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Overview

ID MAG03792
Name SYD3_bin.22
Sample SMP0096
Taxonomy
Kingdom Bacteria
Phylum Patescibacteriota
Class Patescibacteriia
Order SG8-24
Family DYFX01
Genus DYFX01
Species
Assembly information
Completeness (%) 76.96
Contamination (%) 0.21
GC content (%) 67.0
N50 (bp) 19,463
Genome size (bp) 1,003,854

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes709

Gene name Description KEGG GOs EC E-value Score Sequence
SYD3_k127_10144152_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1295.0
SYD3_k127_10144152_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0030880,GO:0032991,GO:0040007,GO:0044424,GO:0044464,GO:0061695,GO:0071944,GO:1902494,GO:1990234 2.7.7.6 0.0 1200.0
SYD3_k127_10144152_10 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000001065 190.0
SYD3_k127_10144152_11 Mg2 transporter-C family protein K07507 - - 0.00000000000000000000000000000004969 131.0
SYD3_k127_10144152_12 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.000000000000000000000000000000132 128.0
SYD3_k127_10144152_13 Putative RNA methylase family UPF0020 - - - 0.00000000000000000000000000008048 130.0
SYD3_k127_10144152_14 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000003664 89.0
SYD3_k127_10144152_15 COG NOG14552 non supervised orthologous group - - - 0.000000000000000002672 87.0
SYD3_k127_10144152_16 Protein of unknown function (DUF1761) - - - 0.000000000000002107 81.0
SYD3_k127_10144152_17 phosphorelay signal transduction system K02657 - - 0.000000000000002817 80.0
SYD3_k127_10144152_18 - - - - 0.00000000000001724 74.0
SYD3_k127_10144152_19 - - - - 0.00000000000002418 72.0
SYD3_k127_10144152_2 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005503 504.0
SYD3_k127_10144152_20 - - - - 0.000000000002918 70.0
SYD3_k127_10144152_21 - - - - 0.00000000001564 65.0
SYD3_k127_10144152_22 - - - - 0.0000000000526 64.0
SYD3_k127_10144152_23 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000001139 69.0
SYD3_k127_10144152_24 SMART helix-turn-helix domain protein K15539 - - 0.0000001398 61.0
SYD3_k127_10144152_25 - - - - 0.0000004734 52.0
SYD3_k127_10144152_26 - - - - 0.0000007238 51.0
SYD3_k127_10144152_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 442.0
SYD3_k127_10144152_4 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008947 411.0
SYD3_k127_10144152_5 tRNA synthetases class II (D, K and N) K04568 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 336.0
SYD3_k127_10144152_6 Transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000002157 214.0
SYD3_k127_10144152_7 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000003275 196.0
SYD3_k127_10144152_8 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000002017 177.0
SYD3_k127_10144152_9 cellulase activity - - - 0.0000000000000000000000000000000000000000000002616 189.0
SYD3_k127_10199232_0 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007126 344.0
SYD3_k127_10199232_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000004936 196.0
SYD3_k127_10199232_2 GIY-YIG catalytic domain K07461 - - 0.000000000000000000000005385 104.0
SYD3_k127_10199232_3 Belongs to the peptidase M16 family - - - 0.0000000000000000000006199 99.0
SYD3_k127_10199232_4 HAD-hyrolase-like K01091 - 3.1.3.18 0.0000000000000008575 88.0
SYD3_k127_10199232_5 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.0000000002919 64.0
SYD3_k127_10199232_6 Tetratricopeptide repeat - - - 0.00000263 59.0
SYD3_k127_10199232_7 - - - - 0.00002199 52.0
SYD3_k127_10199232_8 YecM protein K09907 - - 0.0003696 50.0
SYD3_k127_10324228_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 8.677e-203 653.0
SYD3_k127_10324228_1 Magnesium chelatase, subunit ChlI C-terminal K06400,K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 540.0
SYD3_k127_10324228_2 PFAM sodium hydrogen exchanger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007077 368.0
SYD3_k127_10324228_3 NYN domain - - - 0.0000000000000000000000000000000000000000000000000000001024 200.0
SYD3_k127_10324228_4 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000002673 192.0
SYD3_k127_10324228_5 Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000003572 186.0
SYD3_k127_10324228_6 TIGRFAM Sporulation protein YteA - - - 0.000000000001884 72.0
SYD3_k127_10324228_7 Belongs to the peptidase S26 family - - - 0.0000000003625 66.0
SYD3_k127_10324228_8 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000033 62.0
SYD3_k127_10338023_0 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007052 510.0
SYD3_k127_10338023_1 Oligoendopeptidase f K01283,K08602 - 3.4.15.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 360.0
SYD3_k127_10338023_2 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005223 279.0
SYD3_k127_10338023_3 Tryptophanyl-tRNA synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001795 248.0
SYD3_k127_10338023_4 Thioredoxin - - - 0.000000000000000000000000000000000001216 154.0
SYD3_k127_10338023_5 Preprotein translocase SecG subunit K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000006527 60.0
SYD3_k127_10338023_6 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.00000007006 64.0
SYD3_k127_10481600_0 Heat shock 70 kDa protein K04043 - - 1.973e-266 833.0
SYD3_k127_10481600_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686,K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 341.0
SYD3_k127_10481600_2 IMG reference gene - - - 0.0000000003095 72.0
SYD3_k127_1051327_0 helicase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002582 471.0
SYD3_k127_1051327_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 GO:0002097,GO:0002098,GO:0002143,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129 374.0
SYD3_k127_1051327_10 Parallel beta-helix repeats - - - 0.00000001037 66.0
SYD3_k127_1051327_11 - K00960 - 2.7.7.6 0.000001059 62.0
SYD3_k127_1051327_12 Alpha beta hydrolase - - - 0.000005896 56.0
SYD3_k127_1051327_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030312,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002172 304.0
SYD3_k127_1051327_3 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007203 280.0
SYD3_k127_1051327_4 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006173 263.0
SYD3_k127_1051327_5 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K03074,K12257 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0042886,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000002344 226.0
SYD3_k127_1051327_6 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.00000000000000000000000000000000000000000008205 171.0
SYD3_k127_1051327_7 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000002944 86.0
SYD3_k127_1051327_8 ADP-ribosylglycohydrolase - - - 0.00000000000005707 84.0
SYD3_k127_1051327_9 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.00000000009922 72.0
SYD3_k127_10633385_0 penicillin-binding protein K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007626 537.0
SYD3_k127_10633385_1 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003279 394.0
SYD3_k127_10633385_3 PAS domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000109 165.0
SYD3_k127_10633385_4 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.0000000000000000000000000000000000000001791 167.0
SYD3_k127_10633385_5 Metalloenzyme superfamily - - - 0.0000000000000004647 90.0
SYD3_k127_10633385_6 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000001603 58.0
SYD3_k127_10633385_7 PFAM Tetratricopeptide repeat - - - 0.00004858 57.0
SYD3_k127_10699765_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 8.237e-201 659.0
SYD3_k127_10699765_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001684 250.0
SYD3_k127_10699765_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000002006 228.0
SYD3_k127_10699765_3 DoxX K15977 - - 0.00000000000000005009 87.0
SYD3_k127_10699765_4 COG0330 Membrane protease subunits stomatin prohibitin homologs - - - 0.00000000289 70.0
SYD3_k127_10699765_5 Membrane protein insertase, YidC Oxa1 family K03217 - - 0.0000005311 61.0
SYD3_k127_1145710_0 UTP-glucose-1-phosphate uridylyltransferase K00963 - 2.7.7.9 0.000000000000000000000000000000000000000000000000000000000000000000000000001406 265.0
SYD3_k127_1145710_1 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000003487 95.0
SYD3_k127_141752_0 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000001272 221.0
SYD3_k127_141752_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000001824 164.0
SYD3_k127_141752_2 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.0000000000000006955 83.0
SYD3_k127_141752_3 SMART Peptidase A22, presenilin signal peptide - - - 0.0005037 51.0
SYD3_k127_1434646_0 Belongs to the peptidase M48B family K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005922 276.0
SYD3_k127_1434646_1 acetyltransferases and hydrolases with the alpha beta hydrolase fold K00650 - 2.3.1.43 0.000000000000000000000005772 108.0
SYD3_k127_1434646_2 - - - - 0.00000000000000001978 90.0
SYD3_k127_1434646_3 ATPase AAA-2 domain protein K03696 - - 0.00000000000001228 82.0
SYD3_k127_1447092_0 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000005943 91.0
SYD3_k127_1447092_1 - - - - 0.0005631 49.0
SYD3_k127_1447092_2 VanW like protein K18346 - - 0.0008092 49.0
SYD3_k127_1456583_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.791e-263 836.0
SYD3_k127_1456583_1 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 612.0
SYD3_k127_1456583_2 PFAM type II secretion system protein E K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 365.0
SYD3_k127_1456583_3 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000002128 243.0
SYD3_k127_1456583_4 Zn-dependent hydrolases of the - - - 0.00000000000000000000000000000000000407 149.0
SYD3_k127_1456583_5 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.000000000000000000000000000412 118.0
SYD3_k127_1456583_6 Belongs to the bacterial ribosomal protein bL32 family K02911 GO:0003674,GO:0003735,GO:0005198 - 0.0000000004463 62.0
SYD3_k127_1456583_7 Diacylglycerol kinase catalytic domain - - - 0.000000004641 68.0
SYD3_k127_1456583_8 Protein of unknown function (DUF1189) - - - 0.00004945 55.0
SYD3_k127_1597611_0 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.00000000000000000000000000000000000001336 156.0
SYD3_k127_1597611_1 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.00000005267 64.0
SYD3_k127_1597611_2 -O-antigen K18814 - - 0.00002677 57.0
SYD3_k127_1597611_3 biosynthesis protein - - - 0.0001528 51.0
SYD3_k127_1597611_4 Glycosyltransferase Family 4 - - - 0.0005216 51.0
SYD3_k127_1597611_5 domain, Protein - - - 0.0009758 51.0
SYD3_k127_1711201_0 Belongs to the GPI family K01810 - 5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 346.0
SYD3_k127_1711201_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000006635 257.0
SYD3_k127_1711201_10 Chlorophyllase K01061 - 3.1.1.45 0.000000000000000000000000000000006697 134.0
SYD3_k127_1711201_11 PFAM glycosyl transferase family 2 - - - 0.0000000000000000000000008466 115.0
SYD3_k127_1711201_12 lytic transglycosylase activity K03194 - - 0.00000000000000000006752 105.0
SYD3_k127_1711201_13 hydrolase, family 25 - - - 0.000000000000001194 90.0
SYD3_k127_1711201_14 - - - - 0.0000000000002014 80.0
SYD3_k127_1711201_15 O-antigen ligase like membrane protein - - - 0.00002369 58.0
SYD3_k127_1711201_2 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000002605 231.0
SYD3_k127_1711201_3 PDZ domain (Also known as DHR or GLGF) - - - 0.00000000000000000000000000000000000000000000000000000000796 212.0
SYD3_k127_1711201_4 PFAM glycosyl transferase family 2 K07011 - - 0.00000000000000000000000000000000000000000000000000000005321 210.0
SYD3_k127_1711201_5 PFAM blue (type 1) copper domain protein K22144 - 3.2.1.35 0.0000000000000000000000000000000000000000000000000000002682 220.0
SYD3_k127_1711201_6 Extradiol ring-cleavage dioxygenase class III protein subunit B K06990,K09141 - - 0.00000000000000000000000000000000000000000000000001304 190.0
SYD3_k127_1711201_7 glycosyl transferase group 1 K13668 - 2.4.1.346 0.00000000000000000000000000000000000000002216 169.0
SYD3_k127_1711201_8 PFAM cyclase family protein K07130 - 3.5.1.9 0.000000000000000000000000000000000000001505 154.0
SYD3_k127_1711201_9 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000004855 141.0
SYD3_k127_1789872_0 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0006355,GO:0006508,GO:0006515,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042623,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000004924 205.0
SYD3_k127_1789872_1 domain protein K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000004597 169.0
SYD3_k127_1799187_0 elongation factor Tu domain 2 protein K06207 - - 5.019e-216 686.0
SYD3_k127_1799187_1 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.000000000000000000000000001222 120.0
SYD3_k127_1799187_2 Protein of unknown function (DUF1059) - - - 0.00009747 47.0
SYD3_k127_1911184_0 Metallo-beta-lactamase domain protein K07576 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 364.0
SYD3_k127_1911184_1 beta-glucosidase activity K05350 - 3.2.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003799 345.0
SYD3_k127_1911184_10 Domain of unknown function (DUF378) K09779 - - 0.0000000005453 64.0
SYD3_k127_1911184_11 - - - - 0.000000002646 64.0
SYD3_k127_1911184_12 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 0.000002573 59.0
SYD3_k127_1911184_14 response regulator receiver - - - 0.0001133 51.0
SYD3_k127_1911184_2 Acts as a magnesium transporter K06213 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005498 274.0
SYD3_k127_1911184_3 PFAM UMUC domain protein DNA-repair protein K02346,K03502 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000002351 209.0
SYD3_k127_1911184_4 Sulfite exporter TauE/SafE K07090 - - 0.00000000000000000000000000000000000000000000000000005775 201.0
SYD3_k127_1911184_5 negative regulation of transcription, DNA-templated - - - 0.0000000000000000000000000000000000000000005376 176.0
SYD3_k127_1911184_6 VIT family - - - 0.000000000000000000000000000001383 132.0
SYD3_k127_1911184_8 protein with SCP PR1 domains - - - 0.000000000000000000001739 107.0
SYD3_k127_1911184_9 Major Facilitator - - - 0.00000000000000000000967 105.0
SYD3_k127_1934145_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005034 311.0
SYD3_k127_1934145_1 Transketolase, thiamine diphosphate binding domain K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001686 280.0
SYD3_k127_1934145_2 Transketolase, pyrimidine binding domain K00615 - 2.2.1.1 0.0000000000000000000000000000000729 131.0
SYD3_k127_1934145_3 Ribulose-phosphate 3 epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.0000000000000000000000000000001191 134.0
SYD3_k127_1934145_4 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.000000000000000000000000000001409 129.0
SYD3_k127_207313_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 3.877e-318 998.0
SYD3_k127_207313_1 nucleotide-excision repair K03702,K08999 - - 3.743e-264 829.0
SYD3_k127_207313_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000001347 246.0
SYD3_k127_2944213_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002997 330.0
SYD3_k127_2944213_1 Methicillin resistance protein - - - 0.0000000000000000000000000000000000000000000009158 186.0
SYD3_k127_2944213_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000129 136.0
SYD3_k127_2944213_3 Ferredoxin - - - 0.0000000000005984 72.0
SYD3_k127_295123_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 8.204e-276 876.0
SYD3_k127_295123_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005903 494.0
SYD3_k127_295123_2 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 GO:0000166,GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0004354,GO:0005488,GO:0006082,GO:0006103,GO:0006520,GO:0006536,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016639,GO:0019752,GO:0022607,GO:0034214,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0048037,GO:0050661,GO:0050662,GO:0051186,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070401,GO:0070402,GO:0070403,GO:0070404,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901605 1.4.1.2,1.4.1.3,1.4.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 397.0
SYD3_k127_295123_3 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 348.0
SYD3_k127_295123_4 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000003475 168.0
SYD3_k127_295123_5 Belongs to the thioredoxin family K03671 - - 0.00000000000000000000000000000000000002442 145.0
SYD3_k127_295123_6 TIGRFAM DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000002863 139.0
SYD3_k127_295123_7 ComEC Rec2-related protein K02238 - - 0.00000000000000000000000003894 120.0
SYD3_k127_295123_8 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.00000546 59.0
SYD3_k127_3212238_0 Malic enzyme, NAD binding domain K00027 - 1.1.1.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 438.0
SYD3_k127_3212238_1 PFAM SNARE associated Golgi protein K03975 - - 0.000000000000000000000000000000000000000000000000000000000000000000001203 241.0
SYD3_k127_3212238_10 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000002103 121.0
SYD3_k127_3212238_11 Histidine kinase - - - 0.000000000000000000000000002186 128.0
SYD3_k127_3212238_12 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000008817 98.0
SYD3_k127_3212238_13 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000001015 98.0
SYD3_k127_3212238_2 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000004571 245.0
SYD3_k127_3212238_3 beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000001389 205.0
SYD3_k127_3212238_4 EVE domain - - - 0.000000000000000000000000000000000000000000000000002532 189.0
SYD3_k127_3212238_5 recombinase XerD K04763 - - 0.00000000000000000000000000000000000000000000000001478 192.0
SYD3_k127_3212238_6 Flotillin K07192 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000005789 200.0
SYD3_k127_3212238_7 orotidine-5'-phosphate decarboxylase activity K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.0000000000000000000000000000000000000000000000006878 185.0
SYD3_k127_3212238_8 NYN domain - - - 0.000000000000000000000000000000007929 131.0
SYD3_k127_3212238_9 Endonuclease Exonuclease Phosphatase - - - 0.0000000000000000000000000008279 128.0
SYD3_k127_344776_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 303.0
SYD3_k127_344776_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000004169 238.0
SYD3_k127_344776_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000001231 228.0
SYD3_k127_344776_3 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356,K03503 - 3.4.21.88 0.000000000000000000000000000000000000000000000006094 178.0
SYD3_k127_344776_4 Protein tyrosine kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000001037 147.0
SYD3_k127_344776_5 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.000000000000000000000000000006329 138.0
SYD3_k127_344776_6 Fructosamine kinase - - - 0.0002199 52.0
SYD3_k127_3619215_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006907 533.0
SYD3_k127_3619215_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001758 466.0
SYD3_k127_3619215_2 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 454.0
SYD3_k127_3619215_3 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 GO:0000166,GO:0003674,GO:0003824,GO:0004365,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016620,GO:0016903,GO:0036094,GO:0043891,GO:0048037,GO:0050662,GO:0051287,GO:0055114,GO:0097159,GO:1901265,GO:1901363 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 395.0
SYD3_k127_3619215_4 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 350.0
SYD3_k127_3619215_5 Pyridine nucleotide-disulfide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000009376 188.0
SYD3_k127_3619215_6 metallophosphoesterase K07098 - - 0.000000000000000000000000000000000000004878 158.0
SYD3_k127_3619215_7 Protein of unknown function (DUF541) K09807 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000003825 130.0
SYD3_k127_3619215_8 Elongation factor TS K02357 GO:0001871,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005623,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0019538,GO:0030246,GO:0030247,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065 - 0.0000000004693 61.0
SYD3_k127_3785720_0 domain protein K20276 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001651 290.0
SYD3_k127_3785720_1 alginic acid biosynthetic process K20276 - - 0.00000000009941 76.0
SYD3_k127_3785720_2 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000121 64.0
SYD3_k127_3893670_0 cytochrome c biogenesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006766 304.0
SYD3_k127_3893670_1 PFAM ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005143 246.0
SYD3_k127_3893670_10 MacB-like periplasmic core domain K02004 - - 0.0000001027 58.0
SYD3_k127_3893670_11 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor region - - - 0.00004881 53.0
SYD3_k127_3893670_12 COG0739 Membrane proteins related to metalloendopeptidases - - - 0.0002384 51.0
SYD3_k127_3893670_2 tRNA (Guanine-1)-methyltransferase K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.000000000000000000000000000000000000000000000000000000000000000002682 234.0
SYD3_k127_3893670_3 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000004101 167.0
SYD3_k127_3893670_4 SMART PAS domain containing protein - - - 0.00000000000000000000000000000000000002954 166.0
SYD3_k127_3893670_5 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K01993,K02005,K07798,K15727 - - 0.00000000000000000000006531 114.0
SYD3_k127_3893670_6 - - - - 0.0000000000000000009753 95.0
SYD3_k127_3893670_7 Helix-turn-helix domain K07729 - - 0.000000000000002566 77.0
SYD3_k127_3893670_8 cell redox homeostasis K12057 - - 0.00000000002228 74.0
SYD3_k127_3893670_9 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.00000002165 67.0
SYD3_k127_3977656_0 Ribonucleoside-triphosphate reductase K21636 - 1.1.98.6 6.6e-275 856.0
SYD3_k127_3977656_1 Lipase maturation factor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002386 451.0
SYD3_k127_3977656_10 Glycosyltransferase Family 4 - - - 0.000001336 60.0
SYD3_k127_3977656_2 Nucleoside 2-deoxyribosyltransferase like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003714 278.0
SYD3_k127_3977656_3 GTP diphosphatase activity K03574,K17816 GO:0000003,GO:0001669,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006259,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007154,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008406,GO:0008413,GO:0008584,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022414,GO:0030141,GO:0030515,GO:0031090,GO:0031410,GO:0031668,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0035539,GO:0036219,GO:0042221,GO:0042262,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044713,GO:0044714,GO:0045137,GO:0046060,GO:0046061,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046546,GO:0046661,GO:0046686,GO:0046700,GO:0047429,GO:0047693,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0055086,GO:0061458,GO:0070013,GO:0071496,GO:0071704,GO:0071944,GO:0072521,GO:0072523,GO:0090304,GO:0097159,GO:0097223,GO:0097708,GO:0099503,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.6.1.55,3.6.1.56 0.000000000000000000000000000000000000000000000001204 179.0
SYD3_k127_3977656_4 - - - - 0.00000000000000000000000002348 120.0
SYD3_k127_3977656_5 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000008212 113.0
SYD3_k127_3977656_7 Immunoglobulin-like domain of bacterial spore germination - - - 0.0000000000000000002375 100.0
SYD3_k127_3977656_8 Radical SAM K04069 - 1.97.1.4 0.00000000009722 66.0
SYD3_k127_3977656_9 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01515 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019144,GO:0043167,GO:0043169,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0047631,GO:0050896 3.6.1.13 0.0000000366 63.0
SYD3_k127_4252343_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005103 397.0
SYD3_k127_4252343_1 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006415 306.0
SYD3_k127_4252343_2 Adenosine/AMP deaminase K01488 - 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000003301 253.0
SYD3_k127_4252343_3 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000002707 210.0
SYD3_k127_4252343_4 PFAM Metal-dependent phosphohydrolase, HD K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000003037 53.0
SYD3_k127_4311322_0 Arginyl-tRNA synthetase K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 437.0
SYD3_k127_4311322_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003189 365.0
SYD3_k127_4311322_10 Acetyltransferase (GNAT) family - - - 0.00005652 55.0
SYD3_k127_4311322_2 Participates in both transcription termination and antitermination K02600 - - 0.00000000000000000000000000000000000000000000000000000001384 207.0
SYD3_k127_4311322_3 protein histidine kinase activity K11383 - 2.7.13.3 0.000000000000000000000000000005892 136.0
SYD3_k127_4311322_4 Elongator protein 3 MiaB NifB K06936 - - 0.0000000000000000000005185 109.0
SYD3_k127_4311322_5 RNA recognition motif - - - 0.0000000000000000000007749 97.0
SYD3_k127_4311322_6 nucleic acid phosphodiester bond hydrolysis K07460 - - 0.000000000000000000002386 105.0
SYD3_k127_4311322_7 Ribosomal RNA adenine dimethylase - - - 0.000000000000004414 86.0
SYD3_k127_4311322_8 Integral membrane protein CcmA involved in cell shape determination - - - 0.000000000008133 79.0
SYD3_k127_4311322_9 lipid kinase, YegS Rv2252 BmrU family - - - 0.000002217 58.0
SYD3_k127_4344192_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007835 540.0
SYD3_k127_4344192_1 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 409.0
SYD3_k127_4344192_10 PFAM Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000002452 138.0
SYD3_k127_4344192_11 RmlD substrate binding domain - - - 0.00000000000000000009011 100.0
SYD3_k127_4344192_12 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000001145 96.0
SYD3_k127_4344192_13 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED K20866 - 3.1.3.10 0.00000000000000000645 92.0
SYD3_k127_4344192_14 NUDIX domain - - - 0.000000000000000009779 98.0
SYD3_k127_4344192_15 Uncharacterized conserved protein (DUF2304) K09153 - - 0.00000000000001665 79.0
SYD3_k127_4344192_16 Protein tyrosine kinase - - - 0.0007249 52.0
SYD3_k127_4344192_2 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002906 390.0
SYD3_k127_4344192_3 Belongs to the EPSP synthase family. MurA subfamily K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 358.0
SYD3_k127_4344192_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000009215 276.0
SYD3_k127_4344192_5 Glycosyl transferase 4-like domain - - - 0.000000000000000000000000000000000000000000000000000000003572 213.0
SYD3_k127_4344192_6 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000003862 193.0
SYD3_k127_4344192_7 Glycosyl transferase 4-like domain - - - 0.0000000000000000000000000000000000000000000000001547 198.0
SYD3_k127_4344192_8 permease - - - 0.00000000000000000000000000000000000000000000443 177.0
SYD3_k127_4344192_9 Glycosyltransferase like family K07011 - - 0.000000000000000000000000000000000000000007535 171.0
SYD3_k127_436035_0 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003159 376.0
SYD3_k127_436035_1 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001275 277.0
SYD3_k127_436035_2 PFAM fatty acid desaturase K00507 - 1.14.19.1 0.00000000000000000000000000000000000000000000000000000000001064 218.0
SYD3_k127_439248_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 5.284e-303 942.0
SYD3_k127_439248_1 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000005092 201.0
SYD3_k127_439248_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000004757 179.0
SYD3_k127_439248_3 PFAM peptidase M50 - - - 0.0000000000000000000000000000000000000002896 158.0
SYD3_k127_439248_4 - - - - 0.00000000000000000005197 99.0
SYD3_k127_439248_5 COG0500 SAM-dependent methyltransferases - - - 0.00000000000005657 79.0
SYD3_k127_439248_6 MotA/TolQ/ExbB proton channel family - - - 0.000000009997 66.0
SYD3_k127_439248_7 - - - - 0.00000008725 61.0
SYD3_k127_439248_8 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000209 54.0
SYD3_k127_4563314_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 2.984e-249 797.0
SYD3_k127_4563314_1 Hydroxymethylglutaryl-coenzyme A reductase K00054 - 1.1.1.88 0.0000000000000000000000000000000000000000000000000000000002303 218.0
SYD3_k127_4563314_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process - - - 0.0000000000000000000000000000000000000001646 159.0
SYD3_k127_5108458_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 7.995e-272 850.0
SYD3_k127_5108458_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000351 619.0
SYD3_k127_5108458_10 Uncharacterised ACR, YagE family COG1723 - - - 0.0000000000000000000000001124 117.0
SYD3_k127_5108458_11 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000003568 98.0
SYD3_k127_5108458_12 glycosyl transferase family - - - 0.00000000000001127 87.0
SYD3_k127_5108458_13 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000001054 82.0
SYD3_k127_5108458_14 Hep Hag repeat protein - - - 0.0000000001828 69.0
SYD3_k127_5108458_15 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000002456 66.0
SYD3_k127_5108458_16 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000006291 61.0
SYD3_k127_5108458_17 Belongs to the UPF0235 family K09131 - - 0.000000000807 66.0
SYD3_k127_5108458_19 S-layer homology domain - - - 0.0000009399 63.0
SYD3_k127_5108458_2 PFAM glycosyl transferase, family 51 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846 484.0
SYD3_k127_5108458_20 Binds directly to 16S ribosomal RNA K02968 - - 0.0001601 48.0
SYD3_k127_5108458_3 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008524 403.0
SYD3_k127_5108458_4 ABC-type multidrug transport system ATPase and permease K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003069 305.0
SYD3_k127_5108458_5 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000001174 229.0
SYD3_k127_5108458_6 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000004383 211.0
SYD3_k127_5108458_7 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.0000000000000000000000000000000000000000000000003463 196.0
SYD3_k127_5108458_8 RmuC family K09760 - - 0.0000000000000000000000000000000000000004165 161.0
SYD3_k127_5108458_9 metallopeptidase activity - - - 0.0000000000000000000000000000000000009389 162.0
SYD3_k127_5223647_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004731 538.0
SYD3_k127_5223647_1 phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 419.0
SYD3_k127_5223647_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 321.0
SYD3_k127_5223647_3 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.00000000000000000000000000000000000000000000000000000000000000000001044 242.0
SYD3_k127_5223647_4 zinc metalloprotease K04771,K11749,K16922 GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006355,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040007,GO:0043170,GO:0043856,GO:0044238,GO:0044425,GO:0044459,GO:0044464,GO:0045152,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000006648 240.0
SYD3_k127_5223647_5 LemA family K03744 - - 0.000000000000000000000000000000000000000000000000000000000000002128 222.0
SYD3_k127_5223647_6 haloacid dehalogenase-like hydrolase - - - 0.0000000000000000000000006288 115.0
SYD3_k127_5223647_8 Histidine kinase K07652 - 2.7.13.3 0.0007883 52.0
SYD3_k127_5643507_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0040007,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001921 591.0
SYD3_k127_5643507_1 hydrolase, TatD K03424 GO:0003674,GO:0003824,GO:0004518,GO:0004536,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000006431 203.0
SYD3_k127_5643507_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000000000000007433 171.0
SYD3_k127_5643507_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000928 64.0
SYD3_k127_5643507_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109,K02113 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0000003049 59.0
SYD3_k127_5643507_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000941 56.0
SYD3_k127_5710782_0 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009802 345.0
SYD3_k127_5710782_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 309.0
SYD3_k127_590068_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 571.0
SYD3_k127_590068_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000519 520.0
SYD3_k127_590068_10 Methyltransferase type 11 K20444 - - 0.00000000000000000000000000000000000000000000000000002034 196.0
SYD3_k127_590068_11 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000102 195.0
SYD3_k127_590068_12 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000000000001498 186.0
SYD3_k127_590068_13 PFAM Glycosyl transferase family 4 K02851 - 2.7.8.33,2.7.8.35 0.000000000000000000000000000000000000000000002826 178.0
SYD3_k127_590068_14 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000001281 161.0
SYD3_k127_590068_15 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000001845 174.0
SYD3_k127_590068_16 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000002252 150.0
SYD3_k127_590068_17 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000003234 126.0
SYD3_k127_590068_18 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000002201 133.0
SYD3_k127_590068_19 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000009846 131.0
SYD3_k127_590068_2 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006871 456.0
SYD3_k127_590068_20 GGDEF domain - - - 0.000000000000000000000000001506 126.0
SYD3_k127_590068_21 acr, cog1430 K09005 - - 0.0000000000000000000003642 105.0
SYD3_k127_590068_22 glycosyl transferase group 1 - - - 0.000000000000000008737 98.0
SYD3_k127_590068_23 methyltransferase - - - 0.000000000000005818 87.0
SYD3_k127_590068_24 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000001016 79.0
SYD3_k127_590068_25 -O-antigen - - - 0.0000000000002363 84.0
SYD3_k127_590068_26 Transmembrane amino acid transporter protein - - - 0.0000000000006826 81.0
SYD3_k127_590068_27 methyltransferase - - - 0.00000000009865 73.0
SYD3_k127_590068_28 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0017148,GO:0019222,GO:0022626,GO:0022627,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0043021,GO:0043022,GO:0043024,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045900,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:1990904,GO:2000112,GO:2000113 - 0.000000002296 62.0
SYD3_k127_590068_29 PGAP1-like protein - - - 0.000000002539 66.0
SYD3_k127_590068_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003944 284.0
SYD3_k127_590068_30 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000001073 60.0
SYD3_k127_590068_31 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000001008 66.0
SYD3_k127_590068_32 peptidase S1 and S6, chymotrypsin Hap - - - 0.00007255 53.0
SYD3_k127_590068_4 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000003598 270.0
SYD3_k127_590068_5 PFAM NAD dependent epimerase dehydratase family K08678 - 4.1.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000225 259.0
SYD3_k127_590068_6 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000003479 232.0
SYD3_k127_590068_7 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000007667 204.0
SYD3_k127_590068_8 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000001822 206.0
SYD3_k127_590068_9 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000007218 209.0
SYD3_k127_6031593_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 611.0
SYD3_k127_6031593_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043 467.0
SYD3_k127_6031593_10 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000000000000000001613 131.0
SYD3_k127_6031593_11 Peptidase family M23 K21471 - - 0.000000000000000000000000000425 128.0
SYD3_k127_6031593_12 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000002049 107.0
SYD3_k127_6031593_13 reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.0000000000000000002735 94.0
SYD3_k127_6031593_14 Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme K14656 GO:0000166,GO:0001882,GO:0001884,GO:0002135,GO:0003674,GO:0003824,GO:0003919,GO:0005488,GO:0005515,GO:0005524,GO:0006139,GO:0006725,GO:0006732,GO:0006747,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009161,GO:0009165,GO:0009259,GO:0009987,GO:0010181,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0032549,GO:0032551,GO:0032553,GO:0032555,GO:0032557,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042726,GO:0042727,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046443,GO:0046444,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072387,GO:0072388,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.7.7.2 0.000000000000009391 83.0
SYD3_k127_6031593_15 - - - - 0.000000000008488 76.0
SYD3_k127_6031593_16 His Kinase A (phosphoacceptor) domain - - - 0.0000001565 58.0
SYD3_k127_6031593_17 Cell division protein FtsQ K03589 - - 0.00000125 59.0
SYD3_k127_6031593_18 metalloendopeptidase activity K08956 GO:0000166,GO:0001302,GO:0002181,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005745,GO:0006412,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007568,GO:0007569,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016485,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019538,GO:0019866,GO:0030150,GO:0030554,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042886,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070011,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097002,GO:0097159,GO:0097367,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905368,GO:1990542 - 0.0006604 49.0
SYD3_k127_6031593_2 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885,K09698 - 6.1.1.17,6.1.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002955 458.0
SYD3_k127_6031593_3 TIGRFAM cell shape determining protein, MreB Mrl family K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001595 373.0
SYD3_k127_6031593_4 Catalyzes cross-linking of the peptidoglycan cell wall K05515 GO:0000270,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006022,GO:0006023,GO:0006024,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008360,GO:0008658,GO:0009002,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0016787,GO:0017171,GO:0019538,GO:0022603,GO:0022604,GO:0030203,GO:0031224,GO:0031226,GO:0031406,GO:0033218,GO:0033293,GO:0034645,GO:0036094,GO:0042221,GO:0042493,GO:0042546,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044425,GO:0044459,GO:0044464,GO:0045229,GO:0046677,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0065007,GO:0065008,GO:0070008,GO:0070011,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0071972,GO:0097159,GO:0140096,GO:1901135,GO:1901137,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004064 375.0
SYD3_k127_6031593_5 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000312 349.0
SYD3_k127_6031593_6 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004395 321.0
SYD3_k127_6031593_7 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009196 308.0
SYD3_k127_6031593_8 Glycosyl transferase, WecB TagA CpsF family K05946 - 2.4.1.187 0.0000000000000000000000000000000000000000000000003981 187.0
SYD3_k127_6031593_9 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000001788 152.0
SYD3_k127_60475_0 Cation transporter/ATPase, N-terminus K01535 - 3.6.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003386 403.0
SYD3_k127_60475_1 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006995 385.0
SYD3_k127_60475_2 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K00557 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016740,GO:0016741,GO:0030488,GO:0030696,GO:0030697,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000004676 271.0
SYD3_k127_60475_3 Possible lysine decarboxylase K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000001387 254.0
SYD3_k127_60475_4 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000001047 234.0
SYD3_k127_60475_5 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000005182 196.0
SYD3_k127_60475_6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain K04771,K04772 GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006457,GO:0006508,GO:0006515,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009897,GO:0009986,GO:0009987,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031233,GO:0031975,GO:0042597,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051603,GO:0061077,GO:0070011,GO:0071575,GO:0071704,GO:0071944,GO:0098552,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.21.107 0.000000000003673 79.0
SYD3_k127_60475_7 Rieske 2Fe-2S - - - 0.0002592 49.0
SYD3_k127_6163449_0 fe-s oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005503 598.0
SYD3_k127_6163449_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000006149 195.0
SYD3_k127_6163449_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.00000000000000000000000000000000000000000000005013 179.0
SYD3_k127_6163449_3 3-deoxy-manno-octulosonate-8-phosphatase activity K00983,K03270 - 2.7.7.43,3.1.3.45 0.0000000000000000000000000000000000000000001405 171.0
SYD3_k127_6163449_4 NUDIX domain K03574 - 3.6.1.55 0.0000000000000000000000000000000003642 141.0
SYD3_k127_6163449_5 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 0.0000000000000003666 92.0
SYD3_k127_6163449_6 Methyltransferase type 11 - - - 0.000000000002389 78.0
SYD3_k127_6163449_7 Short-chain dehydrogenase reductase sdr - - - 0.0000000002521 63.0
SYD3_k127_625770_0 Male sterility protein K01784,K08678 - 4.1.1.35,5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000003572 264.0
SYD3_k127_625770_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000003024 234.0
SYD3_k127_6858299_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 4.857e-194 623.0
SYD3_k127_6858299_1 DNA polymerase X family K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 526.0
SYD3_k127_6858299_10 COG NOG14600 non supervised orthologous group - - - 0.00000000000000000000000000000000000001883 147.0
SYD3_k127_6858299_11 COG NOG15344 non supervised orthologous group - - - 0.000000000000000000000000000000003941 133.0
SYD3_k127_6858299_12 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000001405 132.0
SYD3_k127_6858299_13 PFAM Glycosyl transferase, group 1 K00754 - - 0.000000000000000000000000000000159 139.0
SYD3_k127_6858299_14 Polysaccharide biosynthesis C-terminal domain - - - 0.000000000000000000000000000378 129.0
SYD3_k127_6858299_15 Belongs to the peptidase S11 family K07262 GO:0003674,GO:0003824,GO:0004175,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564 - 0.0000000000000000000000000004823 131.0
SYD3_k127_6858299_16 Belongs to the carbohydrate kinase PfkB family K00852 - 2.7.1.15 0.000000000000000000000000003524 126.0
SYD3_k127_6858299_17 Metallo-beta-lactamase domain protein K06167 - 3.1.4.55 0.0000000000000000000000005698 116.0
SYD3_k127_6858299_18 Belongs to the mannose-6-phosphate isomerase type 2 family K00971 - 2.7.7.13 0.00000000000000000000009084 111.0
SYD3_k127_6858299_19 PFAM Vitamin K epoxide reductase - - - 0.0000000000000000000001247 102.0
SYD3_k127_6858299_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 425.0
SYD3_k127_6858299_20 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0030428,GO:0032502,GO:0042623,GO:0043170,GO:0043934,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000004102 105.0
SYD3_k127_6858299_21 -O-antigen - - - 0.00000000000000000002325 104.0
SYD3_k127_6858299_22 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits - - - 0.00000000000000000008133 98.0
SYD3_k127_6858299_23 Sugar-specific transcriptional regulator TrmB - - - 0.00000000000000009246 89.0
SYD3_k127_6858299_24 - - - - 0.000000000000002444 79.0
SYD3_k127_6858299_25 - - - - 0.0000000000001323 76.0
SYD3_k127_6858299_26 sporulation protein K06381 - - 0.0000000000002005 84.0
SYD3_k127_6858299_27 Protein of unknown function DUF84 - - - 0.0000000000007392 75.0
SYD3_k127_6858299_28 PFAM O-antigen polymerase - - - 0.00000000001228 78.0
SYD3_k127_6858299_3 COG0191 Fructose tagatose bisphosphate aldolase K01624,K08302 - 4.1.2.13,4.1.2.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 311.0
SYD3_k127_6858299_30 phosphonoacetaldehyde hydrolase activity K00817,K01560,K07025,K20866 - 2.6.1.9,3.1.3.10,3.8.1.2 0.000002808 57.0
SYD3_k127_6858299_31 VKc - - - 0.000002892 55.0
SYD3_k127_6858299_32 COG2931 RTX toxins and related Ca2 -binding proteins K07004 - - 0.00001211 58.0
SYD3_k127_6858299_34 Lamin Tail Domain - - - 0.00003669 57.0
SYD3_k127_6858299_37 Bacterial PH domain K08981 - - 0.0008198 50.0
SYD3_k127_6858299_4 D-isomer specific 2-hydroxyacid dehydrogenase K00015 - 1.1.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007095 309.0
SYD3_k127_6858299_5 Transketolase, pyrimidine binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006615 302.0
SYD3_k127_6858299_6 phosphotransferase activity, for other substituted phosphate groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009103 300.0
SYD3_k127_6858299_7 N-terminal domain of ribose phosphate pyrophosphokinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001547 259.0
SYD3_k127_6858299_8 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042,K11528 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000002451 188.0
SYD3_k127_6858299_9 COGs COG0503 Adenine guanine phosphoribosyltransferase and related PRPP-binding protein K00759 - 2.4.2.7 0.000000000000000000000000000000000000002681 166.0
SYD3_k127_6864004_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 1.886e-249 792.0
SYD3_k127_6864004_1 PFAM Type II secretion system protein E K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006636 455.0
SYD3_k127_6864004_10 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000000000000000000000000000000000000000000000000000002182 227.0
SYD3_k127_6864004_11 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000001253 223.0
SYD3_k127_6864004_12 Glycosyl transferase - - - 0.0000000000000000000000000000000000000000000000000000001734 207.0
SYD3_k127_6864004_13 Glycosyltransferase like family 2 K03606,K07011 - - 0.0000000000000000000000000000000000000000000000000000007436 210.0
SYD3_k127_6864004_14 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K01802,K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000004111 186.0
SYD3_k127_6864004_15 Histidine kinase - - - 0.000000000000000000000000000000000000000000000001248 192.0
SYD3_k127_6864004_16 Protein of unknown function (DUF4012) - - - 0.00000000000000000000000000000000000002696 164.0
SYD3_k127_6864004_17 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.00000000000000000000000000000000000003155 151.0
SYD3_k127_6864004_18 NAD dependent epimerase/dehydratase family - - - 0.00000000000000000000000000000000000003381 153.0
SYD3_k127_6864004_19 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000005483 147.0
SYD3_k127_6864004_2 Cell division protein FtsA K03569 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004653 391.0
SYD3_k127_6864004_20 Kelch motif - - - 0.00000000000000000000000000000006482 138.0
SYD3_k127_6864004_21 Mycobacterial 4 TMS phage holin, superfamily IV K08972 - - 0.0000000000000000000000000000003266 128.0
SYD3_k127_6864004_22 Belongs to the uridine kinase family K00855,K00876 - 2.7.1.19,2.7.1.48 0.000000000000000000001585 108.0
SYD3_k127_6864004_23 pilus assembly protein PilM K02662 - - 0.00000000000000000009707 102.0
SYD3_k127_6864004_24 - - - - 0.0000000000000001144 86.0
SYD3_k127_6864004_26 Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins K07400 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0010467,GO:0015976,GO:0016043,GO:0016226,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042592,GO:0042594,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0050896,GO:0051186,GO:0051536,GO:0051539,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0097428,GO:0098771,GO:1901564 - 0.00000000000213 69.0
SYD3_k127_6864004_27 Transcriptional regulator - - - 0.0000000001097 73.0
SYD3_k127_6864004_28 PAS domain - - - 0.0000001343 59.0
SYD3_k127_6864004_29 Parallel beta-helix repeats - - - 0.0000003275 61.0
SYD3_k127_6864004_3 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003615 281.0
SYD3_k127_6864004_30 haloacid dehalogenase-like hydrolase K01079 - 3.1.3.3 0.0000009266 59.0
SYD3_k127_6864004_31 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.00007475 49.0
SYD3_k127_6864004_32 domain, Protein K09766 - - 0.00009786 55.0
SYD3_k127_6864004_33 - K20276 - - 0.0001463 55.0
SYD3_k127_6864004_34 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source K01916 - 6.3.1.5 0.0003155 53.0
SYD3_k127_6864004_4 Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000001645 269.0
SYD3_k127_6864004_5 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008783 272.0
SYD3_k127_6864004_6 COG COG1459 Type II secretory pathway component PulF Cell motility and secretion Intracellular trafficking and secretion K02653 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003886 257.0
SYD3_k127_6864004_7 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000003167 235.0
SYD3_k127_6864004_8 UMP kinase activity K00947,K09903 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0030151,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000003732 226.0
SYD3_k127_6864004_9 nuclease (RecB family) - - - 0.000000000000000000000000000000000000000000000000000000000000197 231.0
SYD3_k127_6881953_0 UvrD-like helicase C-terminal domain K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 555.0
SYD3_k127_6881953_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 408.0
SYD3_k127_6881953_10 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000003061 218.0
SYD3_k127_6881953_11 PFAM glycoside hydrolase, family 77 K00705 - 2.4.1.25 0.00000000000000000000000000000000000000000000000000002605 207.0
SYD3_k127_6881953_12 ZIP Zinc transporter K16267 - - 0.000000000000000000000000000000000000000000000002041 182.0
SYD3_k127_6881953_13 Protein of unknown function (DUF2914) - - - 0.00000000000000000000000000000000000000000000001187 183.0
SYD3_k127_6881953_14 endonuclease III K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000003046 181.0
SYD3_k127_6881953_15 Protein of unknown function (DUF3048) C-terminal domain - - - 0.000000000000000000000000000000000000000002923 169.0
SYD3_k127_6881953_16 transferase activity, transferring glycosyl groups K21349 - 2.4.1.268 0.0000000000000000000000000000005053 136.0
SYD3_k127_6881953_17 Acid phosphatase homologues K19302 - 3.6.1.27 0.000000000000000000000001666 111.0
SYD3_k127_6881953_18 PFAM Adenylate cyclase K01768 - 4.6.1.1 0.00000000000000000000009562 108.0
SYD3_k127_6881953_19 Translin-associated protein X - - - 0.000000000001704 75.0
SYD3_k127_6881953_2 Protein of unknown function (DUF3417) K00688 - 2.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 391.0
SYD3_k127_6881953_20 Calcineurin-like phosphoesterase - - - 0.000000002216 70.0
SYD3_k127_6881953_21 COG1226 Kef-type K transport systems - - - 0.000000003994 68.0
SYD3_k127_6881953_22 prepilin-type N-terminal cleavage methylation K02456 - - 0.0009411 52.0
SYD3_k127_6881953_3 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 355.0
SYD3_k127_6881953_4 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009011,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002248 310.0
SYD3_k127_6881953_5 PFAM Nucleotidyl transferase K00971,K16011 - 2.7.7.13,5.3.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000464 286.0
SYD3_k127_6881953_6 Bacitracin resistance protein BacA K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000001705 249.0
SYD3_k127_6881953_7 membrane protein (DUF2207) - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000004642 229.0
SYD3_k127_6881953_8 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000009101 216.0
SYD3_k127_6881953_9 PFAM CBS domain - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000002386 222.0
SYD3_k127_7034716_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.3 3.808e-210 670.0
SYD3_k127_7034716_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 6.539e-196 628.0
SYD3_k127_7034716_10 dUTP diphosphatase activity K01520,K13038 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043167,GO:0043169,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0051259,GO:0051260,GO:0055086,GO:0065003,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23,4.1.1.36,6.3.2.5 0.0000000000000000000000000000000006751 135.0
SYD3_k127_7034716_11 dephospho-CoA kinase activity - - - 0.00000000000004056 84.0
SYD3_k127_7034716_12 Psort location CytoplasmicMembrane, score - - - 0.0000000000007575 79.0
SYD3_k127_7034716_13 - - - - 0.0000000002301 62.0
SYD3_k127_7034716_14 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000002295 54.0
SYD3_k127_7034716_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 GO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 449.0
SYD3_k127_7034716_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004636 348.0
SYD3_k127_7034716_4 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001431 248.0
SYD3_k127_7034716_5 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000001354 250.0
SYD3_k127_7034716_6 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000004699 232.0
SYD3_k127_7034716_7 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.0000000000000000000000000000000000000000000000000005422 188.0
SYD3_k127_7034716_8 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000001454 172.0
SYD3_k127_7034716_9 MafB19-like deaminase K01493 - 3.5.4.12 0.000000000000000000000000000000000000000003116 160.0
SYD3_k127_7103761_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835,K15034 GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016149,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006921 367.0
SYD3_k127_7103761_1 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005381 253.0
SYD3_k127_7103761_10 Involved in molybdopterin and thiamine biosynthesis, family 2 K21029 - 2.7.7.80 0.00000000000000001824 95.0
SYD3_k127_7103761_11 PFAM Vitamin K epoxide reductase - - - 0.00000000000002193 78.0
SYD3_k127_7103761_12 Belongs to the UPF0200 family - - - 0.00000000006684 71.0
SYD3_k127_7103761_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000004501 241.0
SYD3_k127_7103761_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000001937 226.0
SYD3_k127_7103761_4 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493,K07320 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009007,GO:0009008,GO:0009987,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0032259,GO:0032775,GO:0034641,GO:0036009,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044728,GO:0046483,GO:0071704,GO:0090304,GO:0140096,GO:0140097,GO:1901360,GO:1901564 2.1.1.297,2.1.1.298 0.00000000000000000000000000000000000000000818 167.0
SYD3_k127_7103761_5 Protein of unknown function (DUF4230) - - - 0.0000000000000000000000000000000000816 140.0
SYD3_k127_7103761_6 Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks - - - 0.0000000000000000000000000000000009662 131.0
SYD3_k127_7103761_7 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000001446 127.0
SYD3_k127_7103761_8 glucosamine-1-phosphate N-acetyltransferase activity K04042,K11528,K16203 GO:0000270,GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0003977,GO:0005488,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006629,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009252,GO:0009273,GO:0009987,GO:0016051,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0019134,GO:0022610,GO:0030203,GO:0030260,GO:0033692,GO:0034637,GO:0034645,GO:0035635,GO:0040007,GO:0042546,GO:0043167,GO:0043169,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044403,GO:0044406,GO:0044409,GO:0044419,GO:0044650,GO:0046872,GO:0051701,GO:0051704,GO:0051806,GO:0051828,GO:0070569,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509 2.3.1.157,2.7.7.23 0.0000000000000000000000000000761 124.0
SYD3_k127_7103761_9 Binds the 23S rRNA K02909 - - 0.0000000000000000000000001733 108.0
SYD3_k127_7444980_0 Belongs to the DEAD box helicase family K05592,K11927 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 488.0
SYD3_k127_7444980_1 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005199 392.0
SYD3_k127_7444980_10 metallophosphoesterase K07096 - - 0.00000000000006905 81.0
SYD3_k127_7444980_2 helicase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007357 316.0
SYD3_k127_7444980_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901576 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002891 289.0
SYD3_k127_7444980_4 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000115 155.0
SYD3_k127_7444980_5 PFAM MarC family integral membrane protein K05595 - - 0.0000000000000000000000000000005029 135.0
SYD3_k127_7444980_6 DNA-binding protein with PD1-like DNA-binding motif K06934 - - 0.00000000000000000003245 102.0
SYD3_k127_7444980_7 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.0000000000000000004803 89.0
SYD3_k127_7444980_8 phosphoribosyl-ATP pyrophosphohydrolase - - - 0.00000000000000000102 96.0
SYD3_k127_7444980_9 Belongs to the ParB family K03497 - - 0.000000000000000001322 96.0
SYD3_k127_7455606_0 PFAM Pyruvate flavodoxin ferredoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 342.0
SYD3_k127_7455606_1 Acyltransferase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008484 322.0
SYD3_k127_7455606_2 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000001333 267.0
SYD3_k127_7455606_3 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 GO:0006082,GO:0006083,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016053,GO:0016999,GO:0017000,GO:0017144,GO:0019413,GO:0019752,GO:0032787,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576 2.7.2.1 0.0000000000000000000000000000000000000000000000000000001885 201.0
SYD3_k127_7455606_4 Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate K15024 - 2.3.1.8 0.0000000000000000000000000000000000000000000000000000008208 200.0
SYD3_k127_7455606_5 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000001912 139.0
SYD3_k127_7455606_6 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 - 1.2.7.3 0.0000000000000002013 85.0
SYD3_k127_7528348_0 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002075 581.0
SYD3_k127_7528348_1 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002526 439.0
SYD3_k127_7528348_10 phosphoribosyl transferase K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.000000000000000000000000000000002284 133.0
SYD3_k127_7528348_11 Pterin 4 alpha carbinolamine dehydratase K01724 - 4.2.1.96 0.0000000000000000000000000000001212 135.0
SYD3_k127_7528348_12 Protein conserved in bacteria - - - 0.0000000000000000000000000000002057 132.0
SYD3_k127_7528348_13 extracellular polysaccharide biosynthetic process K13582 - - 0.00000000000000000000000000003048 129.0
SYD3_k127_7528348_14 - - - - 0.00000000000000000000000001827 116.0
SYD3_k127_7528348_15 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000002624 119.0
SYD3_k127_7528348_16 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000000000001009 98.0
SYD3_k127_7528348_17 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.000000000000000001073 91.0
SYD3_k127_7528348_18 protein related to plant photosystem II stability assembly factor - - - 0.00001192 57.0
SYD3_k127_7528348_19 Gram-negative-bacterium-type cell wall biogenesis - GO:0000270,GO:0005575,GO:0005623,GO:0005886,GO:0006022,GO:0006807,GO:0008150,GO:0008152,GO:0009273,GO:0009987,GO:0016020,GO:0016021,GO:0030203,GO:0031224,GO:0042546,GO:0043164,GO:0043170,GO:0044085,GO:0044425,GO:0044464,GO:0071554,GO:0071704,GO:0071840,GO:0071944,GO:1901135,GO:1901564 - 0.0001224 52.0
SYD3_k127_7528348_2 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 360.0
SYD3_k127_7528348_3 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 349.0
SYD3_k127_7528348_4 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000000000007957 249.0
SYD3_k127_7528348_5 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006406 258.0
SYD3_k127_7528348_6 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000001195 192.0
SYD3_k127_7528348_7 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000345 170.0
SYD3_k127_7528348_8 homoserine dehydrogenase activity K00003,K12524 - 1.1.1.3,2.7.2.4 0.0000000000000000000000000000000000000005129 162.0
SYD3_k127_7528348_9 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000002246 138.0
SYD3_k127_7857163_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 3.152e-233 740.0
SYD3_k127_7857163_1 NAD(P)H-binding K08679 - 5.1.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002059 511.0
SYD3_k127_7857163_2 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.000000000000000000000004276 104.0
SYD3_k127_7857163_3 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000003238 84.0
SYD3_k127_7857163_4 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.00000000993 61.0
SYD3_k127_7880065_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1078.0
SYD3_k127_7880065_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K12954,K12956,K17686,K21887 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0008150,GO:0009405,GO:0010035,GO:0010038,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0042221,GO:0044419,GO:0044425,GO:0044459,GO:0044464,GO:0046688,GO:0050896,GO:0051704,GO:0071944 3.6.3.4,3.6.3.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002285 605.0
SYD3_k127_7880065_10 ASCH - - - 0.000001737 56.0
SYD3_k127_7880065_2 Cytochrome C biogenesis protein transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000002602 221.0
SYD3_k127_7880065_3 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000008448 202.0
SYD3_k127_7880065_4 CAAX protease self-immunity - - - 0.0000000000000000000000000000000008475 139.0
SYD3_k127_7880065_5 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000006261 131.0
SYD3_k127_7880065_6 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.0000000000000000000000008075 106.0
SYD3_k127_7880065_7 MOSC domain - - - 0.000000000000001124 87.0
SYD3_k127_7880065_8 HAD-hyrolase-like - - - 0.00000000001263 73.0
SYD3_k127_7880065_9 Tricorn protease C1 domain - - - 0.00000002517 66.0
SYD3_k127_78808_0 YHYH protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000322 295.0
SYD3_k127_78808_1 glyoxalase bleomycin resistance protein dioxygenase K07032 - - 0.000000000000000000000000000000000000000001903 159.0
SYD3_k127_78808_2 Protein of unknown function (DUF1428) - - - 0.000000000000000000000000000000000000000236 152.0
SYD3_k127_78808_3 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000000000000004224 124.0
SYD3_k127_78808_4 glyoxalase K06996 - - 0.00000000000000000000000000005965 120.0
SYD3_k127_78808_7 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0000000001881 62.0
SYD3_k127_78808_8 Domain of unknown function (DU1801) - - - 0.00001837 53.0
SYD3_k127_7951160_0 Belongs to the ClpA ClpB family K03696 GO:0006950,GO:0008150,GO:0010035,GO:0010038,GO:0042221,GO:0046686,GO:0046688,GO:0050896,GO:0097501,GO:1990169,GO:1990170 - 2.891e-204 653.0
SYD3_k127_7951160_1 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 448.0
SYD3_k127_7951160_10 COG3209 Rhs family protein - - - 0.00001089 55.0
SYD3_k127_7951160_11 protein secretion by the type IV secretion system K03201 - - 0.00001402 59.0
SYD3_k127_7951160_12 - K18481 - - 0.0000413 53.0
SYD3_k127_7951160_13 WD40-like Beta Propeller Repeat K03641 - - 0.0000457 55.0
SYD3_k127_7951160_14 Belongs to the SUA5 family K07566 GO:0000049,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034641,GO:0034660,GO:0040007,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 2.7.7.87 0.0001124 47.0
SYD3_k127_7951160_15 Sortase family - - - 0.0003141 56.0
SYD3_k127_7951160_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007304 413.0
SYD3_k127_7951160_3 AAA-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001472 387.0
SYD3_k127_7951160_4 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000008394 176.0
SYD3_k127_7951160_5 Thioredoxin - - - 0.0000000000000000000000000000004955 130.0
SYD3_k127_7951160_6 PFAM Phosphoribosyltransferase K02242 - - 0.00000000000000000005422 98.0
SYD3_k127_7951160_7 - - - - 0.00000000000000156 81.0
SYD3_k127_8095935_0 PFAM TrkA-N domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005318 396.0
SYD3_k127_8095935_1 Major Facilitator K08153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 330.0
SYD3_k127_8095935_10 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000002771 90.0
SYD3_k127_8095935_11 Phosphodiester glycosidase - - - 0.000000007373 68.0
SYD3_k127_8095935_12 bacterial regulatory proteins, luxR family - - - 0.00000004847 63.0
SYD3_k127_8095935_2 aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009325 297.0
SYD3_k127_8095935_3 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001281 287.0
SYD3_k127_8095935_4 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000002391 231.0
SYD3_k127_8095935_5 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000002088 168.0
SYD3_k127_8095935_6 CoA binding domain K06929 - - 0.00000000000000000000000000000000000002195 149.0
SYD3_k127_8095935_7 Transport and Golgi organisation 2 - - - 0.000000000000000000000000000000000365 144.0
SYD3_k127_8095935_8 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000006653 117.0
SYD3_k127_812288_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002005 529.0
SYD3_k127_812288_1 Belongs to the peptidase M16 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000003142 247.0
SYD3_k127_812288_2 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000003744 155.0
SYD3_k127_812288_3 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.0000000000000000002472 100.0
SYD3_k127_812288_4 K COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit - - - 0.000000000000000006479 97.0
SYD3_k127_812288_5 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000001995 76.0
SYD3_k127_812288_6 PFAM Glycosyl transferase, group 1 - - - 0.0000005972 53.0
SYD3_k127_812288_7 C-terminal domain of CHU protein family - - - 0.000001718 63.0
SYD3_k127_8434971_0 YibE/F-like protein - - - 0.00000000000000000000000000000000000000000000000000000000006222 219.0
SYD3_k127_8434971_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000009305 154.0
SYD3_k127_8434971_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.0000000000000000000000000004197 117.0
SYD3_k127_8434971_3 poly(A)-specific ribonuclease activity K12603,K19612 - 3.1.13.4 0.0000000000005727 81.0
SYD3_k127_8434971_4 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000003691 51.0
SYD3_k127_8485232_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000004223 222.0
SYD3_k127_8485232_1 Protein of unknown function (DUF3494) - - - 0.000000000000000000000000000000000000000001847 174.0
SYD3_k127_8485232_2 PFAM Mannose-6-phosphate isomerase - - - 0.000000002609 59.0
SYD3_k127_8501995_0 acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004414 315.0
SYD3_k127_8501995_1 ATPases associated with a variety of cellular activities K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000201 259.0
SYD3_k127_8501995_10 Peptidase family M23 K21472 - - 0.0000000000000000001551 100.0
SYD3_k127_8501995_11 Modified RING finger domain K09561,K19613 - 2.3.2.27 0.0000000000000001236 86.0
SYD3_k127_8501995_12 SurA N-terminal domain K07533 - 5.2.1.8 0.0000000000001018 83.0
SYD3_k127_8501995_13 Glyoxalase-like domain - - - 0.00000000009088 69.0
SYD3_k127_8501995_14 Pantothenate kinase K09680 - 2.7.1.33 0.00000002252 65.0
SYD3_k127_8501995_15 transporter K08978 - - 0.0000005544 63.0
SYD3_k127_8501995_16 Bacterial PH domain - - - 0.000001345 61.0
SYD3_k127_8501995_17 Prokaryotic N-terminal methylation motif - - - 0.0004454 49.0
SYD3_k127_8501995_2 Abc transporter K06158 - - 0.00000000000000000000000000000000000000000000000000000000001678 225.0
SYD3_k127_8501995_3 TIGRFAM methionine-R-sulfoxide reductase K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000001942 182.0
SYD3_k127_8501995_4 Flavodoxin-like fold - - - 0.0000000000000000000000000000000000000000002788 169.0
SYD3_k127_8501995_5 fatty acid hydroxylase - - - 0.0000000000000000000000000000000000000000005544 166.0
SYD3_k127_8501995_6 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000003687 125.0
SYD3_k127_8501995_7 Zincin-like metallopeptidase - - - 0.0000000000000000000008213 106.0
SYD3_k127_8501995_8 Putative ABC-transporter type IV - - - 0.000000000000000000008952 98.0
SYD3_k127_8501995_9 bis(5'-adenosyl)-triphosphatase activity K01518 - 3.6.1.17 0.00000000000000000009772 97.0
SYD3_k127_8765678_0 GTP-binding protein LepA C-terminus K03596 - - 7.356e-207 660.0
SYD3_k127_8765678_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009104 585.0
SYD3_k127_8765678_10 MviN-like protein K03980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001279 274.0
SYD3_k127_8765678_11 Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction K00925 - 2.7.2.1 0.00000000000000000000000000000000000000000000000000000000000002488 220.0
SYD3_k127_8765678_12 nUDIX hydrolase K01515 - 3.6.1.13 0.000000000000000000000000000000000000000000000000002985 186.0
SYD3_k127_8765678_13 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000002171 159.0
SYD3_k127_8765678_14 Prolipoprotein diacylglyceryl transferase K13292 - - 0.0000000000000000000000000000001528 134.0
SYD3_k127_8765678_15 PFAM ribonuclease H K03469,K06864 - 3.1.26.4 0.0000000000000000000000000000005285 126.0
SYD3_k127_8765678_16 Pilus assembly protein K02662 - - 0.000000000000000000000001398 116.0
SYD3_k127_8765678_17 cheY-homologous receiver domain K03407,K03413 - 2.7.13.3 0.000000000000000000000005582 107.0
SYD3_k127_8765678_18 HNH nucleases - - - 0.0000000000000000007956 93.0
SYD3_k127_8765678_19 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000005472 81.0
SYD3_k127_8765678_2 oligoendopeptidase F K08602 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001421 552.0
SYD3_k127_8765678_20 Protein conserved in bacteria K09705 - - 0.0000000001254 65.0
SYD3_k127_8765678_21 ribosomal large subunit export from nucleus - - - 0.0000000001593 71.0
SYD3_k127_8765678_22 Protein of unknown function (DUF1349) - - - 0.000000000199 74.0
SYD3_k127_8765678_23 Prokaryotic N-terminal methylation motif - - - 0.000000001202 65.0
SYD3_k127_8765678_24 Prokaryotic N-terminal methylation motif - - - 0.0000000478 61.0
SYD3_k127_8765678_26 General secretion pathway protein K02456 - - 0.000455 49.0
SYD3_k127_8765678_3 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 527.0
SYD3_k127_8765678_4 PFAM Type II secretion system protein E K02652 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 430.0
SYD3_k127_8765678_5 Single-strand DNA-specific exonuclease, C terminal domain K07462 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005186 394.0
SYD3_k127_8765678_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009362 362.0
SYD3_k127_8765678_7 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 331.0
SYD3_k127_8765678_8 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488 GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006152,GO:0006154,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009156,GO:0009161,GO:0009163,GO:0009164,GO:0009165,GO:0009167,GO:0009168,GO:0009987,GO:0015949,GO:0015950,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0019637,GO:0032261,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0043173,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046100,GO:0046101,GO:0046102,GO:0046103,GO:0046112,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659 3.5.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001524 283.0
SYD3_k127_8765678_9 PFAM Bacterial type II secretion system protein F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001357 271.0
SYD3_k127_8834431_0 PFAM VanW like protein - - - 0.0000000000000000000000000000000000000000000002691 185.0
SYD3_k127_8840601_0 COG COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003666 451.0
SYD3_k127_8840601_1 Penicillin-binding Protein dimerisation domain K03587,K08384 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0008144,GO:0008150,GO:0008658,GO:0008955,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0031224,GO:0031226,GO:0031406,GO:0032153,GO:0033218,GO:0033293,GO:0036094,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043177,GO:0044425,GO:0044459,GO:0044464,GO:0050896,GO:0051301,GO:0071944,GO:0097159,GO:1901363,GO:1901681 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000004603 256.0
SYD3_k127_8840601_2 RNase_H superfamily K06877 - - 0.0000000000000000000000005566 108.0
SYD3_k127_8840601_3 protein secretion - GO:0005575,GO:0005576 - 0.00007905 55.0
SYD3_k127_904740_0 Anticodon binding domain K01881 - 6.1.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005768 383.0
SYD3_k127_904740_1 TIGRFAM metallophosphoesterase, MG_246 BB_0505 family K09769 - - 0.00000000000000000000000000000000000000000000000000000000001708 215.0
SYD3_k127_904740_2 Endoribonuclease that initiates mRNA decay K18682 - - 0.000000000000000000000000000000000000000001819 159.0
SYD3_k127_904740_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0000000000000001785 82.0
SYD3_k127_9650004_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006185 544.0
SYD3_k127_9650004_1 Participates in both transcription termination and antitermination K02600 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000000000002261 185.0
SYD3_k127_9650004_2 PFAM 60 kDa inner membrane insertion protein K03217 - - 0.00000000000000000000000000000001065 136.0
SYD3_k127_9650004_3 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000001711 128.0
SYD3_k127_9650004_4 nucleotidyltransferase activity - - - 0.000000000000009848 87.0
SYD3_k127_9650004_5 TM2 domain - - - 0.00000000000001293 77.0
SYD3_k127_9650004_6 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0002377 46.0
SYD3_k127_9737069_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003109 326.0
SYD3_k127_9737069_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.000000000000000000000000000000000000000000000000000007952 212.0
SYD3_k127_9862050_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 303.0
SYD3_k127_9862050_1 ATP-binding protein K06925 GO:0002949,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0070525,GO:0071704,GO:0090304,GO:1901360 - 0.00000000000000000000000237 108.0
SYD3_k127_9862050_2 phenylacetate-CoA ligase activity - - - 0.00000000001503 70.0
SYD3_k127_9862050_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000003839 64.0
SYD3_k127_9862050_4 Methyltransferase type 11 - - - 0.00008395 53.0
SYD3_k127_9877578_0 MacB-like periplasmic core domain K02004 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000002461 199.0
SYD3_k127_9877578_1 Reductase C-terminal K00529 - 1.18.1.3 0.0000000000000000000000000000000000000002577 165.0
SYD3_k127_9877578_2 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000537 161.0
SYD3_k127_9877578_3 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000005415 128.0
SYD3_k127_9877578_4 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K05337 - - 0.0000000001486 65.0
SYD3_k127_9889278_0 glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001387 274.0
SYD3_k127_9889278_1 self proteolysis - - - 0.00000000000000000000000000001531 136.0
SYD3_k127_9889278_3 Domain of unknown function DUF11 - - - 0.0001302 55.0
SYD3_k127_9897640_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 3.338e-221 717.0
SYD3_k127_9897640_1 asparaginyl-tRNA synthetase K01893 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 531.0
SYD3_k127_9897640_10 PFAM 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000351 228.0
SYD3_k127_9897640_11 TIGRFAM periplasmic serine protease, Do DeqQ family K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000002835 229.0
SYD3_k127_9897640_12 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.000000000000000000000000000000000000000000000000000000000001744 224.0
SYD3_k127_9897640_13 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000685 219.0
SYD3_k127_9897640_14 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000008966 226.0
SYD3_k127_9897640_15 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.000000000000000000000000000000000000000000000000000001415 199.0
SYD3_k127_9897640_16 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000225 203.0
SYD3_k127_9897640_17 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.0000000000000000000000000000000000000000000000001516 196.0
SYD3_k127_9897640_18 Hpt domain - - - 0.0000000000000000000000000000000000000002954 164.0
SYD3_k127_9897640_19 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000001495 152.0
SYD3_k127_9897640_2 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 474.0
SYD3_k127_9897640_20 Belongs to the peptidase S11 family K07262 - - 0.00000000000000000000000000000000000001421 156.0
SYD3_k127_9897640_21 TIGRFAM signal peptidase I, bacterial type K03100 - 3.4.21.89 0.00000000000000000000000000000000008038 142.0
SYD3_k127_9897640_22 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0000000000000000000000000000000005046 139.0
SYD3_k127_9897640_23 YqeY-like protein K09117 - - 0.000000000000000000000000000001541 125.0
SYD3_k127_9897640_24 Domain of unknown function (DUF4215) - - - 0.000000000000000000000000001155 134.0
SYD3_k127_9897640_25 - - - - 0.00000000000000000000000008114 111.0
SYD3_k127_9897640_26 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000657 118.0
SYD3_k127_9897640_27 Peptidase C26 K01951 - 6.3.5.2 0.000000000000000000000002396 109.0
SYD3_k127_9897640_28 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.00000000000000000000005694 104.0
SYD3_k127_9897640_29 Putative metal-binding motif - - - 0.0000000000000000006208 100.0
SYD3_k127_9897640_3 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 466.0
SYD3_k127_9897640_30 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000002991 83.0
SYD3_k127_9897640_31 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000005688 83.0
SYD3_k127_9897640_32 C-type lectin (CTL) or carbohydrate-recognition domain (CRD) - - - 0.00000000000004272 80.0
SYD3_k127_9897640_33 Endonuclease Exonuclease Phosphatase - - - 0.000000000002533 80.0
SYD3_k127_9897640_34 Domain of unknown function (DUF4215) - - - 0.00000001705 70.0
SYD3_k127_9897640_36 Aminoacyl-tRNA editing domain K19055 - - 0.000001304 58.0
SYD3_k127_9897640_37 - - - - 0.0001179 51.0
SYD3_k127_9897640_38 oxidoreductase activity K11089 - - 0.000148 53.0
SYD3_k127_9897640_4 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 414.0
SYD3_k127_9897640_5 Catalyzes the formation of phosphoenolpyruvate from pyruvate K00873 GO:0001871,GO:0003674,GO:0003824,GO:0004743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006116,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030246,GO:0030247,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:2001065 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004647 413.0
SYD3_k127_9897640_6 histidyl-tRNA aminoacylation K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 354.0
SYD3_k127_9897640_7 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 341.0
SYD3_k127_9897640_8 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 328.0
SYD3_k127_9897640_9 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001809 294.0