TypA K06207 - - 2.361e-263 824.0
SRD3_k127_1313517_50 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000274 306.0
SRD3_k127_1313517_51 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003451 280.0
SRD3_k127_1313517_52 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001698 268.0
SRD3_k127_1313517_53 Protein of unknown function (DUF3365) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000903 267.0
SRD3_k127_1313517_54 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001365 264.0
SRD3_k127_1313517_55 Binds to the 23S rRNA K02876 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001148 263.0
SRD3_k127_1313517_56 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001558 250.0
SRD3_k127_1313517_57 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003814 247.0
SRD3_k127_1313517_58 GAF domain-containing protein K08968 - 1.8.4.14 0.0000000000000000000000000000000000000000000000000000000000000000000001029 248.0
SRD3_k127_1313517_59 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000000028 235.0
SRD3_k127_1313517_6 Thiol disulfide interchange protein - - - 3.782e-246 779.0
SRD3_k127_1313517_60 Domain of unknown function (DUF4337) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001007 235.0
SRD3_k127_1313517_61 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000001236 216.0
SRD3_k127_1313517_62 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000000000000000000000000000000213 213.0
SRD3_k127_1313517_63 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000000000000000000000000000000000000000000000000000000002777 221.0
SRD3_k127_1313517_64 Involved in the binding of tRNA to the ribosomes K02946 - - 0.0000000000000000000000000000000000000000000000000000000004888 203.0
SRD3_k127_1313517_65 Universal stress protein - - - 0.000000000000000000000000000000000000000000000000000000158 198.0
SRD3_k127_1313517_66 EVE domain - - - 0.0000000000000000000000000000000000000000000000000002793 187.0
SRD3_k127_1313517_67 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000000000000000001462 184.0
SRD3_k127_1313517_68 - - - - 0.000000000000000000000000000000000000000000000000003345 190.0
SRD3_k127_1313517_69 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.000000000000000000000000000000000000000000000000005065 181.0
SRD3_k127_1313517_7 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 8.316e-243 756.0
SRD3_k127_1313517_70 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000000000002397 180.0
SRD3_k127_1313517_71 LytTr DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000754 191.0
SRD3_k127_1313517_72 Phosphatidylethanolamine-binding protein K06910 - - 0.0000000000000000000000000000000000000000000000002689 182.0
SRD3_k127_1313517_73 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.000000000000000000000000000000000000000000000001736 173.0
SRD3_k127_1313517_74 Protein of unknown function (DUF1003) - - - 0.00000000000000000000000000000000000000000000009239 175.0
SRD3_k127_1313517_75 glyoxalase III activity - - - 0.0000000000000000000000000000000000000000000006868 173.0
SRD3_k127_1313517_76 chain release factor K15034 - - 0.000000000000000000000000000000000000000000004935 167.0
SRD3_k127_1313517_77 integral membrane protein - - - 0.00000000000000000000000000000000000000000001187 167.0
SRD3_k127_1313517_78 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000000000003139 165.0
SRD3_k127_1313517_79 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000000000000000000001306 158.0
SRD3_k127_1313517_8 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes K00382 - 1.8.1.4 5.107e-239 745.0
SRD3_k127_1313517_80 acyl-CoA thioester hydrolase K10806 - - 0.0000000000000000000000000000000000000000298 155.0
SRD3_k127_1313517_81 - - - - 0.00000000000000000000000000000000000000006102 164.0
SRD3_k127_1313517_82 COG3773 Cell wall hydrolyses involved in spore germination K01449 - 3.5.1.28 0.0000000000000000000000000000000000000004017 158.0
SRD3_k127_1313517_83 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000001214 155.0
SRD3_k127_1313517_85 Antibiotic biosynthesis monooxygenase - - - 0.00000000000000000000000000000000000006528 144.0
SRD3_k127_1313517_86 Protein of unknown function (DUF3140) - - - 0.000000000000000000000000000000000006077 140.0
SRD3_k127_1313517_87 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000000000000001072 134.0
SRD3_k127_1313517_88 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.0000000000000000000000000000000009791 136.0
SRD3_k127_1313517_89 TIR domain - - - 0.000000000000000000000000000000005143 147.0
SRD3_k127_1313517_9 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 1.127e-233 726.0
SRD3_k127_1313517_90 Domain of unknown function (DUF202) K00389 - - 0.000000000000000000000000000001095 126.0
SRD3_k127_1313517_91 Cytochrome c - - - 0.000000000000000000000000000008787 126.0
SRD3_k127_1313517_92 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000000000002563 98.0
SRD3_k127_1313517_93 - K09924 - - 0.000000000000000000001623 102.0
SRD3_k127_1313517_94 Plasmid stabilization - - - 0.0000000000000000000137 93.0
SRD3_k127_1313517_95 Ribosomal protein L30 K02907 - - 0.00000000000000000001557 97.0
SRD3_k127_1313517_96 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.000000000000001203 78.0
SRD3_k127_1313517_97 - - - - 0.00000000002138 66.0
SRD3_k127_1313517_98 Haem-degrading - - - 0.00000000005157 68.0
SRD3_k127_1313517_99 TIR domain - - - 0.00000000005285 74.0
SRD3_k127_1450325_0 PFAM Integrase catalytic region K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002421 404.0
SRD3_k127_1450325_1 Transposase K07483 - - 0.000000000000000000000000000000000000000000000000005464 183.0
SRD3_k127_1450325_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 2.8.1.8 0.0000000000000006228 79.0
SRD3_k127_167847_0 protein conserved in bacteria K09800 - - 0.0 1337.0
SRD3_k127_167847_1 COG0729 Outer membrane protein K07278 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003559 622.0
SRD3_k127_167847_2 Repeat of Unknown Function (DUF347) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 410.0
SRD3_k127_167847_3 TIR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005126 410.0
SRD3_k127_167847_4 Repeat of Unknown Function (DUF347) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002926 302.0
SRD3_k127_167847_5 Histidine kinase - - - 0.0000000000000000000000000000000000000001855 154.0
SRD3_k127_167847_6 - - - - 0.00000000000000000008501 94.0
SRD3_k127_167847_7 - - - - 0.0000000000000000002361 96.0
SRD3_k127_167847_8 TIGRFAM phenazine biosynthesis protein PhzF family K06998 - 5.3.3.17 0.00002357 51.0
SRD3_k127_167847_9 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000272 48.0
SRD3_k127_179855_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2561.0
SRD3_k127_179855_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 2500.0
SRD3_k127_179855_10 receptor K02014 - - 3.914e-270 854.0
SRD3_k127_179855_11 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 3.66e-256 796.0
SRD3_k127_179855_12 X-Pro dipeptidyl-peptidase domain protein - - - 1.203e-251 801.0
SRD3_k127_179855_13 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 6.887e-205 641.0
SRD3_k127_179855_14 Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2) K01484 - 3.5.3.23 2.222e-196 621.0
SRD3_k127_179855_15 Na -driven multidrug efflux pump - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 590.0
SRD3_k127_179855_16 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 574.0
SRD3_k127_179855_17 synthase K00574 - 2.1.1.79 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 548.0
SRD3_k127_179855_18 Peptidase M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 544.0
SRD3_k127_179855_19 phosphate transporter K03306 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004746 531.0
SRD3_k127_179855_2 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1393.0
SRD3_k127_179855_20 aldo keto reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 519.0
SRD3_k127_179855_21 COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 520.0
SRD3_k127_179855_22 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 515.0
SRD3_k127_179855_23 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001738 515.0
SRD3_k127_179855_24 arginine N-succinyltransferase K00673 - 2.3.1.109 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000344 503.0
SRD3_k127_179855_25 Natural resistance-associated macrophage protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 501.0
SRD3_k127_179855_26 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 475.0
SRD3_k127_179855_27 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 454.0
SRD3_k127_179855_28 exopolyphosphatase K01524 - 3.6.1.11,3.6.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006427 422.0
SRD3_k127_179855_29 ornithine cyclodeaminase K01750 - 4.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 408.0
SRD3_k127_179855_3 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.0 1030.0
SRD3_k127_179855_30 PFAM Alpha beta hydrolase fold-3 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012 381.0
SRD3_k127_179855_31 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009462 368.0
SRD3_k127_179855_32 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004931 358.0
SRD3_k127_179855_33 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007768 346.0
SRD3_k127_179855_34 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 310.0
SRD3_k127_179855_35 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002683 305.0
SRD3_k127_179855_36 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 289.0
SRD3_k127_179855_37 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000492 291.0
SRD3_k127_179855_38 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002126 285.0
SRD3_k127_179855_39 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004232 276.0
SRD3_k127_179855_4 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 0.0 1010.0
SRD3_k127_179855_40 Protein of unknown function DUF47 K07220 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004747 269.0
SRD3_k127_179855_41 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001558 256.0
SRD3_k127_179855_42 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000006426 261.0
SRD3_k127_179855_43 Protein-disulfide isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001715 259.0
SRD3_k127_179855_44 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000000000000462 249.0
SRD3_k127_179855_45 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004421 239.0
SRD3_k127_179855_46 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000001415 232.0
SRD3_k127_179855_47 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000141 211.0
SRD3_k127_179855_48 PFAM MaoC domain protein dehydratase - - - 0.000000000000000000000000000000000000000000000000000008338 193.0
SRD3_k127_179855_49 6-phosphogluconate dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000001637 191.0
SRD3_k127_179855_5 peptidase S9 - - - 1e-323 1003.0
SRD3_k127_179855_50 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000001113 196.0
SRD3_k127_179855_51 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000000000000001369 192.0
SRD3_k127_179855_52 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000004418 192.0
SRD3_k127_179855_53 Aldo/keto reductase family K05882 - 1.1.1.91 0.000000000000000000000000000000000000000000000000005086 192.0
SRD3_k127_179855_54 Protein of unknown function (DUF998) - - - 0.000000000000000000000000000000000000000000000001389 181.0
SRD3_k127_179855_55 Dopa 4,5-dioxygenase family K10253 - - 0.00000000000000000000000000000000000000000003981 162.0
SRD3_k127_179855_57 Transglycosylase associated protein - - - 0.0000000000000000000000000000000000000000009854 158.0
SRD3_k127_179855_58 RadC-like JAB domain K03630 - - 0.000000000000000000000000000000000001042 147.0
SRD3_k127_179855_59 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000007592 128.0
SRD3_k127_179855_6 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.424e-318 990.0
SRD3_k127_179855_60 - - - - 0.000000000000000000000000001143 123.0
SRD3_k127_179855_61 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000001046 121.0
SRD3_k127_179855_62 - - - - 0.0000000000000000000001944 102.0
SRD3_k127_179855_63 - - - - 0.0000000000000000000006507 98.0
SRD3_k127_179855_64 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000000000003795 88.0
SRD3_k127_179855_65 - - - - 0.000000000000000001146 91.0
SRD3_k127_179855_66 cheY-homologous receiver domain - - - 0.00000000000000002817 86.0
SRD3_k127_179855_67 Transposase IS116/IS110/IS902 family K07486 - - 0.0000000000000003726 79.0
SRD3_k127_179855_69 protein conserved in bacteria K09991 - - 0.0000000000002763 70.0
SRD3_k127_179855_7 Penicillin-binding Protein K05366 - 2.4.1.129,3.4.16.4 6.66e-308 968.0
SRD3_k127_179855_70 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0000000001558 63.0
SRD3_k127_179855_77 to Multi-sensor hybrid histidine kinase of Yersinia UniRef RepID B1JNK1_YERPY K14978 - - 0.000007896 51.0
SRD3_k127_179855_78 - - - - 0.000009512 55.0
SRD3_k127_179855_8 aminopeptidase K01256 - 3.4.11.2 4.043e-304 956.0
SRD3_k127_179855_9 acyl-CoA dehydrogenase - - - 2.632e-284 883.0
SRD3_k127_1947385_0 ATP-dependent DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 5.561e-258 803.0
SRD3_k127_1947385_1 protease with the C-terminal PDZ - - - 7.316e-247 779.0
SRD3_k127_1947385_10 MTH538 TIR-like domain (DUF1863) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006423 431.0
SRD3_k127_1947385_11 Asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004566 359.0
SRD3_k127_1947385_12 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004393 354.0
SRD3_k127_1947385_13 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 343.0
SRD3_k127_1947385_14 DNA mediated transformation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001525 297.0
SRD3_k127_1947385_15 endoribonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000006466 237.0
SRD3_k127_1947385_16 EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000004866 241.0
SRD3_k127_1947385_17 Protein of unknown function (DUF1345) - - - 0.0000000000000000000000000000000000000000000000000000000002899 209.0
SRD3_k127_1947385_18 Acyl-CoA hydrolase K10806 - - 0.0000000000000000000000000000000000000000000000000000006782 194.0
SRD3_k127_1947385_19 Domain of unknown function (DUF4167) - - - 0.0000000000000000000000000000000000000000000000001623 184.0
SRD3_k127_1947385_2 Outer membrane receptor proteins, mostly Fe transport - - - 1.172e-211 689.0
SRD3_k127_1947385_20 response regulator K11443 - - 0.000000000000000000000000000000000000000000001251 169.0
SRD3_k127_1947385_21 Small Multidrug Resistance protein K11741 - - 0.00000000000000000000000000000000000000000000871 164.0
SRD3_k127_1947385_22 CBS domain - - - 0.000000000000000000000000000000000000000006588 160.0
SRD3_k127_1947385_23 glycerophosphoryl diester phosphodiesterase - - - 0.000000000000000000000000000000001289 139.0
SRD3_k127_1947385_24 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000000000001018 107.0
SRD3_k127_1947385_25 - - - - 0.000000000000000000002878 94.0
SRD3_k127_1947385_27 - - - - 0.000000000000000002046 87.0
SRD3_k127_1947385_28 Protein of unknown function (DUF3572) - - - 0.00000000000000001044 85.0
SRD3_k127_1947385_3 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 5.748e-210 656.0
SRD3_k127_1947385_31 - - - - 0.00000000002567 70.0
SRD3_k127_1947385_32 - - - - 0.000000008071 56.0
SRD3_k127_1947385_4 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 587.0
SRD3_k127_1947385_5 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002696 564.0
SRD3_k127_1947385_6 peptidase S10 serine carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009659 555.0
SRD3_k127_1947385_7 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 537.0
SRD3_k127_1947385_8 protein conserved in bacteria K09919 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 505.0
SRD3_k127_1947385_9 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 449.0
SRD3_k127_1953756_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1278.0
SRD3_k127_1953756_1 Belongs to the PEP-utilizing enzyme family K08484 - 2.7.3.9 0.0 1140.0
SRD3_k127_1953756_10 Alpha-amylase domain - - - 3.133e-263 823.0
SRD3_k127_1953756_100 PIN domain - - - 0.000000000000000000000000000000000000003836 153.0
SRD3_k127_1953756_101 Penicillinase repressor - - - 0.000000000000000000000000000000000000004592 150.0
SRD3_k127_1953756_102 succinate dehydrogenase activity K00242 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000003561 148.0
SRD3_k127_1953756_103 Transmembrane protease, serine 4 K09635 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0031224,GO:0043170,GO:0044238,GO:0044425,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.000000000000000000000000000000000001295 149.0
SRD3_k127_1953756_104 - - - - 0.000000000000000000000000000000000022 140.0
SRD3_k127_1953756_105 Preprotein translocase subunit YajC K03210 - - 0.0000000000000000000000000000000002824 135.0
SRD3_k127_1953756_106 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K00404 - 1.9.3.1 0.000000000000000000000000000000008191 131.0
SRD3_k127_1953756_107 Protein of unknown function (DUF3617) - - - 0.000000000000000000000000000008974 125.0
SRD3_k127_1953756_108 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000004167 126.0
SRD3_k127_1953756_109 - - - - 0.0000000000000000000000000003617 122.0
SRD3_k127_1953756_11 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 9.406e-250 781.0
SRD3_k127_1953756_110 - - - - 0.000000000000000000000000006521 115.0
SRD3_k127_1953756_111 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00000000000000000000000001199 111.0
SRD3_k127_1953756_112 - - - - 0.0000000000003653 74.0
SRD3_k127_1953756_114 addiction module antidote protein HigA - - - 0.00000003113 55.0
SRD3_k127_1953756_115 Aldolase K01625 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 4.1.2.14,4.1.3.42 0.000005792 49.0
SRD3_k127_1953756_116 Bacterial regulatory proteins, luxR family - - - 0.00001303 50.0
SRD3_k127_1953756_119 PilZ domain - - - 0.0002392 48.0
SRD3_k127_1953756_12 Alpha-amylase domain K01187 - 3.2.1.20 8.708e-247 772.0
SRD3_k127_1953756_13 single-stranded-DNA-specific exonuclease RecJ K07462 - - 1.671e-238 752.0
SRD3_k127_1953756_14 Tryptophan halogenase K14266 - 1.14.19.9 4.106e-233 730.0
SRD3_k127_1953756_15 Tryptophan halogenase - - - 7.893e-231 724.0
SRD3_k127_1953756_16 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 3.072e-229 720.0
SRD3_k127_1953756_17 Tryptophan halogenase - - - 2.703e-228 717.0
SRD3_k127_1953756_18 Sugar (and other) transporter K08369 - - 6.712e-227 722.0
SRD3_k127_1953756_19 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 2.421e-222 696.0
SRD3_k127_1953756_2 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 - 1.3.5.1,1.3.5.4 0.0 1099.0
SRD3_k127_1953756_20 COG0477 Permeases of the major facilitator superfamily K16211 - - 3.954e-220 703.0
SRD3_k127_1953756_21 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 2.875e-207 664.0
SRD3_k127_1953756_22 May be involved in recombinational repair of damaged DNA K03631 - - 1.517e-206 657.0
SRD3_k127_1953756_23 Belongs to the peptidase S41A family K03797 - 3.4.21.102 2.138e-204 647.0
SRD3_k127_1953756_24 Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations K01241 - 3.2.2.4 1.895e-203 644.0
SRD3_k127_1953756_25 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K00895,K21071 - 2.7.1.11,2.7.1.90 2.619e-201 632.0
SRD3_k127_1953756_26 amino acid peptide transporter K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 614.0
SRD3_k127_1953756_27 nucleoside K03317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 574.0
SRD3_k127_1953756_28 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005622 573.0
SRD3_k127_1953756_29 rod shape-determining protein MreB K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 558.0
SRD3_k127_1953756_3 Required for chromosome condensation and partitioning K03529 - - 0.0 1087.0
SRD3_k127_1953756_30 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006909 557.0
SRD3_k127_1953756_31 2-nitropropane dioxygenase K02371 - 1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 533.0
SRD3_k127_1953756_32 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 515.0
SRD3_k127_1953756_33 beta-glucosidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 506.0
SRD3_k127_1953756_34 Autotransporter beta-domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 507.0
SRD3_k127_1953756_35 peptidase M20 K01295 - 3.4.17.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 488.0
SRD3_k127_1953756_36 TIR domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 481.0
SRD3_k127_1953756_37 Rossmann fold nucleotide-binding protein K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 440.0
SRD3_k127_1953756_38 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008509 435.0
SRD3_k127_1953756_39 Cytochrome p450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 439.0
SRD3_k127_1953756_4 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0 1086.0
SRD3_k127_1953756_40 Inner membrane protein CreD - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 436.0
SRD3_k127_1953756_41 Alpha-amylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008211 431.0
SRD3_k127_1953756_42 amino acid peptide transporter K03305 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004305 412.0
SRD3_k127_1953756_43 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 397.0
SRD3_k127_1953756_44 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 404.0
SRD3_k127_1953756_45 Belongs to the pirin family K06911 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 396.0
SRD3_k127_1953756_46 glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 396.0
SRD3_k127_1953756_47 COG1609 Transcriptional regulators - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 392.0
SRD3_k127_1953756_48 Carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002909 387.0
SRD3_k127_1953756_49 chemotaxis K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000859 389.0
SRD3_k127_1953756_5 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 0.0 1061.0
SRD3_k127_1953756_50 Dehydrogenase K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002259 377.0
SRD3_k127_1953756_51 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003504 382.0
SRD3_k127_1953756_52 ribosomal protein L11 K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 370.0
SRD3_k127_1953756_53 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 367.0
SRD3_k127_1953756_54 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006 362.0
SRD3_k127_1953756_55 COG0491 Zn-dependent hydrolases, including glyoxylases K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005409 355.0
SRD3_k127_1953756_56 dienelactone hydrolase K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 344.0
SRD3_k127_1953756_57 beta-lactamase K17836 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619 327.0
SRD3_k127_1953756_58 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 307.0
SRD3_k127_1953756_59 Belongs to the Nudix hydrolase family K03426 - 3.6.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 312.0
SRD3_k127_1953756_6 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.0 1046.0
SRD3_k127_1953756_60 S1/P1 Nuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001766 306.0
SRD3_k127_1953756_61 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 305.0
SRD3_k127_1953756_62 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 299.0
SRD3_k127_1953756_63 COG0122 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K01247 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 297.0
SRD3_k127_1953756_64 Protein of unknown function (DUF3667) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001746 300.0
SRD3_k127_1953756_65 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007752 293.0
SRD3_k127_1953756_66 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007728 283.0
SRD3_k127_1953756_67 Dienelactone hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002709 283.0
SRD3_k127_1953756_68 Putative esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003038 280.0
SRD3_k127_1953756_69 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000603 274.0
SRD3_k127_1953756_7 Glycosyl hydrolases family 31 K01187 - 3.2.1.20 4.1e-321 1000.0
SRD3_k127_1953756_70 RES - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001858 269.0
SRD3_k127_1953756_71 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000009097 268.0
SRD3_k127_1953756_72 cytochrome C K08738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001313 261.0
SRD3_k127_1953756_73 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007094 259.0
SRD3_k127_1953756_74 Protein of unknown function, DUF488 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003483 241.0
SRD3_k127_1953756_75 COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007159 240.0
SRD3_k127_1953756_76 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.0000000000000000000000000000000000000000000000000000000000000001625 230.0
SRD3_k127_1953756_77 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.0000000000000000000000000000000000000000000000000000000000000005532 225.0
SRD3_k127_1953756_78 Domain of unknown function (DUF4115) - - - 0.000000000000000000000000000000000000000000000000000000000000004014 228.0
SRD3_k127_1953756_79 Protein of unknown function (DUF721) - - - 0.00000000000000000000000000000000000000000000000000000000000002274 227.0
SRD3_k127_1953756_8 COG1629 Outer membrane receptor proteins, mostly Fe transport K02014 - - 1.063e-317 997.0
SRD3_k127_1953756_80 Diacylglycerol kinase - - - 0.0000000000000000000000000000000000000000000000000000000000005304 221.0
SRD3_k127_1953756_81 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000006024 220.0
SRD3_k127_1953756_82 Antirepressor regulating drug resistance - - - 0.00000000000000000000000000000000000000000000000000000000002244 225.0
SRD3_k127_1953756_83 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000000000000000000000000000007024 201.0
SRD3_k127_1953756_84 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000006854 207.0
SRD3_k127_1953756_85 - - - - 0.000000000000000000000000000000000000000000000000000001806 202.0
SRD3_k127_1953756_86 Protein of unknown function (DUF1211) - - - 0.000000000000000000000000000000000000000000000000000002161 196.0
SRD3_k127_1953756_87 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000000008276 198.0
SRD3_k127_1953756_88 Membrane-bound metallopeptidase - - - 0.00000000000000000000000000000000000000000000000000006593 204.0
SRD3_k127_1953756_89 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000001002 188.0
SRD3_k127_1953756_9 protein conserved in bacteria - - - 1.24e-270 847.0
SRD3_k127_1953756_90 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000000000000000000000000000001663 184.0
SRD3_k127_1953756_91 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000004545 181.0
SRD3_k127_1953756_92 Thioredoxin - - - 0.0000000000000000000000000000000000000000000000001624 184.0
SRD3_k127_1953756_93 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000000000000000435 181.0
SRD3_k127_1953756_94 Disulfide bond formation protein - - - 0.0000000000000000000000000000000000000000000000008521 180.0
SRD3_k127_1953756_96 succinate dehydrogenase K00241 - - 0.0000000000000000000000000000000000000000001511 163.0
SRD3_k127_1953756_97 Protein of unknown function (DUF2459) - - - 0.00000000000000000000000000000000000000003065 161.0
SRD3_k127_1953756_98 dioxygenase activity K00477,K10674 - 1.14.11.18,1.14.11.55 0.0000000000000000000000000000000000000001135 162.0
SRD3_k127_1953756_99 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000004636 155.0
SRD3_k127_2008503_0 TonB-dependent Receptor Plug Domain - - - 0.0 1018.0
SRD3_k127_2008503_1 Sulfotransferase family - - - 2.58e-219 693.0
SRD3_k127_2008503_10 dehydratase - - - 0.00000000000000000000000000000000000000000000000000000001705 203.0
SRD3_k127_2008503_11 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000000002193 119.0
SRD3_k127_2008503_12 - - - - 0.000000000000000001499 91.0
SRD3_k127_2008503_13 - - - - 0.0004688 46.0
SRD3_k127_2008503_2 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 592.0
SRD3_k127_2008503_3 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001791 581.0
SRD3_k127_2008503_4 Receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 556.0
SRD3_k127_2008503_5 Alternative oxidase K17893 - 1.10.3.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 381.0
SRD3_k127_2008503_6 Cytochrome c1 K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006796 380.0
SRD3_k127_2008503_7 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006025 319.0
SRD3_k127_2008503_8 photosynthesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001735 280.0
SRD3_k127_2008503_9 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001205 279.0
SRD3_k127_2030901_0 amine dehydrogenase activity - - - 0.0 1263.0
SRD3_k127_2030901_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 2.38e-305 948.0
SRD3_k127_2030901_10 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 515.0
SRD3_k127_2030901_11 COG0604 NADPH quinone reductase and related Zn-dependent oxidoreductases K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002092 496.0
SRD3_k127_2030901_12 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 453.0
SRD3_k127_2030901_13 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005967 438.0
SRD3_k127_2030901_14 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 441.0
SRD3_k127_2030901_15 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 406.0
SRD3_k127_2030901_16 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 407.0
SRD3_k127_2030901_17 Acyl CoA acetate 3-ketoacid CoA transferase, beta subunit K01029 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005188 385.0
SRD3_k127_2030901_18 L,D-transpeptidase catalytic domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 391.0
SRD3_k127_2030901_19 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 361.0
SRD3_k127_2030901_2 Belongs to the TPP enzyme family K01652 - 2.2.1.6 5.717e-302 934.0
SRD3_k127_2030901_20 asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004892 346.0
SRD3_k127_2030901_21 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 287.0
SRD3_k127_2030901_22 HAD superfamily, subfamily IIIB (Acid phosphatase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004267 270.0
SRD3_k127_2030901_23 ubiE/COQ5 methyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005452 252.0
SRD3_k127_2030901_24 Cold shock protein domain K03704 - - 0.0000000000000000000000000000000000000000000000000000000000000001283 226.0
SRD3_k127_2030901_26 Cytochrome b561 K12262 - - 0.0000000000000000000000000000000000000000000000000000000001192 211.0
SRD3_k127_2030901_27 Protein of unknown function (DUF4230) - - - 0.00000000000000000000000000000000000000000000000001219 188.0
SRD3_k127_2030901_28 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000000001498 175.0
SRD3_k127_2030901_29 NADH ubiquinone oxidoreductase 17.2 kD subunit - - - 0.0000000000000000000000000000000000000000000002102 170.0
SRD3_k127_2030901_3 COG0318 Acyl-CoA synthetases (AMP-forming) AMP-acid ligases II K00666 - - 3.307e-298 924.0
SRD3_k127_2030901_30 Domain of unknown function (DUF4112) - - - 0.0000000000000000000000000000000000000000000003149 177.0
SRD3_k127_2030901_31 Regulatory protein RecX K03565 - - 0.0000000000000000000000000000000000000000000004493 175.0
SRD3_k127_2030901_32 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000004127 174.0
SRD3_k127_2030901_33 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000000000000000499 172.0
SRD3_k127_2030901_34 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000001462 162.0
SRD3_k127_2030901_35 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. - - - 0.0000000000000000000000000000000000000006072 154.0
SRD3_k127_2030901_36 PFAM Sterol-binding domain protein - - - 0.000000000000000000000000000000000000007477 147.0
SRD3_k127_2030901_37 arsenate reductase K00537 - 1.20.4.1 0.00000000000000000000000000000000000003555 146.0
SRD3_k127_2030901_38 Domain of unknown function (DUF1476) - - - 0.0000000000000000000000000000000000006044 141.0
SRD3_k127_2030901_39 Belongs to the BolA IbaG family - - - 0.000000000000000000000000000001004 122.0
SRD3_k127_2030901_4 Penicillin-binding Protein K05366 - 2.4.1.129,3.4.16.4 2.97e-275 860.0
SRD3_k127_2030901_40 - - - - 0.000000000000000000000000000002321 125.0
SRD3_k127_2030901_41 - - - - 0.0000000000000000000000000001605 119.0
SRD3_k127_2030901_42 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000006664 116.0
SRD3_k127_2030901_43 ThiS family - - - 0.000000000000000000000027 101.0
SRD3_k127_2030901_44 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000000000005315 106.0
SRD3_k127_2030901_45 Head domain of trimeric autotransporter adhesin K21449 - - 0.00000000000000001799 86.0
SRD3_k127_2030901_46 - - - - 0.00000000000000002863 85.0
SRD3_k127_2030901_47 SnoaL-like domain - - - 0.0000000000000005152 85.0
SRD3_k127_2030901_49 - - - - 0.0000000009275 64.0
SRD3_k127_2030901_5 An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism K01961 - 6.3.4.14,6.4.1.2 4.495e-241 758.0
SRD3_k127_2030901_6 belongs to the aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 1.2e-216 681.0
SRD3_k127_2030901_7 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 5.303e-196 614.0
SRD3_k127_2030901_8 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003802 607.0
SRD3_k127_2030901_9 Erythromycin esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 565.0
SRD3_k127_2058560_0 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 3.154e-292 915.0
SRD3_k127_2058560_1 Glycine dehydrogenase (aminomethyl-transferring) K00283 - 1.4.4.2 2.623e-287 887.0
SRD3_k127_2058560_10 type II secretion system protein K12511 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008772 524.0
SRD3_k127_2058560_11 aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 504.0
SRD3_k127_2058560_12 Glycine cleavage system T protein K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 497.0
SRD3_k127_2058560_13 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 478.0
SRD3_k127_2058560_14 Pilus assembly protein CpaB K02279 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007137 457.0
SRD3_k127_2058560_15 pilus assembly protein TadB K12510 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 444.0
SRD3_k127_2058560_16 Secretion protein, HlyD K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004491 381.0
SRD3_k127_2058560_17 Oxidoreductase K19746 - 1.4.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000468 381.0
SRD3_k127_2058560_18 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 359.0
SRD3_k127_2058560_19 Methionine biosynthesis protein MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 335.0
SRD3_k127_2058560_2 Belongs to the TPP enzyme family K00156,K00158 - 1.2.3.3,1.2.5.1 1.013e-262 820.0
SRD3_k127_2058560_20 protein conserved in bacteria K09973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 313.0
SRD3_k127_2058560_21 Amidinotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001136 260.0
SRD3_k127_2058560_22 Protein of unknown function (DUF938) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004469 250.0
SRD3_k127_2058560_23 gag-polyprotein putative aspartyl protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008164 255.0
SRD3_k127_2058560_24 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000002732 237.0
SRD3_k127_2058560_25 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001411 233.0
SRD3_k127_2058560_26 Pilus assembly protein CpaD K02281 - - 0.0000000000000000000000000000000000000000000000000000000000000008486 231.0
SRD3_k127_2058560_27 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.00000000000000000000000000000000000000000000000000000001547 202.0
SRD3_k127_2058560_28 protein conserved in bacteria K09973 - - 0.000000000000000000000000000000000000000000000000002579 191.0
SRD3_k127_2058560_29 Endoribonuclease L-PSP - - - 0.00000000000000000000000000000000000000000000001097 177.0
SRD3_k127_2058560_3 Flp pilus assembly protein, ATPase CpaE K02282 - - 3.581e-230 719.0
SRD3_k127_2058560_30 helix_turn_helix multiple antibiotic resistance protein - - - 0.00000000000000000000000000000000000000000001239 167.0
SRD3_k127_2058560_31 Protein of unknown function (DUF1453) - - - 0.0000000000000000000000000000000000000000001056 169.0
SRD3_k127_2058560_32 peptidase K02278 - 3.4.23.43 0.000000000000000000000000000000000000001655 153.0
SRD3_k127_2058560_33 - - - - 0.000000000000000000000000000001257 130.0
SRD3_k127_2058560_35 PilZ domain - - - 0.0000000000000000000477 99.0
SRD3_k127_2058560_36 COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases K21563 - - 0.000000000000000000845 97.0
SRD3_k127_2058560_37 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000006007 81.0
SRD3_k127_2058560_39 YCII-related domain K09780 - - 0.000004704 52.0
SRD3_k127_2058560_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 1.499e-224 707.0
SRD3_k127_2058560_5 Major facilitator superfamily K03446 - - 5.804e-216 681.0
SRD3_k127_2058560_6 Belongs to the glycosyl hydrolase 1 family - - - 6.428e-206 655.0
SRD3_k127_2058560_7 Belongs to the GSP D family K02280 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 609.0
SRD3_k127_2058560_8 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004143 590.0
SRD3_k127_2058560_9 glycyl-tRNA synthetase alpha subunit K01878 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005304 522.0
SRD3_k127_280688_0 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0 1124.0
SRD3_k127_280688_1 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.0 1094.0
SRD3_k127_280688_10 de-polymerase K05973 - 3.1.1.75 3.722e-205 644.0
SRD3_k127_280688_11 Ring hydroxylating alpha subunit (catalytic domain) - - - 4.594e-204 639.0
SRD3_k127_280688_12 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 1.747e-196 618.0
SRD3_k127_280688_13 Phenylacetic acid catabolic protein K02609 - 1.14.13.149 1.115e-194 610.0
SRD3_k127_280688_14 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 579.0
SRD3_k127_280688_15 TIGRFAM drug resistance transporter, EmrB QacA subfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006222 554.0
SRD3_k127_280688_16 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 547.0
SRD3_k127_280688_17 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 544.0
SRD3_k127_280688_18 PFAM Aminotransferase class I and II K00832 - 2.6.1.57 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006924 542.0
SRD3_k127_280688_19 Oxidoreductase FAD-binding domain K00523,K02613 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 501.0
SRD3_k127_280688_2 Heat shock 70 kDa protein K04043 - - 0.0 1088.0
SRD3_k127_280688_20 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005154 479.0
SRD3_k127_280688_21 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 469.0
SRD3_k127_280688_22 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 467.0
SRD3_k127_280688_23 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 459.0
SRD3_k127_280688_24 protein conserved in bacteria K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002039 447.0
SRD3_k127_280688_25 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008928 435.0
SRD3_k127_280688_26 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 430.0
SRD3_k127_280688_27 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 405.0
SRD3_k127_280688_28 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005837 394.0
SRD3_k127_280688_29 enoyl-CoA hydratase K15866 - 5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004928 378.0
SRD3_k127_280688_3 Dicarboxylate transport - - - 4.42e-316 1000.0
SRD3_k127_280688_30 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005497 378.0
SRD3_k127_280688_31 Phenylacetic acid catabolic protein K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002413 364.0
SRD3_k127_280688_32 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001792 346.0
SRD3_k127_280688_33 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007258 344.0
SRD3_k127_280688_34 mechanosensitive ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001586 341.0
SRD3_k127_280688_35 Short-chain dehydrogenase reductase sdr - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004131 330.0
SRD3_k127_280688_36 amino acid K03294,K03759 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006385 325.0
SRD3_k127_280688_37 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001272 311.0
SRD3_k127_280688_38 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005864 300.0
SRD3_k127_280688_39 Binds to the 23S rRNA K02939 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004847 294.0
SRD3_k127_280688_4 ABC-type multidrug transport system, ATPase and permease K06147 - - 2.251e-244 767.0
SRD3_k127_280688_40 PFAM inositol monophosphatase K01082 - 3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001818 291.0
SRD3_k127_280688_41 COG3243 Poly(3-hydroxyalkanoate) synthetase K03821 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008064 293.0
SRD3_k127_280688_42 beta' subunit K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004837 281.0
SRD3_k127_280688_43 Protein of unknown function (DUF2490) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004761 269.0
SRD3_k127_280688_44 AI-2E family transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000331 263.0
SRD3_k127_280688_45 XRE family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004381 251.0
SRD3_k127_280688_46 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000005804 252.0
SRD3_k127_280688_47 MaoC like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000483 222.0
SRD3_k127_280688_48 Glutathione S-transferase, C-terminal domain K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000001459 211.0
SRD3_k127_280688_49 synthesis repressor PhaR - - - 0.000000000000000000000000000000000000000000000000000000001116 213.0
SRD3_k127_280688_5 Membrane bound O-acyl transferase, MBOAT family protein - - - 5.482e-237 739.0
SRD3_k127_280688_50 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000000000000000000000000000000000000001062 191.0
SRD3_k127_280688_51 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.0000000000000000000000000000000000000000000000000005452 193.0
SRD3_k127_280688_52 - - - - 0.0000000000000000000000000000000000000000000000004666 187.0
SRD3_k127_280688_53 Phenylacetic acid degradation B K02610 - - 0.00000000000000000000000000000000000000000000004123 172.0
SRD3_k127_280688_54 Arginine repressor, DNA binding domain K03402 - - 0.000000000000000000000000000000000000000000382 163.0
SRD3_k127_280688_55 - - - - 0.000000000000000000000000000000000000000001112 162.0
SRD3_k127_280688_56 Thioesterase superfamily K02614 - - 0.00000000000000000000000000000000000000007202 155.0
SRD3_k127_280688_57 Core-2/I-Branching enzyme - - - 0.0000000000000000000000000000000000000005849 160.0
SRD3_k127_280688_58 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.000000000000000000000000000000000000001483 153.0
SRD3_k127_280688_59 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000001356 149.0
SRD3_k127_280688_6 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 2.174e-235 732.0
SRD3_k127_280688_60 Sugar-specific transcriptional regulator TrmB - - - 0.0000000000000000000000000000000000007555 141.0
SRD3_k127_280688_61 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.0000000000000000000000000000000000008279 139.0
SRD3_k127_280688_62 - - - - 0.0000000000000000000000000000000000009703 145.0
SRD3_k127_280688_63 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000000000000000000000000009142 138.0
SRD3_k127_280688_64 protein conserved in bacteria K09978 - - 0.0000000000000000000000000001121 120.0
SRD3_k127_280688_65 Phytochrome region - - - 0.0000000000000000000000000008735 124.0
SRD3_k127_280688_66 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000007797 108.0
SRD3_k127_280688_68 - - - - 0.0000000000000000000000007159 116.0
SRD3_k127_280688_69 - - - - 0.000000000000000000000004647 103.0
SRD3_k127_280688_7 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 4.61e-233 726.0
SRD3_k127_280688_70 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000001242 102.0
SRD3_k127_280688_71 - - - - 0.0000000000000000000005242 99.0
SRD3_k127_280688_72 function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex K02116 - - 0.000000000000000000009533 97.0
SRD3_k127_280688_73 - - - - 0.00000000000000000004335 96.0
SRD3_k127_280688_74 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.00000000000000000008186 93.0
SRD3_k127_280688_75 Protein of unknown function (DUF3309) - - - 0.0000000000000003164 82.0
SRD3_k127_280688_77 DNA-binding transcription factor activity - - - 0.000000002972 65.0
SRD3_k127_280688_8 argininosuccinate lyase K01755 - 4.3.2.1 1.34e-213 674.0
SRD3_k127_280688_9 acyl-CoA dehydrogenase K00249 - 1.3.8.7 5.998e-208 652.0
SRD3_k127_2896020_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K15372 - 2.6.1.55 1.082e-227 711.0
SRD3_k127_3051768_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1557.0
SRD3_k127_3051768_1 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0 1396.0
SRD3_k127_3051768_10 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274,K02298,K15408 - 1.10.3.10,1.9.3.1 2.232e-258 812.0
SRD3_k127_3051768_100 Cold-shock protein K03704 - - 0.0000000000000000000000000008242 116.0
SRD3_k127_3051768_101 - - - - 0.000000000000000000000000003224 113.0
SRD3_k127_3051768_102 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000000000005969 114.0
SRD3_k127_3051768_103 Transcriptional regulator K07727 - - 0.00000000000000000000000004409 109.0
SRD3_k127_3051768_104 Protein of unknown function (DUF3833) - - - 0.00000000000000000000000008017 115.0
SRD3_k127_3051768_105 - - - - 0.0000000000000000000002427 104.0
SRD3_k127_3051768_106 positive regulation of macromolecule biosynthetic process K03973 - - 0.0000000000000000004688 92.0
SRD3_k127_3051768_107 - - - - 0.000000000000000002093 86.0
SRD3_k127_3051768_108 - - - - 0.000000000000000002383 88.0
SRD3_k127_3051768_109 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000000002574 94.0
SRD3_k127_3051768_11 glucuronate isomerase K01812 - 5.3.1.12 4.612e-238 743.0
SRD3_k127_3051768_110 - - - - 0.000000000000003901 83.0
SRD3_k127_3051768_111 Helix-turn-helix XRE-family like proteins K15773 - - 0.00000000000001348 77.0
SRD3_k127_3051768_112 Recombinase zinc beta ribbon domain - - - 0.0000000000004212 68.0
SRD3_k127_3051768_113 Helix-turn-helix domain - - - 0.0000000000005915 75.0
SRD3_k127_3051768_114 Belongs to the 'phage' integrase family - - - 0.000000000006706 66.0
SRD3_k127_3051768_117 - - - - 0.000000003056 60.0
SRD3_k127_3051768_118 SnoaL-like domain - - - 0.000000007829 64.0
SRD3_k127_3051768_119 - - - - 0.000000008964 59.0
SRD3_k127_3051768_12 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes K00639,K00652 - 2.3.1.29,2.3.1.47 4.891e-227 706.0
SRD3_k127_3051768_121 - - - - 0.0000003198 59.0
SRD3_k127_3051768_122 PFAM KAP P-loop domain protein - - - 0.0000008978 54.0
SRD3_k127_3051768_124 - - - - 0.000001704 52.0
SRD3_k127_3051768_125 - - - - 0.00001009 56.0
SRD3_k127_3051768_126 - - - - 0.00001565 51.0
SRD3_k127_3051768_127 - - - - 0.00002133 50.0
SRD3_k127_3051768_128 - - - - 0.00002691 50.0
SRD3_k127_3051768_129 DnaJ molecular chaperone homology domain - GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464 - 0.00002845 56.0
SRD3_k127_3051768_13 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 2.969e-220 690.0
SRD3_k127_3051768_131 Stress-induced bacterial acidophilic repeat motif K06884 - - 0.00004682 47.0
SRD3_k127_3051768_132 PFAM Integrase catalytic - - - 0.00008328 46.0
SRD3_k127_3051768_133 - - - - 0.00008977 49.0
SRD3_k127_3051768_134 - - - - 0.0004585 44.0
SRD3_k127_3051768_135 'Cold-shock' DNA-binding domain K03704 - - 0.0006811 46.0
SRD3_k127_3051768_14 Major Facilitator - - - 4.717e-220 695.0
SRD3_k127_3051768_15 receptor - - - 1.131e-218 696.0
SRD3_k127_3051768_16 COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - - - 1.097e-214 672.0
SRD3_k127_3051768_17 Hexuranate MFS transporter K08191 - - 7.424e-212 665.0
SRD3_k127_3051768_18 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 2.269e-196 616.0
SRD3_k127_3051768_19 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00167 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004527 595.0
SRD3_k127_3051768_2 amine dehydrogenase activity - - - 0.0 1271.0
SRD3_k127_3051768_20 HipA-like C-terminal domain K07154 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003682 591.0
SRD3_k127_3051768_21 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005917 576.0
SRD3_k127_3051768_22 outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008456 583.0
SRD3_k127_3051768_23 Aspartyl protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003515 567.0
SRD3_k127_3051768_24 Glycosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 557.0
SRD3_k127_3051768_25 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 564.0
SRD3_k127_3051768_26 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 - 2.3.1.168 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 550.0
SRD3_k127_3051768_27 RNB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000223 540.0
SRD3_k127_3051768_28 Conserved TM helix - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 539.0
SRD3_k127_3051768_29 copper resistance - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 534.0
SRD3_k127_3051768_3 Transketolase, thiamine diphosphate binding domain K00163 - 1.2.4.1 0.0 1184.0
SRD3_k127_3051768_30 YjgP YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000262 519.0
SRD3_k127_3051768_31 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 507.0
SRD3_k127_3051768_32 COG2831 Hemolysin activation secretion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007411 518.0
SRD3_k127_3051768_33 PFAM alpha beta hydrolase fold K00433 - 1.11.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004735 497.0
SRD3_k127_3051768_34 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109 495.0
SRD3_k127_3051768_35 PFAM Mannitol dehydrogenase K00040,K00045 - 1.1.1.57,1.1.1.67 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 492.0
SRD3_k127_3051768_36 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 440.0
SRD3_k127_3051768_37 Calcineurin-like phosphoesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004417 429.0
SRD3_k127_3051768_38 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 425.0
SRD3_k127_3051768_39 Sulfotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 435.0
SRD3_k127_3051768_4 receptor K02014 - - 0.0 1046.0
SRD3_k127_3051768_40 Diacylglycerol kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 411.0
SRD3_k127_3051768_41 Repeat of Unknown Function (DUF347) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009476 404.0
SRD3_k127_3051768_42 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 409.0
SRD3_k127_3051768_43 YjgP YjgQ family K11720 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 407.0
SRD3_k127_3051768_44 exodeoxyribonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008089 395.0
SRD3_k127_3051768_45 Predicted metal-dependent hydrolase K07044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 390.0
SRD3_k127_3051768_46 Belongs to the HpcH HpaI aldolase family K01644 - 4.1.3.34 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004948 385.0
SRD3_k127_3051768_47 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004549 381.0
SRD3_k127_3051768_48 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003099 377.0
SRD3_k127_3051768_49 6-phosphogluconolactonase K01057 - 3.1.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 355.0
SRD3_k127_3051768_5 Peptidase family M3 K01284 - 3.4.15.5 1.134e-320 995.0
SRD3_k127_3051768_50 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 349.0
SRD3_k127_3051768_51 NAD(P)H-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 341.0
SRD3_k127_3051768_52 Protease prsW family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001576 325.0
SRD3_k127_3051768_53 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 326.0
SRD3_k127_3051768_54 cytochrome c oxidase subunit II K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002289 304.0
SRD3_k127_3051768_55 VIT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 287.0
SRD3_k127_3051768_56 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006995 289.0
SRD3_k127_3051768_57 Crp-like helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007624 283.0
SRD3_k127_3051768_59 Phage shock protein A K03969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005043 275.0
SRD3_k127_3051768_6 Belongs to the peptidase M16 family - - - 7.765e-318 1000.0
SRD3_k127_3051768_60 Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity K01118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002524 262.0
SRD3_k127_3051768_61 PFAM Methyltransferase type 11 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002727 263.0
SRD3_k127_3051768_62 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001532 256.0
SRD3_k127_3051768_63 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000751 260.0
SRD3_k127_3051768_64 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001259 259.0
SRD3_k127_3051768_65 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000003116 241.0
SRD3_k127_3051768_66 gag-polyprotein putative aspartyl protease K06985 - - 0.000000000000000000000000000000000000000000000000000000000000000000001431 241.0
SRD3_k127_3051768_67 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000004065 242.0
SRD3_k127_3051768_68 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000000000000000000007715 235.0
SRD3_k127_3051768_69 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000008509 237.0
SRD3_k127_3051768_7 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 6.997e-310 959.0
SRD3_k127_3051768_70 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000001455 237.0
SRD3_k127_3051768_71 Belongs to the SOS response-associated peptidase family - - - 0.000000000000000000000000000000000000000000000000000000000000004981 221.0
SRD3_k127_3051768_72 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.000000000000000000000000000000000000000000000000000000000000005632 224.0
SRD3_k127_3051768_73 Sulfotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000009279 229.0
SRD3_k127_3051768_74 COG3210 Large exoproteins involved in heme utilization or adhesion - - - 0.0000000000000000000000000000000000000000000000000000000001951 232.0
SRD3_k127_3051768_75 AntiSigma factor - - - 0.000000000000000000000000000000000000000000000000000000001046 209.0
SRD3_k127_3051768_76 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000001462 210.0
SRD3_k127_3051768_77 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000000000008553 203.0
SRD3_k127_3051768_78 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000000000000009301 194.0
SRD3_k127_3051768_79 CRP FNR family K01420 - - 0.00000000000000000000000000000000000000000000000000003184 197.0
SRD3_k127_3051768_8 protein conserved in bacteria - - - 6.561e-298 945.0
SRD3_k127_3051768_80 fatty acid desaturase K00508 - 1.14.19.3 0.0000000000000000000000000000000000000000000000000001153 203.0
SRD3_k127_3051768_81 - - - - 0.0000000000000000000000000000000000000000000000000007751 190.0
SRD3_k127_3051768_82 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000000000000000000000000001411 191.0
SRD3_k127_3051768_83 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000000000002297 188.0
SRD3_k127_3051768_84 Cytochrome c oxidase subunit III - - - 0.000000000000000000000000000000000000000000000000006677 190.0
SRD3_k127_3051768_85 transcriptional - - - 0.00000000000000000000000000000000000000000000000005859 186.0
SRD3_k127_3051768_86 small integral membrane protein - - - 0.000000000000000000000000000000000000000000000001225 178.0
SRD3_k127_3051768_87 Uracil-DNA glycosylase superfamily - - - 0.00000000000000000000000000000000000000000000003727 175.0
SRD3_k127_3051768_88 DNA-binding protein K11940 - - 0.00000000000000000000000000000000000000000000005876 171.0
SRD3_k127_3051768_89 Glyoxalase - - - 0.000000000000000000000000000000000000000000002176 168.0
SRD3_k127_3051768_9 heavy metal translocating P-type ATPase K17686 - 3.6.3.54 2.989e-290 908.0
SRD3_k127_3051768_90 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000008795 165.0
SRD3_k127_3051768_91 - - - - 0.0000000000000000000000000000000000000003761 159.0
SRD3_k127_3051768_92 Protein of unknown function (DUF3297) - - - 0.0000000000000000000000000000000000000004475 150.0
SRD3_k127_3051768_93 structural constituent of ribosome K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000141 148.0
SRD3_k127_3051768_95 small heat shock protein - - - 0.000000000000000000000000000000000006156 143.0
SRD3_k127_3051768_96 YjbR - - - 0.00000000000000000000000000000000007299 136.0
SRD3_k127_3051768_97 lactoylglutathione lyase activity K00941,K01724,K01759,K07032,K08234 - 2.7.1.49,2.7.4.7,4.2.1.96,4.4.1.5 0.00000000000000000000000000000004442 128.0
SRD3_k127_3051768_98 Cytochrome c - - - 0.000000000000000000000000000003886 125.0
SRD3_k127_3051768_99 acyl carrier protein - - - 0.00000000000000000000000000002467 120.0
SRD3_k127_3066529_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1444.0
SRD3_k127_3066529_1 DNA ligase K01971 - 6.5.1.1 0.0 1186.0
SRD3_k127_3066529_10 glutamate--cysteine ligase K01919 - 6.3.2.2 6.574e-223 698.0
SRD3_k127_3066529_11 Belongs to the peptidase S1C family K04771 - 3.4.21.107 8.307e-209 661.0
SRD3_k127_3066529_12 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 587.0
SRD3_k127_3066529_13 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 575.0
SRD3_k127_3066529_14 modulator of DNA gyrase K03592 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003631 513.0
SRD3_k127_3066529_15 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 498.0
SRD3_k127_3066529_16 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002797 486.0
SRD3_k127_3066529_17 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 - 2.4.2.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 466.0
SRD3_k127_3066529_18 Belongs to the peptidase S33 family K01259 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001907 436.0
SRD3_k127_3066529_19 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 401.0
SRD3_k127_3066529_2 TonB-dependent Receptor Plug Domain - - - 4.176e-299 945.0
SRD3_k127_3066529_20 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 410.0
SRD3_k127_3066529_21 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 399.0
SRD3_k127_3066529_22 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 390.0
SRD3_k127_3066529_23 HflC and HflK could encode or regulate a protease K04088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002907 386.0
SRD3_k127_3066529_24 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003417 370.0
SRD3_k127_3066529_25 Major Facilitator Superfamily K02429 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009435 375.0
SRD3_k127_3066529_26 HflC and HflK could regulate a protease K04087 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 367.0
SRD3_k127_3066529_27 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 356.0
SRD3_k127_3066529_28 Catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 353.0
SRD3_k127_3066529_29 lipolytic protein G-D-S-L family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 337.0
SRD3_k127_3066529_3 COG2366 Protein related to penicillin acylase K07116 - 3.5.1.97 2.51e-292 913.0
SRD3_k127_3066529_30 Glycosyl hydrolase family 20, domain 2 K12373 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004537 339.0
SRD3_k127_3066529_31 lacI family K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008029 313.0
SRD3_k127_3066529_32 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006187 296.0
SRD3_k127_3066529_33 Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily K09457 - 1.7.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003273 280.0
SRD3_k127_3066529_34 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001694 268.0
SRD3_k127_3066529_35 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000003413 269.0
SRD3_k127_3066529_36 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000786 260.0
SRD3_k127_3066529_37 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002572 241.0
SRD3_k127_3066529_38 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002935 239.0
SRD3_k127_3066529_39 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.0000000000000000000000000000000000000000000000000000000000000009284 219.0
SRD3_k127_3066529_4 PFAM glycoside hydrolase family 3 domain protein K05349 - 3.2.1.21 4.291e-289 905.0
SRD3_k127_3066529_40 Predicted membrane protein (DUF2127) - - - 0.0000000000000000000000000000000000000000000000000000007395 199.0
SRD3_k127_3066529_41 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000000000000000000000000006921 194.0
SRD3_k127_3066529_42 Protein of unknown function (DUF3035) - - - 0.0000000000000000000000000000000172 131.0
SRD3_k127_3066529_44 - - - - 0.000000004451 65.0
SRD3_k127_3066529_45 SnoaL-like domain - - - 0.000002492 57.0
SRD3_k127_3066529_46 helix_turn_helix, Lux Regulon - - - 0.00002189 53.0
SRD3_k127_3066529_47 - - - - 0.0001562 45.0
SRD3_k127_3066529_5 Metal-independent alpha-mannosidase (GH125) K09704 - - 1.165e-281 880.0
SRD3_k127_3066529_6 Transporter - - - 4.04e-278 871.0
SRD3_k127_3066529_7 PFAM Glycoside hydrolase 15-related - - - 2.431e-257 811.0
SRD3_k127_3066529_8 Glycosyl hydrolase family 3 C-terminal domain - - - 1.507e-236 749.0
SRD3_k127_3066529_9 Tryptophan halogenase K14266 - 1.14.19.9 1.113e-235 739.0
SRD3_k127_3084048_0 receptor - - - 0.0 1157.0
SRD3_k127_3084048_1 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.0 1099.0
SRD3_k127_3084048_10 Alpha-L-fucosidase K01206 - 3.2.1.51 9.898e-231 725.0
SRD3_k127_3084048_11 Glycoside hydrolase - - - 2.717e-228 718.0
SRD3_k127_3084048_12 Aldehyde dehydrogenase K22187 - - 7.545e-226 709.0
SRD3_k127_3084048_13 Tryptophan halogenase K14266 - 1.14.19.9 8.769e-226 710.0
SRD3_k127_3084048_14 Sugar (and other) transporter - - - 1.058e-216 683.0
SRD3_k127_3084048_15 Beta-galactosidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 610.0
SRD3_k127_3084048_16 Alpha galactosidase A C-terminal beta sandwich domain K07407 - 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 572.0
SRD3_k127_3084048_17 Carbohydrate esterase, sialic acid-specific acetylesterase K05970 - 3.1.1.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 587.0
SRD3_k127_3084048_18 Domain of unknown function (DUF4172) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 569.0
SRD3_k127_3084048_19 Aldo/keto reductase family K19265 GO:0003674,GO:0003824,GO:0006081,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0033554,GO:0042180,GO:0042182,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046185,GO:0050896,GO:0051596,GO:0051716,GO:0055114,GO:0071704,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 520.0
SRD3_k127_3084048_2 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.0 1078.0
SRD3_k127_3084048_20 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005164 518.0
SRD3_k127_3084048_21 Fumarylacetoacetate (FAA) hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004478 498.0
SRD3_k127_3084048_22 Dienelactone hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 445.0
SRD3_k127_3084048_23 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 434.0
SRD3_k127_3084048_24 Tryptophan halogenase K14266 - 1.14.19.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001642 442.0
SRD3_k127_3084048_25 Glycosyl hydrolase family 10 K01181 - 3.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 432.0
SRD3_k127_3084048_26 GDSL-like Lipase/Acylhydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 432.0
SRD3_k127_3084048_27 Aldose 1-epimerase K01785 - 5.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009016 415.0
SRD3_k127_3084048_28 Cellulase (glycosyl hydrolase family 5) K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008517 399.0
SRD3_k127_3084048_29 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001115 363.0
SRD3_k127_3084048_3 Belongs to the IlvD Edd family K22186 - 4.2.1.82 0.0 1000.0
SRD3_k127_3084048_30 Gluconolactonase K14274 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 361.0
SRD3_k127_3084048_31 reductase K22185 - 1.1.1.175 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 355.0
SRD3_k127_3084048_32 Oxidoreductase family, C-terminal alpha/beta domain K16044 - 1.1.1.371 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002936 335.0
SRD3_k127_3084048_33 Polysaccharide deacetylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002515 264.0
SRD3_k127_3084048_34 conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000009241 231.0
SRD3_k127_3084048_35 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000003184 215.0
SRD3_k127_3084048_36 Belongs to the 'phage' integrase family - - - 0.0000000000000000000000000000000000009372 143.0
SRD3_k127_3084048_37 - - - - 0.00000000000000000000000000001762 121.0
SRD3_k127_3084048_39 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0000000000005533 69.0
SRD3_k127_3084048_4 PFAM response regulator receiver K02482 - 2.7.13.3 4.981e-289 918.0
SRD3_k127_3084048_42 Sigma-70, region 4 K03088 - - 0.0001791 51.0
SRD3_k127_3084048_43 - - - - 0.0004854 50.0
SRD3_k127_3084048_5 Belongs to the glycosyl hydrolase 67 family K01235 - 3.2.1.139 1.649e-273 858.0
SRD3_k127_3084048_6 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 1.014e-269 850.0
SRD3_k127_3084048_7 Tryptophan halogenase K14266 - 1.14.19.9 2.664e-243 760.0
SRD3_k127_3084048_8 Tryptophan halogenase K14266 - 1.14.19.9 1.608e-232 730.0
SRD3_k127_3084048_9 Belongs to the mandelate racemase muconate lactonizing enzyme family K08323 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005975,GO:0008150,GO:0008152,GO:0008927,GO:0009056,GO:0016052,GO:0016829,GO:0016835,GO:0016836,GO:0043167,GO:0043169,GO:0044238,GO:0046872,GO:0071704,GO:1901575 4.2.1.8 1.587e-231 720.0
SRD3_k127_3257660_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1794.0
SRD3_k127_3257660_1 Oxidizes proline to glutamate for use as a carbon and nitrogen source K13821 - 1.2.1.88,1.5.5.2 0.0 1433.0
SRD3_k127_3257660_10 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009247 605.0
SRD3_k127_3257660_11 MacB-like periplasmic core domain K09808 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001456 567.0
SRD3_k127_3257660_12 Phosphotransferase K07102 - 2.7.1.221 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004427 526.0
SRD3_k127_3257660_13 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits (eIF-2Bgamma eIF-2Bepsilon) K00992 - 2.7.7.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001598 380.0
SRD3_k127_3257660_14 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008167 368.0
SRD3_k127_3257660_15 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 320.0
SRD3_k127_3257660_16 ABC transporter K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009587 319.0
SRD3_k127_3257660_17 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002647 296.0
SRD3_k127_3257660_18 short-chain dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008973 264.0
SRD3_k127_3257660_19 - - - - 0.00000000000000000000000000000000000000000000000000000000000000006097 226.0
SRD3_k127_3257660_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1394.0
SRD3_k127_3257660_20 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000005703 214.0
SRD3_k127_3257660_21 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000000005874 187.0
SRD3_k127_3257660_22 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.0000000000000000000000000000000000000001163 160.0
SRD3_k127_3257660_23 Flavinator of succinate dehydrogenase K09159 - - 0.0000000000000000000000000000001722 126.0
SRD3_k127_3257660_24 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000005079 119.0
SRD3_k127_3257660_25 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.000000002078 65.0
SRD3_k127_3257660_26 Alternative locus ID - - - 0.0001485 45.0
SRD3_k127_3257660_3 Belongs to the helicase family. UvrD subfamily K16898 - 3.6.4.12 0.0 1119.0
SRD3_k127_3257660_4 helicase K16899 - 3.6.4.12 0.0 1073.0
SRD3_k127_3257660_5 ATP-dependent DNA helicase RecG K03655 - 3.6.4.12 0.0 1039.0
SRD3_k127_3257660_6 Histidine kinase - - - 1.931e-283 891.0
SRD3_k127_3257660_7 receptor - - - 2.339e-260 838.0
SRD3_k127_3257660_8 Protein of unknown function (DUF1343) - - - 3.141e-217 678.0
SRD3_k127_3257660_9 methyl-accepting chemotaxis protein K03406 - - 1.026e-214 675.0
SRD3_k127_3427072_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.5e-323 993.0
SRD3_k127_3427072_1 Belongs to the methyltransferase superfamily K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009821 485.0
SRD3_k127_3427072_10 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001527 304.0
SRD3_k127_3427072_11 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.00000000000000000000000000000000000000000000000000000000000000000009042 238.0
SRD3_k127_3427072_12 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.000000000000000000000000000000000000000000000000000000000000002139 222.0
SRD3_k127_3427072_13 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K03767 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000004596 211.0
SRD3_k127_3427072_14 Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I K02258 - - 0.00000000000000000000000000000000000000000000000000001937 195.0
SRD3_k127_3427072_15 SURF1-like protein K14998 - - 0.00000000000000000000000000000000000000000000000009948 184.0
SRD3_k127_3427072_16 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.00000000000000000000000000000000000000000000002764 178.0
SRD3_k127_3427072_17 Protein of unknown function (DUF4242) - - - 0.000000000000000000000000000000000000000000006058 165.0
SRD3_k127_3427072_18 PFAM Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000002323 161.0
SRD3_k127_3427072_19 Protein of unknown function (DUF983) - - - 0.00000000000000000000000000000000000007046 149.0
SRD3_k127_3427072_2 Heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 462.0
SRD3_k127_3427072_20 protein conserved in bacteria - - - 0.00000000000000000000000000000000001869 139.0
SRD3_k127_3427072_21 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000004882 113.0
SRD3_k127_3427072_22 Peptidyl-prolyl cis-trans K03772 - 5.2.1.8 0.00000000000000000286 91.0
SRD3_k127_3427072_23 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.0000000000009374 68.0
SRD3_k127_3427072_24 Protein of unknown function (DUF1778) - - - 0.000000000001521 71.0
SRD3_k127_3427072_3 PFAM peptidase M16 domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 443.0
SRD3_k127_3427072_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 422.0
SRD3_k127_3427072_5 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 - 2.6.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 403.0
SRD3_k127_3427072_6 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002578 404.0
SRD3_k127_3427072_7 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 394.0
SRD3_k127_3427072_8 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 382.0
SRD3_k127_3427072_9 Adenylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007104 356.0
SRD3_k127_3446310_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 1.296e-276 860.0
SRD3_k127_3446310_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 5.498e-227 719.0
SRD3_k127_3446310_10 Cell wall formation K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000146 496.0
SRD3_k127_3446310_11 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005877 478.0
SRD3_k127_3446310_12 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005807 459.0
SRD3_k127_3446310_13 beta-N-acetylhexosaminidase K01207 - 3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006886 414.0
SRD3_k127_3446310_14 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 401.0
SRD3_k127_3446310_15 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004408 396.0
SRD3_k127_3446310_16 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006724 346.0
SRD3_k127_3446310_17 Cell division protein FtsQ K03589 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003621 317.0
SRD3_k127_3446310_18 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 286.0
SRD3_k127_3446310_19 Sporulation related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001562 254.0
SRD3_k127_3446310_2 peptidase S10 serine carboxypeptidase - - - 1.082e-215 681.0
SRD3_k127_3446310_20 Sporulation related domain - - - 0.000000000000000000000000000000000000000000000000000000000006236 220.0
SRD3_k127_3446310_21 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000002693 131.0
SRD3_k127_3446310_22 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.0000000000000000000000000000008343 124.0
SRD3_k127_3446310_23 protein secretion K03116 - - 0.000000000000000007216 86.0
SRD3_k127_3446310_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 1.805e-213 672.0
SRD3_k127_3446310_4 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000299 592.0
SRD3_k127_3446310_5 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003926 577.0
SRD3_k127_3446310_6 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005053 563.0
SRD3_k127_3446310_7 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008028 546.0
SRD3_k127_3446310_8 dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000866 539.0
SRD3_k127_3446310_9 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006273 518.0
SRD3_k127_3646205_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1808.0
SRD3_k127_3646205_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1427.0
SRD3_k127_3646205_10 - K18546 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 379.0
SRD3_k127_3646205_11 Glycosyl hydrolases family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008755 347.0
SRD3_k127_3646205_12 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006577 319.0
SRD3_k127_3646205_13 SelR domain K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000005121 255.0
SRD3_k127_3646205_14 methyl-accepting chemotaxis protein K03406 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002373 254.0
SRD3_k127_3646205_15 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001798 252.0
SRD3_k127_3646205_16 Trypsin-like peptidase domain K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000009357 254.0
SRD3_k127_3646205_17 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000643 240.0
SRD3_k127_3646205_18 membrane protein (homolog of Drosophila rhomboid) - - - 0.000000000000000000000000000000000000000000000000000000000000000001472 233.0
SRD3_k127_3646205_19 Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000000000002625 208.0
SRD3_k127_3646205_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 3.121e-277 868.0
SRD3_k127_3646205_20 Protein required for attachment to host cells - - - 0.00000000000000000000000000000000000000000000000000000001322 203.0
SRD3_k127_3646205_21 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.00000000000000000000000000000000000000000000000000000001687 202.0
SRD3_k127_3646205_22 Acetyltransferase (GNAT) domain K03823 - 2.3.1.183 0.00000000000000000000000000000000000000000000000000000011 200.0
SRD3_k127_3646205_23 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000000000000000000000000144 198.0
SRD3_k127_3646205_24 Pfam Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000000002289 196.0
SRD3_k127_3646205_25 - K03832 - - 0.00000000000000000000000000000000000000000001951 170.0
SRD3_k127_3646205_26 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000007283 150.0
SRD3_k127_3646205_27 Septum formation initiator - - - 0.0000000000000000000000000000001947 127.0
SRD3_k127_3646205_28 Domain of unknown function (DUF4170) - - - 0.000000000000000000000000000005384 120.0
SRD3_k127_3646205_29 - - - - 0.00000000000000000000000000000832 122.0
SRD3_k127_3646205_3 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 3.352e-243 776.0
SRD3_k127_3646205_30 ergosterol biosynthetic process K02291 - 2.5.1.32,2.5.1.99 0.000000000000000000000000002273 121.0
SRD3_k127_3646205_31 - - - - 0.000000000000000000000000009302 118.0
SRD3_k127_3646205_32 Cold-shock protein K03704 - - 0.00000000000000000000000002258 110.0
SRD3_k127_3646205_33 PspC domain protein - - - 0.00000000000000003675 85.0
SRD3_k127_3646205_34 - - - - 0.000000000000001326 81.0
SRD3_k127_3646205_35 - - - - 0.00000000132 63.0
SRD3_k127_3646205_36 - - - - 0.000000008694 59.0
SRD3_k127_3646205_37 Putative Actinobacterial Holin-X, holin superfamily III - - - 0.0000000184 60.0
SRD3_k127_3646205_38 Protein of unknown function (DUF3618) - - - 0.0000001668 57.0
SRD3_k127_3646205_39 Protein of unknown function (DUF3761) - - - 0.000002547 58.0
SRD3_k127_3646205_4 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 2.366e-229 715.0
SRD3_k127_3646205_5 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 3.166e-228 715.0
SRD3_k127_3646205_6 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 6.636e-227 718.0
SRD3_k127_3646205_7 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 1.051e-211 666.0
SRD3_k127_3646205_8 Belongs to the CarA family K01956 - 6.3.5.5 2.89e-197 620.0
SRD3_k127_3646205_9 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000426 569.0
SRD3_k127_372526_0 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 521.0
SRD3_k127_372526_1 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009579 242.0
SRD3_k127_372526_2 Ribosomal L32p protein family K02911 - - 0.0000000000000000000000000005342 116.0
SRD3_k127_3895567_0 Sortilin, neurotensin receptor 3, - - - 0.0 1403.0
SRD3_k127_3895567_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1275.0
SRD3_k127_3895567_10 Beta-L-arabinofuranosidase, GH127 K09955 - - 3.226e-266 835.0
SRD3_k127_3895567_100 conserved small protein - - - 0.00000000000003256 73.0
SRD3_k127_3895567_101 - - - - 0.000000000001562 70.0
SRD3_k127_3895567_102 Domain of unknown function (DUF4402) - - - 0.0000000009086 66.0
SRD3_k127_3895567_103 EF-hand, calcium binding motif - - - 0.0000000009617 66.0
SRD3_k127_3895567_105 Putative prokaryotic signal transducing protein - - - 0.00000001887 58.0
SRD3_k127_3895567_107 - - - - 0.000007312 51.0
SRD3_k127_3895567_108 PilZ domain - - - 0.000007687 54.0
SRD3_k127_3895567_109 Gamma-glutamyl cyclotransferase, AIG2-like - - - 0.000009705 49.0
SRD3_k127_3895567_11 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 6.485e-264 819.0
SRD3_k127_3895567_110 - - - - 0.0000682 52.0
SRD3_k127_3895567_111 - - - - 0.000336 52.0
SRD3_k127_3895567_12 Subtilase family - - - 6.109e-263 835.0
SRD3_k127_3895567_13 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.55e-252 786.0
SRD3_k127_3895567_14 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase K06147 - - 1.477e-251 788.0
SRD3_k127_3895567_15 Chloride channel protein - - - 8.516e-250 783.0
SRD3_k127_3895567_16 peptidase U62, modulator of DNA gyrase K03568 - - 2.78e-246 766.0
SRD3_k127_3895567_17 Heparinase - - - 5.326e-228 720.0
SRD3_k127_3895567_18 oligosaccharyl transferase activity - - - 2.984e-221 701.0
SRD3_k127_3895567_19 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 1.167e-217 679.0
SRD3_k127_3895567_2 helicase K17675 - 3.6.4.13 0.0 1202.0
SRD3_k127_3895567_20 Aldehyde dehydrogenase family K00135 - 1.2.1.16,1.2.1.20,1.2.1.79 3.759e-202 642.0
SRD3_k127_3895567_21 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 604.0
SRD3_k127_3895567_22 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 606.0
SRD3_k127_3895567_23 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007562 591.0
SRD3_k127_3895567_24 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 567.0
SRD3_k127_3895567_25 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009353 566.0
SRD3_k127_3895567_26 Glycosyl transferase, family 2 K01002,K20534 - 2.7.8.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008926 530.0
SRD3_k127_3895567_27 Glycosyl transferase family 2 K20534 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009558 510.0
SRD3_k127_3895567_28 synthase K00574 - 2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004474 500.0
SRD3_k127_3895567_29 sulfate adenylyltransferase K00957 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 499.0
SRD3_k127_3895567_3 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1120.0
SRD3_k127_3895567_30 Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 family K03185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 486.0
SRD3_k127_3895567_31 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 481.0
SRD3_k127_3895567_32 ABC-type multidrug transport system, ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005215 472.0
SRD3_k127_3895567_33 Nitrite reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 467.0
SRD3_k127_3895567_34 exodeoxyribonuclease III K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 454.0
SRD3_k127_3895567_35 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003255 443.0
SRD3_k127_3895567_36 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002577 441.0
SRD3_k127_3895567_37 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 441.0
SRD3_k127_3895567_38 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001909 430.0
SRD3_k127_3895567_39 beta-lactamase K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 432.0
SRD3_k127_3895567_4 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955,K00956 - 2.7.1.25,2.7.7.4 5.471e-310 963.0
SRD3_k127_3895567_40 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 417.0
SRD3_k127_3895567_41 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002918 410.0
SRD3_k127_3895567_42 ABC-type transport system involved in Fe-S cluster assembly, ATPase component K09013 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 399.0
SRD3_k127_3895567_43 Histidine-specific methyltransferase, SAM-dependent - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003933 400.0
SRD3_k127_3895567_44 Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate K01497 - 3.5.4.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 381.0
SRD3_k127_3895567_45 HNH endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 361.0
SRD3_k127_3895567_46 Belongs to the class-I aminoacyl-tRNA synthetase family K01894 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002212 364.0
SRD3_k127_3895567_47 Thioredoxin K05838 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 365.0
SRD3_k127_3895567_48 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 351.0
SRD3_k127_3895567_49 Hydrolase K07025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009633 338.0
SRD3_k127_3895567_5 DNA segregation ATPase FtsK SpoIIIE K03466 - - 2.7e-300 940.0
SRD3_k127_3895567_50 Putative transmembrane protein (Alph_Pro_TM) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004128 340.0
SRD3_k127_3895567_51 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005913 332.0
SRD3_k127_3895567_52 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 321.0
SRD3_k127_3895567_53 gag-polyprotein putative aspartyl protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 319.0
SRD3_k127_3895567_54 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009217 315.0
SRD3_k127_3895567_55 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009436 313.0
SRD3_k127_3895567_56 transferase activity, transferring acyl groups other than amino-acyl groups K12990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004467 299.0
SRD3_k127_3895567_57 Prolyl 4-hydroxylase alpha subunit homologues. K00472 - 1.14.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 289.0
SRD3_k127_3895567_58 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007849 293.0
SRD3_k127_3895567_59 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001262 283.0
SRD3_k127_3895567_6 Domain of unknown function DUF87 K06915 - - 1.131e-298 925.0
SRD3_k127_3895567_60 UPF0056 membrane protein K05595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002953 271.0
SRD3_k127_3895567_61 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004348 267.0
SRD3_k127_3895567_62 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001572 263.0
SRD3_k127_3895567_63 adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000002858 256.0
SRD3_k127_3895567_64 ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005039 256.0
SRD3_k127_3895567_65 FeS assembly SUF system protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002131 249.0
SRD3_k127_3895567_66 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000389 246.0
SRD3_k127_3895567_67 to the N-terminal domain of Lon protease K07157 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005856 254.0
SRD3_k127_3895567_68 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001789 250.0
SRD3_k127_3895567_69 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.00000000000000000000000000000000000000000000000000000000000000000152 227.0
SRD3_k127_3895567_7 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 - - 1.968e-286 884.0
SRD3_k127_3895567_70 Belongs to the HesB IscA family K13628 - - 0.0000000000000000000000000000000000000000000000000000000000002416 213.0
SRD3_k127_3895567_71 - - - - 0.00000000000000000000000000000000000000000000000000000000008102 214.0
SRD3_k127_3895567_72 Membrane - - - 0.000000000000000000000000000000000000000000000000000000002765 222.0
SRD3_k127_3895567_73 MltA-interacting protein MipA - - - 0.000000000000000000000000000000000000000000000000000000008737 209.0
SRD3_k127_3895567_74 Peroxiredoxin - - - 0.0000000000000000000000000000000000000000000000000000000216 201.0
SRD3_k127_3895567_75 Domain of unknown function (DUF3576) - - - 0.00000000000000000000000000000000000000000000000000000004079 200.0
SRD3_k127_3895567_76 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000002117 198.0
SRD3_k127_3895567_77 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000002197 193.0
SRD3_k127_3895567_78 Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) - - - 0.000000000000000000000000000000000000000000000000007414 191.0
SRD3_k127_3895567_79 - - - - 0.000000000000000000000000000000000000000000000000009868 187.0
SRD3_k127_3895567_8 Peptidase family M3 K01284 - 3.4.15.5 4.217e-286 897.0
SRD3_k127_3895567_80 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000867 187.0
SRD3_k127_3895567_81 membrane - - - 0.00000000000000000000000000000000000000000000000009994 188.0
SRD3_k127_3895567_82 Protein of unknown function (DUF1810) - - - 0.00000000000000000000000000000000000000000000001528 175.0
SRD3_k127_3895567_83 GtrA-like protein - - - 0.000000000000000000000000000000000000000000001397 168.0
SRD3_k127_3895567_84 Redoxin - - - 0.0000000000000000000000000000000000000000007853 171.0
SRD3_k127_3895567_85 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000001768 152.0
SRD3_k127_3895567_86 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 0.0000000000000000000000000000001871 131.0
SRD3_k127_3895567_87 invasion associated locus B - - - 0.000000000000000000000000000008137 125.0
SRD3_k127_3895567_88 protein conserved in bacteria - - - 0.00000000000000000000000000007125 121.0
SRD3_k127_3895567_89 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.000000000000000000000000004096 115.0
SRD3_k127_3895567_9 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 8.701e-285 886.0
SRD3_k127_3895567_90 - - - - 0.000000000000000000000006721 105.0
SRD3_k127_3895567_91 protein conserved in bacteria - - - 0.00000000000000000000005944 99.0
SRD3_k127_3895567_92 integral membrane protein K02221 - - 0.0000000000000000000001019 100.0
SRD3_k127_3895567_93 Methyltransferase domain - - - 0.000000000000000000001113 108.0
SRD3_k127_3895567_94 Thiamine monophosphate synthase K00788 - 2.5.1.3 0.0000000000000000001799 94.0
SRD3_k127_3895567_95 PAS domain - - - 0.0000000000000000002312 102.0
SRD3_k127_3895567_96 - - - - 0.00000000000000000113 95.0
SRD3_k127_3895567_97 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.000000000000000001159 91.0
SRD3_k127_3895567_98 EF-hand, calcium binding motif - - - 0.000000000000002028 87.0
SRD3_k127_3896020_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1696.0
SRD3_k127_3896020_1 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1229.0
SRD3_k127_3896020_10 Histidine kinase - - - 7.643e-282 891.0
SRD3_k127_3896020_11 synthetase K01897 - 6.2.1.3 1.428e-270 843.0
SRD3_k127_3896020_12 gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 1.772e-232 731.0
SRD3_k127_3896020_13 phosphomannomutase K01840 - 5.4.2.8 3.583e-231 723.0
SRD3_k127_3896020_14 ABC-type transport system involved in Fe-S cluster assembly, permease component K09014 - - 1.685e-217 679.0
SRD3_k127_3896020_15 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 2.755e-212 669.0
SRD3_k127_3896020_16 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 7.604e-204 644.0
SRD3_k127_3896020_17 Tryptophan halogenase K14266 - 1.14.19.9 1.438e-201 640.0
SRD3_k127_3896020_18 UDP-galactopyranose mutase K01854 - 5.4.99.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 617.0
SRD3_k127_3896020_19 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 592.0
SRD3_k127_3896020_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 0.0 1201.0
SRD3_k127_3896020_20 exonuclease of the beta-lactamase fold involved in RNA processing K07577 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006967 537.0
SRD3_k127_3896020_21 UDP-galactopyranose mutase K01854 - 5.4.99.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 493.0
SRD3_k127_3896020_22 Protein of unknown function (DUF3089) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 491.0
SRD3_k127_3896020_23 aldo keto reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 466.0
SRD3_k127_3896020_24 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 450.0
SRD3_k127_3896020_25 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005571 444.0
SRD3_k127_3896020_26 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 412.0
SRD3_k127_3896020_27 transcriptional regulatory protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 395.0
SRD3_k127_3896020_28 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101 397.0
SRD3_k127_3896020_29 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006542 399.0
SRD3_k127_3896020_3 helicase K03724 - - 0.0 1196.0
SRD3_k127_3896020_30 Aspartyl/Asparaginyl beta-hydroxylase K12979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001192 396.0
SRD3_k127_3896020_31 protein involved in formation of curli polymers - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035 335.0
SRD3_k127_3896020_32 Esterase PHB depolymerase K03932 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005286 327.0
SRD3_k127_3896020_33 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 - 6.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005637 324.0
SRD3_k127_3896020_34 Protein of unknown function (DUF541) K09797 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 323.0
SRD3_k127_3896020_35 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001322 299.0
SRD3_k127_3896020_36 Alpha beta hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 294.0
SRD3_k127_3896020_37 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000837 291.0
SRD3_k127_3896020_38 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000399 245.0
SRD3_k127_3896020_39 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000000000000000002908 241.0
SRD3_k127_3896020_4 Malic enzyme K00029 - 1.1.1.40 0.0 1187.0
SRD3_k127_3896020_40 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000009038 231.0
SRD3_k127_3896020_41 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000713 233.0
SRD3_k127_3896020_42 - - - - 0.0000000000000000000000000000000000000000000000000000000001951 216.0
SRD3_k127_3896020_43 thioesterase K07107 - - 0.0000000000000000000000000000000000000000000000000000003709 197.0
SRD3_k127_3896020_44 Glutathione-dependent formaldehyde-activating enzyme - - - 0.00000000000000000000000000000000000000000000000005483 181.0
SRD3_k127_3896020_45 response to oxidative stress K04063 - - 0.00000000000000000000000000000000000000000000000009971 182.0
SRD3_k127_3896020_46 3' exoribonuclease, RNase T-like - - - 0.0000000000000000000000000000000000000000000000005967 179.0
SRD3_k127_3896020_47 transcriptional - - - 0.0000000000000000000000000000000000000000000006722 172.0
SRD3_k127_3896020_48 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000007755 168.0
SRD3_k127_3896020_49 FOG TPR repeat, SEL1 subfamily K07126 - - 0.00000000000000000000000000000000000000001381 156.0
SRD3_k127_3896020_5 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 0.0 1076.0
SRD3_k127_3896020_50 - - - - 0.0000000000000000000000000000000000003209 149.0
SRD3_k127_3896020_51 - - - - 0.000000000000000000000000000000000001079 149.0
SRD3_k127_3896020_52 Putative zinc-finger - - - 0.0000000000000000000000000000000001057 144.0
SRD3_k127_3896020_53 Belongs to the UPF0335 family - - - 0.00000000000000000000000000000001516 128.0
SRD3_k127_3896020_54 - - - - 0.00000000000000000000000000000002087 132.0
SRD3_k127_3896020_55 - - - - 0.000000000000000000000000000001818 125.0
SRD3_k127_3896020_57 Protein of unknown function (DUF2892) - - - 0.0000000000000000000000000007405 114.0
SRD3_k127_3896020_58 COG0457 FOG TPR repeat - - - 0.000000000000000000000006513 111.0
SRD3_k127_3896020_59 Transcriptional regulator K07729 - - 0.000000000000000000000008777 108.0
SRD3_k127_3896020_6 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00990 - 2.7.7.59 0.0 1070.0
SRD3_k127_3896020_60 Helix-turn-helix XRE-family like proteins K07729 - - 0.0000000000000000002121 90.0
SRD3_k127_3896020_61 - - - - 0.00000000000000001084 89.0
SRD3_k127_3896020_62 - - - - 0.00000000000000006648 85.0
SRD3_k127_3896020_63 Belongs to the ompA family K03640 - - 0.000000000000002713 82.0
SRD3_k127_3896020_65 HWE histidine kinase - - - 0.00000000003061 69.0
SRD3_k127_3896020_66 - - - - 0.00000000007618 68.0
SRD3_k127_3896020_68 - - - - 0.000000005042 64.0
SRD3_k127_3896020_7 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1050.0
SRD3_k127_3896020_8 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 0.0 1022.0
SRD3_k127_3896020_9 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 2.151e-294 909.0
SRD3_k127_3922222_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0 1078.0
SRD3_k127_3922222_1 amino acid peptide transporter K03305 - - 4.765e-276 861.0
SRD3_k127_3922222_10 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004333 582.0
SRD3_k127_3922222_11 NAD(P) transhydrogenase subunit alpha K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 532.0
SRD3_k127_3922222_12 N-carbamoylputrescine amidase K12251 - 3.5.1.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007773 505.0
SRD3_k127_3922222_13 Capsule polysaccharide K07266 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 496.0
SRD3_k127_3922222_14 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009325 466.0
SRD3_k127_3922222_15 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214 465.0
SRD3_k127_3922222_16 Polysaccharide biosynthesis protein K07265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008466 460.0
SRD3_k127_3922222_17 Aminotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002626 451.0
SRD3_k127_3922222_18 dihydropteroate synthase K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 443.0
SRD3_k127_3922222_19 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000286 429.0
SRD3_k127_3922222_2 protein involved in exopolysaccharide biosynthesis - - - 1.887e-245 779.0
SRD3_k127_3922222_20 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005369 426.0
SRD3_k127_3922222_21 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 401.0
SRD3_k127_3922222_22 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 377.0
SRD3_k127_3922222_23 CHASE2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000208 355.0
SRD3_k127_3922222_24 aspartate racemase K01779 - 5.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 325.0
SRD3_k127_3922222_26 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002295 315.0
SRD3_k127_3922222_27 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001072 318.0
SRD3_k127_3922222_28 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075 308.0
SRD3_k127_3922222_29 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 296.0
SRD3_k127_3922222_3 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 1.054e-239 748.0
SRD3_k127_3922222_30 Uracil-DNA glycosylase K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 295.0
SRD3_k127_3922222_31 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004042 294.0
SRD3_k127_3922222_32 Involved in DNA repair and RecF pathway recombination K03584 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003563 296.0
SRD3_k127_3922222_33 polysaccharide export K01991 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002994 283.0
SRD3_k127_3922222_34 COG0639 Diadenosine tetraphosphatase and related serine threonine protein phosphatases K07313 - 3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009377 282.0
SRD3_k127_3922222_35 Glutamine amidotransferase domain K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001913 289.0
SRD3_k127_3922222_36 Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose K00067 - 1.1.1.133 0.00000000000000000000000000000000000000000000000000000000000000000217 229.0
SRD3_k127_3922222_37 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion - - - 0.0000000000000000000000000000000000000000000000000000000000000002742 232.0
SRD3_k127_3922222_38 nitroreductase - - - 0.000000000000000000000000000000000000000000000000000000000000009009 222.0
SRD3_k127_3922222_39 - - - - 0.0000000000000000000000000000000000000000000000000000000000003811 220.0
SRD3_k127_3922222_4 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 2.26e-224 701.0
SRD3_k127_3922222_40 NnrU protein - - - 0.0000000000000000000000000000000000000000000000000000000000009856 217.0
SRD3_k127_3922222_41 Prolyl-tRNA synthetase - - - 0.000000000000000000000000000000000000000000000000000003217 198.0
SRD3_k127_3922222_42 protein affecting Mg2 Co2 transport K06195 - - 0.0000000000000000000000000000000000000000000000000000308 191.0
SRD3_k127_3922222_43 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000000000000001555 188.0
SRD3_k127_3922222_44 Uncharacterised nucleotidyltransferase - - - 0.000000000000000000000000000000000000000000000000004671 195.0
SRD3_k127_3922222_45 Transcriptional regulator K07979 - - 0.000000000000000000000000000000000000000000000008115 174.0
SRD3_k127_3922222_46 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 - 2.7.6.3 0.0000000000000000000000000000000000000000000002702 171.0
SRD3_k127_3922222_47 nad(P) transhydrogenase subunit alpha K00324 - 1.6.1.2 0.000000000000000000000000000000000000000001445 158.0
SRD3_k127_3922222_48 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000008411 157.0
SRD3_k127_3922222_5 belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 8.701e-207 653.0
SRD3_k127_3922222_51 Putative zinc- or iron-chelating domain - - - 0.000000000000002123 86.0
SRD3_k127_3922222_52 Type IV pilus biogenesis stability protein PilW - - - 0.000000000002264 79.0
SRD3_k127_3922222_54 Uncharacterised nucleotidyltransferase - - - 0.0004055 49.0
SRD3_k127_3922222_6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 6.355e-202 639.0
SRD3_k127_3922222_7 Belongs to the N(4) N(6)-methyltransferase family K13581 - 2.1.1.72 1.871e-194 611.0
SRD3_k127_3922222_8 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 625.0
SRD3_k127_3922222_9 Putative diguanylate phosphodiesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009226 602.0
SRD3_k127_3924074_0 Helicase K03722 - 3.6.4.12 0.0 1302.0
SRD3_k127_3924074_1 Belongs to the AAA ATPase family K13525 - - 0.0 1270.0
SRD3_k127_3924074_10 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide 5, 6-dimethylbenzimidazole phosphoribosyltransferase) K09883 - 6.6.1.2 7.269e-260 812.0
SRD3_k127_3924074_100 - - - - 0.00000000000000000000000000000000000000000000000000000000000000009742 230.0
SRD3_k127_3924074_101 ribonuclease E activity - - - 0.0000000000000000000000000000000000000000000000000000000000000002899 231.0
SRD3_k127_3924074_102 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000001268 224.0
SRD3_k127_3924074_103 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - - - 0.000000000000000000000000000000000000000000000000000000000000002809 233.0
SRD3_k127_3924074_104 Lactoylglutathione lyase K07032 - - 0.0000000000000000000000000000000000000000000000000000000000002781 214.0
SRD3_k127_3924074_105 Domain of unknown function (DUF4142) K08995 - - 0.000000000000000000000000000000000000000000000000000000000001982 214.0
SRD3_k127_3924074_106 AntiSigma factor - - - 0.000000000000000000000000000000000000000000000000000000000005075 214.0
SRD3_k127_3924074_107 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000000000000000000000000000000000000001064 218.0
SRD3_k127_3924074_108 bacterial OsmY and nodulation domain - - - 0.00000000000000000000000000000000000000000000000000000000003456 214.0
SRD3_k127_3924074_109 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000003554 200.0
SRD3_k127_3924074_11 protein conserved in bacteria - - - 5.498e-256 801.0
SRD3_k127_3924074_110 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000001187 197.0
SRD3_k127_3924074_111 Transposase IS116/IS110/IS902 family K07486 - - 0.0000000000000000000000000000000000000000000000000000002356 196.0
SRD3_k127_3924074_112 Glutathione-dependent formaldehyde-activating - - - 0.000000000000000000000000000000000000000000000000000003418 196.0
SRD3_k127_3924074_113 - - - - 0.000000000000000000000000000000000000000000000000000219 194.0
SRD3_k127_3924074_115 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000002315 194.0
SRD3_k127_3924074_116 - - - - 0.00000000000000000000000000000000000000000000000449 181.0
SRD3_k127_3924074_117 Protein of unknown function (DUF1489) - - - 0.0000000000000000000000000000000000000000000003448 169.0
SRD3_k127_3924074_119 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000000000000000000000000002373 166.0
SRD3_k127_3924074_12 hopanoid biosynthesis associated radical SAM protein HpnJ - - - 6.23e-247 771.0
SRD3_k127_3924074_120 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000000000000000000000000003514 164.0
SRD3_k127_3924074_121 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000008578 181.0
SRD3_k127_3924074_122 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.00000000000000000000000000000000000000000001164 165.0
SRD3_k127_3924074_123 - - - - 0.00000000000000000000000000000000000000000008811 179.0
SRD3_k127_3924074_124 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000001246 172.0
SRD3_k127_3924074_125 NADH ubiquinone oxidoreductase 41 kD complex I subunit - - - 0.0000000000000000000000000000000000000000002336 163.0
SRD3_k127_3924074_126 phosphohistidine phosphatase K08296 - - 0.000000000000000000000000000000000000001609 153.0
SRD3_k127_3924074_127 Putative zinc-finger - - - 0.0000000000000000000000000000000000005998 147.0
SRD3_k127_3924074_128 Protein required for attachment to host cells - - - 0.0000000000000000000000000000000000008473 143.0
SRD3_k127_3924074_129 Belongs to the ompA family - - - 0.000000000000000000000000000000000006867 145.0
SRD3_k127_3924074_13 Beta-lactamase - - - 2.695e-233 739.0
SRD3_k127_3924074_130 Bacterial protein of unknown function (Gcw_chp) - - - 0.000000000000000000000000000000000008875 147.0
SRD3_k127_3924074_131 Nickel/cobalt transporter regulator - - - 0.000000000000000000000000000000002796 142.0
SRD3_k127_3924074_132 transcriptional - - - 0.00000000000000000000000000000003309 133.0
SRD3_k127_3924074_133 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000002084 132.0
SRD3_k127_3924074_134 Pfam:Pyridox_oxidase - - - 0.0000000000000000000000000000009768 128.0
SRD3_k127_3924074_135 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.000000000000000000000000000002189 121.0
SRD3_k127_3924074_137 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000004207 125.0
SRD3_k127_3924074_138 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000438 123.0
SRD3_k127_3924074_139 - - - - 0.00000000000000000000000000003067 119.0
SRD3_k127_3924074_14 - - - - 5.599e-225 712.0
SRD3_k127_3924074_140 zinc-finger binding domain of transposase IS66 - - - 0.0000000000000000000000000001198 118.0
SRD3_k127_3924074_141 Belongs to the BolA IbaG family K05527 - - 0.0000000000000000000000000001738 119.0
SRD3_k127_3924074_142 - - - - 0.0000000000000000000000000006562 119.0
SRD3_k127_3924074_143 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000119 130.0
SRD3_k127_3924074_144 Pfam:Pyridox_oxidase - - - 0.000000000000000000000000007834 114.0
SRD3_k127_3924074_145 Putative auto-transporter adhesin, head GIN domain - - - 0.00000000000000000000000001704 118.0
SRD3_k127_3924074_146 CBS domain - - - 0.00000000000000000000000003335 116.0
SRD3_k127_3924074_147 relative of glutathione S-transferase, MAPEG superfamily K07136 - - 0.000000000000000000000000188 110.0
SRD3_k127_3924074_148 Uncharacterized protein conserved in bacteria (DUF2093) - - - 0.0000000000000000000000007173 104.0
SRD3_k127_3924074_149 - - - - 0.00000000000000000000000165 117.0
SRD3_k127_3924074_15 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 2.26e-215 673.0
SRD3_k127_3924074_150 component I K01665,K03342 - 2.6.1.85,4.1.3.38 0.0000000000000000000001695 98.0
SRD3_k127_3924074_152 PFAM blue (type 1) copper domain protein - - - 0.000000000000000000001659 97.0
SRD3_k127_3924074_153 Low affinity iron permease - - - 0.000000000000000000004498 98.0
SRD3_k127_3924074_154 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.0000000000000000001694 90.0
SRD3_k127_3924074_155 - - - - 0.0000000000000000484 95.0
SRD3_k127_3924074_157 - - - - 0.000000000000002414 80.0
SRD3_k127_3924074_158 Flp pilus assembly protein, pilin Flp K02651 - - 0.000000000000003525 77.0
SRD3_k127_3924074_16 protein involved in exopolysaccharide biosynthesis K16554 - - 3.294e-202 657.0
SRD3_k127_3924074_160 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.00000000003265 77.0
SRD3_k127_3924074_161 - - - - 0.000000001971 67.0
SRD3_k127_3924074_162 Transposase - - - 0.000000005276 67.0
SRD3_k127_3924074_163 biosynthesis protein K03328 - - 0.00000003532 66.0
SRD3_k127_3924074_164 Resolvase - - - 0.0000006938 56.0
SRD3_k127_3924074_165 Putative auto-transporter adhesin, head GIN domain - - - 0.0000008301 60.0
SRD3_k127_3924074_166 - - - - 0.000002557 59.0
SRD3_k127_3924074_167 Response regulator receiver - - - 0.0000249 54.0
SRD3_k127_3924074_168 PEP-CTERM motif - - - 0.0002198 51.0
SRD3_k127_3924074_169 Protein of unknwon function (DUF3008) - - - 0.0007219 46.0
SRD3_k127_3924074_17 COG1253 Hemolysins and related proteins containing CBS domains K03699 - - 6.425e-197 623.0
SRD3_k127_3924074_18 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 7.691e-196 626.0
SRD3_k127_3924074_19 Metallo-beta-lactamase superfamily domain K07576 - - 5.748e-195 619.0
SRD3_k127_3924074_2 ERAP1-like C-terminal domain - - - 0.0 1178.0
SRD3_k127_3924074_20 Polysaccharide biosynthesis protein K13013 GO:0008150,GO:0043900,GO:0043902,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:1900190,GO:1900192 - 9.898e-194 628.0
SRD3_k127_3924074_21 Acts as a magnesium transporter K06213 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 616.0
SRD3_k127_3924074_22 Aerobic cobaltochelatase subunit CobS K09882 - 6.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 605.0
SRD3_k127_3924074_23 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005246 598.0
SRD3_k127_3924074_24 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004027 588.0
SRD3_k127_3924074_25 conserved protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008862 581.0
SRD3_k127_3924074_26 Thymidine phosphorylase K00758 - 2.4.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 570.0
SRD3_k127_3924074_27 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002576 559.0
SRD3_k127_3924074_28 amino acid peptide transporter K03305 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 538.0
SRD3_k127_3924074_29 Zn-dependent dipeptidase, microsomal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006264 538.0
SRD3_k127_3924074_3 NADH flavin oxidoreductase NADH oxidase K09461 - 1.14.13.40 0.0 1137.0
SRD3_k127_3924074_30 Major Facilitator Superfamily K02429 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009126 525.0
SRD3_k127_3924074_31 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008553 516.0
SRD3_k127_3924074_32 ABC-type sugar transport system periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000444 510.0
SRD3_k127_3924074_33 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791,K13019 - 5.1.3.14,5.1.3.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003669 496.0
SRD3_k127_3924074_34 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001088 492.0
SRD3_k127_3924074_35 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006874 503.0
SRD3_k127_3924074_36 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 490.0
SRD3_k127_3924074_37 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001828 470.0
SRD3_k127_3924074_38 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 473.0
SRD3_k127_3924074_39 Electron transfer flavoprotein K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 462.0
SRD3_k127_3924074_4 receptor - - - 0.0 1105.0
SRD3_k127_3924074_40 COG1502 Phosphatidylserine phosphatidylglycerophosphate cardiolipi n synthases and related enzymes K06131 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 464.0
SRD3_k127_3924074_41 TOBE domain K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 452.0
SRD3_k127_3924074_42 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 441.0
SRD3_k127_3924074_43 nitrogen fixation sensor protein fixL K14986 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 438.0
SRD3_k127_3924074_44 GDP-mannose 4,6 dehydratase K17716 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007475 427.0
SRD3_k127_3924074_45 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 430.0
SRD3_k127_3924074_46 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 425.0
SRD3_k127_3924074_47 Belongs to the type-B carboxylesterase lipase family K03929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001806 434.0
SRD3_k127_3924074_48 Belongs to the glycosyl hydrolase 43 family K06113 - 3.2.1.99 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001056 423.0
SRD3_k127_3924074_49 N-terminal domain of oxidoreductase K00344 - 1.6.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 417.0
SRD3_k127_3924074_5 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1054.0
SRD3_k127_3924074_50 Transketolase, pyrimidine binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 404.0
SRD3_k127_3924074_51 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 403.0
SRD3_k127_3924074_52 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 406.0
SRD3_k127_3924074_53 Electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 396.0
SRD3_k127_3924074_54 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 387.0
SRD3_k127_3924074_55 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002687 394.0
SRD3_k127_3924074_56 amino acid aldolase or racemase K20757 - 4.3.1.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006515 390.0
SRD3_k127_3924074_57 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 392.0
SRD3_k127_3924074_58 Glycosyl hydrolases family 43 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 388.0
SRD3_k127_3924074_59 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002724 386.0
SRD3_k127_3924074_6 Belongs to the heme-copper respiratory oxidase family K04561 - 1.7.2.5 5.333e-312 975.0
SRD3_k127_3924074_60 RDD family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005948 377.0
SRD3_k127_3924074_61 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 375.0
SRD3_k127_3924074_62 overlaps another CDS with the same product name K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001059 375.0
SRD3_k127_3924074_63 COG0451 Nucleoside-diphosphate-sugar epimerases K19068 - 1.1.1.367 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 371.0
SRD3_k127_3924074_64 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000153 368.0
SRD3_k127_3924074_65 Mandelate racemase muconate lactonizing enzyme K19802 - 5.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003481 360.0
SRD3_k127_3924074_66 protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009712 351.0
SRD3_k127_3924074_67 ICC-like phosphoesterases K06953 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 329.0
SRD3_k127_3924074_68 Transcriptional regulator sugar kinase K00847 - 2.7.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005028 328.0
SRD3_k127_3924074_69 CarD family transcriptional regulator K07736 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004046 313.0
SRD3_k127_3924074_7 Cation transporter/ATPase, N-terminus K01531,K01535 - 3.6.3.2,3.6.3.6 2.13e-289 912.0
SRD3_k127_3924074_70 KR domain K07124 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 314.0
SRD3_k127_3924074_71 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 301.0
SRD3_k127_3924074_72 Belongs to the ribose-phosphate pyrophosphokinase family K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000418 306.0
SRD3_k127_3924074_73 Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 295.0
SRD3_k127_3924074_74 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 296.0
SRD3_k127_3924074_75 Glutathione S-transferase, N-terminal domain K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 292.0
SRD3_k127_3924074_76 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003738 291.0
SRD3_k127_3924074_77 Methyltransferase small domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000475 286.0
SRD3_k127_3924074_78 part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes K14987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004269 277.0
SRD3_k127_3924074_79 enzyme related to lactoylglutathione lyase K06996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000507 286.0
SRD3_k127_3924074_8 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 2.179e-270 842.0
SRD3_k127_3924074_80 HxlR-like helix-turn-helix - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001224 271.0
SRD3_k127_3924074_81 Protein of unknown function (DUF1428) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002355 275.0
SRD3_k127_3924074_82 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000002829 263.0
SRD3_k127_3924074_83 isomerase K01809 - 5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000005616 269.0
SRD3_k127_3924074_84 Serine aminopeptidase, S33 K01055 - 3.1.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000007911 265.0
SRD3_k127_3924074_85 GDSL-like Lipase/Acylhydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002901 263.0
SRD3_k127_3924074_86 molecular chaperone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001454 257.0
SRD3_k127_3924074_87 Sigma-70, region 4 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006389 256.0
SRD3_k127_3924074_88 Bacterial sugar transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006715 259.0
SRD3_k127_3924074_89 ubiE/COQ5 methyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001068 252.0
SRD3_k127_3924074_9 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 3.001e-266 843.0
SRD3_k127_3924074_90 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.0000000000000000000000000000000000000000000000000000000000000000000000227 243.0
SRD3_k127_3924074_91 Cro/C1-type HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003651 244.0
SRD3_k127_3924074_92 O-methyltransferase activity K05303 - - 0.0000000000000000000000000000000000000000000000000000000000000000000004051 244.0
SRD3_k127_3924074_93 polysaccharide export K01991 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008592 244.0
SRD3_k127_3924074_94 3-demethylubiquinone-9 3-methyltransferase K00568 - 2.1.1.222,2.1.1.64 0.000000000000000000000000000000000000000000000000000000000000000000001027 240.0
SRD3_k127_3924074_95 Glutathione S-transferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000008808 240.0
SRD3_k127_3924074_96 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002993 236.0
SRD3_k127_3924074_97 ECF sigma factor K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000009285 234.0
SRD3_k127_3924074_98 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000000000000000000000000000000000000000002331 235.0
SRD3_k127_3924074_99 HWE histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000003053 240.0
SRD3_k127_4074558_0 Polysaccharide deacetylase K22278 - 3.5.1.104 0.0 1358.0
SRD3_k127_4074558_1 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0 1075.0
SRD3_k127_4074558_10 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001349 561.0
SRD3_k127_4074558_11 enoyl-CoA hydratase K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 517.0
SRD3_k127_4074558_12 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005492 516.0
SRD3_k127_4074558_13 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001298 508.0
SRD3_k127_4074558_14 Chalcone and stilbene synthases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004832 457.0
SRD3_k127_4074558_15 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 438.0
SRD3_k127_4074558_16 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009347 416.0
SRD3_k127_4074558_17 Putative peptidoglycan binding domain K21470 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 418.0
SRD3_k127_4074558_18 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 399.0
SRD3_k127_4074558_19 COG1253 Hemolysins and related proteins containing CBS domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005051 394.0
SRD3_k127_4074558_2 Methylmalonate-semialdehyde dehydrogenase K00140 - 1.2.1.18,1.2.1.27 2.777e-290 895.0
SRD3_k127_4074558_20 Belongs to the 3-hydroxyisobutyrate dehydrogenase family K00020 - 1.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 404.0
SRD3_k127_4074558_21 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 373.0
SRD3_k127_4074558_22 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009221 349.0
SRD3_k127_4074558_23 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004126 295.0
SRD3_k127_4074558_24 COG0694 Thioredoxin-like proteins and domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009904 291.0
SRD3_k127_4074558_25 Belongs to the Fur family K03711 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001418 243.0
SRD3_k127_4074558_26 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000001204 228.0
SRD3_k127_4074558_27 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000000000000000000000000000000000000000000000000000000000871 226.0
SRD3_k127_4074558_28 dioxygenase of extradiol dioxygenase family K06991 - - 0.0000000000000000000000000000000000000000000000000000000000000005174 221.0
SRD3_k127_4074558_29 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000000000000000000000005218 214.0
SRD3_k127_4074558_3 Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate K06447 - 1.2.1.71 1.052e-234 733.0
SRD3_k127_4074558_30 Flavodoxin-like fold K19784 - - 0.000000000000000000000000000000000000000000000000000000000001172 216.0
SRD3_k127_4074558_31 Prokaryotic cytochrome b561 - - - 0.00000000000000000000000000000000000000000000000000000000001938 213.0
SRD3_k127_4074558_32 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000007602 209.0
SRD3_k127_4074558_33 peptidase M22 - - - 0.00000000000000000000000000000000000000000000000000000006659 202.0
SRD3_k127_4074558_34 Glutathione S-transferase K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000006773 190.0
SRD3_k127_4074558_35 Acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000008555 194.0
SRD3_k127_4074558_36 SCO1/SenC K07152 - - 0.0000000000000000000000000000000000000000000002118 174.0
SRD3_k127_4074558_37 Acetyltransferase K03789 - 2.3.1.128 0.0000000000000000000000000000000000000000000006077 174.0
SRD3_k127_4074558_38 DoxX K15977 - - 0.00000000000000000000000000000000000000002168 156.0
SRD3_k127_4074558_39 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000001954 145.0
SRD3_k127_4074558_4 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 7.503e-223 695.0
SRD3_k127_4074558_40 Predicted membrane protein (DUF2231) - - - 0.000000000000000000000000000000000000131 146.0
SRD3_k127_4074558_41 membrane - - - 0.0000000000000000000000000000000000473 139.0
SRD3_k127_4074558_42 Cytochrome C' - - - 0.000000000000000000000003423 109.0
SRD3_k127_4074558_43 - - - - 0.00000000000000007349 86.0
SRD3_k127_4074558_44 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000002815 78.0
SRD3_k127_4074558_45 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000005631 78.0
SRD3_k127_4074558_46 - - - - 0.0000001192 57.0
SRD3_k127_4074558_47 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate - - - 0.000006353 50.0
SRD3_k127_4074558_48 shikimate kinase activity - - - 0.00002219 50.0
SRD3_k127_4074558_5 it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins K02314 - 3.6.4.12 3.392e-222 698.0
SRD3_k127_4074558_6 acyl-CoA dehydrogenase K00249 - 1.3.8.7 1.62e-209 655.0
SRD3_k127_4074558_7 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.653e-198 627.0
SRD3_k127_4074558_8 Uncharacterized ACR, YdiU/UPF0061 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 612.0
SRD3_k127_4074558_9 Peptidase, M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004604 581.0
SRD3_k127_4076034_0 Transposase DDE domain K07487 - - 7.527e-218 682.0
SRD3_k127_4076034_1 Amidohydrolase family - - - 0.0000000000000000000001966 103.0
SRD3_k127_4238707_0 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.0 1208.0
SRD3_k127_4238707_1 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274,K02298,K15408 - 1.10.3.10,1.9.3.1 5.148e-281 879.0
SRD3_k127_4238707_10 reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000002434 228.0
SRD3_k127_4238707_11 rod shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000000000000000000000001359 199.0
SRD3_k127_4238707_12 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000005734 195.0
SRD3_k127_4238707_13 COG0346 Lactoylglutathione lyase and related lyases - - - 0.00000000000000000000000000000000000000000000000001082 183.0
SRD3_k127_4238707_14 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000001033 169.0
SRD3_k127_4238707_15 CrcB-like protein, Camphor Resistance (CrcB) K06199 - - 0.0000000000000000000000000000000000000002599 152.0
SRD3_k127_4238707_16 Cytochrome c oxidase caa3-type, assembly factor K02351 - - 0.000000000000000000000000000000000000006324 159.0
SRD3_k127_4238707_17 Cytochrome C oxidase, cbb3-type, subunit III K00406 - - 0.0000000000000000000000000000000036 138.0
SRD3_k127_4238707_18 Belongs to the ompA family - - - 0.000000000000000000000000000001485 134.0
SRD3_k127_4238707_19 Belongs to the 'phage' integrase family - - - 0.00000000000000000000000001229 117.0
SRD3_k127_4238707_2 Penicillin-binding Protein K05515 - 3.4.16.4 2.825e-245 772.0
SRD3_k127_4238707_20 Cold-shock protein K03704 - - 0.000000000000000000000000264 106.0
SRD3_k127_4238707_21 transcriptional regulator - - - 0.000000000000000000007235 97.0
SRD3_k127_4238707_22 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K00219 - 1.3.1.34 0.0000000000000001283 91.0
SRD3_k127_4238707_23 helix_turn_helix, cAMP Regulatory protein K21563 - - 0.0000002005 59.0
SRD3_k127_4238707_24 Outer membrane protein beta-barrel domain K16079 - - 0.0000007854 61.0
SRD3_k127_4238707_3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 1.327e-241 761.0
SRD3_k127_4238707_4 Dehydrogenase - - - 2.511e-217 691.0
SRD3_k127_4238707_5 rod shape-determining protein MreB K03569 - - 4.116e-194 608.0
SRD3_k127_4238707_6 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001636 492.0
SRD3_k127_4238707_7 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 390.0
SRD3_k127_4238707_8 Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 338.0
SRD3_k127_4238707_9 Cytochrome C oxidase subunit II, periplasmic domain K02275 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000659 271.0
SRD3_k127_4297957_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1414.0
SRD3_k127_4297957_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1145.0
SRD3_k127_4297957_10 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 2.166e-208 657.0
SRD3_k127_4297957_11 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103 600.0
SRD3_k127_4297957_12 membrane - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 593.0
SRD3_k127_4297957_13 Pyrrolo-quinoline quinone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005813 581.0
SRD3_k127_4297957_14 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009613 561.0
SRD3_k127_4297957_15 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000764 556.0
SRD3_k127_4297957_16 acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009853 552.0
SRD3_k127_4297957_17 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000126 537.0
SRD3_k127_4297957_18 alpha/beta hydrolase fold K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003352 519.0
SRD3_k127_4297957_19 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 521.0
SRD3_k127_4297957_2 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.758e-301 930.0
SRD3_k127_4297957_20 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006306 493.0
SRD3_k127_4297957_21 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002562 491.0
SRD3_k127_4297957_22 Belongs to the SEDS family K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 486.0
SRD3_k127_4297957_23 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 477.0
SRD3_k127_4297957_24 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004946 466.0
SRD3_k127_4297957_25 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 465.0
SRD3_k127_4297957_26 exodeoxyribonuclease III K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006939 447.0
SRD3_k127_4297957_27 Fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 437.0
SRD3_k127_4297957_28 molecular chaperone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005594 424.0
SRD3_k127_4297957_29 ribonuclease BN K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 413.0
SRD3_k127_4297957_3 Prolyl oligopeptidase K01322 - 3.4.21.26 3.204e-300 936.0
SRD3_k127_4297957_30 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K13283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 398.0
SRD3_k127_4297957_31 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002943 392.0
SRD3_k127_4297957_32 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008724 359.0
SRD3_k127_4297957_33 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007845 337.0
SRD3_k127_4297957_34 RarD protein K05786 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009495 325.0
SRD3_k127_4297957_35 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 314.0
SRD3_k127_4297957_36 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 320.0
SRD3_k127_4297957_37 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004247 299.0
SRD3_k127_4297957_38 PhzC PhzF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 303.0
SRD3_k127_4297957_39 Crp-like helix-turn-helix domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001674 291.0
SRD3_k127_4297957_4 poly(R)-hydroxyalkanoic acid synthase K03821 - - 4.151e-276 859.0
SRD3_k127_4297957_40 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001216 284.0
SRD3_k127_4297957_41 Chaperone required for the assembly of the mitochondrial F1-ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001968 286.0
SRD3_k127_4297957_42 Domain of unknown function (DUF4893) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001306 265.0
SRD3_k127_4297957_43 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001722 251.0
SRD3_k127_4297957_44 Protein of unknown function (DUF541) K09807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001236 247.0
SRD3_k127_4297957_45 Xre family transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000002916 246.0
SRD3_k127_4297957_46 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000000000000000000000000000000000000000005128 234.0
SRD3_k127_4297957_47 Hpt domain K20976 - - 0.00000000000000000000000000000000000000000000000000000000000005153 218.0
SRD3_k127_4297957_48 lactoylglutathione lyase activity - - - 0.000000000000000000000000000000000000000000000000000000000001075 213.0
SRD3_k127_4297957_49 Tetratricopeptide repeat-like domain - - - 0.000000000000000000000000000000000000000000000000000000000001243 216.0
SRD3_k127_4297957_5 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 9.065e-258 803.0
SRD3_k127_4297957_50 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000000000000000000003533 197.0
SRD3_k127_4297957_51 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000000000000000000000000001308 197.0
SRD3_k127_4297957_52 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000001072 198.0
SRD3_k127_4297957_53 Nudix hydrolase - - - 0.00000000000000000000000000000000000000000000000000001093 192.0
SRD3_k127_4297957_54 Protein of unknown function (DUF1153) - - - 0.000000000000000000000000000000000000000000000000514 176.0
SRD3_k127_4297957_55 Transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000007502 180.0
SRD3_k127_4297957_56 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000008624 181.0
SRD3_k127_4297957_57 - - - - 0.0000000000000000000000000000000000000000000006556 174.0
SRD3_k127_4297957_58 Belongs to the HesB IscA family - - - 0.000000000000000000000000000000000000000002744 160.0
SRD3_k127_4297957_59 Domain of unknown function (DUF4440) - - - 0.00000000000000000000000000000000000000003547 156.0
SRD3_k127_4297957_6 Cell division protein FtsI penicillin-binding protein K03587 - 3.4.16.4 5.09e-244 767.0
SRD3_k127_4297957_60 - - - - 0.000000000000000000000000000000000000006402 153.0
SRD3_k127_4297957_61 Phasin protein - - - 0.00000000000000000000000000000000000009981 151.0
SRD3_k127_4297957_62 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000317 143.0
SRD3_k127_4297957_63 - - - - 0.000000000000000000000000000000003224 140.0
SRD3_k127_4297957_64 Transglycosylase associated protein - - - 0.0000000000000000000000000000006773 123.0
SRD3_k127_4297957_65 Transglycosylase associated protein - - - 0.000000000000000000000000000001171 125.0
SRD3_k127_4297957_66 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. - - - 0.0000000000000000000000000002274 132.0
SRD3_k127_4297957_67 -acetyltransferase K03826,K03827,K18816 - 2.3.1.82 0.0000000000000000000000004931 109.0
SRD3_k127_4297957_68 Predicted membrane protein (DUF2306) - - - 0.000000000000000000000002558 111.0
SRD3_k127_4297957_69 - - - - 0.00000000000000000000005338 105.0
SRD3_k127_4297957_7 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 7.561e-238 740.0
SRD3_k127_4297957_70 membrane - - - 0.0000000000000000000001054 99.0
SRD3_k127_4297957_71 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000000000006177 91.0
SRD3_k127_4297957_72 serine-type endopeptidase activity K20276 - - 0.00000000000000352 85.0
SRD3_k127_4297957_73 Acetyltransferase (GNAT) domain - - - 0.000000000000136 80.0
SRD3_k127_4297957_74 Domain of unknown function (DUF4440) - - - 0.000000000002328 72.0
SRD3_k127_4297957_75 - - - - 0.000000000008519 74.0
SRD3_k127_4297957_79 - - - - 0.0000002191 57.0
SRD3_k127_4297957_8 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 9.41e-228 710.0
SRD3_k127_4297957_80 - - - - 0.00004946 55.0
SRD3_k127_4297957_9 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 9.639e-221 692.0
SRD3_k127_4760804_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 478.0
SRD3_k127_4879159_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1700.0
SRD3_k127_4879159_1 Belongs to the ClpA ClpB family K03694 - - 0.0 1262.0
SRD3_k127_4879159_10 Belongs to the DEAD box helicase family - - - 7.158e-194 612.0
SRD3_k127_4879159_11 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 525.0
SRD3_k127_4879159_12 Glutathione S-transferase K11209 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 472.0
SRD3_k127_4879159_13 NADPH quinone - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004482 449.0
SRD3_k127_4879159_14 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001652 412.0
SRD3_k127_4879159_15 protein conserved in bacteria K09987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 367.0
SRD3_k127_4879159_16 PFAM SapC family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 367.0
SRD3_k127_4879159_17 polyphosphate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 368.0
SRD3_k127_4879159_18 Bacterial protein of unknown function (DUF899) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 345.0
SRD3_k127_4879159_19 Protein phosphatase 2A homologues, catalytic domain. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001732 334.0
SRD3_k127_4879159_2 receptor K02014 - - 0.0 1088.0
SRD3_k127_4879159_20 Gluconolactonase K01053 - 3.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 317.0
SRD3_k127_4879159_21 Belongs to the BI1 family K06890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 303.0
SRD3_k127_4879159_22 Belongs to the GST superfamily K00799 - 2.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003245 288.0
SRD3_k127_4879159_23 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000152 268.0
SRD3_k127_4879159_24 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001815 256.0
SRD3_k127_4879159_25 N-formylglutamate amidohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001182 254.0
SRD3_k127_4879159_26 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000001701 247.0
SRD3_k127_4879159_27 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004821 256.0
SRD3_k127_4879159_28 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - - 0.000000000000000000000000000000000000000000000000000000000000000335 226.0
SRD3_k127_4879159_29 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000007594 219.0
SRD3_k127_4879159_3 Prolyl oligopeptidase family - - - 2.282e-289 904.0
SRD3_k127_4879159_30 response regulator K13589 - - 0.000000000000000000000000000000000000000000000000000000001889 218.0
SRD3_k127_4879159_31 Domain of unknown function (DUF4956) - - - 0.00000000000000000000000000000000000000000000000000000000729 205.0
SRD3_k127_4879159_32 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000000000652 175.0
SRD3_k127_4879159_33 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000000000000000000005203 174.0
SRD3_k127_4879159_34 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000001454 150.0
SRD3_k127_4879159_35 - - - - 0.0000000000000000000000000000000000001795 146.0
SRD3_k127_4879159_36 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000005402 148.0
SRD3_k127_4879159_37 - - - - 0.0000000000000000000000000000004846 128.0
SRD3_k127_4879159_38 - - - - 0.000000000000000000000000000008475 126.0
SRD3_k127_4879159_39 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00000000000000000000000001626 110.0
SRD3_k127_4879159_4 cellulose binding - - - 1.248e-264 855.0
SRD3_k127_4879159_40 Protein of unknown function (DUF1192) - - - 0.000000000837 64.0
SRD3_k127_4879159_41 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000194 61.0
SRD3_k127_4879159_43 Transcriptional regulatory protein, C terminal - - - 0.00004522 57.0
SRD3_k127_4879159_44 - - - - 0.0001618 50.0
SRD3_k127_4879159_45 Protein of unknown function (DUF418) K07148 - - 0.0001847 45.0
SRD3_k127_4879159_47 - - - - 0.0005921 45.0
SRD3_k127_4879159_5 X-Pro dipeptidyl-peptidase (S15 family) - - - 6.323e-250 787.0
SRD3_k127_4879159_6 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 2.988e-244 766.0
SRD3_k127_4879159_7 Peptidase, M28 - - - 1.042e-235 741.0
SRD3_k127_4879159_8 Peptidase family M1 domain - - - 2.343e-203 648.0
SRD3_k127_4879159_9 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 5.761e-194 619.0
SRD3_k127_4905981_0 Belongs to the IlvD Edd family K01690 - 4.2.1.12 8.429e-305 942.0
SRD3_k127_4905981_1 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 7.123e-224 697.0
SRD3_k127_4905981_10 Aldolase K01625 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 4.1.2.14,4.1.3.42 0.00000000000000000000000000000000000000000000000000000000000000000000001743 248.0
SRD3_k127_4905981_11 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001154 250.0
SRD3_k127_4905981_12 COG0346 Lactoylglutathione lyase and related lyases - - - 0.0000000000000000000000000000000000000000000000001218 179.0
SRD3_k127_4905981_13 Mannose-6-phosphate isomerase - - - 0.00000000000000000000000000000000000000000000001021 174.0
SRD3_k127_4905981_14 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000001137 167.0
SRD3_k127_4905981_2 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 3.161e-215 677.0
SRD3_k127_4905981_3 AMP-binding enzyme C-terminal domain K08295 - 6.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003658 503.0
SRD3_k127_4905981_4 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002277 489.0
SRD3_k127_4905981_5 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 445.0
SRD3_k127_4905981_6 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004637 416.0
SRD3_k127_4905981_7 Enoyl-CoA hydratase isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 365.0
SRD3_k127_4905981_8 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001019 290.0
SRD3_k127_4905981_9 glutamine amidotransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002901 263.0
SRD3_k127_5000819_0 TonB dependent receptor K02014 - - 0.0 1483.0
SRD3_k127_5000819_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 2.049e-266 826.0
SRD3_k127_5000819_10 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 368.0
SRD3_k127_5000819_11 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 359.0
SRD3_k127_5000819_12 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 338.0
SRD3_k127_5000819_13 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 329.0
SRD3_k127_5000819_14 phosphoserine phosphatase K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 297.0
SRD3_k127_5000819_15 Sporulation related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006386 288.0
SRD3_k127_5000819_16 FOG TPR repeat, SEL1 subfamily K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003943 271.0
SRD3_k127_5000819_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001855 256.0
SRD3_k127_5000819_18 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003108 258.0
SRD3_k127_5000819_19 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000000000000000000000000000000000000000001053 234.0
SRD3_k127_5000819_2 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.151e-237 742.0
SRD3_k127_5000819_20 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000009139 219.0
SRD3_k127_5000819_21 Bacterial transferase hexapeptide (six repeats) - - - 0.0000000000000000000000000000000000000000000000000000004671 198.0
SRD3_k127_5000819_22 - - - - 0.00000000000000000000000000000000000000000000000001538 187.0
SRD3_k127_5000819_23 NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000003396 190.0
SRD3_k127_5000819_24 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000007381 152.0
SRD3_k127_5000819_25 receptor K02014 - - 0.000000000000000000000000000003049 139.0
SRD3_k127_5000819_26 TIR domain - - - 0.00000000000000000000000000004251 135.0
SRD3_k127_5000819_27 Outer membrane protein beta-barrel domain - - - 0.0000000000000001864 82.0
SRD3_k127_5000819_28 - - - - 0.000000001287 59.0
SRD3_k127_5000819_3 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 6.316e-208 659.0
SRD3_k127_5000819_30 Psort location Cytoplasmic, score 8.87 - - - 0.0007856 46.0
SRD3_k127_5000819_4 Alkaline phosphatase with broad substrate specificity K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003071 561.0
SRD3_k127_5000819_5 Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 494.0
SRD3_k127_5000819_6 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001193 486.0
SRD3_k127_5000819_7 involved in chromosome partitioning K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007361 417.0
SRD3_k127_5000819_8 Protein of unknown function (DUF3089) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002758 391.0
SRD3_k127_5000819_9 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 384.0
SRD3_k127_5051287_0 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 1.423e-316 977.0
SRD3_k127_5051287_1 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 9.582e-275 878.0
SRD3_k127_5051287_10 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000002441 241.0
SRD3_k127_5051287_12 small integral membrane protein - - - 0.0000000000000000000000000000000000000000001061 164.0
SRD3_k127_5051287_13 COG2826 Transposase and inactivated derivatives, IS30 family K07482 GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0004803,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006313,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0030983,GO:0032135,GO:0032196,GO:0032991,GO:0032993,GO:0034641,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 - 0.0000000000000000000000000000000000007348 139.0
SRD3_k127_5051287_14 - - - - 0.00000000000000000000000000000000001737 143.0
SRD3_k127_5051287_15 Cold-shock protein K03704 - - 0.00000000000000000000000000003864 120.0
SRD3_k127_5051287_16 Transcriptional regulatory protein, C terminal - - - 0.0000000000000000000000000957 124.0
SRD3_k127_5051287_17 - - - - 0.0000000000000000000001396 98.0
SRD3_k127_5051287_19 glycosyl transferase group 1 - - - 0.0000000003436 72.0
SRD3_k127_5051287_2 Belongs to the DegT DnrJ EryC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001411 551.0
SRD3_k127_5051287_20 PFAM Methyltransferase type 11 - - - 0.000000002251 70.0
SRD3_k127_5051287_21 acetyltransferase - - - 0.00000004417 64.0
SRD3_k127_5051287_22 C-lobe and N-lobe beta barrels of Tf-binding protein B - - - 0.0000002681 63.0
SRD3_k127_5051287_23 HEPN domain - - - 0.00005736 46.0
SRD3_k127_5051287_3 Male sterility protein K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002635 532.0
SRD3_k127_5051287_4 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 488.0
SRD3_k127_5051287_5 photosynthesis K20543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002122 462.0
SRD3_k127_5051287_6 Esterase PHB depolymerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 414.0
SRD3_k127_5051287_8 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000324 276.0
SRD3_k127_5051287_9 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000004508 247.0
SRD3_k127_5066580_0 DNA helicase K03657 - 3.6.4.12 0.0 1243.0
SRD3_k127_5066580_1 Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity K03782 - 1.11.1.21 0.0 1154.0
SRD3_k127_5066580_10 Transcriptional regulator K04761 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001905 438.0
SRD3_k127_5066580_11 Putative diguanylate phosphodiesterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 423.0
SRD3_k127_5066580_12 Dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003377 399.0
SRD3_k127_5066580_13 protein conserved in bacteria K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 387.0
SRD3_k127_5066580_14 serine acetyltransferase K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002922 345.0
SRD3_k127_5066580_15 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000626 346.0
SRD3_k127_5066580_16 Alkyl hydroperoxide reductase K03386 - 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009743 318.0
SRD3_k127_5066580_17 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005303 312.0
SRD3_k127_5066580_18 SOS response associated peptidase (SRAP) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 300.0
SRD3_k127_5066580_19 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 304.0
SRD3_k127_5066580_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 4.155e-315 972.0
SRD3_k127_5066580_20 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 294.0
SRD3_k127_5066580_21 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002654 276.0
SRD3_k127_5066580_22 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity K04756 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001498 253.0
SRD3_k127_5066580_23 PFAM Phenazine biosynthesis PhzC PhzF protein K06998 - 5.3.3.17 0.0000000000000000000000000000000000000000000000000000000000000000000000006606 256.0
SRD3_k127_5066580_24 glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004079 235.0
SRD3_k127_5066580_25 - - - - 0.000000000000000000000000000000000000000000000000000000000000005699 226.0
SRD3_k127_5066580_26 - - - - 0.000000000000000000000000000000000000000000000000000000000003169 211.0
SRD3_k127_5066580_27 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000005469 204.0
SRD3_k127_5066580_28 Methyltransferase K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000000003867 199.0
SRD3_k127_5066580_29 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000000000000000000000000000002498 188.0
SRD3_k127_5066580_3 Acetyl-coenzyme A transporter 1 K08218 - - 5.504e-224 707.0
SRD3_k127_5066580_30 Protein of unknown function (DUF2794) - - - 0.0000000000000000000000000000000000000000000002754 170.0
SRD3_k127_5066580_31 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.000000000000000000000000000000000000000000011 164.0
SRD3_k127_5066580_32 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000002573 156.0
SRD3_k127_5066580_33 response regulator - - - 0.00000000000000000000000000007049 125.0
SRD3_k127_5066580_34 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000006005 123.0
SRD3_k127_5066580_35 Hemerythrin HHE cation binding domain - - - 0.000000000000000000000000555 109.0
SRD3_k127_5066580_36 GCN5-related N-acetyl-transferase K06975 - - 0.00000000000000000000003576 102.0
SRD3_k127_5066580_37 Pfam:DUF1049 K08992 - - 0.0000000000000000000002402 99.0
SRD3_k127_5066580_38 Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria - - - 0.0000000000000000282 84.0
SRD3_k127_5066580_39 phage phi-C31 gp36 major capsid-like protein - - - 0.0000000000000001886 82.0
SRD3_k127_5066580_4 beta-lactamase K01467 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 560.0
SRD3_k127_5066580_40 PilZ domain - - - 0.0000000001 70.0
SRD3_k127_5066580_41 PFAM blue (type 1) copper domain protein - - - 0.0000000008313 66.0
SRD3_k127_5066580_42 - - - - 0.000000004607 69.0
SRD3_k127_5066580_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001166 537.0
SRD3_k127_5066580_6 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009124 525.0
SRD3_k127_5066580_7 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 524.0
SRD3_k127_5066580_8 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006209 479.0
SRD3_k127_5066580_9 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005213 451.0
SRD3_k127_5412040_0 aminopeptidase N K01256 - 3.4.11.2 0.0 1114.0
SRD3_k127_5412040_1 Aminotransferase K14261 - - 4.748e-212 665.0
SRD3_k127_5412040_2 UPF0126 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000059 273.0
SRD3_k127_5412040_3 Putative MetA-pathway of phenol degradation - - - 0.0000000000000000000000000000000000000000000000000000000000000007184 229.0
SRD3_k127_5412040_4 membrane - - - 0.00000000000000000000000000000001195 132.0
SRD3_k127_5412040_5 Uncharacterized protein conserved in bacteria (DUF2171) - - - 0.000000000000000000000000000003346 121.0
SRD3_k127_5461168_0 Glucose dehydrogenase K00117 - 1.1.5.2 0.0 1053.0
SRD3_k127_5461168_1 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01969 - 6.4.1.4 7.315e-304 938.0
SRD3_k127_5461168_10 Amidohydrolase family - - - 8.855e-206 661.0
SRD3_k127_5461168_11 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 4.355e-196 628.0
SRD3_k127_5461168_12 UDP-N-acetylmuramate-alanine ligase K01924 - 6.3.2.8 1.506e-195 619.0
SRD3_k127_5461168_13 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007399 613.0
SRD3_k127_5461168_14 COG0477 Permeases of the major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 576.0
SRD3_k127_5461168_15 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 573.0
SRD3_k127_5461168_16 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001986 563.0
SRD3_k127_5461168_17 peptidase M48, Ste24p - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 542.0
SRD3_k127_5461168_18 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 493.0
SRD3_k127_5461168_19 PFAM major facilitator superfamily MFS_1 K08169 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007825 496.0
SRD3_k127_5461168_2 2-nitropropane dioxygenase - - - 2.362e-273 844.0
SRD3_k127_5461168_20 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000701 476.0
SRD3_k127_5461168_21 Glycosyl transferase family 2 K20534 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007666 469.0
SRD3_k127_5461168_22 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005521 440.0
SRD3_k127_5461168_23 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003033 437.0
SRD3_k127_5461168_24 Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K11206 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001889 409.0
SRD3_k127_5461168_25 Belongs to the 'phage' integrase family K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005015 409.0
SRD3_k127_5461168_26 Belongs to the NadC ModD family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506 382.0
SRD3_k127_5461168_27 L,D-transpeptidase catalytic domain K21470 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 390.0
SRD3_k127_5461168_28 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003966 363.0
SRD3_k127_5461168_29 FAD-NAD(P)-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 373.0
SRD3_k127_5461168_3 Peptidase family M13 K07386 - - 3.371e-271 852.0
SRD3_k127_5461168_30 GTP cyclohydrolase K01495 - 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003546 355.0
SRD3_k127_5461168_31 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004617 361.0
SRD3_k127_5461168_32 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002914 342.0
SRD3_k127_5461168_33 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009824 331.0
SRD3_k127_5461168_34 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008327 314.0
SRD3_k127_5461168_35 proteins, homologs of microcin C7 resistance protein MccF K01297 - 3.4.17.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 316.0
SRD3_k127_5461168_36 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 290.0
SRD3_k127_5461168_37 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 286.0
SRD3_k127_5461168_38 Activator of Hsp90 ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 282.0
SRD3_k127_5461168_39 Methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009668 263.0
SRD3_k127_5461168_4 acetyl propionyl-CoA carboxylase, alpha subunit K01968 - 6.4.1.4 1.308e-243 768.0
SRD3_k127_5461168_40 Methanol dehydrogenase K06872 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004574 260.0
SRD3_k127_5461168_41 Transposase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001948 240.0
SRD3_k127_5461168_42 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000001345 237.0
SRD3_k127_5461168_43 - - - - 0.00000000000000000000000000000000000000000000000000000000000000004653 238.0
SRD3_k127_5461168_44 - - - - 0.00000000000000000000000000000000000000000000000000000000000001085 219.0
SRD3_k127_5461168_45 Glutathione-dependent formaldehyde-activating enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000002753 217.0
SRD3_k127_5461168_46 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.000000000000000000000000000000000000000000000000000000000003782 218.0
SRD3_k127_5461168_47 membrane K08988 - - 0.000000000000000000000000000000000000000000000000000000000009375 221.0
SRD3_k127_5461168_48 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.0000000000000000000000000000000000000000000000000000000001152 208.0
SRD3_k127_5461168_49 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 - - 0.000000000000000000000000000000000000000000000000000000001654 203.0
SRD3_k127_5461168_5 COG3653 N-acyl-D-aspartate D-glutamate deacylase K06015 - 3.5.1.81 2.42e-236 743.0
SRD3_k127_5461168_50 Nudix hydrolase K01515 - 3.6.1.13 0.0000000000000000000000000000000000000000000000000000009372 198.0
SRD3_k127_5461168_51 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000009968 198.0
SRD3_k127_5461168_52 ligase activity - - - 0.0000000000000000000000000000000000000000000000000006588 196.0
SRD3_k127_5461168_53 Domain of unknown function (DUF2383) - - - 0.00000000000000000000000000000000000000000000000001684 185.0
SRD3_k127_5461168_54 Colicin V production protein K03558 - - 0.0000000000000000000000000000000000000000000000001646 181.0
SRD3_k127_5461168_55 Activator of Hsp90 ATPase - - - 0.00000000000000000000000000000000000000000000009174 170.0
SRD3_k127_5461168_56 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000001929 167.0
SRD3_k127_5461168_57 - - - - 0.00000000000000000000000000000000000000007271 156.0
SRD3_k127_5461168_58 protein conserved in bacteria - - - 0.000000000000000000000000000000000000006356 149.0
SRD3_k127_5461168_59 - - - - 0.0000000000000000000000000000000000000344 154.0
SRD3_k127_5461168_6 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 1.028e-230 743.0
SRD3_k127_5461168_61 rhamnose metabolic process - - - 0.0000000000000000000000000000000007053 138.0
SRD3_k127_5461168_62 NifU homolog involved in Fe-S cluster formation - - - 0.000000000000000000000000000000002144 135.0
SRD3_k127_5461168_64 PFAM SWIB MDM2 domain - - - 0.00000000000000000000000000001259 124.0
SRD3_k127_5461168_65 Domain of unknown function (DUF4402) - - - 0.00000000000000000000000000001732 123.0
SRD3_k127_5461168_66 Endoribonuclease L-PSP - - - 0.0000000000000000000000000001151 123.0
SRD3_k127_5461168_67 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins K03676 - - 0.00000000000000000000000004409 109.0
SRD3_k127_5461168_68 Gram-negative bacterial TonB protein C-terminal - - - 0.000000000000001296 87.0
SRD3_k127_5461168_7 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 2.05e-227 714.0
SRD3_k127_5461168_72 Protein of unknown function (DUF3606) - - - 0.00000001881 57.0
SRD3_k127_5461168_74 - - - - 0.0000007935 58.0
SRD3_k127_5461168_75 - - - - 0.00003865 49.0
SRD3_k127_5461168_77 PilZ domain - - - 0.0001444 49.0
SRD3_k127_5461168_8 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455,K11747 - - 3.172e-212 677.0
SRD3_k127_5461168_9 Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA K00253 - 1.3.8.4 5.131e-211 660.0
SRD3_k127_5861438_0 - - - - 0.0000004526 59.0
SRD3_k127_5861438_1 - - - - 0.0001317 53.0
SRD3_k127_6098311_0 His Kinase A (phosphoacceptor) domain - - - 0.0 2970.0
SRD3_k127_6098311_1 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit K01469 - 3.5.2.9 0.0 1645.0
SRD3_k127_6098311_10 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000994 540.0
SRD3_k127_6098311_11 RND efflux system, outer membrane lipoprotein K18139 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003786 531.0
SRD3_k127_6098311_12 GDP-mannose 4,6 dehydratase K08678 - 4.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 501.0
SRD3_k127_6098311_13 2-nitropropane dioxygenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 485.0
SRD3_k127_6098311_14 Methionine aminopeptidase K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015 484.0
SRD3_k127_6098311_15 epimerase dehydratase K08679 - 5.1.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002375 478.0
SRD3_k127_6098311_16 alcohol dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 478.0
SRD3_k127_6098311_17 GguC protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 471.0
SRD3_k127_6098311_18 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009174 473.0
SRD3_k127_6098311_19 coproporphyrinogen III oxidase K00228 - 1.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 457.0
SRD3_k127_6098311_2 Efflux pump membrane transporter K18138 - - 0.0 1468.0
SRD3_k127_6098311_20 ABC transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002004 447.0
SRD3_k127_6098311_21 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 445.0
SRD3_k127_6098311_22 alpha/beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005053 434.0
SRD3_k127_6098311_23 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005554 408.0
SRD3_k127_6098311_24 Protein of unknown function (DUF2891) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006772 423.0
SRD3_k127_6098311_25 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004688 376.0
SRD3_k127_6098311_26 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007314 357.0
SRD3_k127_6098311_27 Nucleotidyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003155 347.0
SRD3_k127_6098311_28 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007465 302.0
SRD3_k127_6098311_29 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008915 292.0
SRD3_k127_6098311_3 Peptidase family M1 domain - - - 0.0 1342.0
SRD3_k127_6098311_30 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002192 272.0
SRD3_k127_6098311_31 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001336 272.0
SRD3_k127_6098311_32 N-acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000207 241.0
SRD3_k127_6098311_33 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000001563 205.0
SRD3_k127_6098311_34 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000000000000000000000000000000001369 198.0
SRD3_k127_6098311_35 Protein of unknown function (DUF1465) K13592 - - 0.0000000000000000000000000000000000000000000000000000000663 200.0
SRD3_k127_6098311_36 thioesterase K07107 - - 0.0000000000000000000000000000000000000000000000000000001871 196.0
SRD3_k127_6098311_37 PFAM thioesterase superfamily protein K07107 - - 0.0000000000000000000000000000000000000000000000000002561 188.0
SRD3_k127_6098311_38 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000009986 191.0
SRD3_k127_6098311_39 - - - - 0.0000000000000000000000000000000000000000001726 168.0
SRD3_k127_6098311_4 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1289.0
SRD3_k127_6098311_40 - - - - 0.00000000000000000000000000000000000000000061 175.0
SRD3_k127_6098311_41 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000003983 143.0
SRD3_k127_6098311_42 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.000000000000000000000000000001205 134.0
SRD3_k127_6098311_44 - - - - 0.000000000000000000000000007948 113.0
SRD3_k127_6098311_45 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000694 106.0
SRD3_k127_6098311_47 Small protein - - - 0.000000000002801 68.0
SRD3_k127_6098311_48 - - - - 0.00000000005176 72.0
SRD3_k127_6098311_49 EF-hand, calcium binding motif - - - 0.000000005035 63.0
SRD3_k127_6098311_5 PA14 domain K05349 - 3.2.1.21 0.0 1071.0
SRD3_k127_6098311_6 Histidine kinase - - - 1.316e-259 819.0
SRD3_k127_6098311_7 Asparagine synthase, glutamine-hydrolyzing K01953 - 6.3.5.4 4.576e-244 772.0
SRD3_k127_6098311_8 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001174 608.0
SRD3_k127_6098311_9 Transporter K02429 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008743 563.0
SRD3_k127_6155000_0 Flp pilus assembly protein, ATPase CpaF K02283 - - 7.444e-269 834.0
SRD3_k127_6155000_1 asparagine synthase K01953 - 6.3.5.4 2.48e-234 742.0
SRD3_k127_6155000_10 - - - - 0.000000000000000000000664 101.0
SRD3_k127_6155000_2 Cytochrome C biogenesis protein transmembrane region - - - 1.119e-225 715.0
SRD3_k127_6155000_3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008371 276.0
SRD3_k127_6155000_4 polysaccharide biosynthetic process - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002149 267.0
SRD3_k127_6155000_5 Protein of unknown function (DUF541) K09807 - - 0.0000000000000000000000000000000000000000000000000000000000000000000812 238.0
SRD3_k127_6155000_6 Mitochondrial fission ELM1 K07276 - - 0.000000000000000000000000000000000000000000000000004083 194.0
SRD3_k127_6155000_7 Mitochondrial fission ELM1 K07276 - - 0.0000000000000000000000000000000000000000001273 176.0
SRD3_k127_6155000_8 Produces ATP from ADP in the presence of a proton gradient across the membrane K02113,K02114 - - 0.0000000000000000000000000001406 116.0
SRD3_k127_6155000_9 - - - - 0.000000000000000000000005782 101.0
SRD3_k127_6611811_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02622 - - 0.0 1084.0
SRD3_k127_6611811_1 TonB dependent receptor - - - 0.0 1024.0
SRD3_k127_6611811_10 GvpD gas vesicle protein K08482 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004428 614.0
SRD3_k127_6611811_11 Toxic anion resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008726 602.0
SRD3_k127_6611811_12 Belongs to the peptidase M17 family K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007569 594.0
SRD3_k127_6611811_13 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 587.0
SRD3_k127_6611811_14 Sugar (and other) transporter K03762 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 567.0
SRD3_k127_6611811_15 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 559.0
SRD3_k127_6611811_16 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 556.0
SRD3_k127_6611811_17 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K02474,K13015 - 1.1.1.136 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 554.0
SRD3_k127_6611811_18 dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001769 546.0
SRD3_k127_6611811_19 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 530.0
SRD3_k127_6611811_2 Oxidoreductase - - - 5.293e-271 841.0
SRD3_k127_6611811_20 Bacterial sugar transferase K21303 - 2.7.8.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004786 523.0
SRD3_k127_6611811_21 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003568 496.0
SRD3_k127_6611811_22 amino acid transport K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 486.0
SRD3_k127_6611811_23 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002275 471.0
SRD3_k127_6611811_24 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 470.0
SRD3_k127_6611811_25 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007502 452.0
SRD3_k127_6611811_26 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007813 424.0
SRD3_k127_6611811_27 Transport permease protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005819 408.0
SRD3_k127_6611811_28 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004627 407.0
SRD3_k127_6611811_29 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 399.0
SRD3_k127_6611811_3 4Fe-4S single cluster domain - - - 1.361e-256 797.0
SRD3_k127_6611811_30 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007594 389.0
SRD3_k127_6611811_31 Belongs to the 'phage' integrase family K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000957 391.0
SRD3_k127_6611811_32 Mycolic acid cyclopropane synthetase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001491 381.0
SRD3_k127_6611811_33 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001282 366.0
SRD3_k127_6611811_34 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 364.0
SRD3_k127_6611811_35 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 361.0
SRD3_k127_6611811_36 Iron dicitrate transport regulator FecR K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 357.0
SRD3_k127_6611811_37 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 349.0
SRD3_k127_6611811_38 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008432 339.0
SRD3_k127_6611811_39 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 334.0
SRD3_k127_6611811_4 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 5.655e-245 763.0
SRD3_k127_6611811_40 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000385 342.0
SRD3_k127_6611811_41 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 332.0
SRD3_k127_6611811_42 Cys/Met metabolism PLP-dependent enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001784 327.0
SRD3_k127_6611811_43 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 317.0
SRD3_k127_6611811_44 GcrA cell cycle regulator K13583 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 315.0
SRD3_k127_6611811_45 enoyl-CoA hydratase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003541 312.0
SRD3_k127_6611811_46 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 303.0
SRD3_k127_6611811_47 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 316.0
SRD3_k127_6611811_48 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 289.0
SRD3_k127_6611811_49 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003929 275.0
SRD3_k127_6611811_5 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 1.311e-225 707.0
SRD3_k127_6611811_50 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009105 271.0
SRD3_k127_6611811_51 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000002913 265.0
SRD3_k127_6611811_52 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000005098 265.0
SRD3_k127_6611811_53 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000008062 260.0
SRD3_k127_6611811_54 Putative Flp pilus-assembly TadE/G-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002606 269.0
SRD3_k127_6611811_55 Cupin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006111 270.0
SRD3_k127_6611811_56 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001696 252.0
SRD3_k127_6611811_57 GPR1 FUN34 yaaH family protein K07034 GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006846,GO:0006855,GO:0008028,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015078,GO:0015123,GO:0015238,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015355,GO:0015360,GO:0015672,GO:0015711,GO:0015718,GO:0015740,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0034220,GO:0035433,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043893,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1902600,GO:1903825,GO:1905039 - 0.00000000000000000000000000000000000000000000000000000000000000000006821 242.0
SRD3_k127_6611811_58 Protein of unknown function, DUF484 K09921 - - 0.00000000000000000000000000000000000000000000000000000000000000003255 229.0
SRD3_k127_6611811_59 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 - - 0.00000000000000000000000000000000000000000000000000000000004046 214.0
SRD3_k127_6611811_6 Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family K00383 - 1.8.1.7 1.733e-215 676.0
SRD3_k127_6611811_60 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000007719 207.0
SRD3_k127_6611811_61 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins - - - 0.00000000000000000000000000000000000000000000000000000006175 204.0
SRD3_k127_6611811_62 - - - - 0.00000000000000000000000000000000000000000000000000000006711 199.0
SRD3_k127_6611811_63 Belongs to the small heat shock protein (HSP20) family K04080 - - 0.0000000000000000000000000000000000000000000000000000002045 201.0
SRD3_k127_6611811_64 GAF domain - - - 0.000000000000000000000000000000000000000000000000003136 193.0
SRD3_k127_6611811_65 - - - - 0.0000000000000000000000000000000000000001209 160.0
SRD3_k127_6611811_66 Transcriptional regulator - - - 0.0000000000000000000000000000000000000003187 168.0
SRD3_k127_6611811_67 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000000007179 140.0
SRD3_k127_6611811_68 - - - - 0.000000000000000000000000000000000005742 141.0
SRD3_k127_6611811_69 - - - - 0.000000000000000000000000000000502 128.0
SRD3_k127_6611811_7 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 1.896e-213 695.0
SRD3_k127_6611811_70 - - - - 0.000000000000000002865 89.0
SRD3_k127_6611811_71 TadE-like protein - - - 0.00000000000000005414 89.0
SRD3_k127_6611811_73 Flp pilus assembly protein, pilin Flp K02651 - - 0.00000000000001334 76.0
SRD3_k127_6611811_74 NlpC/P60 family - - - 0.00000000000001597 79.0
SRD3_k127_6611811_75 TadE-like protein - - - 0.00000000000003544 81.0
SRD3_k127_6611811_78 Histidine kinase - - - 0.0000000661 66.0
SRD3_k127_6611811_8 acetylornithine aminotransferase K00821 - 2.6.1.11,2.6.1.17 3.01e-207 651.0
SRD3_k127_6611811_80 - - - - 0.00001158 55.0
SRD3_k127_6611811_81 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.00001512 48.0
SRD3_k127_6611811_9 Belongs to the GPI family K01810 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 619.0
SRD3_k127_6627584_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0 1133.0
SRD3_k127_6627584_1 Transferrin receptor-like dimerisation domain - - - 0.0 1032.0
SRD3_k127_6627584_10 Staphylococcal nuclease homologue - - - 0.00000000001417 72.0
SRD3_k127_6627584_12 - - - - 0.0000002264 61.0
SRD3_k127_6627584_2 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 5.459e-209 657.0
SRD3_k127_6627584_3 - - - - 0.00000000000000000000000000000000000000000000000001511 192.0
SRD3_k127_6627584_4 L,D-transpeptidase catalytic domain - - - 0.000000000000000000000000000000000000000000000003743 183.0
SRD3_k127_6627584_5 - - - - 0.00000000000000000000000000000000000000000026 162.0
SRD3_k127_6627584_6 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000001484 145.0
SRD3_k127_6627584_7 DnaK suppressor protein - - - 0.0000000000000000000000000000004034 126.0
SRD3_k127_6627584_8 - - - - 0.0000000000000000000000000006956 118.0
SRD3_k127_6627584_9 nuclease - - - 0.00000000000000000001153 100.0
SRD3_k127_6723746_0 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase K14162 - 2.7.7.7 0.0 1557.0
SRD3_k127_6723746_1 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1486.0
SRD3_k127_6723746_10 Histidine K01745 - 4.3.1.3 1.442e-220 694.0
SRD3_k127_6723746_11 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 2.765e-207 651.0
SRD3_k127_6723746_12 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 2.806e-206 652.0
SRD3_k127_6723746_13 mandelate racemase muconate lactonizing K01684,K01781,K08323 - 4.2.1.6,4.2.1.8,5.1.2.2 1.144e-204 642.0
SRD3_k127_6723746_14 Major facilitator superfamily K03446 - - 3.449e-203 651.0
SRD3_k127_6723746_15 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004045 608.0
SRD3_k127_6723746_16 RND efflux system, outer membrane lipoprotein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001073 574.0
SRD3_k127_6723746_17 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 541.0
SRD3_k127_6723746_18 Nucleotidyltransferase DNA polymerase involved in DNA repair K14161 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 542.0
SRD3_k127_6723746_19 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 516.0
SRD3_k127_6723746_2 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain - - - 0.0 1195.0
SRD3_k127_6723746_20 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 501.0
SRD3_k127_6723746_21 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 483.0
SRD3_k127_6723746_22 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 457.0
SRD3_k127_6723746_23 Domain of unknown function (DUF4118) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004362 458.0
SRD3_k127_6723746_24 ABC transporter, ATP-binding protein K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 447.0
SRD3_k127_6723746_25 COG0365 Acyl-coenzyme A synthetases AMP-(fatty) acid ligases K08295 - 6.2.1.32 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004618 443.0
SRD3_k127_6723746_26 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004026 434.0
SRD3_k127_6723746_27 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 434.0
SRD3_k127_6723746_28 Part of the ABC transporter complex PstSACB involved in phosphate import K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003291 430.0
SRD3_k127_6723746_29 Galactose 1-dehydrogenase K00035 - 1.1.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 417.0
SRD3_k127_6723746_3 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.0 1172.0
SRD3_k127_6723746_30 Imidazolone-5-propionate hydrolase K01468 - 3.5.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009399 417.0
SRD3_k127_6723746_31 Phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001365 420.0
SRD3_k127_6723746_32 Secretion protein, HlyD K03543 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 413.0
SRD3_k127_6723746_33 Arginase family K01480 - 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003285 392.0
SRD3_k127_6723746_34 Carbohydrate kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008212 381.0
SRD3_k127_6723746_35 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 367.0
SRD3_k127_6723746_36 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 369.0
SRD3_k127_6723746_37 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 358.0
SRD3_k127_6723746_38 TIGRFAM phosphate ABC transporter, inner membrane subunit PstA K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 361.0
SRD3_k127_6723746_39 Aminomethyltransferase K06980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008594 347.0
SRD3_k127_6723746_4 COG1505 Serine proteases of the peptidase family S9A K01322 - 3.4.21.26 0.0 1084.0
SRD3_k127_6723746_40 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 351.0
SRD3_k127_6723746_41 ATP dependent DNA ligase C terminal region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 338.0
SRD3_k127_6723746_42 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 344.0
SRD3_k127_6723746_43 Natural resistance-associated macrophage protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001497 342.0
SRD3_k127_6723746_44 ABC-type Na efflux pump, permease component K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002205 324.0
SRD3_k127_6723746_45 2-keto-3-deoxy-galactonokinase K00883 - 2.7.1.58 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007031 299.0
SRD3_k127_6723746_46 Putative cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 299.0
SRD3_k127_6723746_47 COG2513 PEP phosphonomutase and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 290.0
SRD3_k127_6723746_48 Crp-like helix-turn-helix domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006811 282.0
SRD3_k127_6723746_49 Phenylalanine-4-hydroxylase K00500 - 1.14.16.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001258 276.0
SRD3_k127_6723746_5 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 2.945e-321 990.0
SRD3_k127_6723746_50 Aldolase K01631 - 4.1.2.21 0.00000000000000000000000000000000000000000000000000000000000000000000000002219 257.0
SRD3_k127_6723746_51 methylmalonyl-CoA epimerase K05606 - 5.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000001687 243.0
SRD3_k127_6723746_52 2OG-Fe(II) oxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000003841 231.0
SRD3_k127_6723746_53 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000007353 234.0
SRD3_k127_6723746_54 protein conserved in bacteria K09985 - - 0.00000000000000000000000000000000000000000000000000000000000000001053 228.0
SRD3_k127_6723746_55 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000002134 239.0
SRD3_k127_6723746_56 COG1853 Conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family - - - 0.00000000000000000000000000000000000000000000000000000000000004222 222.0
SRD3_k127_6723746_57 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - - - 0.00000000000000000000000000000000000000000000000000000000000005559 215.0
SRD3_k127_6723746_58 Protein of unknown function (DUF2585) - - - 0.000000000000000000000000000000000000000000000000000000000002065 215.0
SRD3_k127_6723746_59 Iron-sulfur cluster assembly protein K02612 - - 0.000000000000000000000000000000000000000000000000000000000004345 211.0
SRD3_k127_6723746_6 acetyl propionyl-CoA carboxylase, alpha subunit K01965 - 6.4.1.3 4.44e-313 971.0
SRD3_k127_6723746_60 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000003843 188.0
SRD3_k127_6723746_61 Lipid A 3-O-deacylase (PagL) - - - 0.00000000000000000000000000000000000000000000000003356 184.0
SRD3_k127_6723746_62 SOS response K14160 - - 0.0000000000000000000000000000000000000000000000007492 183.0
SRD3_k127_6723746_63 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000266 167.0
SRD3_k127_6723746_64 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000003159 158.0
SRD3_k127_6723746_65 protein conserved in bacteria - - - 0.000000000000000000000000000000000007677 141.0
SRD3_k127_6723746_66 pterin-4-alpha-carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000001203 118.0
SRD3_k127_6723746_67 - - - - 0.0000000000000000000000008777 106.0
SRD3_k127_6723746_68 Response regulator receiver - - - 0.0000000000000000000000118 105.0
SRD3_k127_6723746_69 Glutathione-dependent formaldehyde-activating - - - 0.00000000000000000002269 95.0
SRD3_k127_6723746_7 amino acid K03294 - - 3.278e-260 811.0
SRD3_k127_6723746_71 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.000000000000000006621 89.0
SRD3_k127_6723746_72 Lysozyme inhibitor LprI - - - 0.0000000000001755 78.0
SRD3_k127_6723746_73 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.0000001317 63.0
SRD3_k127_6723746_74 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000001963 51.0
SRD3_k127_6723746_76 Flp pilus assembly protein, pilin Flp K02651 - - 0.00007574 48.0
SRD3_k127_6723746_8 Transport of potassium into the cell K03549 - - 4.527e-252 794.0
SRD3_k127_6723746_9 Glycosyl hydrolase family 1 - - - 2.356e-229 715.0
SRD3_k127_683287_0 Uncharacterized alpha/beta hydrolase domain (DUF2235) - - - 1.49e-272 862.0
SRD3_k127_683287_1 COG3666 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003949 493.0
SRD3_k127_6877917_0 Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule K02621 - - 0.0 1087.0
SRD3_k127_6877917_1 GGDEF domain - - - 6.39e-249 781.0
SRD3_k127_6877917_10 dihydroneopterin aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000000001687 173.0
SRD3_k127_6877917_11 Magnesium chelatase, subunit ChlI - - - 0.000000000000005877 83.0
SRD3_k127_6877917_12 TIR domain - - - 0.00006046 46.0
SRD3_k127_6877917_2 Glycosyltransferase Family 4 K14335 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009119 445.0
SRD3_k127_6877917_3 Polynucleotide adenylyltransferase K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 441.0
SRD3_k127_6877917_4 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002875 365.0
SRD3_k127_6877917_5 Uncharacterized protein conserved in bacteria (DUF2334) K06986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002434 272.0
SRD3_k127_6877917_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000233 266.0
SRD3_k127_6877917_7 protein conserved in bacteria K09986 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005714 241.0
SRD3_k127_6877917_8 Nudix hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000001731 233.0
SRD3_k127_6877917_9 Periplasmic protein TonB, links inner and outer membranes K03832 - - 0.000000000000000000000000000000000000000000000021 178.0
SRD3_k127_7123533_0 Carboxypeptidase regulatory-like domain - - - 0.0 1346.0
SRD3_k127_7123533_1 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1268.0
SRD3_k127_7123533_10 Putative glucoamylase - - - 4.472e-222 697.0
SRD3_k127_7123533_11 COG1629 Outer membrane receptor proteins, mostly Fe transport - - - 5.702e-207 664.0
SRD3_k127_7123533_12 Belongs to the phosphoglycerate kinase family K00927 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.2.3 1.141e-206 651.0
SRD3_k127_7123533_13 Tryptophan halogenase K14266 - 1.14.19.9 3.104e-202 646.0
SRD3_k127_7123533_14 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 2.536e-199 636.0
SRD3_k127_7123533_15 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006259 591.0
SRD3_k127_7123533_16 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 581.0
SRD3_k127_7123533_17 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005516 597.0
SRD3_k127_7123533_18 Alpha-L-arabinofuranosidase K01209 - 3.2.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000638 571.0
SRD3_k127_7123533_19 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003946 539.0
SRD3_k127_7123533_2 Belongs to the glycosyl hydrolase 3 family K05349 - 3.2.1.21 0.0 1106.0
SRD3_k127_7123533_20 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004855 504.0
SRD3_k127_7123533_21 permease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 490.0
SRD3_k127_7123533_22 MFS/sugar transport protein K03292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003074 484.0
SRD3_k127_7123533_23 membrane-bound lytic murein transglycosylase K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 480.0
SRD3_k127_7123533_24 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004312 470.0
SRD3_k127_7123533_25 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000763 424.0
SRD3_k127_7123533_26 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004259 374.0
SRD3_k127_7123533_27 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004396 371.0
SRD3_k127_7123533_28 helix_turn _helix lactose operon repressor K02529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 381.0
SRD3_k127_7123533_29 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004651 362.0
SRD3_k127_7123533_3 Belongs to the glycosyl hydrolase 31 family - - - 0.0 1028.0
SRD3_k127_7123533_30 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 356.0
SRD3_k127_7123533_31 Cytochrome C oxidase subunit II, periplasmic domain K02297 - 1.10.3.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001254 349.0
SRD3_k127_7123533_32 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003918 344.0
SRD3_k127_7123533_33 Glutathione S-transferase K00799 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002547 321.0
SRD3_k127_7123533_34 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006249 301.0
SRD3_k127_7123533_35 Cell Wall Hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001132 299.0
SRD3_k127_7123533_36 import inner membrane translocase, subunit Tim44 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001328 282.0
SRD3_k127_7123533_37 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005085 276.0
SRD3_k127_7123533_38 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000006122 255.0
SRD3_k127_7123533_39 CytOchrome o ubiquinol oxidase K02276,K02299 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000008777 258.0
SRD3_k127_7123533_4 Belongs to the transketolase family K00615 - 2.2.1.1 2.6e-311 966.0
SRD3_k127_7123533_40 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001165 267.0
SRD3_k127_7123533_41 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002754 256.0
SRD3_k127_7123533_42 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003446 240.0
SRD3_k127_7123533_43 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000000000000000000000001282 239.0
SRD3_k127_7123533_44 Methyltransferase fkbm family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001878 244.0
SRD3_k127_7123533_45 Prolyl 4-hydroxylase alpha subunit homologues. K00472 - 1.14.11.2 0.000000000000000000000000000000000000000000000000000000000000000001254 239.0
SRD3_k127_7123533_46 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000000000000000000000000000000001258 237.0
SRD3_k127_7123533_47 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000000000000000001228 218.0
SRD3_k127_7123533_48 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000000000000000002546 217.0
SRD3_k127_7123533_49 Domain of unknown function (DUF4136) - - - 0.000000000000000000000000000000000000000000000000000000000003561 217.0
SRD3_k127_7123533_5 Belongs to the heme-copper respiratory oxidase family K02298 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009486,GO:0009987,GO:0015002,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0016491,GO:0022900,GO:0022904,GO:0031224,GO:0031226,GO:0034220,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0045333,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600 1.10.3.10 1.541e-310 963.0
SRD3_k127_7123533_50 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.00000000000000000000000000000000000000000000000000000000003563 210.0
SRD3_k127_7123533_51 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000000000000000000000000000001119 181.0
SRD3_k127_7123533_52 5-formyltetrahydrofolate cyclo-ligase K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000003819 167.0
SRD3_k127_7123533_53 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000008812 161.0
SRD3_k127_7123533_54 Prokaryotic Cytochrome C oxidase subunit IV K02300 - - 0.00000000000000000000000000000000000002541 150.0
SRD3_k127_7123533_55 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000000000000004616 135.0
SRD3_k127_7123533_56 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.0000000000000000000000000000000002704 134.0
SRD3_k127_7123533_57 protein conserved in bacteria - - - 0.000000000000000000000000000000000774 136.0
SRD3_k127_7123533_58 Binds directly to 16S ribosomal RNA K02968 - - 0.000000000000000000000000000001891 121.0
SRD3_k127_7123533_59 - - - - 0.000000000000000000000000004412 116.0
SRD3_k127_7123533_6 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 4.443e-248 772.0
SRD3_k127_7123533_60 PFAM Exopolysaccharide synthesis ExoD - - - 0.000000000000000000000000203 115.0
SRD3_k127_7123533_61 Prolyl oligopeptidase - - - 0.000000000000000000000004479 104.0
SRD3_k127_7123533_62 ATPase with chaperone activity K07391 - - 0.0000000000000000003664 89.0
SRD3_k127_7123533_63 Protein of unknown function (DUF2842) - - - 0.000000000000000001863 88.0
SRD3_k127_7123533_64 - - - - 0.00000000000005015 76.0
SRD3_k127_7123533_65 DnaJ molecular chaperone homology domain - - - 0.000004097 57.0
SRD3_k127_7123533_7 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 2.76e-235 743.0
SRD3_k127_7123533_8 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 3.566e-226 711.0
SRD3_k127_7123533_9 5-aminolevulinic acid synthase K00643 - 2.3.1.37 4.527e-223 695.0
SRD3_k127_722270_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 1.391e-309 956.0
SRD3_k127_722270_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 4.786e-194 615.0
SRD3_k127_722270_10 Biopolymer transport protein K03559 - - 0.000000000000000000000000000000001116 134.0
SRD3_k127_722270_11 Belongs to the peptidase S1C family K04771 - 3.4.21.107 0.00000000006928 74.0
SRD3_k127_722270_12 - - - - 0.000000004419 62.0
SRD3_k127_722270_2 Chloride channel K03281 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 605.0
SRD3_k127_722270_3 Phytanoyl-CoA dioxygenase (PhyH) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002414 419.0
SRD3_k127_722270_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 387.0
SRD3_k127_722270_5 Bacterial regulatory helix-turn-helix protein, lysR family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001678 344.0
SRD3_k127_722270_6 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007137 279.0
SRD3_k127_722270_7 Biopolymer transport protein K03559 - - 0.000000000000000000000000000000000000000000000000000004632 193.0
SRD3_k127_722270_8 Biopolymer K03559 - - 0.00000000000000000000000000000000000000000000000000001347 193.0
SRD3_k127_722270_9 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000001982 158.0
SRD3_k127_746200_0 peptidase S9 K01278 - 3.4.14.5 4.615e-315 979.0
SRD3_k127_746200_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 2.811e-253 785.0
SRD3_k127_746200_10 Alkyl hydroperoxide reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004518 251.0
SRD3_k127_746200_11 Predicted integral membrane protein (DUF2189) - - - 0.000000000000000000000000000000000000000000000000000000000000000002967 236.0
SRD3_k127_746200_12 L,D-transpeptidase catalytic domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000001335 218.0
SRD3_k127_746200_13 - - - - 0.000000000000000000000000000000000000000000000000000000002155 213.0
SRD3_k127_746200_14 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000000000000000000000000805 201.0
SRD3_k127_746200_15 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.000000000000000000000000000002345 120.0
SRD3_k127_746200_16 - - - - 0.0000000000000007239 86.0
SRD3_k127_746200_2 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004776 624.0
SRD3_k127_746200_3 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 601.0
SRD3_k127_746200_4 Putative 2OG-Fe(II) oxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002063 402.0
SRD3_k127_746200_5 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 340.0
SRD3_k127_746200_6 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005566 325.0
SRD3_k127_746200_7 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 319.0
SRD3_k127_746200_8 Lysylphosphatidylglycerol synthase TM region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008354 298.0
SRD3_k127_746200_9 Prolyl 4-hydroxylase alpha subunit homologues. K07336 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000295 278.0
SRD3_k127_870336_0 peptidase S9 K01354 - 3.4.21.83 0.0 1015.0
SRD3_k127_870336_1 aminopeptidase K01262 - 3.4.11.9 3.379e-299 926.0
SRD3_k127_870336_10 Aldolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 444.0
SRD3_k127_870336_11 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005222 423.0
SRD3_k127_870336_12 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 354.0
SRD3_k127_870336_13 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001208 343.0
SRD3_k127_870336_14 2-dehydropantoate 2-reductase K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 325.0
SRD3_k127_870336_15 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 317.0
SRD3_k127_870336_16 Large exoproteins involved in heme utilization or adhesion - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 336.0
SRD3_k127_870336_17 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 305.0
SRD3_k127_870336_18 maleylacetoacetate isomerase K01800,K01801 - 5.2.1.2,5.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000105 280.0
SRD3_k127_870336_19 Inositol monophosphatase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004225 260.0
SRD3_k127_870336_2 Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate K00451 - 1.13.11.5 3.062e-218 683.0
SRD3_k127_870336_20 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 - 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000762 253.0
SRD3_k127_870336_21 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000001391 242.0
SRD3_k127_870336_22 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000005898 237.0
SRD3_k127_870336_23 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000247 235.0
SRD3_k127_870336_24 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496 - 3.5.4.19 0.0000000000000000000000000000000000000000000000000000000000000000005533 237.0
SRD3_k127_870336_25 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000004656 201.0
SRD3_k127_870336_26 thioesterase K07107 - - 0.00000000000000000000000000000000000000000000000000002918 194.0
SRD3_k127_870336_27 Domain of unknown function (DU1801) - - - 0.00000000000000000000000000000000000000000000000000005251 193.0
SRD3_k127_870336_28 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000000000000000000002513 183.0
SRD3_k127_870336_29 PFAM blue (type 1) copper domain protein - - - 0.0000000000000000000000000000000000000000000000152 177.0
SRD3_k127_870336_3 Imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 6.252e-215 680.0
SRD3_k127_870336_30 PFAM histidine triad (HIT) protein K02503 - - 0.000000000000000000000000000000000000000007575 162.0
SRD3_k127_870336_31 Periplasmic Protein - - - 0.000000000000000000000000000001257 130.0
SRD3_k127_870336_32 Trp repressor protein - - - 0.0000000000000000000000000039 113.0
SRD3_k127_870336_33 KTSC domain - - - 0.00000000000002188 75.0
SRD3_k127_870336_36 - - - - 0.0000009819 52.0
SRD3_k127_870336_37 - - - - 0.0001701 52.0
SRD3_k127_870336_4 Putative diguanylate phosphodiesterase - - - 1.621e-203 658.0
SRD3_k127_870336_5 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004206 595.0
SRD3_k127_870336_6 Fumarylacetoacetase K01555 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 578.0
SRD3_k127_870336_7 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008349 514.0
SRD3_k127_870336_8 Dehydrogenase K00101 - 1.1.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002049 501.0
SRD3_k127_870336_9 Threonine aldolase K01620 - 4.1.2.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 464.0
SRD3_k127_94566_0 chemotaxis protein K03407 - 2.7.13.3 0.0 1064.0
SRD3_k127_94566_1 Elongation factor G, domain IV K02355 - - 2.948e-289 902.0
SRD3_k127_94566_10 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008676 504.0
SRD3_k127_94566_11 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008186 490.0
SRD3_k127_94566_12 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 469.0
SRD3_k127_94566_13 Major facilitator superfamily K07552 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 447.0
SRD3_k127_94566_14 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000726 437.0
SRD3_k127_94566_15 ABC transporter K01990 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0009314,GO:0009628,GO:0010165,GO:0010212,GO:0016020,GO:0044464,GO:0050896,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009661 432.0
SRD3_k127_94566_16 N-acetylmuramoyl-L-alanine amidase K01447 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009902 416.0
SRD3_k127_94566_17 COG0189 Glutathione synthase Ribosomal protein S6 modification enzyme (glutaminyl transferase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001307 418.0
SRD3_k127_94566_18 COG1352 Methylase of chemotaxis methyl-accepting proteins K00575 - 2.1.1.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005506 419.0
SRD3_k127_94566_19 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 403.0
SRD3_k127_94566_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 1.687e-241 753.0
SRD3_k127_94566_20 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 407.0
SRD3_k127_94566_21 2-methylthioadenine K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009097 409.0
SRD3_k127_94566_22 Transport permease protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 367.0
SRD3_k127_94566_23 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003972 351.0
SRD3_k127_94566_24 Virulence factor BrkB K07058 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004777 342.0
SRD3_k127_94566_25 PFAM polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007561 332.0
SRD3_k127_94566_26 Phage shock protein A K03969 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006039 312.0
SRD3_k127_94566_27 Belongs to the SIS family. GutQ KpsF subfamily K06041 - 5.3.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 317.0
SRD3_k127_94566_28 Histidine phosphotransferase C-terminal domain K13588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005684 310.0
SRD3_k127_94566_29 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004696 301.0
SRD3_k127_94566_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 9.464e-199 625.0
SRD3_k127_94566_30 probably involved in intracellular septation K06190 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000661 304.0
SRD3_k127_94566_31 DnaJ molecular chaperone homology domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000443 259.0
SRD3_k127_94566_32 Urate oxidase N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001731 254.0
SRD3_k127_94566_33 3-deoxy-manno-octulosonate cytidylyltransferase K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000004097 260.0
SRD3_k127_94566_34 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004385 250.0
SRD3_k127_94566_35 cheY-homologous receiver domain K03413 - - 0.000000000000000000000000000000000000000000000000000000000000000000001803 236.0
SRD3_k127_94566_36 sugar phosphatases of the HAD superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000001103 239.0
SRD3_k127_94566_37 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000000000000000000000000001434 214.0
SRD3_k127_94566_38 phosphoribosyltransferase K00769,K07101 - 2.4.2.22 0.00000000000000000000000000000000000000000000000000000002379 200.0
SRD3_k127_94566_39 SufE protein probably involved in Fe-S center assembly K02426 - - 0.00000000000000000000000000000000000000000000000000000003086 199.0
SRD3_k127_94566_4 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 2.251e-197 623.0
SRD3_k127_94566_40 Two component signalling adaptor domain K03408 - - 0.00000000000000000000000000000000000000000000000000000003546 202.0
SRD3_k127_94566_41 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000000000000000612 195.0
SRD3_k127_94566_42 Mitochondrial fission ELM1 K07276 - - 0.00000000000000000000000000000000000000000000008471 182.0
SRD3_k127_94566_43 PspC domain K03973 - - 0.0000000000000000000000000000000000000000000001914 173.0
SRD3_k127_94566_44 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000000000000000104 145.0
SRD3_k127_94566_45 Tetratricopeptide repeats - - - 0.0000000000000000000000000000000001603 141.0
SRD3_k127_94566_46 transcriptional K05800 - - 0.000000000000000000000000000000001366 138.0
SRD3_k127_94566_47 Phage shock protein B K03970 - - 0.00000000000000000000000000000001159 128.0
SRD3_k127_94566_48 - - - - 0.000000000000000000000000000005503 124.0
SRD3_k127_94566_49 - - - - 0.00000000000000000000000000531 113.0
SRD3_k127_94566_5 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K21053 - 3.5.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 554.0
SRD3_k127_94566_50 - - - - 0.000000000000000007002 89.0
SRD3_k127_94566_52 - - - - 0.000000005472 61.0
SRD3_k127_94566_54 - - - - 0.00001748 50.0
SRD3_k127_94566_6 Flavin containing amine oxidoreductase K00274 - 1.4.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 562.0
SRD3_k127_94566_7 Luciferase-like monooxygenase K17228 - 1.14.14.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007066 546.0
SRD3_k127_94566_8 RNA polymerase sigma K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007106 531.0
SRD3_k127_94566_9 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K03974 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 524.0
SRD3_k127_969310_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1364.0
SRD3_k127_969310_1 Ferrous iron transport protein B K04759 - - 5.376e-276 861.0
SRD3_k127_969310_10 Asp-tRNAAsn Glu-tRNAGln amidotransferase A subunit K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 581.0
SRD3_k127_969310_11 histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 569.0
SRD3_k127_969310_12 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 552.0
SRD3_k127_969310_13 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 542.0
SRD3_k127_969310_14 Malate synthase K01637,K01638 GO:0003674,GO:0003824,GO:0004451,GO:0004474,GO:0005975,GO:0006081,GO:0006082,GO:0006097,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009987,GO:0010259,GO:0016740,GO:0016746,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0032501,GO:0032502,GO:0032787,GO:0043436,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046487,GO:0046912,GO:0048856,GO:0071704 2.3.3.9,4.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 538.0
SRD3_k127_969310_15 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009179 523.0
SRD3_k127_969310_16 peptidase S10 serine carboxypeptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007914 533.0
SRD3_k127_969310_17 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000027 515.0
SRD3_k127_969310_18 DEAD DEAH box helicase K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005722 511.0
SRD3_k127_969310_19 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007647 502.0
SRD3_k127_969310_2 ATP-dependent DNA ligase K10747 - 6.5.1.1,6.5.1.6,6.5.1.7 1.344e-260 811.0
SRD3_k127_969310_20 protein conserved in bacteria K09919 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 492.0
SRD3_k127_969310_21 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 481.0
SRD3_k127_969310_22 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007838 478.0
SRD3_k127_969310_23 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006283 465.0
SRD3_k127_969310_24 NADH flavin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 437.0
SRD3_k127_969310_25 COG0330 Membrane protease subunits, stomatin prohibitin homologs - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002028 432.0
SRD3_k127_969310_26 ABC-type (Unclassified) transport system, ATPase component K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008231 419.0
SRD3_k127_969310_27 MTH538 TIR-like domain (DUF1863) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007197 437.0
SRD3_k127_969310_28 endonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001725 366.0
SRD3_k127_969310_29 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 364.0
SRD3_k127_969310_3 protease with the C-terminal PDZ - - - 4.252e-249 785.0
SRD3_k127_969310_30 Cold shock K03704 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 347.0
SRD3_k127_969310_31 Belongs to the short-chain dehydrogenases reductases (SDR) family K05886 - 1.1.1.276 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 349.0
SRD3_k127_969310_32 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 343.0
SRD3_k127_969310_33 Asparaginase K13051 - 3.4.19.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 342.0
SRD3_k127_969310_34 Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety K00453 GO:0003674,GO:0003824,GO:0004833,GO:0005488,GO:0006082,GO:0006520,GO:0006568,GO:0006569,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009987,GO:0016043,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019441,GO:0019752,GO:0020037,GO:0022607,GO:0034641,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0043436,GO:0043933,GO:0044085,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0046218,GO:0046395,GO:0046483,GO:0046700,GO:0046906,GO:0048037,GO:0051213,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0070189,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 334.0
SRD3_k127_969310_35 3'-5' exonuclease K03684 - 3.1.13.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000657 334.0
SRD3_k127_969310_36 Riboflavin synthase K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003879 290.0
SRD3_k127_969310_37 DNA mediated transformation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003705 278.0
SRD3_k127_969310_38 RpsU-divergently transcribed K18587 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003889 252.0
SRD3_k127_969310_39 endoribonuclease - - - 0.000000000000000000000000000000000000000000000000000000000000000000002399 240.0
SRD3_k127_969310_4 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916 - 6.3.1.5 2.953e-232 730.0
SRD3_k127_969310_40 EamA-like transporter family K15270 - - 0.00000000000000000000000000000000000000000000000000000000000000000002219 243.0
SRD3_k127_969310_41 protein conserved in bacteria K09774 - - 0.000000000000000000000000000000000000000000000000000000000000000788 226.0
SRD3_k127_969310_42 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000000000000000000000000000000001231 224.0
SRD3_k127_969310_43 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000000000000000000000000000000000478 214.0
SRD3_k127_969310_44 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000008797 209.0
SRD3_k127_969310_45 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000000000014 207.0
SRD3_k127_969310_46 Protein conserved in bacteria K11719 - - 0.0000000000000000000000000000000000000000000000000000000001388 220.0
SRD3_k127_969310_47 Uncharacterized ACR, COG1399 - - - 0.000000000000000000000000000000000000000000000000000000005267 205.0
SRD3_k127_969310_48 Protein of unknown function (DUF1345) - - - 0.0000000000000000000000000000000000000000000000000000005467 200.0
SRD3_k127_969310_49 Acyl-CoA hydrolase K10806 - - 0.00000000000000000000000000000000000000000000000000000954 192.0
SRD3_k127_969310_5 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 3.868e-219 685.0
SRD3_k127_969310_50 Small protein A (tmRNA-binding) - - - 0.00000000000000000000000000000000000000000000000003405 183.0
SRD3_k127_969310_51 Small Multidrug Resistance protein K11741 - - 0.0000000000000000000000000000000000000000000001572 169.0
SRD3_k127_969310_52 response regulator K11443 - - 0.000000000000000000000000000000000000000000004087 169.0
SRD3_k127_969310_53 Domain of unknown function (DUF4167) - - - 0.000000000000000000000000000000000000000001056 164.0
SRD3_k127_969310_54 CBS domain - - - 0.000000000000000000000000000000000000000001965 161.0
SRD3_k127_969310_55 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000002163 168.0
SRD3_k127_969310_56 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000002642 143.0
SRD3_k127_969310_57 - - - - 0.000000000000000000000000000000001275 147.0
SRD3_k127_969310_58 Ubiquinol-cytochrome C chaperone K17662 - - 0.000000000000000000000000000000002018 138.0
SRD3_k127_969310_59 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000000000000006952 128.0
SRD3_k127_969310_6 Outer membrane receptor proteins, mostly Fe transport - - - 2.647e-211 687.0
SRD3_k127_969310_60 COG2335 Secreted and surface protein containing fasciclin-like repeats - - - 0.000000000000000000000000000004277 128.0
SRD3_k127_969310_61 Fe2 transport system protein A K04758 - - 0.000000000000000000000000114 108.0
SRD3_k127_969310_62 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000000000000000000002949 107.0
SRD3_k127_969310_63 - - - - 0.00000000000000000004297 91.0
SRD3_k127_969310_64 Protein of unknown function (DUF3572) - - - 0.0000000000000000001292 91.0
SRD3_k127_969310_65 - - - - 0.0000000000000000002972 89.0
SRD3_k127_969310_66 Serine aminopeptidase, S33 - - - 0.000000000000000001549 88.0
SRD3_k127_969310_68 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K07032 - - 0.0000000000000008983 78.0
SRD3_k127_969310_69 Flp pilus assembly protein, pilin Flp K02651 - - 0.000000000000004366 76.0
SRD3_k127_969310_7 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 1.248e-209 656.0
SRD3_k127_969310_70 Uncharacterized protein conserved in bacteria (DUF2199) - - - 0.000000000005184 71.0
SRD3_k127_969310_72 - - - - 0.0000000000369 70.0
SRD3_k127_969310_8 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 6.795e-202 634.0
SRD3_k127_969310_9 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 602.0