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Overview

ID MAG04582
Name YHH3_bin.5
Sample SMP0123
Taxonomy
Kingdom Bacteria
Phylum Chloroflexota
Class Dehalococcoidia
Order RBG-13-53-26
Family RBG-13-53-26
Genus RBG-13-53-26
Species
Assembly information
Completeness (%) 72.24
Contamination (%) 3.2
GC content (%) 60.0
N50 (bp) 3,646
Genome size (bp) 1,340,103

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1419

Gene name Description KEGG GOs EC E-value Score Sequence
YHH3_k127_10036881_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 3.331e-207 661.0
YHH3_k127_10036881_1 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 587.0
YHH3_k127_10036881_2 Periplasmic binding protein domain K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000785 353.0
YHH3_k127_10036881_3 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006416 303.0
YHH3_k127_10036881_4 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001329 270.0
YHH3_k127_10036881_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000585 267.0
YHH3_k127_10036881_6 ABC transporter K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001094 255.0
YHH3_k127_10036881_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 - 1.2.7.8 0.000000000000000000000000000000000000000000000001893 182.0
YHH3_k127_10036881_8 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000007233 152.0
YHH3_k127_10036881_9 ACT domain - - - 0.000000000000000000000000000001606 125.0
YHH3_k127_10168287_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 529.0
YHH3_k127_10168287_1 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002315 372.0
YHH3_k127_10168287_11 Protein of unknown function (DUF2804) - - - 0.0003855 43.0
YHH3_k127_10168287_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001424 362.0
YHH3_k127_10168287_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000453 361.0
YHH3_k127_10168287_4 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 346.0
YHH3_k127_10168287_5 Plays a role in the regulation of phosphate uptake K02039 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 327.0
YHH3_k127_10168287_6 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002004 279.0
YHH3_k127_10168287_7 Transcriptional regulatory protein, C terminal K02483 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008869 273.0
YHH3_k127_10168287_8 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.00000000000000000000000000000000000000000000000000000000000792 209.0
YHH3_k127_10168287_9 Low molecular weight phosphatase family K03741 - 1.20.4.1 0.000000000000000000000000000000000322 137.0
YHH3_k127_10168378_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533 - 3.6.3.4 1.643e-289 906.0
YHH3_k127_10168378_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 458.0
YHH3_k127_10168378_10 Short C-terminal domain K08982 - - 0.0000000007844 62.0
YHH3_k127_10168378_11 PFAM Rubrerythrin - - - 0.000006704 49.0
YHH3_k127_10168378_12 HicB family - - - 0.00004956 48.0
YHH3_k127_10168378_13 Rubrerythrin - - - 0.000945 43.0
YHH3_k127_10168378_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002984 335.0
YHH3_k127_10168378_3 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000004302 174.0
YHH3_k127_10168378_4 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000004488 135.0
YHH3_k127_10168378_5 PFAM Methyltransferase - - - 0.00000000000000000000000000001648 120.0
YHH3_k127_10168378_6 TIGRFAM cation diffusion facilitator family transporter K16264 - - 0.0000000000000000000000000003881 117.0
YHH3_k127_10168378_7 Flavodoxin domain - - - 0.0000000000000000000001228 104.0
YHH3_k127_10168378_8 protein encoded in hypervariable junctions of pilus gene clusters - - - 0.000000000000000002567 87.0
YHH3_k127_10168378_9 Rubrerythrin - - - 0.0000000000002911 72.0
YHH3_k127_10178118_0 DNA photolyase K01669 - 4.1.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005187 603.0
YHH3_k127_10178118_1 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000327 295.0
YHH3_k127_10178118_2 Uncharacterised protein, DegV family COG1307 - - - 0.000000000000000000000000000000000000000000000000000000000005635 217.0
YHH3_k127_10178118_3 Pfam:Pyridox_oxidase - - - 0.000000000000000000000000000000002822 135.0
YHH3_k127_10178118_4 Thioesterase family K10806 - - 0.000000000000000008232 87.0
YHH3_k127_10220130_0 GDP-mannose 4,6 dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 321.0
YHH3_k127_10220130_1 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000000000000000000004157 173.0
YHH3_k127_10220130_2 CoA binding domain - - - 0.0002789 50.0
YHH3_k127_10222264_0 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 - 3.1.3.5 0.000000000000000000000000001002 115.0
YHH3_k127_10222264_1 Phosphoesterase K07095 - - 0.000000000000000000001257 101.0
YHH3_k127_1023025_0 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000027 233.0
YHH3_k127_1023025_1 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000004089 164.0
YHH3_k127_1024896_0 Type IV leader peptidase family K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000001436 229.0
YHH3_k127_1024896_1 diguanylate cyclase - - - 0.0000000000000000000000000005323 116.0
YHH3_k127_10276435_0 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 372.0
YHH3_k127_10276435_1 PFAM aspartate ornithine carbamoyltransferase carbamoyl-P binding domain K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005224 287.0
YHH3_k127_10276435_2 Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant K02825 GO:0003674,GO:0003700,GO:0003824,GO:0004845,GO:0006139,GO:0006220,GO:0006221,GO:0006355,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0031323,GO:0031326,GO:0034641,GO:0034654,GO:0043094,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0090407,GO:0140110,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000000001692 219.0
YHH3_k127_10320089_0 Enoyl-(Acyl carrier protein) reductase - - - 0.000000000000000000000000000000000000000000002993 169.0
YHH3_k127_10320089_1 Pyridoxamine 5'-phosphate oxidase - - - 0.000000006512 61.0
YHH3_k127_1039111_0 PFAM Thiamine pyrophosphate K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007163 340.0
YHH3_k127_1039111_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0000000000000000000000000000000000000000000000000000006494 198.0
YHH3_k127_1039111_2 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000001715 146.0
YHH3_k127_1042417_0 PFAM Short-chain dehydrogenase reductase SDR K00046 - 1.1.1.69 0.00000000000000000000000000000000000001236 150.0
YHH3_k127_1042417_1 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K05898 - 1.3.99.4 0.000000000000000000000000000001295 127.0
YHH3_k127_10427589_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 501.0
YHH3_k127_10427589_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 381.0
YHH3_k127_10427589_10 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.0000000000000000000000000000000000000000000000000003511 187.0
YHH3_k127_10427589_11 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.0000000000000000000000000000000000000000000000006694 179.0
YHH3_k127_10427589_12 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000006142 174.0
YHH3_k127_10427589_13 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000000944 167.0
YHH3_k127_10427589_14 binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000902 158.0
YHH3_k127_10427589_15 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000000000000000000000000000002485 145.0
YHH3_k127_10427589_16 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.0000000000000000000000000000000000004406 142.0
YHH3_k127_10427589_17 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000006006 123.0
YHH3_k127_10427589_18 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000000002936 113.0
YHH3_k127_10427589_19 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000000000008439 103.0
YHH3_k127_10427589_2 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002192 347.0
YHH3_k127_10427589_20 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000116 103.0
YHH3_k127_10427589_21 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000001169 98.0
YHH3_k127_10427589_22 PFAM ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000001141 89.0
YHH3_k127_10427589_23 structural constituent of ribosome K02904 - - 0.00000000001896 66.0
YHH3_k127_10427589_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000007149 264.0
YHH3_k127_10427589_4 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001036 267.0
YHH3_k127_10427589_5 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002057 261.0
YHH3_k127_10427589_6 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.000000000000000000000000000000000000000000000000000000000000007803 228.0
YHH3_k127_10427589_7 50S ribosomal protein L4 K02926 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000001613 222.0
YHH3_k127_10427589_8 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.0000000000000000000000000000000000000000000000000000000001257 208.0
YHH3_k127_10427589_9 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000002646 187.0
YHH3_k127_10467231_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001729 521.0
YHH3_k127_10467231_1 Type II secretion system (T2SS), protein F K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003136 375.0
YHH3_k127_10467231_2 PFAM zinc finger, SWIM domain protein - - - 0.000000000000000006295 84.0
YHH3_k127_10562293_0 NeuB family K03856,K04516 - 2.5.1.54,5.4.99.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009821 425.0
YHH3_k127_10562293_1 Probably functions as a manganese efflux pump - - - 0.0000000000000000000000000000000000000000001273 166.0
YHH3_k127_10562293_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.00000000000000000000000000000000000000006504 158.0
YHH3_k127_10562293_3 - - - - 0.00000272 54.0
YHH3_k127_10604030_0 - K07018 - - 0.00000000000000000000000000000000000000000000000135 181.0
YHH3_k127_10604030_1 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.0000000000000000000000000000000000000000009715 164.0
YHH3_k127_10604030_2 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000001942 143.0
YHH3_k127_10696138_0 TIGRFAM molybdenum cofactor synthesis K03750,K07219 - 2.10.1.1 1.143e-201 640.0
YHH3_k127_10696138_1 Telomere recombination K04656 - - 0.0000000000000000000000000000000000000000000000000000000000000000004684 233.0
YHH3_k127_10718511_0 Histidine kinase - - - 0.00000000000000000000000000001094 134.0
YHH3_k127_10718511_1 PFAM Class I peptide chain release factor K15034 - - 0.0000000000061 68.0
YHH3_k127_1073653_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 9.091e-202 644.0
YHH3_k127_1073653_1 Participates in both transcription termination and antitermination K02600 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001443 409.0
YHH3_k127_1073653_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002694 275.0
YHH3_k127_1073653_3 Protein of unknown function (DUF448) K07742 - - 0.000000000000001189 81.0
YHH3_k127_10750000_0 Secondary thiamine-phosphate synthase enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001321 272.0
YHH3_k127_10750000_1 Carboxylesterase family K03929 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005651 283.0
YHH3_k127_10750000_2 COG0697 Permeases of the drug metabolite transporter (DMT) superfamily - - - 0.00000000000000000000000000000000000000000000000003379 186.0
YHH3_k127_10754475_0 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates K00179 - 1.2.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 374.0
YHH3_k127_10754475_1 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000385 254.0
YHH3_k127_10754475_2 branched-chain amino acid K01995 - - 0.000000000000000000000000000000000000000000001158 169.0
YHH3_k127_10770463_0 Radical SAM domain protein - - - 3.566e-202 643.0
YHH3_k127_10945007_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 6.575e-252 785.0
YHH3_k127_1094696_0 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 368.0
YHH3_k127_1094696_1 Belongs to the ABC transporter superfamily K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001513 366.0
YHH3_k127_1094696_2 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004921 351.0
YHH3_k127_1094696_3 dipeptide transport K02035 - - 0.0000000000000000000000000000000000000000000000000000003206 198.0
YHH3_k127_11104217_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.452e-266 843.0
YHH3_k127_11104217_1 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002656 433.0
YHH3_k127_11104217_2 phosphoglycerate mutase K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 417.0
YHH3_k127_11104217_3 MazG nucleotide pyrophosphohydrolase domain K02499 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001751 267.0
YHH3_k127_11104217_4 PFAM TPR repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000003381 185.0
YHH3_k127_11104217_5 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.00000000000000000000000000000000000000000000007978 176.0
YHH3_k127_11104217_6 ACT domain K00928 - 2.7.2.4 0.000000000000000000000000000000000000000000002613 168.0
YHH3_k127_11104217_7 4-oxalocrotonate tautomerase K01821 - 5.3.2.6 0.0000000002409 63.0
YHH3_k127_11104217_8 Psort location Cytoplasmic, score 7.50 - - - 0.0001341 45.0
YHH3_k127_11107276_0 Signal transducing histidine kinase homodimeric K03407 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001934 436.0
YHH3_k127_11107276_1 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 355.0
YHH3_k127_11107276_2 PFAM MCP methyltransferase, CheR-type K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000000000000003032 229.0
YHH3_k127_11107276_3 Two component signalling adaptor domain K03408 - - 0.0000000000000000000000000000000000000000002341 164.0
YHH3_k127_11107276_4 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains K03413 - - 0.000000000000000000000000000000000000009999 147.0
YHH3_k127_11107276_5 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000000000000000000000000000000008474 140.0
YHH3_k127_11107276_6 histidine kinase HAMP region domain protein K03406 - - 0.0000000000000000000000000001902 120.0
YHH3_k127_11107276_7 Chemotaxis protein CheC, inhibitor of MCP methylation K03410 - - 0.00000000000000000000000008845 117.0
YHH3_k127_11107276_8 PFAM Metal-dependent phosphohydrolase, HD - - - 0.000000000001049 77.0
YHH3_k127_11135374_0 Aldehyde ferredoxin K03738 - 1.2.7.5 0.0000000000000000000000001085 121.0
YHH3_k127_11143653_0 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004377 359.0
YHH3_k127_11143653_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000005864 250.0
YHH3_k127_11143653_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000001381 218.0
YHH3_k127_11143653_3 - - - - 0.000000000000000000000000000000000000000002231 162.0
YHH3_k127_11143653_4 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000882 117.0
YHH3_k127_11143653_5 ABC-2 family transporter protein K01992 - - 0.00000000000000000001949 98.0
YHH3_k127_11143653_6 - - - - 0.000000000001364 78.0
YHH3_k127_11143653_7 - - - - 0.00007138 47.0
YHH3_k127_11146823_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00015 - 1.1.1.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007948 274.0
YHH3_k127_11153923_0 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003925 252.0
YHH3_k127_11153923_1 Methyltransferase-like protein 6 K00599 GO:0001510,GO:0002946,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 - 0.0000003993 60.0
YHH3_k127_11154655_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 400.0
YHH3_k127_11154655_1 COG1053 Succinate dehydrogenase fumarate reductase, flavoprotein subunit K16051 - 1.3.99.5 0.000000000000000000000000000000000000000000000000004558 188.0
YHH3_k127_11171291_0 COG0145 N-methylhydantoinase A acetone carboxylase, beta subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 365.0
YHH3_k127_11175077_0 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 322.0
YHH3_k127_11175077_1 trans-aconitate 2-methyltransferase activity K00598,K02169 - 2.1.1.144,2.1.1.197 0.000000000000000000000000000000000000000000000000000000001758 205.0
YHH3_k127_11175077_2 HemY domain protein - - - 0.0000000000000000000001621 104.0
YHH3_k127_11175077_3 DegV family - - - 0.000000000000000000003052 98.0
YHH3_k127_11194708_0 NADH:flavin oxidoreductase / NADH oxidase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002554 367.0
YHH3_k127_11194708_1 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000009224 251.0
YHH3_k127_11194708_2 Dihydroxyacetone kinase family - - - 0.000000000000000000000002671 107.0
YHH3_k127_11247156_0 Catalyzes two subsequent steps in gluconeogenesis the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P) K01622 - 3.1.3.11,4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004576 563.0
YHH3_k127_11247156_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002985 333.0
YHH3_k127_11247156_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.000000000000000000000000000000000000000000000000000000004834 205.0
YHH3_k127_11247156_3 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000003117 199.0
YHH3_k127_11247156_4 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000001863 196.0
YHH3_k127_11247156_5 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000799 130.0
YHH3_k127_11265528_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000009922 227.0
YHH3_k127_11265528_1 TIM-barrel fold metal-dependent hydrolase K07045 - - 0.000000000000000000000000000000000000000000000008432 172.0
YHH3_k127_11265528_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.00000000000000000000000001085 114.0
YHH3_k127_11273759_0 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000001665 219.0
YHH3_k127_11273759_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000002558 214.0
YHH3_k127_11273759_2 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.000000000000000000000000000000000000000001375 160.0
YHH3_k127_11274360_0 Ferrous iron transport protein B K04759 - - 4.229e-215 681.0
YHH3_k127_11274360_1 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000066 287.0
YHH3_k127_11274360_2 FeoA K04758 - - 0.00000000000001116 76.0
YHH3_k127_11287935_0 response regulator, receiver - - - 0.00000000000000000000000000000000000000000000000000000009081 203.0
YHH3_k127_11287935_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000008457 139.0
YHH3_k127_11287935_2 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000008589 59.0
YHH3_k127_11323409_0 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000005008 288.0
YHH3_k127_11323409_1 FAD dependent oxidoreductase - - - 0.0000000000000000000000000000002497 131.0
YHH3_k127_11375954_0 PFAM FAD dependent oxidoreductase K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 557.0
YHH3_k127_11375954_1 tRNA synthetases class II (D, K and N) K04568 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 324.0
YHH3_k127_11375954_2 Alpha/beta hydrolase family K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001301 256.0
YHH3_k127_11375954_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000001764 252.0
YHH3_k127_11375954_4 Molybdenum cofactor synthesis domain - - - 0.000000000000000000000000000000000000000000000000000000000000113 216.0
YHH3_k127_11375954_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000002428 214.0
YHH3_k127_11375954_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.0000000000000000000000000000000000000000000000000007504 191.0
YHH3_k127_11375954_7 Yqey-like protein K09117 - - 0.000000000000000000000000000001709 128.0
YHH3_k127_11375954_8 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000004375 96.0
YHH3_k127_11375954_9 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000003191 74.0
YHH3_k127_11549055_0 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009549 291.0
YHH3_k127_11549055_1 Bacterial dnaA protein K02315 - - 0.000000000000000000000000000000000000000000000000000000000000000000002138 241.0
YHH3_k127_11554298_0 Acetolactate synthase, large subunit K01652 - 2.2.1.6 8.851e-218 691.0
YHH3_k127_11554298_1 PFAM Alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001128 280.0
YHH3_k127_11570753_0 PFAM Cyclic nucleotide-binding K10914 - - 0.0000000000000000000000000000000000000005572 153.0
YHH3_k127_11570753_1 Involved in the biosynthesis of porphyrin-containing compound - - - 0.00000000000000000000000003542 113.0
YHH3_k127_11570753_2 4Fe-4S binding domain - - - 0.00000009682 56.0
YHH3_k127_11576984_0 - - - - 0.00006006 55.0
YHH3_k127_11581973_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000001099 206.0
YHH3_k127_11581973_1 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00001949 49.0
YHH3_k127_11603608_0 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002448 294.0
YHH3_k127_11603608_1 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.00000000000000000000000000000000000000000000000000000000000000003566 229.0
YHH3_k127_11603608_2 CoA-transferase family III K07544 - 2.8.3.15 0.00000000000000000000000000004954 123.0
YHH3_k127_11607515_0 B12 binding domain - - - 0.00000000000000000000000000000000000000000000000000000005455 201.0
YHH3_k127_11607515_1 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.000000000000000000000000000002503 126.0
YHH3_k127_11617296_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000003423 138.0
YHH3_k127_11617296_1 NAD(P)-binding Rossmann-like domain - - - 0.0000000000002848 78.0
YHH3_k127_11619709_0 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K00124,K00335,K00355,K18331 - 1.12.1.3,1.6.5.2,1.6.5.3 4.995e-298 937.0
YHH3_k127_11619709_1 Molybdopterin oxidoreductase Fe4S4 domain K00123,K22341 - 1.17.1.11,1.17.1.9 4.156e-223 721.0
YHH3_k127_11619709_2 Response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000001931 218.0
YHH3_k127_11619709_3 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000007068 179.0
YHH3_k127_11619709_4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000004819 177.0
YHH3_k127_11619709_5 helix_turn_helix, Lux Regulon K11618 - - 0.0000000000000000000000000000005988 132.0
YHH3_k127_11646179_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0000910,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0022607,GO:0032153,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0051258,GO:0051301,GO:0065003,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007979 301.0
YHH3_k127_11646179_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 295.0
YHH3_k127_11646179_2 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 GO:0000166,GO:0000287,GO:0000910,GO:0000921,GO:0000935,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0022607,GO:0030428,GO:0031106,GO:0032153,GO:0032155,GO:0032185,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0040007,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0045787,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051258,GO:0051301,GO:0051726,GO:0065003,GO:0065007,GO:0070925,GO:0071840,GO:0071944,GO:0090529,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 294.0
YHH3_k127_11646179_3 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.0000000000000000000000000000000000000003196 153.0
YHH3_k127_11646179_4 - - - - 0.00001502 55.0
YHH3_k127_11657207_0 L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000000000000000000000000000000000000000007625 242.0
YHH3_k127_11657207_1 alcohol dehydrogenase K00121,K00153 - 1.1.1.1,1.1.1.284,1.1.1.306 0.0000000000000000000001896 100.0
YHH3_k127_11668313_0 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 444.0
YHH3_k127_11668313_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000001409 94.0
YHH3_k127_11668313_2 PFAM ABC transporter related - - - 0.0000004165 51.0
YHH3_k127_11715542_0 Rubredoxin-like zinc ribbon domain (DUF35_N) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005071 250.0
YHH3_k127_11715542_1 L-carnitine dehydratase bile acid-inducible protein F - - - 0.0000000000000000000000000000000001673 138.0
YHH3_k127_11753046_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 450.0
YHH3_k127_11753046_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.0000000000000000000000002129 109.0
YHH3_k127_1175404_0 Peptidase dimerisation domain K01438 - 3.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002924 313.0
YHH3_k127_1175404_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000002495 210.0
YHH3_k127_11783926_0 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007377 353.0
YHH3_k127_11783926_1 with different specificities (related to short-chain alcohol K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000004788 208.0
YHH3_k127_11783926_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000001185 93.0
YHH3_k127_11869544_0 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 418.0
YHH3_k127_11869544_1 DnaJ molecular chaperone homology domain K05516 - - 0.00000000000000000000000000000000000000000000000000002104 193.0
YHH3_k127_11879386_0 Transposase IS200 like K07491 - - 0.00000000000000000000000000000000000000000000000000000000003334 211.0
YHH3_k127_11903288_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004436 278.0
YHH3_k127_11976320_0 PFAM Polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000007373 170.0
YHH3_k127_11976320_1 Polysaccharide biosynthesis protein - - - 0.00002251 52.0
YHH3_k127_12032766_0 GH3 auxin-responsive promoter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001757 479.0
YHH3_k127_12032766_1 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000004244 235.0
YHH3_k127_12032766_2 Winged helix-turn-helix - - - 0.00000000000000000000001878 103.0
YHH3_k127_12032766_3 - - - - 0.00000000000001077 80.0
YHH3_k127_12032766_4 GAF domain K02482 - 2.7.13.3 0.00000000002394 77.0
YHH3_k127_12057977_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 464.0
YHH3_k127_12057977_1 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000001456 97.0
YHH3_k127_12057977_2 COG0474 Cation transport ATPase K01537 - 3.6.3.8 0.000000000000000001471 90.0
YHH3_k127_12060883_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008586 552.0
YHH3_k127_12060883_1 Bacterial transferase hexapeptide repeat K04042 - 2.3.1.157,2.7.7.23 0.000000000000000000000000000000000000000000000000000000000000001261 235.0
YHH3_k127_12060883_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.000000000000000000000003435 109.0
YHH3_k127_12095818_0 diguanylate cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004517 423.0
YHH3_k127_12095818_1 Type IV leader peptidase family K02654 - 3.4.23.43 0.00000000000000002227 83.0
YHH3_k127_12112298_0 NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding K00335 - 1.6.5.3 4.231e-251 790.0
YHH3_k127_12112298_1 AAA domain K07321 - - 0.000000000000000000000000000000000000000000000000000000000000004463 224.0
YHH3_k127_12112298_2 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000007242 173.0
YHH3_k127_12112298_3 Domain of unknown function (DUF3786) - - - 0.0000428 51.0
YHH3_k127_12118134_0 xylulokinase activity K00854 - 2.7.1.17 0.000000004502 66.0
YHH3_k127_12121434_0 TIM-barrel fold metal-dependent hydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007822 368.0
YHH3_k127_12121434_1 formate C-acetyltransferase activity K00656 - 2.3.1.54 0.000000000000000000000000000000000000000879 151.0
YHH3_k127_12121434_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.00000000000000000000000001611 114.0
YHH3_k127_12121434_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000001735 91.0
YHH3_k127_12129649_0 Calcineurin-like phosphoesterase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000438 250.0
YHH3_k127_12129649_1 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.00000000000001949 83.0
YHH3_k127_12129649_2 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0009159 48.0
YHH3_k127_12148896_0 Iron-sulfur cluster-binding protein K00782 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000329 407.0
YHH3_k127_12148896_1 cluster binding protein - - - 0.00006045 46.0
YHH3_k127_12172675_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005275 493.0
YHH3_k127_12172675_1 GYD domain - - - 0.00000000000000000000000000000000004222 138.0
YHH3_k127_12176466_0 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006459 280.0
YHH3_k127_12176466_1 4Fe-4S dicluster domain - - - 0.000000000000000000000000000000001195 132.0
YHH3_k127_12176466_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000003278 104.0
YHH3_k127_12176466_3 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.0000000003523 60.0
YHH3_k127_12176466_4 PFAM Colicin V production protein K03558 - - 0.0000004479 58.0
YHH3_k127_12230592_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001094 454.0
YHH3_k127_12230592_1 PBP superfamily domain K02040 - - 0.0000008717 57.0
YHH3_k127_12251926_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000002716 181.0
YHH3_k127_12251926_1 NAD-binding protein - - - 0.000000000000000000000000000000871 128.0
YHH3_k127_12251926_2 PAS fold - - - 0.000064 54.0
YHH3_k127_12312081_0 Elongator protein 3, MiaB family, Radical SAM - - - 6.19e-214 679.0
YHH3_k127_12312081_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 3.4.21.53 0.00000000000000000000000000000000000000000003042 162.0
YHH3_k127_12349960_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001804 424.0
YHH3_k127_12387018_0 binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 4.565e-231 735.0
YHH3_k127_12387018_1 4Fe-4S ferredoxin, iron-sulfur binding K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000000000000000000000000000000000000000000000000000004922 248.0
YHH3_k127_12389988_0 FAD dependent oxidoreductase - - - 2.378e-257 803.0
YHH3_k127_12389988_1 beta-lactamase - - - 1.239e-205 650.0
YHH3_k127_12389988_2 Sodium:sulfate symporter transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005433 585.0
YHH3_k127_12389988_3 Male sterility protein K21793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002265 410.0
YHH3_k127_12389988_4 Sulphur transport K07112 - - 0.000000000000000000000000000000000000000000000000000000000000008277 220.0
YHH3_k127_12389988_5 Sulphur transport K07112 - - 0.0000000000000000000375 93.0
YHH3_k127_12389988_6 PFAM helicase domain protein - - - 0.000001529 50.0
YHH3_k127_12395361_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 520.0
YHH3_k127_12454016_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 GO:0003674,GO:0003824,GO:0003916,GO:0003917,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016853,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360 5.99.1.2 7.808e-227 722.0
YHH3_k127_12454016_1 DNA recombination-mediator protein A K04096 - - 0.00000002666 55.0
YHH3_k127_12466135_0 Putative TM nitroreductase - - - 0.00000000000000000000000000000000000000000000005425 173.0
YHH3_k127_12466257_0 PFAM Short-chain dehydrogenase reductase SDR K00046 - 1.1.1.69 0.000000000000000000000000000000000000000000000000000000000000003322 226.0
YHH3_k127_12466257_1 NADH flavin K00219 - 1.3.1.34 0.00000000000000000000000000000000000000000000000000000000000007166 226.0
YHH3_k127_12466257_2 FAD dependent oxidoreductase - - - 0.00000000000000000007179 91.0
YHH3_k127_12466257_3 - - - - 0.00001528 57.0
YHH3_k127_12468416_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 9.186e-229 720.0
YHH3_k127_12468416_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002136 433.0
YHH3_k127_12468416_2 - - - - 0.0000000000000000000000000000000000000000000000000000000004596 211.0
YHH3_k127_12468416_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000000000000001392 146.0
YHH3_k127_12468416_4 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000006831 138.0
YHH3_k127_12468416_5 Putative regulatory protein - - - 0.00000000000000002315 85.0
YHH3_k127_12492281_0 - - - - 0.00000000000444 68.0
YHH3_k127_12492281_1 Cell wall-active antibiotics response 4TMS YvqF - - - 0.000004772 53.0
YHH3_k127_12496603_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 456.0
YHH3_k127_12496603_1 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III C terminal K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005266 427.0
YHH3_k127_12496603_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002856 421.0
YHH3_k127_12496603_3 COG1024 Enoyl-CoA hydratase carnithine racemase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006977 386.0
YHH3_k127_12496603_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006692 386.0
YHH3_k127_12496603_5 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005871 359.0
YHH3_k127_12496603_6 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 310.0
YHH3_k127_12496603_7 PFAM 2-nitropropane dioxygenase NPD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 307.0
YHH3_k127_12496603_8 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000000000000000000009626 135.0
YHH3_k127_12496603_9 PFAM Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.000000000002159 79.0
YHH3_k127_12518621_0 PFAM UBA THIF-type NAD FAD binding protein K21029 - 2.7.7.80 0.0000000000000000000000000000000000000000000000000000000000000000000000000252 258.0
YHH3_k127_12518621_1 PFAM NADPH-dependent FMN reductase - - - 0.00000000000000000000000000000000000000000000000000000000003865 216.0
YHH3_k127_12518621_2 Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000001335 207.0
YHH3_k127_12518621_3 CoA-binding domain protein K06929 - - 0.00000000000000000000000000000000000000000001273 167.0
YHH3_k127_12518621_4 Transcriptional regulator, Crp Fnr family K10914,K21563 - - 0.0000000000000000000000001737 108.0
YHH3_k127_12518621_5 Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) - - - 0.000000000000000000004687 100.0
YHH3_k127_1252014_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K07516 - 1.1.1.35 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 430.0
YHH3_k127_12522189_0 Acyl-CoA dehydrogenase, middle domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006525 239.0
YHH3_k127_12531095_0 Dehydrogenase K00076 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008709,GO:0009056,GO:0009987,GO:0016043,GO:0016054,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022607,GO:0030573,GO:0032787,GO:0033764,GO:0042802,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072329,GO:1901360,GO:1901575,GO:1901615 1.1.1.159 0.00000000000000000000000000000000000000000000000000000000003687 215.0
YHH3_k127_12531095_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000001581 83.0
YHH3_k127_12541317_0 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007318 302.0
YHH3_k127_12551199_0 Elongation factor G C-terminus K06207 - - 3.421e-273 852.0
YHH3_k127_12551199_1 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000128 246.0
YHH3_k127_12551199_2 RDD family - - - 0.000000000000000000000000000000000000003922 151.0
YHH3_k127_12551199_3 Alpha beta hydrolase - - - 0.0000000000000000000000000008635 120.0
YHH3_k127_12551199_4 ubiE/COQ5 methyltransferase family - - - 0.000000000001387 78.0
YHH3_k127_12553969_0 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003549 258.0
YHH3_k127_12553969_1 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.0000000000000000000000000000000000001126 148.0
YHH3_k127_12553969_2 diguanylate cyclase - - - 0.00000002884 63.0
YHH3_k127_12571080_0 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008147 420.0
YHH3_k127_12571080_1 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003899 344.0
YHH3_k127_12571080_2 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008675 328.0
YHH3_k127_12571080_3 NAD(P)-binding Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000337 233.0
YHH3_k127_12571080_4 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000004015 208.0
YHH3_k127_12571080_5 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000001004 151.0
YHH3_k127_12573197_0 glycine hydroxymethyltransferase activity K00600 GO:0001505,GO:0003674,GO:0003824,GO:0004372,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006546,GO:0006563,GO:0006565,GO:0006730,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009070,GO:0009071,GO:0009987,GO:0016053,GO:0016054,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019264,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042133,GO:0042135,GO:0042136,GO:0042737,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0065007,GO:0065008,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 2.1.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004155 527.0
YHH3_k127_12573197_1 Thymidylate synthase K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 323.0
YHH3_k127_12573197_2 competence protein - - - 0.00000000000000000000000000000000000000000000000000000001674 205.0
YHH3_k127_12573197_3 Single-strand binding protein family K03111 - - 0.0000000000000000000000000000000000000000000000003023 178.0
YHH3_k127_12573197_4 dUTPase K01520 GO:0000287,GO:0003674,GO:0003824,GO:0004170,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006163,GO:0006195,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009147,GO:0009149,GO:0009151,GO:0009155,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009215,GO:0009217,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035862,GO:0035863,GO:0035870,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072528,GO:0072529,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.6.1.23 0.00000000000000000000000000000004972 131.0
YHH3_k127_12573197_5 - - - - 0.000000000000000000000000000003005 120.0
YHH3_k127_12573197_6 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000001319 115.0
YHH3_k127_12573197_7 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.000000000000000004216 87.0
YHH3_k127_12573197_8 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000114 55.0
YHH3_k127_12573197_9 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase - - - 0.0002911 52.0
YHH3_k127_1260926_0 VWA containing CoxE family protein K09989 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 341.0
YHH3_k127_1260926_1 FMN-dependent dehydrogenase K00459 - 1.13.12.16 0.00000000000000000000000000000000000000000000000000009375 199.0
YHH3_k127_1260926_2 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.0000000000000000000000000001054 121.0
YHH3_k127_1260926_3 Belongs to the aldehyde dehydrogenase family K00128,K00131 - 1.2.1.3,1.2.1.9 0.0000000000000000000149 95.0
YHH3_k127_12639510_0 Carbamoyltransferase C-terminus K00612 - - 2.953e-194 619.0
YHH3_k127_12639510_1 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.000000000000000000000000000000000000002474 151.0
YHH3_k127_12674582_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000004749 194.0
YHH3_k127_12674582_1 Protein of unknown function (DUF1616) - - - 0.00000000000000000000000000000000000000001112 166.0
YHH3_k127_12684622_0 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003351 258.0
YHH3_k127_12684622_1 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000006355 248.0
YHH3_k127_12684622_2 glutamate synthase activity - - - 0.000000000000000000000000000000000000000000000000000005176 195.0
YHH3_k127_12729070_0 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.000000000000000000000000000000000000000000287 164.0
YHH3_k127_12729070_1 ATP-grasp domain - - - 0.00000000000000000000000000000000006745 139.0
YHH3_k127_12729070_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000003139 133.0
YHH3_k127_12754607_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 3.461e-228 723.0
YHH3_k127_12754607_1 Belongs to the alpha-IPM synthase homocitrate synthase family K02594 - 2.3.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 341.0
YHH3_k127_12804173_0 Anion-transporting ATPase K01551 - 3.6.3.16 0.00000000000000000000000000000000000000000000000000000000001541 217.0
YHH3_k127_12804173_1 Formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000006653 191.0
YHH3_k127_12804173_2 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.0000000000000000001785 87.0
YHH3_k127_1376955_0 MscS Mechanosensitive ion channel - - - 0.00000000000000009077 83.0
YHH3_k127_1376955_1 monooxygenase activity K00688 - 2.4.1.1 0.0000000000000008905 78.0
YHH3_k127_1376955_2 Domain of unknown function (DUF362) - - - 0.000000000008041 66.0
YHH3_k127_1376955_3 Short C-terminal domain K08982 - - 0.00000002256 58.0
YHH3_k127_1397050_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 1.939e-258 818.0
YHH3_k127_1397050_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004968 434.0
YHH3_k127_1397050_2 Flavodoxin-like fold - - - 0.00000000000000000000000000000000000000000001229 171.0
YHH3_k127_1397050_3 Acetylornithine deacetylase K01439 - 3.5.1.18 0.0000000000000000000000000000000000000002323 166.0
YHH3_k127_1402659_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 3.666e-208 658.0
YHH3_k127_1412137_0 PFAM Uncharacterised BCR, COG1649 - - - 0.0000000005451 71.0
YHH3_k127_1413322_0 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 448.0
YHH3_k127_1413322_1 3-hydroxyacyl-CoA dehydrogenase domain protein K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 317.0
YHH3_k127_1413322_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000002362 199.0
YHH3_k127_1426196_0 Domains REC, sigma54 interaction, HTH8 - - - 0.0000000000000155 84.0
YHH3_k127_1427808_0 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003046 259.0
YHH3_k127_1427808_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000000001613 131.0
YHH3_k127_1438418_0 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006786 439.0
YHH3_k127_1438418_1 ERG2 and Sigma1 receptor like protein K20719 - - 0.0000000000000000000000000000000000000000000000009673 180.0
YHH3_k127_1438418_2 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.00000007742 54.0
YHH3_k127_1438674_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1616.0
YHH3_k127_1438674_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1369.0
YHH3_k127_1438674_2 acyl-CoA transferases carnitine dehydratase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 329.0
YHH3_k127_1438674_3 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 306.0
YHH3_k127_1438674_4 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.000000000000000000000000000000000000000000000006829 175.0
YHH3_k127_1445895_0 PFAM PQQ enzyme repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002793 297.0
YHH3_k127_1445895_1 recombinase activity - - - 0.00000005855 57.0
YHH3_k127_1445895_2 Phosphopantetheine attachment site - - - 0.00001833 57.0
YHH3_k127_1445895_3 Recombinase zinc beta ribbon domain - - - 0.00006125 48.0
YHH3_k127_1454452_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002183 427.0
YHH3_k127_1454452_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.00000000000000000005777 102.0
YHH3_k127_1455867_0 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001776 249.0
YHH3_k127_1455867_1 PFAM ATPase, BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000000000000000000005067 188.0
YHH3_k127_1455867_2 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000001317 190.0
YHH3_k127_1463296_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 0.00000000000000000000000000000000000000000000000000000000000000006069 231.0
YHH3_k127_1463296_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K00001,K00008 - 1.1.1.1,1.1.1.14 0.0000000000000000004593 89.0
YHH3_k127_1463524_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000704 370.0
YHH3_k127_1463524_1 Domain present in PSD-95, Dlg, and ZO-1/2. K11749 - - 0.00000000000000000000000000000000000000000000000000000194 207.0
YHH3_k127_1463524_2 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.00000000000000000000001449 102.0
YHH3_k127_1481251_0 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000002527 214.0
YHH3_k127_1481251_1 Acyl CoA acetate 3-ketoacid CoA transferase beta subunit K01032 - 2.8.3.6 0.00000000000000000000002507 102.0
YHH3_k127_1481251_2 COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) K17763 - - 0.000000000002673 76.0
YHH3_k127_1490325_0 NADH flavin oxidoreductase NADH oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 528.0
YHH3_k127_1490325_1 TIGRFAM signal peptidase I, bacterial type K03100 - 3.4.21.89 0.00000000000000000000000000000000000000001524 160.0
YHH3_k127_1490325_2 PFAM Rubredoxin - - - 0.00000000000006239 71.0
YHH3_k127_1490325_3 - - - - 0.0000000007279 67.0
YHH3_k127_1499973_0 C-terminal, D2-small domain, of ClpB protein K03696 - - 0.0 1164.0
YHH3_k127_1499973_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 408.0
YHH3_k127_1499973_2 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000166 376.0
YHH3_k127_1506900_0 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000002986 85.0
YHH3_k127_1506900_1 Q COG1233 Phytoene dehydrogenase and related proteins - - - 0.00000000001447 75.0
YHH3_k127_1519591_0 SMART Elongator protein 3 MiaB NifB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000089 473.0
YHH3_k127_1519591_1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit K00332 - 1.6.5.3 0.00000000000000000000000000000000004687 138.0
YHH3_k127_1538696_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005 381.0
YHH3_k127_1538696_1 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006027 340.0
YHH3_k127_1538696_2 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.000000000000000000000000000000000000000000000000000000000000000000305 236.0
YHH3_k127_1538696_3 MaoC like domain - - - 0.000000000000000000000000000006658 121.0
YHH3_k127_1538696_4 COG2057 Acyl CoA acetate 3-ketoacid CoA transferase, beta subunit K01035 - 2.8.3.8,2.8.3.9 0.000008409 48.0
YHH3_k127_1541940_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002271 357.0
YHH3_k127_1541940_1 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000003154 253.0
YHH3_k127_1541940_2 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.00000000000000001276 87.0
YHH3_k127_1544318_0 Predicted permease K07089 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006997 333.0
YHH3_k127_1544318_1 Thioredoxin domain - - - 0.0000000000000000000000286 101.0
YHH3_k127_1544318_2 Rdx family K07401 - - 0.000008518 51.0
YHH3_k127_1589725_0 Dak1_2 K07030 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 399.0
YHH3_k127_1590798_0 leucyl-tRNA aminoacylation K01869 - 6.1.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002828 330.0
YHH3_k127_1590798_1 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000002071 242.0
YHH3_k127_1611993_0 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005943 280.0
YHH3_k127_1611993_1 acetyltransferase K18815 - 2.3.1.82 0.000000477 56.0
YHH3_k127_1633232_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002431 415.0
YHH3_k127_1633232_1 PAC2 family K07159 - - 0.000000000000000000000000000000009957 130.0
YHH3_k127_1643628_0 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000002451 223.0
YHH3_k127_1643628_1 PFAM short-chain dehydrogenase reductase SDR - - - 0.000000000000000002124 87.0
YHH3_k127_1661729_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 8.881e-219 689.0
YHH3_k127_1661729_1 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000003805 186.0
YHH3_k127_1684321_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000004467 186.0
YHH3_k127_1684321_1 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000000005628 128.0
YHH3_k127_1738355_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000992 249.0
YHH3_k127_1738355_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000001187 70.0
YHH3_k127_1839010_0 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007166 294.0
YHH3_k127_1839010_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000000000000000000000000000002738 138.0
YHH3_k127_183983_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.054e-231 732.0
YHH3_k127_1848122_0 DUF35 OB-fold domain, acyl-CoA-associated K01641 - 2.3.3.10 0.00000000000000000000000000000000000000000000000000004971 194.0
YHH3_k127_1848122_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000003901 163.0
YHH3_k127_18664_0 Transposase, Mutator family - - - 0.0000000000002254 75.0
YHH3_k127_18805_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001817 289.0
YHH3_k127_1884540_0 cysteinyl-tRNA aminoacylation K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001165 550.0
YHH3_k127_1884540_1 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.00000000000000000000000000000000000000000000000000000000000000007406 229.0
YHH3_k127_1884540_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000192 227.0
YHH3_k127_1884540_3 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000002651 211.0
YHH3_k127_1884540_4 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000000000000003539 194.0
YHH3_k127_1884540_5 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.000000000000000000000000000000000003454 141.0
YHH3_k127_1884540_6 Transcriptional regulator, MarR family - - - 0.000003464 56.0
YHH3_k127_1884540_7 - - - - 0.0001603 46.0
YHH3_k127_1885514_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 392.0
YHH3_k127_1885514_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0002699 44.0
YHH3_k127_1902175_0 elongation factor G K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003938 567.0
YHH3_k127_1902175_1 PFAM Radical SAM domain protein K04070 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000002677 259.0
YHH3_k127_1932490_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001006 361.0
YHH3_k127_1932490_1 NlpC/P60 family - - - 0.00001807 54.0
YHH3_k127_1933969_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 469.0
YHH3_k127_1991394_0 Two component transcriptional regulator, LuxR family - - - 0.0000000000000000000000000006678 123.0
YHH3_k127_1991394_1 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000007545 60.0
YHH3_k127_1997470_0 Belongs to the enoyl-CoA hydratase isomerase family K01692,K01715 - 4.2.1.17 0.0000000000000000000000000000000000000000000000000000000000146 215.0
YHH3_k127_1997470_1 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.00000000000000000000000000000000000000000000000000001568 192.0
YHH3_k127_1997470_2 - - - - 0.00000000000000000000000000133 113.0
YHH3_k127_2008506_0 phosphorelay sensor kinase activity - - - 0.00000000000002141 79.0
YHH3_k127_2008506_1 Thi4 family - - - 0.00000000000002549 78.0
YHH3_k127_2008506_2 Two component transcriptional regulator, LuxR family - - - 0.0000000001734 68.0
YHH3_k127_2021793_0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 1.041e-202 643.0
YHH3_k127_2021793_1 NeuB family K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 483.0
YHH3_k127_2021793_2 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003778 423.0
YHH3_k127_2021793_3 GPR1/FUN34/yaaH family K07034 - - 0.000000000000000000000000000000000000000000006714 170.0
YHH3_k127_2021793_4 Aminotransferase class-V - - - 0.00000000000000000000000000002161 120.0
YHH3_k127_2021793_5 4Fe-4S dicluster domain - - - 0.000000000000000000000000002221 116.0
YHH3_k127_2021793_6 ACT domain - - - 0.000000000000003885 76.0
YHH3_k127_2032213_0 tRNA synthetases class I (E and Q), anti-codon binding domain K01886 - 6.1.1.18 1.259e-282 878.0
YHH3_k127_2033258_0 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000001385 171.0
YHH3_k127_2033258_1 spore germination K03605 - - 0.0000000000000000000000000000000000000003639 156.0
YHH3_k127_2033258_2 PFAM nitrogen-fixing NifU domain protein - - - 0.000000000000000000000000007313 112.0
YHH3_k127_2033258_3 Putative zinc- or iron-chelating domain - - - 0.000000000000000007649 89.0
YHH3_k127_2033258_4 Regulatory protein, FmdB family - - - 0.00000002806 58.0
YHH3_k127_2033258_5 NifU-like domain - - - 0.0005787 45.0
YHH3_k127_2058736_0 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000591 237.0
YHH3_k127_2058736_1 dTDP biosynthetic process K00560,K00943 - 2.1.1.45,2.7.4.9 0.0000000000000000000000000000000000000000000000000000000000000002716 242.0
YHH3_k127_2058736_2 transferase activity, transferring amino-acyl groups - - - 0.000000000000000000000000000000000000002297 156.0
YHH3_k127_2058736_3 Protein of unknown function (DUF354) K09726 - - 0.00000000000000000000000000001443 131.0
YHH3_k127_2061851_0 electron transfer flavoprotein, alpha subunit K03522,K22432 - 1.3.1.108 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 297.0
YHH3_k127_2061851_1 PFAM DAHP synthetase I KDSA K03856 - 2.5.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002046 279.0
YHH3_k127_2061851_2 electron transfer flavoprotein K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001872 258.0
YHH3_k127_2061851_3 PFAM Chorismate mutase of the AroH class K06208 - 5.4.99.5 0.00000000000000000000000000000000000005792 149.0
YHH3_k127_2061851_4 Elongation factor Tu domain 2 K02355 - - 0.00000000000000000000000000000006293 126.0
YHH3_k127_2166947_0 NADH ubiquinone oxidoreductase, NADH-binding (51 kD) subunit K00335,K18331 - 1.12.1.3,1.6.5.3 1.681e-242 765.0
YHH3_k127_2166947_1 Molybdopterin oxidoreductase, Fe4S4 K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 333.0
YHH3_k127_2166947_2 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000001534 61.0
YHH3_k127_2325442_0 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001945 464.0
YHH3_k127_2325442_1 Leucine Rich repeats (2 copies) - - - 0.0000000000000000000000000000000000000000000004314 180.0
YHH3_k127_2325442_2 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 - 2.5.1.17 0.0004217 42.0
YHH3_k127_2327160_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000001961 253.0
YHH3_k127_2327160_1 CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000001214 244.0
YHH3_k127_2328394_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008926 554.0
YHH3_k127_2328394_1 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 406.0
YHH3_k127_2328394_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 353.0
YHH3_k127_2328394_3 histidyl-tRNA aminoacylation K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 338.0
YHH3_k127_2328394_4 Belongs to the OMP decarboxylase family. Type 2 subfamily K01591,K13421 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.4.2.10,4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 306.0
YHH3_k127_2328394_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.0000000000000000000000000000000000000000000000000000000000000000000003609 240.0
YHH3_k127_2328394_6 Lumazine binding domain K00793 - 2.5.1.9 0.0000000000000000000000000000000000000000000000000000000000000000001842 237.0
YHH3_k127_2328394_7 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.0000000000000000000000000000000000005923 144.0
YHH3_k127_2328394_8 peptidase U32 - - - 0.0000000000000000001234 91.0
YHH3_k127_2339212_0 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 299.0
YHH3_k127_2339212_1 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.000000000000000000000000000000000000000000000000000000000000000000987 240.0
YHH3_k127_2339212_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000001596 124.0
YHH3_k127_2348963_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002287 389.0
YHH3_k127_2348963_1 Belongs to the enoyl-CoA hydratase isomerase family K07546,K08299,K15866 - 4.2.1.149,5.3.3.18 0.00000000000000000000000000000000000000000000000000000000000000002564 232.0
YHH3_k127_2348963_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000004878 214.0
YHH3_k127_2348963_3 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000002953 214.0
YHH3_k127_2350585_0 PFAM NADH flavin oxidoreductase NADH oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000322 287.0
YHH3_k127_2350585_1 RDD family - - - 0.000000000000000000000000003579 118.0
YHH3_k127_2385990_0 Conserved carboxylase domain K01960 - 6.4.1.1 1.986e-223 706.0
YHH3_k127_2385990_1 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant K03465 - 2.1.1.148 0.0000000000000000000000000000000000000000000000000000000000000000000000002389 253.0
YHH3_k127_2385990_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000001508 197.0
YHH3_k127_2385990_3 Involved in the import of queuosine (Q) precursors, required for Q precursor salvage K09125 - - 0.0000000000000000000000000000000000000000702 160.0
YHH3_k127_2385990_4 PFAM response regulator receiver - - - 0.000000000000000000000003009 107.0
YHH3_k127_2385990_5 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.0000000000000000002229 96.0
YHH3_k127_2385990_6 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.00006735 46.0
YHH3_k127_239765_0 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006197 466.0
YHH3_k127_239765_1 TIGRFAM PAS sensor protein - - - 0.0000000000000000000000000000000000000005208 164.0
YHH3_k127_239765_2 Transcriptional regulatory protein, C terminal K07658 - - 0.00000000000000000013 94.0
YHH3_k127_2405100_0 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008384 348.0
YHH3_k127_2405100_1 Short chain dehydrogenase K00059 - 1.1.1.100 0.000000000000000000000000000000000000000000000000000000000000000000000000002349 261.0
YHH3_k127_2405100_2 Enoyl-CoA hydratase/isomerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002598 253.0
YHH3_k127_2405100_3 - - - - 0.00002632 53.0
YHH3_k127_2431902_0 Probable zinc-ribbon domain - - - 0.000000000000000000000000000000000001561 140.0
YHH3_k127_2431902_1 PKD domain - - - 0.000000000007587 74.0
YHH3_k127_2439728_0 Pfam:Cache_2 K03406 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001373 269.0
YHH3_k127_247358_0 2-oxoacid dehydrogenases acyltransferase (catalytic domain) - - - 0.0000000000000000000000000000000000000004474 158.0
YHH3_k127_247358_1 3'-5' exonuclease activity K03547 - - 0.000000000000000000000000000000000003192 139.0
YHH3_k127_2478145_0 Benzoyl-CoA reductase 2-hydroxyglutaryl-CoA dehydratase subunit BcrC BadD HgdB - - - 0.0000000000000000000000000000000000000000000000000008677 192.0
YHH3_k127_2478145_1 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000001913 196.0
YHH3_k127_2485004_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000004654 153.0
YHH3_k127_2485004_1 Protein of unknown function (DUF3344) - - - 0.00000008143 65.0
YHH3_k127_249647_0 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 445.0
YHH3_k127_249647_1 Histidine kinase K00936,K02030 - 2.7.13.3 0.000000000000000000000000000000000000000000000105 173.0
YHH3_k127_2512037_0 Ftsk_gamma K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 570.0
YHH3_k127_2512037_1 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008959 450.0
YHH3_k127_2512037_10 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.00000000000000000000000000000000000000000000000000000000001091 214.0
YHH3_k127_2512037_11 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000006292 194.0
YHH3_k127_2512037_12 coenzyme F420-1:gamma-L-glutamate ligase activity - - - 0.00000000000000000000000000000000000000000000000000001024 195.0
YHH3_k127_2512037_13 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000002466 150.0
YHH3_k127_2512037_14 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.0003959 49.0
YHH3_k127_2512037_15 Belongs to the CDS family K00981 - 2.7.7.41 0.00055 46.0
YHH3_k127_2512037_2 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005896 364.0
YHH3_k127_2512037_3 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 329.0
YHH3_k127_2512037_4 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008489 320.0
YHH3_k127_2512037_5 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002511 315.0
YHH3_k127_2512037_6 phosphoenolpyruvate carboxykinase (ATP) activity K01610 - 4.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002964 325.0
YHH3_k127_2512037_7 Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009642 289.0
YHH3_k127_2512037_8 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009853 284.0
YHH3_k127_2512037_9 UreE urease accessory protein, C-terminal domain K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000003724 243.0
YHH3_k127_2525451_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 2.5e-267 840.0
YHH3_k127_2525451_1 Catalyzes the attachment of glycine to tRNA(Gly) K01880 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0016874,GO:0016875,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 481.0
YHH3_k127_2525451_2 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000004984 214.0
YHH3_k127_2565776_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 9.876e-247 774.0
YHH3_k127_2772658_0 Protein of unknown function (DUF1385) K09153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 298.0
YHH3_k127_2772658_1 Ribosomal L27 protein K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000004707 135.0
YHH3_k127_2772658_2 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000005802 128.0
YHH3_k127_2772658_3 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000013 113.0
YHH3_k127_2780600_0 Glycosyltransferase family 20 K16055 - 2.4.1.15,3.1.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 560.0
YHH3_k127_2780600_1 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002667 546.0
YHH3_k127_2780600_10 YsiA-like protein, C-terminal region - - - 0.000000000000000000000000000275 122.0
YHH3_k127_2780600_11 COG0475 Kef-type K transport systems, membrane components - - - 0.0000000000000000002286 102.0
YHH3_k127_2780600_2 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 514.0
YHH3_k127_2780600_3 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005742 504.0
YHH3_k127_2780600_4 PFAM Transketolase K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001366 365.0
YHH3_k127_2780600_5 Transketolase, central region K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 365.0
YHH3_k127_2780600_6 transmembrane transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965 334.0
YHH3_k127_2780600_7 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000009792 214.0
YHH3_k127_2780600_8 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K09765 - 1.17.99.6 0.000000000000000000000000000000000000000000000003199 181.0
YHH3_k127_2780600_9 FR47-like protein K03789 - 2.3.1.128 0.00000000000000000000000000000000000000324 155.0
YHH3_k127_2781086_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004654,GO:0005488,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575 2.7.7.8 1.633e-254 805.0
YHH3_k127_2781086_1 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.000000000000000000000000000000000000103 146.0
YHH3_k127_2781086_2 acetyltransferase K18815 - 2.3.1.82 0.000000000000000000000000000000007261 131.0
YHH3_k127_2781086_3 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000004711 117.0
YHH3_k127_2781785_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897,K02182,K05939 - 2.3.1.40,6.2.1.20,6.2.1.3,6.2.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003649 369.0
YHH3_k127_2781785_1 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000001052 269.0
YHH3_k127_2781785_2 Subtilase family - - - 0.00002599 56.0
YHH3_k127_2794863_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.0000000000000000000000000000000000000000003854 162.0
YHH3_k127_2794863_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.0000000000000000000000000000000008825 143.0
YHH3_k127_2794863_2 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.00000000003732 66.0
YHH3_k127_2804039_0 NAD(P)-binding Rossmann-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 388.0
YHH3_k127_2804039_1 Dehydrogenase K00008 - 1.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003644 314.0
YHH3_k127_2804039_2 glycyl-radical enzyme activating protein family K04069 - 1.97.1.4 0.000000000000000000000000000000000002784 141.0
YHH3_k127_292697_0 NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00123,K00336 - 1.17.1.9,1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005064 271.0
YHH3_k127_292697_1 Thioredoxin K03671 - - 0.000000000000000000000000000000000002414 142.0
YHH3_k127_292697_2 Thioredoxin - - - 0.000000000000000003286 90.0
YHH3_k127_2930106_0 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000004506 216.0
YHH3_k127_2930106_1 Uncharacterised protein family UPF0047 - - - 0.0000000000000000000001397 97.0
YHH3_k127_29424_0 Belongs to the carbamoyltransferase HypF family K04656 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001171 389.0
YHH3_k127_29424_1 Hydrogenase formation hypA family K04654 - - 0.00000000000000000003204 91.0
YHH3_k127_29424_2 HupF/HypC family K04653 - - 0.0000000000000000003599 89.0
YHH3_k127_2943574_0 to orf3 of fosmid clone 4B7mr3 - - - 0.00000000000000000000000003724 119.0
YHH3_k127_2968059_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 1.235e-224 719.0
YHH3_k127_2968059_1 acyl-coa hydrolase K01073 - 3.1.2.20 0.00000000000000000000000002258 110.0
YHH3_k127_2968059_2 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000003321 59.0
YHH3_k127_3240241_0 Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 332.0
YHH3_k127_3240241_1 Uncharacterized protein family (UPF0051) K07033 - - 0.000000000000000000000000000000000000000000000000000001244 194.0
YHH3_k127_3255562_0 Alpha-amylase domain K05343 - 3.2.1.1,5.4.99.16 0.0 1354.0
YHH3_k127_3255562_1 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 0.0 1028.0
YHH3_k127_3255562_2 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 3.726e-301 936.0
YHH3_k127_3255562_3 Belongs to the glycosyl hydrolase 57 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002829 444.0
YHH3_k127_3255562_4 TrkA-C domain - - - 0.00000000000000000000000009944 115.0
YHH3_k127_3255562_5 cheY-homologous receiver domain - - - 0.0000000000000000006836 97.0
YHH3_k127_3255562_6 Belongs to the glycosyl hydrolase 57 family K22451 - 2.4.1.25 0.000000000000002436 89.0
YHH3_k127_3255562_7 Belongs to the glycosyl hydrolase 57 family - - - 0.0000000001253 74.0
YHH3_k127_3255562_8 HicB family - - - 0.00006935 45.0
YHH3_k127_3259614_0 Maf-like protein K06287 GO:0000278,GO:0000281,GO:0000910,GO:0000917,GO:0005575,GO:0005623,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022607,GO:0030428,GO:0032506,GO:0044085,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0090529,GO:1902410,GO:1903047 - 0.000000000000000000000000000000000000000000000000003881 187.0
YHH3_k127_3259614_1 Protein of unknown function (DUF3795) - - - 0.0000000000000000000000000000000000000000000000004924 181.0
YHH3_k127_3259614_2 FAD dependent oxidoreductase K07007 - - 0.00000000000000000000003926 100.0
YHH3_k127_3281068_0 ubiE/COQ5 methyltransferase family K00574,K07755 - 2.1.1.137,2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 342.0
YHH3_k127_3281068_1 SpoVT / AbrB like domain - - - 0.000000000000001444 77.0
YHH3_k127_3281068_2 Major Facilitator Superfamily - - - 0.0008041 47.0
YHH3_k127_3315094_0 PFAM 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001747 311.0
YHH3_k127_3315094_1 Benzoyl-CoA reductase 2-hydroxyglutaryl-CoA dehydratase subunit BcrC BadD HgdB - - - 0.000000000000000000000000000000000000000000000000000000001271 211.0
YHH3_k127_3344887_0 AcrB/AcrD/AcrF family K03296 - - 8.286e-220 717.0
YHH3_k127_3351307_0 Periplasmic Protein - - - 0.00000000000000000000000000000000000000000000000000006243 200.0
YHH3_k127_3351307_1 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000004301 166.0
YHH3_k127_3351307_2 - - - - 0.0000000000000000000000001406 116.0
YHH3_k127_3351307_3 - - - - 0.0000000000000000005815 97.0
YHH3_k127_3372770_0 Two component transcriptional regulator, winged helix family K07667,K07668 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001744 324.0
YHH3_k127_3372770_1 Histidine kinase K07652 - 2.7.13.3 0.000000000000000004582 85.0
YHH3_k127_33770_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001861 248.0
YHH3_k127_33770_1 Thioesterase superfamily - - - 0.000000000000000000000000000000000000000001082 161.0
YHH3_k127_3394879_0 transferase activity, transferring glycosyl groups K00754,K19422 GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.00000000000000000000000000000000000000000000001002 184.0
YHH3_k127_3459108_0 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 307.0
YHH3_k127_3459108_2 - - - - 0.000000000000000000000000000000000000000002684 167.0
YHH3_k127_3459108_3 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000006339 61.0
YHH3_k127_3459108_4 Site-specific DNA-methyltransferase (adenine-specific) K06223 - 2.1.1.72 0.00000397 49.0
YHH3_k127_369075_0 Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000001245 196.0
YHH3_k127_369075_1 methylmalonyl-CoA mutase C-terminal K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000006958 192.0
YHH3_k127_369075_2 PFAM Glyoxalase bleomycin resistance protein dioxygenase K01759,K05606 - 4.4.1.5,5.1.99.1 0.0000000000000000000000000000000000000000008026 166.0
YHH3_k127_369075_3 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000003466 142.0
YHH3_k127_3706760_0 COG0146 N-methylhydantoinase B acetone carboxylase, alpha subunit K01474,K10854 - 3.5.2.14,6.4.1.6 0.0000000000000000000000000000000000000000000002361 179.0
YHH3_k127_3706760_1 Acetone carboxylase gamma K10856 - 6.4.1.6 0.0000000000002196 71.0
YHH3_k127_3724276_0 PFAM ABC transporter related K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002192 273.0
YHH3_k127_3724276_1 Dihydroxyacetone kinase family - - - 0.000000000000000000000000000000000000000000000000003692 194.0
YHH3_k127_3776640_0 - - - - 0.00000000000000000000000000115 117.0
YHH3_k127_3776640_1 - - - - 0.0000000004693 61.0
YHH3_k127_3776640_2 - - - - 0.000047 50.0
YHH3_k127_3789078_0 PFAM AMP-dependent synthetase and ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000707 432.0
YHH3_k127_3789078_1 HIT domain K19710 - 2.7.7.53 0.000000000000000000000000000000000000000000000000000000002738 205.0
YHH3_k127_3789078_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000009193 151.0
YHH3_k127_3789078_3 CO dehydrogenase/acetyl-CoA synthase complex beta subunit - - - 0.0000000000000000000000002129 115.0
YHH3_k127_3791013_0 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009663 556.0
YHH3_k127_3791013_1 SMART phosphoesterase PHP domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000004547 226.0
YHH3_k127_3791013_2 Probable zinc-ribbon domain - - - 0.000000000000000000000000000000000000006997 148.0
YHH3_k127_3791013_3 Belongs to the universal stress protein A family - - - 0.000000000000000006617 93.0
YHH3_k127_3791013_4 PFAM RNP-1 like RNA-binding protein - - - 0.0000000001388 65.0
YHH3_k127_38046_0 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 473.0
YHH3_k127_38046_1 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000000000000000000009584 213.0
YHH3_k127_38046_2 PFAM Flavin reductase like domain - - - 0.0000000000171 71.0
YHH3_k127_3820800_0 Metalloenzyme superfamily K15635 - 5.4.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004602 467.0
YHH3_k127_3820800_1 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005146 313.0
YHH3_k127_3820800_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002521 304.0
YHH3_k127_3820800_3 Peptidase MA superfamily - - - 0.000000000000419 75.0
YHH3_k127_3820800_4 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.00000000007268 62.0
YHH3_k127_3874341_0 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides - - - 0.0000000000000000000000000000000000004632 152.0
YHH3_k127_3874341_1 KR domain - - - 0.000000000000000000000000000000000003223 139.0
YHH3_k127_3874341_2 C terminal of Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000009057 141.0
YHH3_k127_3924181_0 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003831 293.0
YHH3_k127_3924181_1 Universal stress protein family - - - 0.000000000002787 71.0
YHH3_k127_4000596_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 335.0
YHH3_k127_4000596_1 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000000000000000000000001569 226.0
YHH3_k127_4156053_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 2.58e-236 740.0
YHH3_k127_4156053_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 465.0
YHH3_k127_4156053_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 364.0
YHH3_k127_4156053_3 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000000000008607 259.0
YHH3_k127_4156053_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000023 106.0
YHH3_k127_4170504_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007924 372.0
YHH3_k127_4170504_1 PFAM Alcohol dehydrogenase zinc-binding domain protein K00001,K00008 - 1.1.1.1,1.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000001471 249.0
YHH3_k127_4176586_0 Peptidase family M48 K03799 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002082 413.0
YHH3_k127_4176586_1 LemA family K03744 - - 0.0000005732 51.0
YHH3_k127_4183007_0 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000002742 143.0
YHH3_k127_4183007_1 PBS lyase K22221 - - 0.0000000000000000000000000002905 120.0
YHH3_k127_4187591_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000001267 147.0
YHH3_k127_4187591_1 Protein of unknown function (DUF3344) - - - 0.00000000000000002307 91.0
YHH3_k127_4201039_0 cation diffusion facilitator family transporter K16264 GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003184 277.0
YHH3_k127_4236181_0 Flavin containing amine oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002098 268.0
YHH3_k127_4240875_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 406.0
YHH3_k127_4240875_1 histidine kinase A domain protein - - - 0.0000002889 54.0
YHH3_k127_4309993_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005189 405.0
YHH3_k127_4309993_1 PAC2 family K07159 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001411 275.0
YHH3_k127_4309993_2 PAC2 family - - - 0.0000000000000000000000000000000000000003738 157.0
YHH3_k127_4335496_0 Prismane/CO dehydrogenase family K00198 - 1.2.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 394.0
YHH3_k127_4335496_2 PFAM DegV family protein - - - 0.000000000000000000000000000000000000000000000000000008875 196.0
YHH3_k127_4343279_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000007749 156.0
YHH3_k127_4343279_1 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000028 87.0
YHH3_k127_4363725_0 Protein of unknown function (DUF3795) - - - 0.000000000000000000000000000000000000000004134 161.0
YHH3_k127_4363725_2 Short C-terminal domain - - - 0.00000000000002793 78.0
YHH3_k127_4363725_3 CoA-transferase family III - - - 0.0000000000000936 75.0
YHH3_k127_4363725_4 - - - - 0.0000004965 54.0
YHH3_k127_4385182_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004475 565.0
YHH3_k127_4385182_1 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000768 397.0
YHH3_k127_4385182_2 YmdB-like protein K09769 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003095 328.0
YHH3_k127_4385182_3 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 303.0
YHH3_k127_4385182_4 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000002244 160.0
YHH3_k127_4385182_5 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000002398 86.0
YHH3_k127_4385182_6 Type IV pilus biogenesis stability protein PilW - - - 0.0000000000000002401 80.0
YHH3_k127_4412657_0 Pyridine nucleotide-disulphide oxidoreductase - - - 6.411e-223 708.0
YHH3_k127_4412657_1 metal-dependent phosphohydrolase HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000005426 231.0
YHH3_k127_4412657_2 Short-chain dehydrogenase reductase SDR K07535 - - 0.000000000000000000000000000000000001187 149.0
YHH3_k127_4440061_0 transferase activity, transferring glycosyl groups K02844 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0008653,GO:0008919,GO:0009058,GO:0009059,GO:0009103,GO:0009244,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0046401,GO:0046527,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002588 475.0
YHH3_k127_4440061_1 cation diffusion facilitator family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 428.0
YHH3_k127_4440061_2 RNase_H superfamily K07502 - - 0.000000000000000000000000000000000000000000000000000003364 196.0
YHH3_k127_4440061_3 Alpha beta hydrolase - - - 0.0000000000000000000000000000000000000002907 160.0
YHH3_k127_4613866_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008522 519.0
YHH3_k127_4613866_1 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000009592 225.0
YHH3_k127_4613866_2 Histidinol dehydrogenase K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 0.0000000000000000000000000000000000000000000000000000000131 215.0
YHH3_k127_4613866_3 Chromatin associated protein KTI12 - - - 0.0000000000000000000000000000000004518 139.0
YHH3_k127_4620639_0 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000000002715 230.0
YHH3_k127_4620639_1 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000001043 228.0
YHH3_k127_4620639_2 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000004038 218.0
YHH3_k127_4620639_3 4Fe-4S dicluster domain - - - 0.00000000000000000000003588 114.0
YHH3_k127_4620639_4 Molybdopterin oxidoreductase Fe4S4 domain - - - 0.000000001171 66.0
YHH3_k127_4668343_0 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III C terminal K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008655 383.0
YHH3_k127_4668343_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 377.0
YHH3_k127_4668343_2 PFAM thioesterase superfamily - - - 0.0000000000000000001864 94.0
YHH3_k127_4668343_3 Dehydrogenase - - - 0.000000000000000001559 88.0
YHH3_k127_4668343_4 CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.0000000000004999 78.0
YHH3_k127_467323_0 Pyruvate formate lyase-like K00656,K20038 - 2.3.1.54,4.3.99.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006348 466.0
YHH3_k127_4684886_0 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00076 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008709,GO:0009056,GO:0009987,GO:0016043,GO:0016054,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022607,GO:0030573,GO:0032787,GO:0033764,GO:0042802,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072329,GO:1901360,GO:1901575,GO:1901615 1.1.1.159 0.000000000000000000000001568 104.0
YHH3_k127_4690267_0 ATPase associated with various cellular activities, AAA_5 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 390.0
YHH3_k127_4690267_1 Dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000004548 234.0
YHH3_k127_4690267_2 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000002689 182.0
YHH3_k127_4690267_3 VWA containing CoxE family protein K09989 - - 0.00000000000000000000000000000000000000002274 156.0
YHH3_k127_4690267_4 MaoC like domain - - - 0.0000000000000000000000000000000002115 136.0
YHH3_k127_4690267_5 FtsZ-dependent cytokinesis - - - 0.000000000000000000001741 104.0
YHH3_k127_4690267_6 N-terminal half of MaoC dehydratase - - - 0.00001784 57.0
YHH3_k127_4706495_0 carbon-monoxide dehydrogenase (ferredoxin) activity K00192,K02572,K02573,K14138 - 1.2.7.4,2.3.1.169 0.0 1034.0
YHH3_k127_4706495_1 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K00193,K14138 - 2.3.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003331 522.0
YHH3_k127_4706495_2 Pterin binding enzyme K15023 - 2.1.1.258 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 348.0
YHH3_k127_4706495_3 CO dehydrogenase acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 310.0
YHH3_k127_4706495_4 epimerase - - - 0.00000000000000000000000000000000000000000000000000000001233 207.0
YHH3_k127_4706495_5 PFAM CO dehydrogenase beta subunit acetyl-CoA synthase epsilon subunit K00195,K03800 - 6.3.1.20 0.000000000000000000000000000000000000000000000000001824 188.0
YHH3_k127_4706495_6 CO dehydrogenase acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.000000000000000000000000000000000000001034 149.0
YHH3_k127_4725130_0 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 5.46e-208 651.0
YHH3_k127_4725130_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001406 309.0
YHH3_k127_4725130_2 Participates in transcription elongation, termination and antitermination K02601 - - 0.000000000000000000000000000000000000000000000000000000000000000001632 233.0
YHH3_k127_4725130_3 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000001263 211.0
YHH3_k127_4725130_4 PFAM inositol monophosphatase K01092 - 3.1.3.25 0.0000000000000000000000000000000000000000000002113 177.0
YHH3_k127_4725130_5 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000002698 82.0
YHH3_k127_4725130_6 3-Oxoacyl- acyl-carrier-protein (ACP) synthase III C terminal K01641 - 2.3.3.10 0.000000000000001426 78.0
YHH3_k127_4725130_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.0000000000252 67.0
YHH3_k127_4751889_0 Domain of unknown function (DUF4389) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000008648 291.0
YHH3_k127_4751889_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002301 250.0
YHH3_k127_4751889_10 Two component transcriptional regulator, LuxR family K07689 - - 0.0000000003799 67.0
YHH3_k127_4751889_11 Isoprenylcysteine carboxyl methyltransferase (ICMT) family - - - 0.00000002236 61.0
YHH3_k127_4751889_12 - - - - 0.00000002969 55.0
YHH3_k127_4751889_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000005997 255.0
YHH3_k127_4751889_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000003988 214.0
YHH3_k127_4751889_5 glyoxalase III activity - - - 0.00000000000000000000000000000000000000001772 165.0
YHH3_k127_4751889_6 Flavodoxin - - - 0.0000000000000000000000000000000000001082 148.0
YHH3_k127_4751889_8 Flavodoxin - - - 0.00000000000000000000000001384 117.0
YHH3_k127_4751889_9 response regulator - - - 0.000000000005082 74.0
YHH3_k127_4781734_0 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005558 394.0
YHH3_k127_4781734_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000776 226.0
YHH3_k127_4781734_2 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.0000000000000000004393 93.0
YHH3_k127_4808943_0 FMN binding - - - 0.00000000000000000000000001143 116.0
YHH3_k127_4906317_0 Insulinase (Peptidase family M16) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007528 253.0
YHH3_k127_4906317_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000002142 59.0
YHH3_k127_494962_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 456.0
YHH3_k127_494962_1 amine oxidase - - - 0.000000000000000000000000000000008353 136.0
YHH3_k127_4987378_0 NADH ubiquinone oxidoreductase, NADH-binding K00124,K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000002474 221.0
YHH3_k127_5049994_0 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.00000000000000000000000000000000000000000000000000000000000000000000002327 253.0
YHH3_k127_5049994_1 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.00000000000000000000000000000000000000000000009995 174.0
YHH3_k127_505209_0 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 389.0
YHH3_k127_505209_1 carnitine dehydratase - - - 0.000000000000000000000000000000002099 134.0
YHH3_k127_505209_2 PFAM glycosyl transferase family 2 K14597 - - 0.000000000001011 74.0
YHH3_k127_5079257_0 Nucleotidyl transferase K00963 - 2.7.7.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003349 312.0
YHH3_k127_5079257_1 Alpha/beta hydrolase family K06889,K07397 - - 0.00000000000000000000000000000000000000000000000000000008724 203.0
YHH3_k127_5095112_0 PFAM GAF domain protein - - - 0.000000000000000000000000000000000000000002249 165.0
YHH3_k127_5095112_1 PFAM Antibiotic biosynthesis monooxygenase - - - 0.00000000000002736 74.0
YHH3_k127_5095112_2 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000982 72.0
YHH3_k127_51127_0 membrane - - - 0.0000000000000000000000000000000000001527 161.0
YHH3_k127_5114097_0 helix_turn_helix, cAMP Regulatory protein K21564 - - 0.000000000000000000000000000000000000000000000000000000000000000006996 229.0
YHH3_k127_5114097_1 amine oxidase - - - 0.000001469 53.0
YHH3_k127_511472_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000002918 265.0
YHH3_k127_511472_1 SMART Elongator protein 3 MiaB NifB K18707 - 2.8.4.5 0.00000000000000000000000000000000008208 137.0
YHH3_k127_511472_2 - - - - 0.00000000000000000000000007575 110.0
YHH3_k127_5139661_0 Rubredoxin-like zinc ribbon domain (DUF35_N) - - - 0.0000000000000000000000000000000000000000000000000000000000000306 218.0
YHH3_k127_5140043_0 Prephenate dehydratase K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003235 308.0
YHH3_k127_5140043_1 Methionine biosynthesis protein MetW - - - 0.00000000001228 74.0
YHH3_k127_5140043_2 O-methyltransferase activity - - - 0.000002124 57.0
YHH3_k127_5144600_0 protein histidine kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004991 312.0
YHH3_k127_5156397_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 417.0
YHH3_k127_5156397_1 Fe-S oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007992 384.0
YHH3_k127_5156397_2 HD domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000008845 246.0
YHH3_k127_5156397_3 KR domain K07124 - - 0.0000000000000000000000000000000000000000000000000000000006771 211.0
YHH3_k127_5156397_4 Superinfection immunity protein - - - 0.00000004911 59.0
YHH3_k127_5211673_0 Belongs to the ClpA ClpB family K03694,K03695 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006082 511.0
YHH3_k127_5211673_1 Glutaredoxin K03676,K04771 - 3.4.21.107 0.00000000000000003088 83.0
YHH3_k127_5212588_0 Cache_2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002463 339.0
YHH3_k127_5270747_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 2.378e-257 803.0
YHH3_k127_5270747_1 Fungal trichothecene efflux pump (TRI12) - GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 527.0
YHH3_k127_5270747_10 PFAM Archease protein family (DUF101 UPF0211) - - - 0.000000000000000000000000000001427 124.0
YHH3_k127_5270747_11 GlcNAc-PI de-N-acetylase K22408 - - 0.000000000000000001609 95.0
YHH3_k127_5270747_12 Evidence 4 Homologs of previously reported genes of - - - 0.000000000000000008964 86.0
YHH3_k127_5270747_2 Phosphoribosylglycinamide synthetase, C domain K01945 - 6.3.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301 479.0
YHH3_k127_5270747_3 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 342.0
YHH3_k127_5270747_4 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409,K03070 GO:0000287,GO:0000408,GO:0002949,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140030,GO:0140032,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 346.0
YHH3_k127_5270747_5 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 - 2.7.7.87 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001709 346.0
YHH3_k127_5270747_6 TIGRFAM geranylgeranyl reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001631 256.0
YHH3_k127_5270747_7 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.00000000000000000000000000000000000000000000000000001307 192.0
YHH3_k127_5270747_8 Glycoprotease family K01409,K14742 GO:0002949,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0019538,GO:0034470,GO:0034641,GO:0034660,GO:0042802,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070011,GO:0070525,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564 2.3.1.234 0.00000000000000000000000000000000000000000487 163.0
YHH3_k127_5270747_9 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.00000000000000000000000000000001679 134.0
YHH3_k127_5279695_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000001511 192.0
YHH3_k127_5332512_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 366.0
YHH3_k127_5332512_1 Belongs to the UPF0219 family K01641 - 2.3.3.10 0.00000000000000000000000000000000000000000000124 179.0
YHH3_k127_5332512_2 PFAM Acyl-CoA dehydrogenase - - - 0.000000000000000000000000000000007099 132.0
YHH3_k127_5332512_3 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.0000000000000000003168 92.0
YHH3_k127_534149_0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000248 294.0
YHH3_k127_534149_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03605 - - 0.000000000000000000000000000000000000000000000000000000006631 204.0
YHH3_k127_534149_2 Dinitrogenase iron-molybdenum cofactor - - - 0.000000000000000000000000000000000157 135.0
YHH3_k127_534149_3 Iron-sulfur cluster assembly protein - - - 0.00000000000002565 77.0
YHH3_k127_534149_4 Regulatory protein, FmdB family - - - 0.00000003108 58.0
YHH3_k127_5343918_0 4Fe-4S single cluster domain K01843 - 5.4.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002255 530.0
YHH3_k127_5343918_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000001479 180.0
YHH3_k127_5374855_0 diaminopimelate decarboxylase activity K01581 - 4.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 341.0
YHH3_k127_5374855_1 spermidine synthase activity K00797 GO:0003674,GO:0003824,GO:0004766,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004022 295.0
YHH3_k127_5374855_2 PFAM Pyruvate kinase, alpha beta domain K09126 - - 0.000000000000000000000000000000000000000000000000000006505 194.0
YHH3_k127_5374855_3 Protein of unknown function (DUF503) K09764 - - 0.000000000000000001722 90.0
YHH3_k127_5374855_4 Alpha/beta hydrolase family K06889,K07397 - - 0.00000108 53.0
YHH3_k127_5392432_0 Flavin containing amine oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009712 287.0
YHH3_k127_5428243_0 Metallopeptidase family M24 K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003176 314.0
YHH3_k127_5428243_1 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000029 190.0
YHH3_k127_5428243_2 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000000000000000000000000000000000008499 175.0
YHH3_k127_5428243_3 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.000000000000000000000000000000206 124.0
YHH3_k127_5428243_4 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000001708 121.0
YHH3_k127_5428243_5 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000001151 68.0
YHH3_k127_5430822_0 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003341 269.0
YHH3_k127_5430822_1 molybdopterin-guanine dinucleotide biosynthesis protein K03753 - - 0.000000000000000000000000000000000000000000000008329 176.0
YHH3_k127_5430822_2 ATP-dependent peptidase activity K01338 - 3.4.21.53 0.00000000000000000000000000000000006478 139.0
YHH3_k127_5430822_3 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000002443 102.0
YHH3_k127_552703_0 Hydantoinase/oxoprolinase N-terminal region K10855 GO:0003674,GO:0003824,GO:0006091,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016885,GO:0017144,GO:0018710,GO:0042180,GO:0043443,GO:0044237,GO:0044281,GO:0071704,GO:1901568,GO:1902224 6.4.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 370.0
YHH3_k127_552703_1 PFAM Integrase core domain - - - 0.0000000000000003226 90.0
YHH3_k127_5570013_0 Domain of unknown function (DUF362) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 390.0
YHH3_k127_5570013_1 metallopeptidase activity - - - 0.000000000000000000000000000486 126.0
YHH3_k127_5570065_0 glutamine synthetase K01915 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0044464,GO:0050001,GO:0071944 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001 283.0
YHH3_k127_5570065_1 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000007544 184.0
YHH3_k127_5580275_0 CoA-transferase family III - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001422 263.0
YHH3_k127_5580275_1 CoA-transferase family III K07544 - 2.8.3.15 0.00000000000000000000000000000000000000000000000000001168 198.0
YHH3_k127_5580275_2 - - - - 0.00000000004804 68.0
YHH3_k127_5580275_3 SMART phosphoesterase PHP domain protein - - - 0.0000000619 61.0
YHH3_k127_5588603_0 - - - - 0.00000000000000000009002 95.0
YHH3_k127_5588603_1 - - - - 0.000000002466 61.0
YHH3_k127_5594747_0 GCN5 family acetyltransferase K22477 - 2.3.1.1 0.000000000000000000000006867 106.0
YHH3_k127_5597325_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K08352 - 1.8.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 539.0
YHH3_k127_5597325_1 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001557 269.0
YHH3_k127_5597325_2 aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000001369 259.0
YHH3_k127_5597325_3 Dodecin K09165 - - 0.0000000000000000000001569 98.0
YHH3_k127_5597325_4 - - - - 0.000000000000057 74.0
YHH3_k127_5602390_0 R3H domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008309 617.0
YHH3_k127_5602390_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000005449 195.0
YHH3_k127_5602390_2 - - - - 0.0000006388 61.0
YHH3_k127_5624231_0 cellulose binding - - - 0.000000000000000000000000000000000000000000005987 184.0
YHH3_k127_5624231_1 IPT/TIG domain - - - 0.000000000000002111 90.0
YHH3_k127_5630535_0 CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009356 437.0
YHH3_k127_5630535_1 PFAM glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000003829 196.0
YHH3_k127_5639109_0 alcohol dehydrogenase K00008,K05351 - 1.1.1.14,1.1.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 483.0
YHH3_k127_5639109_1 Enoyl-(Acyl carrier protein) reductase K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000002738 258.0
YHH3_k127_5639109_2 isomerase activity K01805 - 5.3.1.5 0.00000000000000000000000000006206 123.0
YHH3_k127_5639109_3 FGGY family of carbohydrate kinases, C-terminal domain K00854 GO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704 2.7.1.17 0.00000000000000001362 88.0
YHH3_k127_5656671_0 Domain of unknown function (DUF362) K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008958 268.0
YHH3_k127_5656671_1 Uncharacterised protein, DegV family COG1307 - - - 0.00000000000000000000000000002506 125.0
YHH3_k127_5656671_2 Belongs to the LarC family K09121 - 4.99.1.12 0.000000000955 61.0
YHH3_k127_5673659_0 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 483.0
YHH3_k127_5673659_1 Homoserine dehydrogenase K00003 - 1.1.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005615 442.0
YHH3_k127_5673659_2 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001798 448.0
YHH3_k127_5673659_3 GTP cyclohydrolase I activity K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000003281 260.0
YHH3_k127_5673659_4 - - - - 0.00000000000000000000000000000000000000005323 158.0
YHH3_k127_5673659_5 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.0000000000000000000000000000001428 126.0
YHH3_k127_5692157_0 Acyl-CoA dehydrogenase type 2 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 340.0
YHH3_k127_5692157_1 Domain of unknown function DUF83 - - - 0.00000000000000000000000000000002421 134.0
YHH3_k127_5699108_0 'glutamate synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001204 423.0
YHH3_k127_5699108_1 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003694 385.0
YHH3_k127_5699108_2 Methylene-tetrahydrofolate reductase C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007986 248.0
YHH3_k127_5699108_3 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000277 215.0
YHH3_k127_5699108_4 Histidine kinase-like ATPases - - - 0.0000000000000007306 80.0
YHH3_k127_5700564_0 Methylene-tetrahydrofolate reductase C terminal K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002357 600.0
YHH3_k127_5700564_1 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000006644 264.0
YHH3_k127_5700564_2 Probable zinc-ribbon domain - - - 0.00000000000000000000000000000000000000006363 153.0
YHH3_k127_5710850_0 Leucine carboxyl methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000001391 238.0
YHH3_k127_5710850_1 arylsulfatase activity - - - 0.000000000003744 74.0
YHH3_k127_5712076_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000004267 255.0
YHH3_k127_5712076_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0000000000000000000000000000000000000000000000000000000000000005251 224.0
YHH3_k127_5745497_0 Succinyl-CoA 3-ketoacid-CoA transferase K01028 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000003878 237.0
YHH3_k127_5745497_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000008864 214.0
YHH3_k127_5766092_0 DNA alkylation repair enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006175 262.0
YHH3_k127_5766092_1 AraC-like ligand binding domain - - - 0.0000000000000000000000001369 107.0
YHH3_k127_582142_0 ABC-2 type transporter K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 333.0
YHH3_k127_582142_1 Transport permease protein K01992 - - 0.000000000000000000000000000000000003454 141.0
YHH3_k127_5836290_0 DNA-directed DNA polymerase K02337 - 2.7.7.7 0.0 1039.0
YHH3_k127_5836290_1 ATPase P K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000001737 223.0
YHH3_k127_5836290_2 BioD-like N-terminal domain of phosphotransacetylase K06873 - - 0.0000000000000000000000000000000000000000000000000008998 198.0
YHH3_k127_5952637_0 3-oxoacyl-[acyl-carrier-protein] synthase activity K00646,K00647,K09458 - 2.3.1.179,2.3.1.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001176 364.0
YHH3_k127_5952637_1 MarC family integral membrane protein K05595 - - 0.00000000000000000000000000000000000000000000000000000000000000000001445 242.0
YHH3_k127_5952637_2 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) - - - 0.00000000000000000000000000000000000000000000000000000000001232 214.0
YHH3_k127_5952637_3 Domain of unknown function (DUF4416) - - - 0.00000000000000000000000000000000000000000000002545 177.0
YHH3_k127_6002621_0 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000000000000000000000001083 113.0
YHH3_k127_6002621_1 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.000000000000000000005073 101.0
YHH3_k127_6002621_2 PFAM Class I peptide chain release factor K15034 - - 0.000000000000000008308 87.0
YHH3_k127_6015491_0 electron transfer flavoprotein K03521 - - 0.0000000000000000000000000000000000000000000000000000000000000004848 231.0
YHH3_k127_6015491_1 FAD linked oxidase domain protein - - - 0.0000000000000000000000000000000000000000000000000001632 193.0
YHH3_k127_6015491_2 Cysteine-rich domain - - - 0.00000000000008934 74.0
YHH3_k127_6037978_0 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K20038 - 2.3.1.54,4.3.99.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005348 419.0
YHH3_k127_6037978_1 PFAM ferredoxin - - - 0.0000001568 54.0
YHH3_k127_604397_0 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005359 301.0
YHH3_k127_604397_1 Plays a role in the regulation of phosphate uptake K02039 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002665 255.0
YHH3_k127_604397_2 Protein of unknown function DUF47 K07220 - - 0.0000000000004961 68.0
YHH3_k127_6064212_0 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000003737 233.0
YHH3_k127_6064212_1 PFAM ATPase BadF BadG BcrA BcrD type - - - 0.0000000000000000000000000000000004264 138.0
YHH3_k127_6078247_0 ferredoxin oxidoreductase, alpha subunit K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002743 421.0
YHH3_k127_6078247_1 ADP-ribosylglycohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002405 338.0
YHH3_k127_6078247_2 4Fe-4S dicluster domain K00176 - 1.2.7.3 0.0000000000000000261 89.0
YHH3_k127_6080645_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 2.01e-199 631.0
YHH3_k127_6080645_1 AIR synthase related protein, C-terminal domain K01933 - 6.3.3.1 0.0000000000000000000000000000000000000000000000000000000000001852 215.0
YHH3_k127_6080645_2 Enoyl-CoA hydratase/isomerase - - - 0.00000000000000000000000000000000000000000000000000000000006812 214.0
YHH3_k127_6081068_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 2.354e-215 682.0
YHH3_k127_6081068_1 Protein of unknown function (DUF1385) K09153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008438 305.0
YHH3_k127_6081068_2 Belongs to the FPP GGPP synthase family K13787 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008264 301.0
YHH3_k127_6081068_3 TIGRFAM phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 288.0
YHH3_k127_6081068_4 Phosphoribosyl-AMP cyclohydrolase K01496,K11755 - 3.5.4.19,3.6.1.31 0.00000000000000000000000000000000000000000005726 162.0
YHH3_k127_6081068_5 PFAM Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000004579 145.0
YHH3_k127_6098476_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K00058,K11216 - 1.1.1.399,1.1.1.95,2.7.1.189 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002349 337.0
YHH3_k127_6098476_1 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 310.0
YHH3_k127_6098476_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005013 273.0
YHH3_k127_6098476_3 4-phosphoerythronate dehydrogenase activity K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000002158 232.0
YHH3_k127_6098476_4 L-ribulose-5-phosphate 4-epimerase K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000000003344 200.0
YHH3_k127_6098476_5 Domain of unknown function (DUF296) - - - 0.00000000000000000000005896 98.0
YHH3_k127_6172215_0 DNA-binding protein - - - 0.0000000000000004844 79.0
YHH3_k127_6172215_1 - - - - 0.0001954 53.0
YHH3_k127_6172215_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0005913 44.0
YHH3_k127_6179139_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 2.696e-259 811.0
YHH3_k127_6179139_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.000000000000007407 76.0
YHH3_k127_6189902_0 Domain of unknown function (DUF4389) - - - 0.0000000000000000000000000000001087 132.0
YHH3_k127_6189902_1 Carboxylesterase family K03929 - - 0.00000000000000000000000000003805 126.0
YHH3_k127_6189902_2 COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - - - 0.000000000000000000000000008245 115.0
YHH3_k127_6189902_3 ABC transporter K01990 - - 0.000000000000000000000003112 105.0
YHH3_k127_6189902_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000007223 80.0
YHH3_k127_6200962_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 433.0
YHH3_k127_6200962_1 PFAM Appr-1-p processing - - - 0.0000000000000000000000000000000000000000000000000000000000001428 218.0
YHH3_k127_6200962_2 Histone deacetylase domain - - - 0.00000000000000000000000000000000000000000000000000000000000317 219.0
YHH3_k127_6200962_3 - - - - 0.000000003866 66.0
YHH3_k127_6200962_4 SMART Elongator protein 3 MiaB NifB - - - 0.00000001552 59.0
YHH3_k127_6200962_5 Family of unknown function (DUF5343) - - - 0.000004491 55.0
YHH3_k127_6211665_0 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K09121 - 4.99.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000246 340.0
YHH3_k127_6211665_1 PFAM 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 - - 0.00000000000000000000000000000000000000000000000000007141 188.0
YHH3_k127_6227051_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000229 467.0
YHH3_k127_6227051_1 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007243 423.0
YHH3_k127_6227051_10 Domain in cystathionine beta-synthase and other proteins. K04767 - - 0.00000000000000000000000000000000000000000000000000000000002071 213.0
YHH3_k127_6227051_11 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000000000000000000000000000000008102 203.0
YHH3_k127_6227051_12 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000001303 140.0
YHH3_k127_6227051_13 Uncharacterized ACR, COG1399 K07040 - - 0.0000000000000000000000000000000121 133.0
YHH3_k127_6227051_14 Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family K00655 - 2.3.1.51 0.0000000000000000000000000000006054 131.0
YHH3_k127_6227051_15 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000007925 108.0
YHH3_k127_6227051_16 lactoylglutathione lyase activity K05606 - 5.1.99.1 0.00000000000000000000004905 107.0
YHH3_k127_6227051_17 structural constituent of ribosome K02911 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000002135 74.0
YHH3_k127_6227051_18 Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000003173 72.0
YHH3_k127_6227051_19 - - - - 0.000000000004557 69.0
YHH3_k127_6227051_2 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 379.0
YHH3_k127_6227051_3 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 361.0
YHH3_k127_6227051_4 PFAM ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 348.0
YHH3_k127_6227051_5 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003683 317.0
YHH3_k127_6227051_6 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 291.0
YHH3_k127_6227051_7 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 289.0
YHH3_k127_6227051_8 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000005074 263.0
YHH3_k127_6227051_9 Belongs to the enoyl-CoA hydratase isomerase family - - - 0.00000000000000000000000000000000000000000000000000000000000000007134 231.0
YHH3_k127_6284922_0 FAD dependent oxidoreductase - - - 0.000000000000000000000000000000001461 148.0
YHH3_k127_6284922_1 oxidoreductase - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0009065 44.0
YHH3_k127_6330537_0 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002272 272.0
YHH3_k127_6330537_1 TIGRFAM outer membrane autotransporter barrel domain protein - - - 0.00000000005114 75.0
YHH3_k127_6349809_0 Memo-like protein K06990 - - 0.000000000000000000000000000000000000000000000000000000000227 211.0
YHH3_k127_6349809_1 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000009756 84.0
YHH3_k127_6349809_2 Possible lysine decarboxylase K06966 - 3.2.2.10 0.00000000000000002475 83.0
YHH3_k127_6349809_3 involved in cell wall biogenesis K00721 - 2.4.1.83 0.0000000000000005321 84.0
YHH3_k127_6350616_0 TIGRFAM cysteine K12339 - 2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000009884 256.0
YHH3_k127_6350616_1 Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. - - - 0.0000001994 57.0
YHH3_k127_6353615_0 magnesium chelatase K03405 - 6.6.1.1 0.000000000000000000000000000000000007613 154.0
YHH3_k127_6353615_1 PFAM Cobyrinic acid a,c-diamide synthase K07321 - - 0.00000000000001423 75.0
YHH3_k127_6361930_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001463 275.0
YHH3_k127_6361930_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000000000000003416 227.0
YHH3_k127_6361930_2 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.00000000000000000000000000000000000000000000000000000000000008657 214.0
YHH3_k127_636864_0 CoA-transferase family III - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009635 428.0
YHH3_k127_6379144_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 554.0
YHH3_k127_6408518_0 metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 346.0
YHH3_k127_6466124_0 Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 311.0
YHH3_k127_6466124_1 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.0000000000000000000000000000000000000158 156.0
YHH3_k127_6474278_0 Aldehyde ferredoxin oxidoreductase K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005305 393.0
YHH3_k127_6476496_0 regulation of RNA biosynthetic process - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001572 266.0
YHH3_k127_6476496_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.000000000000000000000000000000000000000000003186 171.0
YHH3_k127_6476496_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000000000000000000000000000000001238 153.0
YHH3_k127_6476496_3 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.000000001871 59.0
YHH3_k127_6477064_0 BadF BadG BcrA BcrD - - - 0.0000000000000000000000000000000000000000000000000000006841 198.0
YHH3_k127_6477064_1 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000005678 128.0
YHH3_k127_6477064_2 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.00001815 49.0
YHH3_k127_6480214_0 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000005748 244.0
YHH3_k127_6480214_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000002332 186.0
YHH3_k127_6486118_0 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 375.0
YHH3_k127_6486118_1 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008255 363.0
YHH3_k127_6486118_2 DUF35 OB-fold domain, acyl-CoA-associated K01641 - 2.3.3.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001347 332.0
YHH3_k127_6486118_3 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001019 277.0
YHH3_k127_6486118_4 acyl-CoA dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000025 250.0
YHH3_k127_6495444_0 molybdopterin cofactor binding K00183 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006277 252.0
YHH3_k127_6502807_0 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004014 239.0
YHH3_k127_6528070_0 Nucleotidyl transferase K00966 - 2.7.7.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 353.0
YHH3_k127_6528070_1 Uncharacterised protein, DegV family COG1307 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 287.0
YHH3_k127_6528070_2 PFAM inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000002368 179.0
YHH3_k127_6528070_3 Belongs to the phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000006948 150.0
YHH3_k127_6529648_0 beta-keto acid cleavage enzyme K18013 - 2.3.1.247 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001656 363.0
YHH3_k127_6529648_1 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001446 267.0
YHH3_k127_6529648_2 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000001971 129.0
YHH3_k127_6529648_3 - - - - 0.00000000000000002618 90.0
YHH3_k127_6549927_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 1.376e-228 721.0
YHH3_k127_6549927_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 447.0
YHH3_k127_6549927_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.0001959 44.0
YHH3_k127_6557479_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000004017 118.0
YHH3_k127_6557479_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000001289 123.0
YHH3_k127_6557479_2 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.00000000000000000000000001377 111.0
YHH3_k127_6561430_0 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 2.289e-228 726.0
YHH3_k127_6561430_1 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.000000000000000000000000000000000000000000000000009426 195.0
YHH3_k127_6561430_2 Dolichol kinase - - - 0.0000000000004039 78.0
YHH3_k127_6572257_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.144e-230 722.0
YHH3_k127_6572257_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.909e-230 719.0
YHH3_k127_6572257_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006124 364.0
YHH3_k127_6572257_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109,K02113 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0030312,GO:0040007,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000002697 149.0
YHH3_k127_6572257_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000004967 145.0
YHH3_k127_6589311_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005955 331.0
YHH3_k127_6589311_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000001113 76.0
YHH3_k127_6589417_0 arylsulfatase activity - - - 0.000000000000000000000000004171 114.0
YHH3_k127_6641323_0 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 439.0
YHH3_k127_6641323_1 gas vesicle protein - - - 0.00000000005244 69.0
YHH3_k127_6666564_0 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000007178 219.0
YHH3_k127_6666564_1 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K20038 - 2.3.1.54,4.3.99.4 0.0000000000000000000000000000000000000000000000000006176 188.0
YHH3_k127_6692686_0 CoA binding domain - - - 0.0000000000000000000000000000000000000000001384 170.0
YHH3_k127_6717782_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 4.65e-227 712.0
YHH3_k127_6717782_1 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001482 315.0
YHH3_k127_6717782_2 Belongs to the FPP GGPP synthase family K00805,K02523 - 2.5.1.30,2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000006416 245.0
YHH3_k127_6717782_3 MoaE protein K03635,K21142 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657 2.8.1.12 0.0000000000000000000000446 103.0
YHH3_k127_6769423_0 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 - 1.1.1.85 0.00000000000000000000000000000000000000000000000008162 180.0
YHH3_k127_6769423_1 Conserved hypothetical protein 95 - - - 0.0000000000000000000000000000000000000000000003438 173.0
YHH3_k127_6769423_2 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 GO:0003674,GO:0003824,GO:0004595,GO:0005488,GO:0005515,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0015939,GO:0015940,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0042802,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046390,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.7.3 0.000000000000000000000000000000000001036 141.0
YHH3_k127_6839321_0 PFAM Nitroreductase - - - 0.000000000000000000000000000000000000000000004171 171.0
YHH3_k127_6839321_1 PFAM Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000008474 140.0
YHH3_k127_6839321_2 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.00000000000000000000000000001243 127.0
YHH3_k127_6858741_0 CoA binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000008184 266.0
YHH3_k127_6858741_1 membrane - - - 0.000000000000000000000000002058 115.0
YHH3_k127_688636_0 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 443.0
YHH3_k127_688636_1 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000003227 181.0
YHH3_k127_688636_2 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000001325 159.0
YHH3_k127_688636_3 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000713 53.0
YHH3_k127_6939989_0 tRNA 3'-trailer cleavage K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000009997 229.0
YHH3_k127_6939989_1 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000006733 196.0
YHH3_k127_6939989_2 Mut7-C RNAse domain K09122 - - 0.00003401 48.0
YHH3_k127_6940458_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005802 526.0
YHH3_k127_6942224_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 634.0
YHH3_k127_6942224_1 Member of the two-component regulatory system devR devS (dosR dosS) involved in onset of the dormancy response. When phosphorylated binds the promoter of at least its own and Acr (hspX) gene in response to hypoxia. Activates its own transcription under hypoxic but not aerobic conditions, probably binds as a dimer to tandem binding sites within the devR and hspX promoters. Accepts a phosphate group from devS (dosS) and from dosT K07695 - - 0.000000002674 71.0
YHH3_k127_6948880_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01535,K01537 - 3.6.3.6,3.6.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 365.0
YHH3_k127_6948880_1 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001912 286.0
YHH3_k127_6948880_2 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 - 1.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000007485 257.0
YHH3_k127_6948880_3 SMART HNH nuclease - - - 0.00000000000000000000000000000000000000000000000000007198 192.0
YHH3_k127_6963345_0 PBP superfamily domain K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 291.0
YHH3_k127_6963345_1 ABC-type tungstate transport system, periplasmic component K05773 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006138 258.0
YHH3_k127_6963345_2 ATPase activity K01990 - - 0.00000000009229 64.0
YHH3_k127_6966875_0 MscS Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000004291 178.0
YHH3_k127_6966875_1 TFIIE alpha subunit - - - 0.00000000000000000000000000004541 120.0
YHH3_k127_6970391_0 PFAM Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000002088 212.0
YHH3_k127_6989404_0 DegT/DnrJ/EryC1/StrS aminotransferase family K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 494.0
YHH3_k127_6989404_1 Lrp/AsnC ligand binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000002185 220.0
YHH3_k127_6989404_2 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000002945 68.0
YHH3_k127_6989404_3 Winged helix DNA-binding domain - - - 0.0000001513 59.0
YHH3_k127_6992291_0 Male sterility protein K21793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 437.0
YHH3_k127_6992291_1 PFAM Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008629 433.0
YHH3_k127_6992291_2 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.00000000000000000000000000000000000000000000000000000000001541 217.0
YHH3_k127_6992291_3 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000007013 166.0
YHH3_k127_6992291_4 Histidine kinase - - - 0.0002096 46.0
YHH3_k127_6992949_0 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001764 295.0
YHH3_k127_6992949_1 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000001829 232.0
YHH3_k127_7005986_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 315.0
YHH3_k127_7005986_1 Elongation factor SelB, winged helix K03833 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004405 280.0
YHH3_k127_7005986_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.0000000000000000000000000000000000000002179 159.0
YHH3_k127_7005986_3 Bacterial transferase hexapeptide (six repeats) - - - 0.00000000000000000000000000000000001457 141.0
YHH3_k127_7005986_4 Belongs to the UPF0434 family - - - 0.000000000000000000002201 94.0
YHH3_k127_7007191_0 amine oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002307 379.0
YHH3_k127_7007191_1 Protein of unknown function (DUF2089) - - - 0.0000000000000000000000000002416 115.0
YHH3_k127_7009774_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 342.0
YHH3_k127_7009774_1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.00000000000000000000000000002005 119.0
YHH3_k127_7015325_0 lysyl-tRNA aminoacylation K04567 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101 470.0
YHH3_k127_7015325_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000004156 196.0
YHH3_k127_7026866_0 Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde K00656,K20038 - 2.3.1.54,4.3.99.4 0.00000000000000000000000000000000000000000000000000000002444 207.0
YHH3_k127_7026866_1 Methylmuconolactone methyl-isomerase - - - 0.000000000000006469 79.0
YHH3_k127_7027859_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 1.843e-248 781.0
YHH3_k127_7027859_1 Cysteine-rich domain - - - 0.0000000000000000000000000000000000000003017 151.0
YHH3_k127_7034466_0 FAD binding domain K16051 - 1.3.99.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004756 290.0
YHH3_k127_7089290_0 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005258 400.0
YHH3_k127_7089743_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004885 481.0
YHH3_k127_7089743_1 2-hydroxyglutaryl-CoA dehydratase, D-component - - - 0.000000000000000000000000000000000000000004478 157.0
YHH3_k127_7089743_2 Alpha beta hydrolase - - - 0.000000000000000005008 85.0
YHH3_k127_7097615_0 PFAM PQQ enzyme repeat - - - 0.00000000000000000000000000000000000003398 156.0
YHH3_k127_7128669_0 enoyl-[acyl-carrier-protein] reductase (NADH) activity K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000000003411 159.0
YHH3_k127_7128669_1 4'-phosphopantetheinyl transferase superfamily K06133 - - 0.00000000000000000000000000000000000000843 152.0
YHH3_k127_7159616_0 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000009093 235.0
YHH3_k127_7159616_1 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.00000000000000000000000000000000000000000000000000000004431 200.0
YHH3_k127_7159616_2 reductase, subunit A K16950 - - 0.0000000000000000000000000003573 121.0
YHH3_k127_7159616_3 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.0000000000000000000001426 98.0
YHH3_k127_71800_0 PFAM Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000005585 208.0
YHH3_k127_71800_1 membrane - - - 0.000000001427 71.0
YHH3_k127_7234770_0 HEAT repeat - - - 0.00000000000000000000000003999 114.0
YHH3_k127_7247759_0 Carboxylesterase family K03929 - - 0.000000000000000000000000000002337 130.0
YHH3_k127_7247759_1 Domain of unknown function (DUF4389) - - - 0.00000343 53.0
YHH3_k127_7274658_0 PFAM Glycosyl transferase, group 1 K16150 - 2.4.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 327.0
YHH3_k127_7412996_0 ig-like, plexins, transcription factors - - - 0.000009213 52.0
YHH3_k127_7443640_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006864 293.0
YHH3_k127_7443640_1 ACT domain K01653 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000001868 225.0
YHH3_k127_7443640_2 Protein of unknown function (DUF2851) - - - 0.00000000000000000000002835 111.0
YHH3_k127_7447587_0 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 8.645e-194 620.0
YHH3_k127_7447587_1 PFAM thiamine pyrophosphate protein domain protein TPP-binding K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 409.0
YHH3_k127_7447587_2 PFAM Rubredoxin-type Fe(Cys)4 protein - GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0017144,GO:0022900,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0055114,GO:0072592 - 0.0000000000000000000004512 98.0
YHH3_k127_745405_0 acetone carboxylase K10856 - 6.4.1.6 0.0000000000000000000000000000000000000000000000000000000001672 206.0
YHH3_k127_745405_1 PFAM glutaredoxin - - - 0.000000000000000000000000000000004274 129.0
YHH3_k127_745405_2 Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.000000000000000000000000000000004391 129.0
YHH3_k127_745405_3 Ferredoxin thioredoxin reductase catalytic beta chain - - - 0.00000000000000000000000002253 109.0
YHH3_k127_7502338_0 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 564.0
YHH3_k127_7502338_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 559.0
YHH3_k127_7502338_10 L-carnitine dehydratase bile acid-inducible protein F - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006402 299.0
YHH3_k127_7502338_11 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004873 288.0
YHH3_k127_7502338_12 Acyl-CoA dehydrogenase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002819 286.0
YHH3_k127_7502338_13 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000213 254.0
YHH3_k127_7502338_14 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000242 254.0
YHH3_k127_7502338_15 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003599 248.0
YHH3_k127_7502338_16 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000001609 221.0
YHH3_k127_7502338_17 histidine kinase A domain protein K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000002197 217.0
YHH3_k127_7502338_18 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.00000000000000000000000000000000000000000000000005466 182.0
YHH3_k127_7502338_19 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000003928 177.0
YHH3_k127_7502338_2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840 - 5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003131 557.0
YHH3_k127_7502338_20 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.000000000000000000000000000000000000000004287 158.0
YHH3_k127_7502338_21 PFAM ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000005573 145.0
YHH3_k127_7502338_22 4Fe-4S dicluster domain K16950 - - 0.0000000000000000000000004519 106.0
YHH3_k127_7502338_3 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 369.0
YHH3_k127_7502338_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002639 366.0
YHH3_k127_7502338_5 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 354.0
YHH3_k127_7502338_6 L-carnitine dehydratase bile acid-inducible protein F - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 355.0
YHH3_k127_7502338_7 Histidine kinase K07777 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 346.0
YHH3_k127_7502338_8 Bacterial phospho-glucose isomerase C-terminal SIS domain K15916 - 5.3.1.8,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007607 327.0
YHH3_k127_7502338_9 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005264 299.0
YHH3_k127_7525582_0 Glutamine amidotransferase domain K01953 - 6.3.5.4 0.00000000000000000000000000000000000000000000002653 191.0
YHH3_k127_7525582_1 CoA binding domain - - - 0.000000000000001898 84.0
YHH3_k127_7525582_2 - - - - 0.00005419 51.0
YHH3_k127_7547409_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007389 397.0
YHH3_k127_7547409_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123,K05299 - 1.17.1.10,1.17.1.9 0.0000000000000000000000000000000000000838 145.0
YHH3_k127_7661032_0 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0 1025.0
YHH3_k127_7661032_1 Cysteine-rich domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001223 407.0
YHH3_k127_7850707_0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 351.0
YHH3_k127_7850707_1 Pyruvate ferredoxin/flavodoxin oxidoreductase K00177 - 1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000644 232.0
YHH3_k127_7850707_2 ACT domain - - - 0.00000000000000000000000000000000000000000000000000003367 191.0
YHH3_k127_7850707_3 - - - - 0.00000000000000000000000000000006509 126.0
YHH3_k127_7850707_4 Pyruvate:ferredoxin oxidoreductase core domain II K00174,K00186 - 1.2.7.11,1.2.7.3,1.2.7.7 0.000000000000000001682 86.0
YHH3_k127_785259_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00260,K00261,K00262 - 1.4.1.2,1.4.1.3,1.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 591.0
YHH3_k127_785259_1 Ribonuclease R winged-helix domain K09720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 349.0
YHH3_k127_785259_2 Two component transcriptional regulator, winged helix family K07667 - - 0.0000000000000000000000000000000000000000000000000009159 191.0
YHH3_k127_785259_3 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000001545 193.0
YHH3_k127_785259_4 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000002236 120.0
YHH3_k127_7860195_0 binding domain K03388 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 2.065e-215 692.0
YHH3_k127_7860195_1 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K00125 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 332.0
YHH3_k127_7860195_2 heterodisulfide reductase K03389 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001455 287.0
YHH3_k127_7860195_3 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003368 297.0
YHH3_k127_7860195_4 PFAM methyl-viologen-reducing hydrogenase delta subunit K14127 - 1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000000000000000004858 193.0
YHH3_k127_7860195_5 4Fe-4S dicluster domain K03389,K03390,K16887,K18930 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6 0.000000000000000000000000000000000000000001676 162.0
YHH3_k127_7860195_6 4Fe-4S dicluster domain K00184,K08358 - - 0.00000000006224 63.0
YHH3_k127_7882404_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004692 554.0
YHH3_k127_7882404_1 Pyruvate flavodoxin ferredoxin oxidoreductase domain protein K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000001133 246.0
YHH3_k127_7884571_0 Sir2 family K11416,K11417 - 2.4.2.31 0.000000000000000000000000000000000000000000000000004572 191.0
YHH3_k127_7884571_1 PAC2 family - - - 0.00000000000000000000000000000000000000001735 156.0
YHH3_k127_7884571_2 SnoaL-like domain - - - 0.000000000000000000009287 100.0
YHH3_k127_7884571_3 - - - - 0.00001758 52.0
YHH3_k127_7907040_0 Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy. The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase K00192 - 1.2.7.4 0.0000000000000002082 89.0
YHH3_k127_7907040_1 PFAM CO dehydrogenase acetyl-CoA synthase complex beta subunit K14138 - 2.3.1.169 0.0000008828 58.0
YHH3_k127_7918854_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 460.0
YHH3_k127_7918854_1 GTPase activity K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003458 310.0
YHH3_k127_7918854_2 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K00219,K01069 - 1.3.1.34,3.1.2.6 0.000000000000000000000000000000000000009462 154.0
YHH3_k127_7918854_3 B12 binding domain K01849 - 5.4.99.2 0.0000000000000000000000000000000005939 135.0
YHH3_k127_79227_0 Homocysteine biosynthesis enzyme, sulfur-incorporation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005835 580.0
YHH3_k127_79227_1 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004208 289.0
YHH3_k127_79227_2 Transcriptional regulator - - - 0.0000000000000000000000000000000000000001875 154.0
YHH3_k127_79227_3 NIL - - - 0.00000000000000001381 88.0
YHH3_k127_7990617_0 PFAM iron-containing alcohol dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 439.0
YHH3_k127_7990617_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005914 327.0
YHH3_k127_7990617_2 SCP-2 sterol transfer family - - - 0.0000000000000000000000000000000004786 135.0
YHH3_k127_7990617_3 Coenzyme A transferase K01029 - 2.8.3.5 0.00000000000000000002712 92.0
YHH3_k127_7996290_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0042802,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 2.567e-225 723.0
YHH3_k127_7996290_1 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000001443 93.0
YHH3_k127_7996290_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.000000000000001113 76.0
YHH3_k127_8022278_0 Bacterial transcription activator, effector binding domain - - - 0.0000000000000000000000000001099 122.0
YHH3_k127_8063120_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000009576 225.0
YHH3_k127_8063120_1 Male sterility protein - - - 0.0000000000000000000000000000000000000000000000009673 180.0
YHH3_k127_8063120_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000001245 152.0
YHH3_k127_8071154_0 ATPase involved in DNA repair - - - 0.00000000000000000000000000000000000000000000000000000008807 218.0
YHH3_k127_8071154_1 3'-5' exonuclease activity K03547 - - 0.0000000000000000000000000000000000003256 147.0
YHH3_k127_8077902_0 FAD linked oxidases, C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002065 277.0
YHH3_k127_8077902_1 Transcriptional regulator, arsR family - - - 0.000000000000000000000002243 106.0
YHH3_k127_8083912_0 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000001015 185.0
YHH3_k127_8083912_1 Flavin containing amine oxidoreductase - - - 0.0000000000000000008784 93.0
YHH3_k127_8231592_0 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 5.165e-219 690.0
YHH3_k127_8231592_1 hydro-lyase, Fe-S type, tartrate fumarate subfamily, alpha subunit K01677 - 4.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001453 340.0
YHH3_k127_8231592_2 Bifunctional nuclease K08999 - - 0.000000000000000000000000000000000000000000000000000000000000006395 222.0
YHH3_k127_8231592_3 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0000000000000000000003931 101.0
YHH3_k127_8231592_4 - - - - 0.000000000262 65.0
YHH3_k127_8231592_5 PFAM tRNA synthetase class II (G H P and S) K01892 - 6.1.1.21 0.0000003612 54.0
YHH3_k127_8316981_0 UvrD/REP helicase N-terminal domain K03657 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 523.0
YHH3_k127_8317247_0 PFAM Radical SAM domain protein K06937 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 407.0
YHH3_k127_8317247_1 Mechanosensitive ion channel K22044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 326.0
YHH3_k127_8317247_2 NAD(P)-binding Rossmann-like domain - - - 0.00000000000000000000000000003695 119.0
YHH3_k127_8325331_0 acetyl-CoA hydrolase K18288 - - 0.000000000000000000000000000000000000000000000000000000915 198.0
YHH3_k127_8325331_1 Probable zinc-ribbon domain - - - 0.0000000000000000000000000000000000461 136.0
YHH3_k127_8325331_2 RNA recognition motif - - - 0.0000000000000000000000000004073 116.0
YHH3_k127_8337069_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 2.652e-219 689.0
YHH3_k127_8337069_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 5.115e-216 678.0
YHH3_k127_8337069_2 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 474.0
YHH3_k127_8337069_3 Ammonium Transporter Family K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003997 424.0
YHH3_k127_8337069_4 Ribonuclease R winged-helix domain K09720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002237 317.0
YHH3_k127_8337069_5 Nitrogen regulatory protein P-II K04751 - - 0.00000000000000000000000000000000000000001358 155.0
YHH3_k127_8344166_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000004567 269.0
YHH3_k127_8344166_1 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000002734 65.0
YHH3_k127_83471_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 422.0
YHH3_k127_83471_1 PFAM Archease protein family (DUF101 UPF0211) - - - 0.00000000000000000000000000000001412 130.0
YHH3_k127_83471_2 GlcNAc-PI de-N-acetylase - - - 0.00000000000000001837 92.0
YHH3_k127_8356016_0 Alpha amylase catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001404 329.0
YHH3_k127_8356016_1 Benzoyl-CoA reductase 2-hydroxyglutaryl-CoA dehydratase subunit BcrC BadD HgdB - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 303.0
YHH3_k127_8356016_2 2-hydroxyglutaryl-CoA dehydratase, D-component K04113 - 1.3.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000434 275.0
YHH3_k127_8356016_3 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000004953 222.0
YHH3_k127_8356016_4 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000001437 181.0
YHH3_k127_8389563_0 PFAM UDP-glucose GDP-mannose dehydrogenase K02472 - 1.1.1.336 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 402.0
YHH3_k127_8389563_1 Oxidoreductase family, NAD-binding Rossmann fold K18855 - 1.1.1.374 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 313.0
YHH3_k127_8389563_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000322 287.0
YHH3_k127_8389563_3 4-amino-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate biosynthetic process - - - 0.000000000000000000000000000000000000000000000000000000000000000000006608 244.0
YHH3_k127_8389563_4 COG0110 Acetyltransferase (isoleucine patch superfamily) - - - 0.000000000000000000000000000000000000000000000729 181.0
YHH3_k127_8389563_5 Belongs to the DegT DnrJ EryC1 family K13010 - 2.6.1.102 0.000000000000000000000000000000000000000000000991 180.0
YHH3_k127_8389563_6 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000008579 102.0
YHH3_k127_8407023_0 metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001555 328.0
YHH3_k127_8407023_1 Coenzyme A transferase K01029 - 2.8.3.5 0.00000000000000000000000000000000000000000000000002182 184.0
YHH3_k127_8439704_0 in signal transduction K08482 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001345 564.0
YHH3_k127_8439704_1 cellulose 1,4-beta-cellobiosidase activity - - - 0.00000000000000000004621 102.0
YHH3_k127_8486854_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 GO:0000050,GO:0003674,GO:0003824,GO:0004087,GO:0004088,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019627,GO:0019752,GO:0034641,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 6.3.5.5 0.0 1337.0
YHH3_k127_8486854_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000003445 96.0
YHH3_k127_8497094_0 by modhmm K03655 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004061 309.0
YHH3_k127_8497094_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000006412 243.0
YHH3_k127_8497094_2 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000001246 158.0
YHH3_k127_8497094_3 RDD family - - - 0.00000000000000000000000000000000009321 151.0
YHH3_k127_8497094_4 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000000000000000000005776 136.0
YHH3_k127_8497094_5 Protein of unknown function (DUF433) - - - 0.0000000002 67.0
YHH3_k127_8497094_6 - - - - 0.0001006 46.0
YHH3_k127_8520876_0 Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha- epsilon complex generates CO from CO(2), while the beta subunit (this protein) combines the CO with CoA and a methyl group to form acetyl-CoA. The methyl group, which is incorporated into acetyl- CoA, is transferred to the beta subunit by a corrinoid iron-sulfur protein (the gamma-delta complex) K00192,K00193 - 1.2.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 304.0
YHH3_k127_8520876_1 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000462 279.0
YHH3_k127_8520876_2 Collagen triple helix repeat (20 copies) - - - 0.00000000000000133 85.0
YHH3_k127_8545663_0 Formylmethanofuran dehydrogenase, subunit B K00201 - 1.2.7.12 0.000000000000000000000000000000000000002029 154.0
YHH3_k127_8545663_1 Magnesium chelatase, subunit ChlI K03405 - 6.6.1.1 0.00000000001111 78.0
YHH3_k127_8545663_2 AAA domain K07321 - - 0.0000000001164 64.0
YHH3_k127_85531_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 3.388e-250 783.0
YHH3_k127_85531_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006315 587.0
YHH3_k127_85531_2 SMART Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002041 305.0
YHH3_k127_85531_3 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000007932 258.0
YHH3_k127_85531_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.000000000000000000000000000000000000000000000000000000000000000001231 235.0
YHH3_k127_85531_5 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000001567 149.0
YHH3_k127_85531_6 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000003129 92.0
YHH3_k127_86162_0 Peptidase family M20/M25/M40 K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003187 330.0
YHH3_k127_86162_1 Coenzyme A transferase K01029 - 2.8.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000002264 258.0
YHH3_k127_86162_2 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000003524 267.0
YHH3_k127_86162_3 TIGRFAM 3-oxoacid CoA-transferase, A subunit K01031 - 2.8.3.6 0.00000000000000000000000000000000000000000000000000000000000000000003272 241.0
YHH3_k127_86162_4 Flavin containing amine oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000003572 239.0
YHH3_k127_86162_5 Domain of unknown function (DUF296) - - - 0.00000000000000000000000000000000000000000000000000000000007697 209.0
YHH3_k127_86162_6 ferredoxin iron-sulfur binding - - - 0.00000000000000000000000000000000000000000000008733 181.0
YHH3_k127_86162_7 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000002378 136.0
YHH3_k127_86162_8 Glutathione S-transferase, N-terminal domain - - - 0.00000000000006836 74.0
YHH3_k127_8683311_0 PFAM DAHP synthetase I KDSA K01626,K03856 - 2.5.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000002236 252.0
YHH3_k127_8683311_1 Riboflavin kinase K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000001943 183.0
YHH3_k127_8691341_0 Peptidase C13 family - - - 0.0000000000000000000000000000000000001789 162.0
YHH3_k127_8691341_1 domain protein - - - 0.00000000000000000000000002527 126.0
YHH3_k127_8691341_2 cellulose 1,4-beta-cellobiosidase activity - - - 0.00000007519 66.0
YHH3_k127_8784542_0 Heavy-metal-associated domain K01533,K17686 - 3.6.3.4,3.6.3.54 1.549e-218 692.0
YHH3_k127_8789465_0 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 509.0
YHH3_k127_8789465_1 CO dehydrogenase K07321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008358 293.0
YHH3_k127_8789465_2 PFAM NHL repeat containing protein - - - 0.000000000001099 81.0
YHH3_k127_8789465_3 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.00000000005539 75.0
YHH3_k127_8789465_4 Fibronectin type 3 domain K20276 - - 0.000773 52.0
YHH3_k127_8801193_0 Armadillo/beta-catenin-like repeats - - - 0.0000000000000000000000000000000000000000000000000000119 203.0
YHH3_k127_8801193_1 - - - - 0.00000000001048 72.0
YHH3_k127_8816772_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.0000000000000000000000000000000000000000000000001718 181.0
YHH3_k127_8816772_1 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.000000000000000000000000007606 115.0
YHH3_k127_8843372_0 AMP-binding enzyme K01897 - 6.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002949 602.0
YHH3_k127_8843372_1 PFAM AMP-dependent synthetase and ligase K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005751 315.0
YHH3_k127_8843372_2 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003051 295.0
YHH3_k127_8843372_3 ADP-glyceromanno-heptose 6-epimerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000163 261.0
YHH3_k127_8843372_4 ABC 3 transport family K09816,K09819 - - 0.00000000000000000000000000000000000000000000000000000000000000000000294 243.0
YHH3_k127_8843372_5 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.000000000000000000000000000000000000000000000000000000000149 215.0
YHH3_k127_8843372_6 PFAM Nitroreductase - - - 0.00000000000000000000000000000000000000000000006702 179.0
YHH3_k127_8843372_7 ABC-type Mn2 Zn2 transport system, permease component K09816,K09819,K19976 - - 0.00000000000000001965 85.0
YHH3_k127_8843372_8 C COG0778 Nitroreductase - - - 0.0000000004453 61.0
YHH3_k127_8843372_9 Receptor family ligand binding region - - - 0.00004091 56.0
YHH3_k127_8847649_0 glycerolipid metabolic process K00057 GO:0003674,GO:0003824,GO:0004367,GO:0006072,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019637,GO:0044237,GO:0046167,GO:0052646,GO:0055114,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901576 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003855 295.0
YHH3_k127_8847649_1 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000005017 145.0
YHH3_k127_8847649_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000003363 80.0
YHH3_k127_8848523_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004409 346.0
YHH3_k127_8848523_1 Mediates influx of magnesium ions K03284 - - 0.0000000000000000000000000000000000000000000000000000000001364 212.0
YHH3_k127_8848798_0 - - - - 0.00000000000003326 85.0
YHH3_k127_8859026_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006682 485.0
YHH3_k127_8859026_1 Aminotransferase class-V - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004142 374.0
YHH3_k127_8859026_2 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.000000000003955 68.0
YHH3_k127_8888053_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.805e-266 853.0
YHH3_k127_8888053_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007176 594.0
YHH3_k127_8888053_2 Hemolysins and related proteins containing CBS domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007153 352.0
YHH3_k127_8888053_3 Pyridoxal phosphate biosynthetic protein PdxA K00097 - 1.1.1.262 0.00000000000000000000000000000000005334 135.0
YHH3_k127_8888053_4 - - - - 0.0000000004215 68.0
YHH3_k127_8936731_0 PFAM NADPH-dependent FMN reductase - - - 0.000000000000000000000005707 102.0
YHH3_k127_8936731_1 Transcriptional regulator - - - 0.0000000000002577 76.0
YHH3_k127_8973251_0 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004235 407.0
YHH3_k127_8973251_1 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009852 330.0
YHH3_k127_8973251_2 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000001732 113.0
YHH3_k127_8973251_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000001669 99.0
YHH3_k127_8973251_4 phosphatidate phosphatase activity K19302 - 3.6.1.27 0.0000001573 57.0
YHH3_k127_9167246_0 Glycosyl transferases group 1 K08256 - 2.4.1.345 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 338.0
YHH3_k127_9167246_1 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.0000000000000000000000000000000000007115 141.0
YHH3_k127_922633_0 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 5.409e-290 908.0
YHH3_k127_922633_1 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 470.0
YHH3_k127_922633_2 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 381.0
YHH3_k127_922633_3 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 - 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000003747 206.0
YHH3_k127_923126_0 Arsenical pump membrane protein K03893 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 572.0
YHH3_k127_923126_1 Domain of unknown function (DUF4070) - - - 0.00000000000000000000000000000000000000000000000000000000000000000006192 235.0
YHH3_k127_923126_2 -O-antigen - - - 0.0002934 48.0
YHH3_k127_9273679_0 Belongs to the glycosyl hydrolase 31 family K01811 - 3.2.1.177 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004486 595.0
YHH3_k127_9273679_1 fructose-1,6-bisphosphatase K02446 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0030145,GO:0030388,GO:0042132,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046872,GO:0046914,GO:0050308,GO:0071704,GO:1901135,GO:1901576 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005869 399.0
YHH3_k127_9290190_0 PFAM Nitroreductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001648 259.0
YHH3_k127_9290190_1 Nitroreductase family - - - 0.0000001766 56.0
YHH3_k127_9290190_2 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K17830 - 1.3.1.101,1.3.7.11 0.000001215 59.0
YHH3_k127_92921_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 514.0
YHH3_k127_92921_1 Bacterial dnaA protein K02315 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007061 436.0
YHH3_k127_92921_2 Uncharacterized protein family UPF0004 K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002962 344.0
YHH3_k127_92921_3 TIGRFAM primosome, DnaD subunit - - - 0.000000000000000000000000000000000002114 147.0
YHH3_k127_9300863_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 6.598e-241 758.0
YHH3_k127_9300863_1 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000003322 260.0
YHH3_k127_9300863_2 Reverse transcriptase-like K03469 - 3.1.26.4 0.0000000000000000000000000000000001947 140.0
YHH3_k127_9300863_3 Zn-ribbon protein possibly nucleic acid-binding K07164 - - 0.00000000000000000000000000003128 130.0
YHH3_k127_9300863_4 - - - - 0.00000004759 63.0
YHH3_k127_9346087_0 PFAM Methylene-tetrahydrofolate reductase C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001487 284.0
YHH3_k127_9346087_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K15022,K18331 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0044237,GO:0044424,GO:0044464,GO:0045333,GO:0055114,GO:0071944 1.12.1.3,1.17.1.10,1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000001846 235.0
YHH3_k127_9346087_2 PFAM Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 0.000000000000006585 78.0
YHH3_k127_9358000_0 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001258 576.0
YHH3_k127_9358000_1 Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 550.0
YHH3_k127_9358000_2 arginine biosynthetic process via ornithine K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011 537.0
YHH3_k127_9403191_0 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000008159 267.0
YHH3_k127_9403191_1 IMP dehydrogenase / GMP reductase domain K00088 - 1.1.1.205 0.00000000000000000000000000000000000000000000000000000000000000000000002422 244.0
YHH3_k127_9440785_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 304.0
YHH3_k127_9440785_1 MscS Mechanosensitive ion channel - - - 0.000000000000000000000000000000000000000000000000000000000000000000003034 242.0
YHH3_k127_9447897_0 Archaeal Type IV pilin, N-terminal - - - 0.000002046 61.0
YHH3_k127_9531511_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 6.665e-226 713.0
YHH3_k127_9531511_1 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004923 380.0
YHH3_k127_9531511_2 ABC transporter K01996 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005744 320.0
YHH3_k127_9531511_3 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000002691 119.0
YHH3_k127_9531511_4 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000001716 96.0
YHH3_k127_956009_0 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001562 276.0
YHH3_k127_956009_1 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000001604 171.0
YHH3_k127_956009_2 NYN domain - - - 0.0000000000000000000000000000000000000002019 157.0
YHH3_k127_956009_3 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000002967 75.0
YHH3_k127_958915_0 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 509.0
YHH3_k127_958915_1 SMART Elongator protein 3 MiaB NifB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 306.0
YHH3_k127_958915_2 choline dehydrogenase activity K03333 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009405,GO:0016491,GO:0016614,GO:0016899,GO:0016995,GO:0044419,GO:0051704,GO:0055114 1.1.3.6 0.00000000000000000000000000000008477 128.0
YHH3_k127_958915_3 transmembrane transport K02025,K10118,K15771 - - 0.000000000000000000000001894 111.0
YHH3_k127_958915_4 SCP-2 sterol transfer family - - - 0.00007705 51.0
YHH3_k127_9589316_0 Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha- epsilon complex generates CO from CO(2), while the beta subunit (this protein) combines the CO with CoA and a methyl group to form acetyl-CoA. The methyl group, which is incorporated into acetyl- CoA, is transferred to the beta subunit by a corrinoid iron-sulfur protein (the gamma-delta complex) K00192,K00193 - 1.2.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004003 289.0
YHH3_k127_9691226_0 4Fe-4S dicluster domain - - - 0.00000000000001576 83.0
YHH3_k127_9691226_1 acyl-CoA dehydrogenase K00252 - 1.3.8.6 0.0006314 45.0
YHH3_k127_9696173_0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 9.138e-206 660.0
YHH3_k127_9696173_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005593 484.0
YHH3_k127_9696173_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 324.0
YHH3_k127_9696173_3 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000008907 148.0
YHH3_k127_9696173_4 4Fe-4S dicluster domain K05580 - 1.6.5.3 0.000000000000000000000000000000000006665 142.0
YHH3_k127_9696173_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K05576 - 1.6.5.3 0.00000000000000000000000000001398 128.0
YHH3_k127_9703262_0 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001007 315.0
YHH3_k127_9703262_1 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000001884 161.0
YHH3_k127_970709_0 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.0000000000000000000000000001113 127.0
YHH3_k127_9715969_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 1.77e-316 990.0
YHH3_k127_9715969_1 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.000000000000000000000000000000000000000000000000000000000000002933 227.0
YHH3_k127_9715969_2 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.00000000000000000000000000000000000000000000000001108 186.0
YHH3_k127_9725205_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009882 325.0
YHH3_k127_9725205_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000002785 265.0
YHH3_k127_9725205_2 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.00000000000000000000000000000000000000000000000154 186.0
YHH3_k127_9753150_0 Necessary for formate dehydrogenase activity K02380 - - 0.000000000000000000000002318 114.0
YHH3_k127_9753150_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0003166 44.0
YHH3_k127_9758404_0 Nucleotidyl transferase AbiEii toxin, Type IV TA system K09144 - - 0.000000000000000000000000000000007828 138.0
YHH3_k127_980012_0 Nickel-dependent hydrogenase K14126 - 1.8.98.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 585.0
YHH3_k127_980012_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 458.0
YHH3_k127_980012_2 Domain of unknown function (DUF4131) K02238 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007228 435.0
YHH3_k127_980012_3 Coenzyme F420-reducing hydrogenase, gamma subunit K14128 - 1.8.98.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001997 385.0
YHH3_k127_980012_4 ATP-grasp domain K22224 - 6.2.1.13 0.00000000000000000000000000000000000000000000000000000000000000000167 233.0
YHH3_k127_980012_5 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000006547 153.0
YHH3_k127_980012_6 Transcription factor zinc-finger K09981 - - 0.0000000000000000000000000002917 119.0
YHH3_k127_980012_7 LemA family K03744 - - 0.000000000000000000000000000323 117.0
YHH3_k127_980012_8 SLBB domain K02237 - - 0.000000000000000000003945 99.0
YHH3_k127_980012_9 Signal recognition particle 54 kDa protein K03106 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016043,GO:0019904,GO:0022607,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051259,GO:0051291,GO:0065003,GO:0070206,GO:0070208,GO:0071840 3.6.5.4 0.00002242 48.0
YHH3_k127_9826565_0 helicase superfamily c-terminal domain K11927 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004107 407.0
YHH3_k127_9826565_1 metal-dependent phosphohydrolase HD sub domain - - - 0.0000000000000000000000000000000000000000000000000000002637 205.0
YHH3_k127_9840621_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 2.29e-238 764.0
YHH3_k127_9840621_1 formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 1.287e-211 670.0
YHH3_k127_9840621_2 PFAM glycosyl transferase family 2 K14597 - - 0.0000000000000000000000000000000000000000000000000000000000000004498 234.0
YHH3_k127_9840621_3 formate dehydrogenase, alpha subunit K00123 - 1.17.1.9 0.0000000000000000000000000000000005809 132.0
YHH3_k127_9881136_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002474 609.0
YHH3_k127_9881136_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.000000000000000000000000000000000000000000000000002039 186.0
YHH3_k127_9951090_0 GTP binding K06944 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006824 257.0
YHH3_k127_9978624_0 Prismane/CO dehydrogenase family K00198 - 1.2.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 317.0
YHH3_k127_9978624_1 Predicted permease K07089 - - 0.000000000000000000000000000000000592 132.0
YHH3_k127_9978624_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000002399 106.0