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Overview

ID MAG04586
Name YHH3_bin.56
Sample SMP0123
Taxonomy
Kingdom Bacteria
Phylum Pseudomonadota
Class Gammaproteobacteria
Order Burkholderiales
Family Nitrosomonadaceae
Genus Nitrosomonas
Species
Assembly information
Completeness (%) 77.43
Contamination (%) 2.54
GC content (%) 44.0
N50 (bp) 7,162
Genome size (bp) 1,910,834

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1914

Gene name Description KEGG GOs EC E-value Score Sequence
YHH3_k127_10004972_0 Cytochrome c-type biogenesis protein CcmF K02198 - - 5.086e-229 715.0
YHH3_k127_10004972_1 oxidoreductase DsbE K02199 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004183 304.0
YHH3_k127_10004972_2 subunit of a heme lyase K02200 - - 0.000000000000000000000000000000000000000000000002575 179.0
YHH3_k127_10004972_3 Tetratricopeptide repeat K02200 - - 0.000000000000000000000000000000000000007992 147.0
YHH3_k127_10029582_0 DeoC/LacD family aldolase K11645 - 4.1.2.13 1.437e-203 636.0
YHH3_k127_10029582_1 PFAM glycosidase related protein - - - 0.000000000000000000000000000000000000000000000000000000000001409 222.0
YHH3_k127_10029582_2 PFAM glycosidase PH1107-related K20885 - 2.4.1.339,2.4.1.340 0.0000000000000000003272 91.0
YHH3_k127_10029582_3 IS66 Orf2-like K07484 - - 0.0000000004742 66.0
YHH3_k127_10029582_4 PFAM Transposase, IS66 K07484 - - 0.00000003061 54.0
YHH3_k127_10067474_0 Pfam:Methyltransf_26 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008756 587.0
YHH3_k127_10067474_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007877 453.0
YHH3_k127_10067474_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007157 284.0
YHH3_k127_10067474_3 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K03802,K05844 - 6.3.2.29,6.3.2.30 0.00000000000000000000000000000000000000000000000000000000000000000001978 242.0
YHH3_k127_10067474_4 MazG-like family - - - 0.000000000000000000000000000000000000000000000000000004367 191.0
YHH3_k127_10067474_5 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000005035 103.0
YHH3_k127_10067474_6 - - - - 0.00000000000000000001284 95.0
YHH3_k127_10067474_7 VanZ like family - - - 0.000000000000000004927 89.0
YHH3_k127_10140269_0 COG1071 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit K11381 - 1.2.4.4 7.837e-293 912.0
YHH3_k127_10140269_1 Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly K02386 - - 0.000000000000000000000000000000000000000000000000006016 184.0
YHH3_k127_10140269_2 S-acyltransferase activity K00163,K00382,K00627 - 1.2.4.1,1.8.1.4,2.3.1.12 0.0000000000000000000002402 99.0
YHH3_k127_10158130_0 Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn) K01876 - 6.1.1.12 0.0 1056.0
YHH3_k127_10158130_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 4.79e-292 899.0
YHH3_k127_10158130_10 Putative regulatory protein - - - 0.00000000000000000000000000000001295 130.0
YHH3_k127_10158130_11 - - - - 0.0000000003022 63.0
YHH3_k127_10158130_12 - - - - 0.00007484 49.0
YHH3_k127_10158130_2 TIGRFAM Mannose-1-phosphate guanylyltransferase mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 1.166e-254 791.0
YHH3_k127_10158130_3 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 3.611e-251 779.0
YHH3_k127_10158130_4 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 2.001e-197 619.0
YHH3_k127_10158130_5 pfkB family carbohydrate kinase K00852,K00856 - 2.7.1.15,2.7.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007735 548.0
YHH3_k127_10158130_6 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K11065 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 303.0
YHH3_k127_10158130_7 Nudix hydrolase K08310 - 3.6.1.67 0.00000000000000000000000000000000000000000000000000000000000000000000001326 244.0
YHH3_k127_10158130_8 PFAM Type IV pilus assembly PilZ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004926 250.0
YHH3_k127_10158130_9 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000000000000000000000108 214.0
YHH3_k127_10163436_0 Glycosyltransferase like family 2 K20444 - - 0.0 1170.0
YHH3_k127_10163436_1 ABC transporter transmembrane region K12536 - - 6.782e-265 820.0
YHH3_k127_10163436_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003228 521.0
YHH3_k127_10163436_3 Glycosyltransferase like family K07011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004764 454.0
YHH3_k127_10163436_4 PFAM NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004385 351.0
YHH3_k127_10163436_5 Transcriptional regulator crp fnr family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 325.0
YHH3_k127_10197526_0 Protein of unknown function (DUF3422) - - - 4.249e-207 652.0
YHH3_k127_10197526_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 9.857e-201 628.0
YHH3_k127_10197526_2 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.000000001147 59.0
YHH3_k127_10197526_3 Belongs to the UPF0225 family K09858 - - 0.000000001274 60.0
YHH3_k127_10288641_0 ABC transporter transmembrane region - - - 5.75e-306 959.0
YHH3_k127_10288641_1 PFAM alpha beta hydrolase K07019 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 507.0
YHH3_k127_10390877_0 Belongs to the helicase family. UvrD subfamily K03582 - 3.1.11.5 0.0 1325.0
YHH3_k127_10390877_1 PD-(D/E)XK nuclease superfamily K01144 - 3.1.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002594 519.0
YHH3_k127_10482951_0 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 1.268e-277 859.0
YHH3_k127_10482951_1 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K01739,K10764 - 2.5.1.48 1.117e-212 664.0
YHH3_k127_10482951_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003286 554.0
YHH3_k127_10482951_3 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004006 522.0
YHH3_k127_10482951_4 Colicin V production K03558 - - 0.00000000000000000000000000000000000000000000000000000006927 200.0
YHH3_k127_10482951_5 Sporulation related domain K03749 - - 0.000000000000000000000000000000000000000000000000000002327 200.0
YHH3_k127_10482951_6 PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides K03768 - 5.2.1.8 0.000000009564 56.0
YHH3_k127_10520454_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 0.0 1036.0
YHH3_k127_10520454_1 FAD linked oxidases, C-terminal domain K00102,K03777 - 1.1.2.4,1.1.5.12 8.452e-221 691.0
YHH3_k127_10520454_10 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 GO:0000041,GO:0003674,GO:0003824,GO:0004601,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016020,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0019866,GO:0022607,GO:0030001,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034622,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051775,GO:0051920,GO:0055114,GO:0065003,GO:0070887,GO:0071840,GO:0097237,GO:0098754,GO:0098869,GO:1990748 - 0.00000002364 56.0
YHH3_k127_10520454_11 SCO1/SenC K07152 - - 0.0000001226 54.0
YHH3_k127_10520454_12 Electron transport protein SCO1 SenC K07152 - - 0.0009594 44.0
YHH3_k127_10520454_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000504 522.0
YHH3_k127_10520454_3 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001503 459.0
YHH3_k127_10520454_4 PFAM Cytochrome c oxidase assembly protein CtaG Cox11 K02258 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002389 303.0
YHH3_k127_10520454_5 SURF1-like protein K14998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 297.0
YHH3_k127_10520454_6 transport-associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004874 253.0
YHH3_k127_10520454_7 signal sequence binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000007091 238.0
YHH3_k127_10520454_8 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.00000000000000000000000000000000000002962 146.0
YHH3_k127_10520454_9 Protein of unknown function (DUF2970) - - - 0.000000000002818 69.0
YHH3_k127_10535976_0 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003651 608.0
YHH3_k127_10535976_1 Ammonium transporter K03320,K06580 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 564.0
YHH3_k127_10535976_2 PFAM Permease YjgP YjgQ K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 532.0
YHH3_k127_10535976_3 PFAM Permease YjgP YjgQ K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 514.0
YHH3_k127_10535976_4 MobA-like NTP transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008827 356.0
YHH3_k127_10535976_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002787 273.0
YHH3_k127_10535976_6 - - - - 0.000000000000000000000000000000000000000000000000000000001328 203.0
YHH3_k127_10603187_0 PFAM CagE, TrbE, VirB component of type IV transporter system K20530 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 576.0
YHH3_k127_10603187_1 COG4962 Flp pilus assembly protein, ATPase CpaF K20527 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363 502.0
YHH3_k127_10603187_2 Type IV secretory pathway, VirB3-like protein K20529 - - 0.000000000000000000000000000000000000007839 147.0
YHH3_k127_10603187_3 TrbC/VIRB2 family K20528 - - 0.000000000000000000000000000000000004209 141.0
YHH3_k127_10688335_0 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 - - 3.775e-307 951.0
YHH3_k127_10688335_1 Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 K03650 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 601.0
YHH3_k127_10688335_2 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.000000000000000000000000000000000000000000000000004191 185.0
YHH3_k127_10762650_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0 1082.0
YHH3_k127_10762650_1 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 1.695e-274 851.0
YHH3_k127_10762650_2 Gamma-glutamyltranspeptidase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 1.105e-240 754.0
YHH3_k127_10762650_3 Converts GTP to 7,8-dihydroneopterin triphosphate K09007 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 467.0
YHH3_k127_10762650_4 Belongs to the FPP GGPP synthase family K00795 - 2.5.1.1,2.5.1.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 460.0
YHH3_k127_10762650_5 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.000000000000000000000000000000000000002055 146.0
YHH3_k127_10762650_6 diguanylate cyclase - - - 0.0000000000000000000000000000000001427 138.0
YHH3_k127_10762650_7 BON domain K04065 - - 0.0000000000000000000000000007237 116.0
YHH3_k127_10762650_8 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03602 - 3.1.11.6 0.0000000000000000000000003515 106.0
YHH3_k127_10814297_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.236e-260 809.0
YHH3_k127_10814297_1 ATP synthase K02115 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009122 361.0
YHH3_k127_10814297_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000818 108.0
YHH3_k127_10814297_3 - K19168 - - 0.00000000001049 68.0
YHH3_k127_10827713_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 GO:0000162,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0042802,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.2.1.20 7.764e-245 758.0
YHH3_k127_10827713_1 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001108 395.0
YHH3_k127_10827713_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 389.0
YHH3_k127_10827713_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001702 313.0
YHH3_k127_10888617_0 Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine K12960 - 3.5.4.28,3.5.4.31 3.339e-208 652.0
YHH3_k127_10888617_1 O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway K00568 - 2.1.1.222,2.1.1.64 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000309 430.0
YHH3_k127_10888617_2 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 - 3.1.3.105 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 353.0
YHH3_k127_10888617_3 - - - - 0.0008324 47.0
YHH3_k127_10919334_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 2.732e-207 652.0
YHH3_k127_10919334_1 MCRA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008785 587.0
YHH3_k127_10919334_2 ArsC family K00537 - 1.20.4.1 0.000000000000000000000000000000000000000000000045 175.0
YHH3_k127_10919334_3 Uncharacterized protein conserved in bacteria (DUF2325) - - - 0.00000000000000000000000000000005999 134.0
YHH3_k127_10919334_4 Hemin uptake protein hemP - - - 0.00000000004577 64.0
YHH3_k127_10927237_0 ABC transporter transmembrane region K06147 - - 1.942e-320 987.0
YHH3_k127_10927237_1 SIR2-like domain - - - 3.503e-205 670.0
YHH3_k127_10992044_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 9.317e-271 837.0
YHH3_k127_10992044_1 Dynamin family - - - 1.209e-226 710.0
YHH3_k127_10992044_2 Belongs to the GcvT family K06980 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024 463.0
YHH3_k127_10992044_3 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 339.0
YHH3_k127_10992044_4 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009673 241.0
YHH3_k127_10992044_5 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.000000000000000000000000000000000000000000000000000000000001669 211.0
YHH3_k127_10992044_6 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.000000000000000000000000000000000000005929 146.0
YHH3_k127_10992044_7 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter K02116 - - 0.000000000000000000000000000000000001722 139.0
YHH3_k127_10992044_8 Transposase zinc-ribbon domain - - - 0.000000000000001113 76.0
YHH3_k127_10992044_9 Protein of unknown function (DUF502) - - - 0.0000001886 55.0
YHH3_k127_11026705_0 Response regulator receiver K02487,K03407,K06596 - 2.7.13.3 0.0 1715.0
YHH3_k127_11026705_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 GO:0006082,GO:0006520,GO:0006566,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009987,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 4.3.1.19 2.174e-277 858.0
YHH3_k127_11026705_10 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 329.0
YHH3_k127_11026705_11 Haem-degrading - - - 0.00000000000000000000000000000000000000000000000000000000000004506 216.0
YHH3_k127_11026705_12 'Cold-shock' DNA-binding domain K03704 - - 0.000000000000000000000000000000000000173 141.0
YHH3_k127_11026705_13 PFAM Transposase, IS66 K07484 - - 0.00000004457 54.0
YHH3_k127_11026705_2 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 5.634e-246 768.0
YHH3_k127_11026705_3 PFAM chemotaxis K02660 - - 1.467e-242 768.0
YHH3_k127_11026705_4 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000404 618.0
YHH3_k127_11026705_5 Pyridoxal-phosphate dependent enzyme K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 559.0
YHH3_k127_11026705_6 Bacterial transferase hexapeptide (six repeats) K00640 - 2.3.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009778 535.0
YHH3_k127_11026705_7 PFAM Fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 524.0
YHH3_k127_11026705_8 Belongs to the MtfA family K09933 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006471 346.0
YHH3_k127_11026705_9 DNA polymerase III K01141 - 3.1.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003232 341.0
YHH3_k127_11028814_0 Ferric uptake regulator family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000000008957 221.0
YHH3_k127_11028814_1 Prolyl oligopeptidase family K06889 - - 0.00000000000000000000000000000000000000000000000000000003516 198.0
YHH3_k127_11028814_2 Prolyl oligopeptidase family K06889 - - 0.00000000000000000000000000000000000000000000000000000005351 199.0
YHH3_k127_11028814_3 TonB-dependent Receptor Plug Domain K02014 - - 0.000000000000000000000000000000000000000000000000005427 185.0
YHH3_k127_11028814_4 Uncharacterized protein conserved in bacteria (DUF2141) - - - 0.000000000000000000000000000000000000000000000001117 175.0
YHH3_k127_11028814_5 - - - - 0.00000000000000000000000427 105.0
YHH3_k127_11031798_0 Domain related to MnhB subunit of Na+/H+ antiporter K05559 - - 0.0 1447.0
YHH3_k127_11031798_1 Proton-conducting membrane transporter K05561 - - 2.304e-221 696.0
YHH3_k127_11031798_10 Na+/H+ antiporter subunit K05564 - - 0.000000000000000000000000000000000000000000009269 165.0
YHH3_k127_11031798_11 Multiple resistance and pH regulation protein F K05563 - - 0.00000000000000000000000000000002595 127.0
YHH3_k127_11031798_13 - - - - 0.000000000000000001989 85.0
YHH3_k127_11031798_2 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008805 550.0
YHH3_k127_11031798_3 Belongs to the BI1 family K19416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005728 368.0
YHH3_k127_11031798_4 YaeQ - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003528 294.0
YHH3_k127_11031798_5 Zinc-dependent metalloprotease - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004426 286.0
YHH3_k127_11031798_6 Na+/H+ ion antiporter subunit K05562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000002422 244.0
YHH3_k127_11031798_7 Peptidyl-prolyl cis-trans isomerase K01802,K03772 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000002644 239.0
YHH3_k127_11031798_8 Protein of unknown function (DUF454) K09790 - - 0.000000000000000000000000000000000000000000000000000000000001614 213.0
YHH3_k127_11031798_9 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K05560 - - 0.00000000000000000000000000000000000000000000000000001785 189.0
YHH3_k127_11151530_0 Transposase DDE domain group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 461.0
YHH3_k127_11151530_1 DDE domain - - - 0.0000000000000000000000000000000009572 133.0
YHH3_k127_11151530_2 Superfamily II DNA RNA helicase, SNF2 family - - - 0.000000005707 57.0
YHH3_k127_11189186_0 THUMP K07444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001187 595.0
YHH3_k127_11189186_1 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003343 557.0
YHH3_k127_11189186_2 Tyrosine recombinase XerD K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007787 449.0
YHH3_k127_11189186_3 NAD(P)H-binding K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 441.0
YHH3_k127_11189186_4 MlaA lipoprotein K04754 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001444 362.0
YHH3_k127_11189186_5 MotA TolQ ExbB proton channel K03561 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009179 340.0
YHH3_k127_11189186_6 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000004512 235.0
YHH3_k127_11189186_7 Protein of unknown function (DUF423) - - - 0.000000000000000000000000000000000000000000000000000000000004017 209.0
YHH3_k127_11189186_8 PFAM Prenyltransferase squalene oxidase K06045 - 4.2.1.129,5.4.99.17 0.00000000000000000000000000003528 119.0
YHH3_k127_11189186_9 NAD(P)H-binding K00091 - 1.1.1.219 0.000007896 51.0
YHH3_k127_11204466_0 PFAM Restriction endonuclease, type I, EcoEI, R subunit Type III, Res subunit, C-terminal K01153 - 3.1.21.3 0.0 1406.0
YHH3_k127_11204466_1 Belongs to the IlvD Edd family K01687 - 4.2.1.9 3.345e-321 988.0
YHH3_k127_11204466_2 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002142 598.0
YHH3_k127_11204466_3 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005974 491.0
YHH3_k127_11204466_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013 495.0
YHH3_k127_11204466_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001133 249.0
YHH3_k127_11204466_6 HsdM N-terminal domain K03427 - 2.1.1.72 0.000000000000000000000000000000000000000000000000000000000000009326 216.0
YHH3_k127_11204466_7 PFAM Cytochrome c, class I K08738 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.0000000000000000000000000000000000001608 143.0
YHH3_k127_11204466_8 OsmC-like protein K07397 - - 0.000000000000000000004361 93.0
YHH3_k127_11204466_9 - - - - 0.000000000000002926 81.0
YHH3_k127_11234897_0 Cytidylyltransferase-like - - - 1.448e-245 767.0
YHH3_k127_11234897_1 PFAM aminotransferase, class I K14260 - 2.6.1.2,2.6.1.66 1.763e-242 753.0
YHH3_k127_11234897_2 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000000000000000000000000000000001251 224.0
YHH3_k127_11268773_0 TIGRFAM Acetolactate synthase, large subunit, biosynthetic K01652 - 2.2.1.6 0.0 1059.0
YHH3_k127_11268773_1 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 3.75e-286 890.0
YHH3_k127_11268773_2 Putative modulator of DNA gyrase K03568 - - 7.456e-229 717.0
YHH3_k127_11268773_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01501,K11206 - 3.5.5.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004776 452.0
YHH3_k127_11268773_4 TIGRFAM Acetolactate synthase, small subunit K01653 GO:0003674,GO:0003824,GO:0003984,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 2.2.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003076 287.0
YHH3_k127_11268773_5 Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell K00982 - 2.7.7.42,2.7.7.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000033 281.0
YHH3_k127_11268773_6 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000016 201.0
YHH3_k127_11268773_7 Belongs to the N-Me-Phe pilin family K02650 - - 0.000000000000000000000000000000000000000000005133 167.0
YHH3_k127_11288947_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 2.068e-281 867.0
YHH3_k127_11288947_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 2.703e-265 820.0
YHH3_k127_11288947_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003716 513.0
YHH3_k127_11288947_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0007745 42.0
YHH3_k127_11317862_0 ABC transporter K06147 - - 0.0 1191.0
YHH3_k127_11317862_1 Protein of unknown function (DUF3619) - - - 0.00000000000000000000000000000000000958 139.0
YHH3_k127_11317862_2 Protein of unknown function (DUF3106) - - - 0.0000000000000000000000000002434 118.0
YHH3_k127_11317862_3 PFAM RNA polymerase sigma factor 70, region 4 type 2 K03088 - - 0.000000000000000003463 84.0
YHH3_k127_11322130_0 tail collar domain protein - - - 0.000000000000000000000000000002984 135.0
YHH3_k127_11322130_1 Hep Hag repeat protein - - - 0.0002452 53.0
YHH3_k127_11364193_0 Methionine synthase K00548 - 2.1.1.13 0.0 2230.0
YHH3_k127_11364193_1 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 GO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576 6.3.4.14,6.4.1.2 3.136e-272 840.0
YHH3_k127_11364193_2 Ribosomal protein L11 methyltransferase K02687 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 432.0
YHH3_k127_11364193_3 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K07275,K16079 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007295 319.0
YHH3_k127_11364193_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000000000000000000000000801 232.0
YHH3_k127_11364193_5 zinc-ribbon domain - - - 0.000000000000000000000000000000000000000000000000000000000000000004079 235.0
YHH3_k127_11364193_6 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000000000000000000001493 221.0
YHH3_k127_11364193_8 Transposase zinc-ribbon domain - - - 0.000000000000001113 76.0
YHH3_k127_11471773_0 Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily K00121 - 1.1.1.1,1.1.1.284 8.197e-223 692.0
YHH3_k127_11471773_1 Serine hydrolase involved in the detoxification of formaldehyde K01070 - 3.1.2.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 444.0
YHH3_k127_11471773_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006791 420.0
YHH3_k127_11471773_3 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003925 416.0
YHH3_k127_11471773_4 TIGRFAM Methionine sulphoxide reductase B K07305 - 1.8.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008241 309.0
YHH3_k127_11471773_5 COG2199 FOG GGDEF domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000124 251.0
YHH3_k127_11471773_6 Domain of unknown function (DUF4440) - - - 0.000000000000000000000000000000000002938 141.0
YHH3_k127_11471773_7 Acetyltransferase (GNAT) domain - - - 0.00000000000008934 74.0
YHH3_k127_11471773_8 Acetyltransferase (GNAT) domain - - - 0.00000000002462 67.0
YHH3_k127_11508296_0 ABC transporter C-terminal domain K15738 - - 0.0 1011.0
YHH3_k127_11508296_1 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000000000000000000000000000000000000000000000000000000002045 237.0
YHH3_k127_11508296_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000002136 221.0
YHH3_k127_11508296_3 Peroxide stress protein YaaA K09861 - - 0.0000000000000000000000000000000000000000000000000000000017 202.0
YHH3_k127_11508296_4 - - - - 0.0000000000000000000000000000000000000000000000007712 179.0
YHH3_k127_1156049_0 TonB-dependent receptor, beta-barrel - - - 0.0 1260.0
YHH3_k127_1156049_1 'signal transduction protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 342.0
YHH3_k127_1156049_2 Belongs to the UPF0502 family K09915 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001528 288.0
YHH3_k127_1156049_3 - - - - 0.00000000000000000000000000000000000000000000006157 173.0
YHH3_k127_1156049_4 Tetratricopeptide repeat - - - 0.00000000000000001523 89.0
YHH3_k127_11597589_0 PFAM Peptidase S45, penicillin amidase K01434 - 3.5.1.11 0.0 1079.0
YHH3_k127_11597589_1 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 3.828e-298 920.0
YHH3_k127_11597589_2 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 9.858e-261 811.0
YHH3_k127_11597589_3 Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02401 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001563 513.0
YHH3_k127_11597589_4 Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin K02400 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 503.0
YHH3_k127_11597589_5 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000000008439 138.0
YHH3_k127_11597589_6 - - - - 0.0000000000000000000000000000000001437 142.0
YHH3_k127_11597589_7 Sensors of blue-light using FAD - - - 0.0000000000000003635 79.0
YHH3_k127_11597589_8 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000519 49.0
YHH3_k127_11648936_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00382,K00627 - 1.8.1.4,2.3.1.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 592.0
YHH3_k127_11648936_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000007079 261.0
YHH3_k127_11648936_2 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000000000000000000000004739 237.0
YHH3_k127_11648936_3 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000000000000000000000000000000001949 218.0
YHH3_k127_11648936_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.00000000000000000000000000000000000000001054 156.0
YHH3_k127_11654818_0 glycyl-tRNA aminoacylation K01879 - 6.1.1.14 5e-324 1005.0
YHH3_k127_11654818_1 Transfers the fatty acyl group on membrane lipoproteins K03820 - - 3.208e-234 733.0
YHH3_k127_11654818_10 Polynucleotide kinase 3 phosphatase K03273 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0034200,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914 3.1.3.82,3.1.3.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001302 274.0
YHH3_k127_11654818_11 general secretion pathway protein G K02456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001036 241.0
YHH3_k127_11654818_12 Phage lysozyme K01185 - 3.2.1.17 0.000000000000000000000000000000000000000000000000000000000000001305 222.0
YHH3_k127_11654818_13 - - - - 0.000000000000000000000000000000000000004668 149.0
YHH3_k127_11654818_14 - - - - 0.0000000000000000000000000000002689 128.0
YHH3_k127_11654818_15 Protein of unknown function (DUF3144) - - - 0.000000000000000000000005637 104.0
YHH3_k127_11654818_17 - - - - 0.0001134 46.0
YHH3_k127_11654818_2 Type II secretion system K02455 - - 7.095e-218 679.0
YHH3_k127_11654818_3 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009387 591.0
YHH3_k127_11654818_4 Glycyl-tRNA synthetase K01878 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009665 580.0
YHH3_k127_11654818_5 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 466.0
YHH3_k127_11654818_6 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001106 417.0
YHH3_k127_11654818_7 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003767 388.0
YHH3_k127_11654818_8 Cytochrome P460 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 286.0
YHH3_k127_11654818_9 Protein of unknown function DUF45 K07043 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004155 282.0
YHH3_k127_11667687_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1369.0
YHH3_k127_11667687_1 Metallo-peptidase family M12B Reprolysin-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002895 485.0
YHH3_k127_11667687_2 PFAM Peptidase M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002671 422.0
YHH3_k127_11667687_3 biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.000000000000001391 81.0
YHH3_k127_11701675_0 Belongs to the CarB family K01955 - 6.3.5.5 0.0 1911.0
YHH3_k127_11701675_1 Peptidyl-prolyl cis-trans isomerase K03770 - 5.2.1.8 3.987e-248 780.0
YHH3_k127_11701675_2 Belongs to the CarA family K01956 - 6.3.5.5 2.599e-206 646.0
YHH3_k127_11701675_3 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 316.0
YHH3_k127_11701675_4 Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit K02427 - 2.1.1.166 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008235 311.0
YHH3_k127_11701675_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008002 271.0
YHH3_k127_11701675_6 CRS1_YhbY K07574 - - 0.00000000000000000000000000000000000000372 149.0
YHH3_k127_11701675_7 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000003906 147.0
YHH3_k127_11701675_8 Predicted small integral membrane protein (DUF2165) - - - 0.00000000000000000002027 91.0
YHH3_k127_11701675_9 - - - - 0.000000000000005486 76.0
YHH3_k127_11741556_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0 1631.0
YHH3_k127_11741556_1 RNase H - - - 0.00000000000000000000000000000000000000000000002307 173.0
YHH3_k127_11741556_2 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 GO:0000166,GO:0003674,GO:0003824,GO:0004748,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005971,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0034654,GO:0036094,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990204 1.17.4.1 0.0000000000000000000000000000000000000000000283 166.0
YHH3_k127_11741556_3 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000000001569 161.0
YHH3_k127_11750291_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.0 1170.0
YHH3_k127_11750291_1 Metallo-beta-lactamase superfamily K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 505.0
YHH3_k127_11750291_2 3-5 exonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000005113 226.0
YHH3_k127_11750291_3 Required for maturation of 30S ribosomal subunits K09748 - - 0.0000000000008881 68.0
YHH3_k127_11766283_0 Carbon-nitrogen hydrolase - - - 9.395e-309 949.0
YHH3_k127_11766283_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000001046 252.0
YHH3_k127_11766283_2 PFAM FRG domain - - - 0.0000000000000000000000000000000000802 145.0
YHH3_k127_11766283_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease K02342 - 2.7.7.7 0.0000000000000003198 89.0
YHH3_k127_11817730_0 pdz dhr glgf - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195 549.0
YHH3_k127_11946040_0 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 2.416e-256 799.0
YHH3_k127_11946040_1 PFAM Cytochrome c, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 507.0
YHH3_k127_11946040_2 cytochrome - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002194 343.0
YHH3_k127_11946040_3 divalent ion tolerance protein K03926 GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914 - 0.00000000000000000000000000000000000000002556 154.0
YHH3_k127_11946040_4 - - - - 0.00000000000000000008562 90.0
YHH3_k127_11982927_0 TonB-dependent Receptor Plug Domain K02014 - - 0.0 1074.0
YHH3_k127_11982927_1 Regulator of K conductance, C-terminal - - - 1.006e-308 953.0
YHH3_k127_11982927_10 UPF0060 membrane protein K09771 - - 0.0000000000000000000000000000000000000000000000005954 177.0
YHH3_k127_11982927_11 Belongs to the GPAT DAPAT family - - - 0.00000223 53.0
YHH3_k127_11982927_2 Sodium:sulfate symporter transmembrane region - - - 9.467e-299 925.0
YHH3_k127_11982927_3 Phosphate-selective porin O and P K07221 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 565.0
YHH3_k127_11982927_4 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 553.0
YHH3_k127_11982927_5 TIGRFAM phosphate binding protein K02040 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004924 502.0
YHH3_k127_11982927_6 Glucose / Sorbosone dehydrogenase K21430 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005093 458.0
YHH3_k127_11982927_7 Mechanosensitive ion channel K05802,K22051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002058 402.0
YHH3_k127_11982927_8 Mut7-C ubiquitin K09122 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 346.0
YHH3_k127_11982927_9 Phosphate-selective porin O and P K07221 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004518 331.0
YHH3_k127_12032009_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 6.946e-243 756.0
YHH3_k127_12032009_1 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 - 4.1.2.13 1.156e-210 656.0
YHH3_k127_12032009_2 CHAD - - - 0.00000000000000000000000000000000000000000000000000000000000000002656 228.0
YHH3_k127_12032779_0 Tex-like protein N-terminal domain K06959 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 593.0
YHH3_k127_12032779_1 L,D-transpeptidase catalytic domain K16291 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008925 482.0
YHH3_k127_12032779_2 May be involved in recombination K03554 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004224 409.0
YHH3_k127_12032779_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 305.0
YHH3_k127_12032779_4 Diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 298.0
YHH3_k127_12032779_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001872 257.0
YHH3_k127_12032779_6 Putative prokaryotic signal transducing protein - - - 0.00000000000000000000000000000000000000000000000000002448 189.0
YHH3_k127_12032779_7 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000007494 115.0
YHH3_k127_12032779_8 Alanine-zipper, major outer membrane lipoprotein K06078 - - 0.00000000000000000000001525 102.0
YHH3_k127_12039603_0 Cation efflux family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006924 401.0
YHH3_k127_12039603_1 ADP binding K16247 - - 0.0000000000000000000000000000005967 126.0
YHH3_k127_12039603_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000000000000001189 104.0
YHH3_k127_12043992_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K15726 - - 0.0 1448.0
YHH3_k127_12043992_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 2.315e-242 757.0
YHH3_k127_12043992_10 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000000000000001716 132.0
YHH3_k127_12043992_11 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000000000000003801 113.0
YHH3_k127_12043992_12 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000001001 66.0
YHH3_k127_12043992_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K00646,K09458 GO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0016740,GO:0016746,GO:0016747,GO:0033817 2.3.1.179 5.001e-234 727.0
YHH3_k127_12043992_3 outer membrane efflux protein K15725 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 588.0
YHH3_k127_12043992_4 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 576.0
YHH3_k127_12043992_5 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002505 544.0
YHH3_k127_12043992_6 malonyl CoA-acyl carrier protein transacylase K00645,K13935,K15355 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 478.0
YHH3_k127_12043992_7 Short-chain dehydrogenase reductase SDR K00059 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0010130,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0018913,GO:0018915,GO:0022607,GO:0042537,GO:0043933,GO:0044085,GO:0044237,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 398.0
YHH3_k127_12043992_8 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002789 289.0
YHH3_k127_12043992_9 Uncharacterized ACR, COG1399 K07040 - - 0.00000000000000000000000000000000000000000000000001112 184.0
YHH3_k127_12111239_0 Multicopper oxidase type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007353 509.0
YHH3_k127_12111239_1 protein conserved in bacteria K09941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001747 261.0
YHH3_k127_12111239_3 - - - - 0.000001604 54.0
YHH3_k127_12111239_4 COG1943 Transposase and inactivated derivatives K07491 - - 0.00004721 48.0
YHH3_k127_12131542_0 PFAM Multicopper oxidase, type K04753,K08100,K14588 - 1.3.3.5 5.13e-277 859.0
YHH3_k127_12131542_1 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 313.0
YHH3_k127_12131542_2 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003931 290.0
YHH3_k127_12131542_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000183 211.0
YHH3_k127_12131542_4 Small metal-binding protein - - - 0.000000000000000000000000000000000000000000000000000001643 192.0
YHH3_k127_12190460_0 AMP-binding enzyme - - - 1.064e-304 961.0
YHH3_k127_12190460_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 481.0
YHH3_k127_12190460_2 Sodium:dicarboxylate symporter family K11102 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006171 323.0
YHH3_k127_12190460_3 - - - - 0.000000000000000000002265 100.0
YHH3_k127_12231593_0 'Superfamily II DNA RNA - - - 2.34e-211 694.0
YHH3_k127_12231593_1 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000154 338.0
YHH3_k127_12231593_2 Domain of unknown function (DUF4389) - - - 0.00000000000000000000000000000002158 129.0
YHH3_k127_12302453_0 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 472.0
YHH3_k127_12302453_1 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 - 2.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009667 289.0
YHH3_k127_12302453_2 Protein of unknown function (DUF3135) - - - 0.000000000000000000000000000006359 121.0
YHH3_k127_12302453_3 ThiS family K03154 - - 0.000000000000000000000000000009202 119.0
YHH3_k127_12334676_0 PFAM Aminoacyl-tRNA synthetase, class Ib K01867 - 6.1.1.2 1.209e-238 740.0
YHH3_k127_12334676_1 NnrS protein K07234 - - 1.056e-200 631.0
YHH3_k127_12334676_2 PFAM PHP C-terminal K07053 GO:0003674,GO:0003824,GO:0005488,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0030145,GO:0042578,GO:0043167,GO:0043169,GO:0044237,GO:0046872,GO:0046914,GO:0097657 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001592 464.0
YHH3_k127_12334676_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000305 385.0
YHH3_k127_12334676_4 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001116 369.0
YHH3_k127_12334676_5 Sua5 YciO YrdC YwlC family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003236 299.0
YHH3_k127_12334676_6 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.00000000000000000000000000000000000000000000000000000000000000000003681 237.0
YHH3_k127_1235999_0 Adenylyl- / guanylyl cyclase, catalytic domain - - - 1.324e-207 658.0
YHH3_k127_1235999_1 Belongs to the peptidase S11 family K01286,K07258 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 602.0
YHH3_k127_1235999_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 355.0
YHH3_k127_1235999_3 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003839 352.0
YHH3_k127_1235999_4 Nudix hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 320.0
YHH3_k127_1235999_5 PFAM Aminotransferase, class IV K00824 - 2.6.1.21 0.00000000000000000000000000000000000000000000000000000000000007718 215.0
YHH3_k127_1235999_6 Protein of unknown function (DUF2914) - - - 0.00000000000000000000000000000001591 137.0
YHH3_k127_12362496_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009175 604.0
YHH3_k127_12362496_1 transcriptional regulatory protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001436 416.0
YHH3_k127_12362496_2 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 296.0
YHH3_k127_12362496_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008284 277.0
YHH3_k127_12362496_4 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000401 238.0
YHH3_k127_12362496_5 - - - - 0.0000000000000000000000000000000000000000000000000009914 186.0
YHH3_k127_12486008_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family K03500 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360 2.1.1.176 4.908e-209 659.0
YHH3_k127_12486008_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001816 557.0
YHH3_k127_12486008_2 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002249 316.0
YHH3_k127_12486008_3 Protein of unknown function (DUF3108) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 302.0
YHH3_k127_1249083_0 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002968 451.0
YHH3_k127_1249083_1 Cytochrome c-type biogenesis protein CcmF K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002776 435.0
YHH3_k127_1249083_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004516 387.0
YHH3_k127_1249083_3 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 382.0
YHH3_k127_1249083_4 once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007408 302.0
YHH3_k127_1249083_5 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000000000000000000000000000000000000000001716 237.0
YHH3_k127_1249083_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000000000000000000000000000006176 205.0
YHH3_k127_1249083_7 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.000000000000000000000000000000000000000000000002217 173.0
YHH3_k127_1249083_8 Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes K02196 - - 0.000000000000005759 76.0
YHH3_k127_12501246_0 PFAM Major facilitator superfamily K08218 - - 4.185e-247 767.0
YHH3_k127_12501246_1 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 1.107e-219 683.0
YHH3_k127_12501246_2 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004068 450.0
YHH3_k127_12501246_3 PFAM Methionine biosynthesis MetW - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001164 353.0
YHH3_k127_12501246_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000002011 150.0
YHH3_k127_12528715_0 The M ring may be actively involved in energy transduction K02409 - - 2.033e-246 771.0
YHH3_k127_12528715_1 Signal transduction histidine kinase K10942 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 310.0
YHH3_k127_12528715_2 flagellar motor switch protein flig K02410 - - 0.00000000000000000000006194 101.0
YHH3_k127_12536603_0 Involved in initiation control of chromosome replication - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 397.0
YHH3_k127_12536603_1 bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding - - - 0.000000000000000000000000000000000000000000000001537 177.0
YHH3_k127_12536603_2 Belongs to the peptidase S8 family K12287 - - 0.0000000000000000000000000000000000004815 147.0
YHH3_k127_12593217_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 6.262e-199 623.0
YHH3_k127_12593217_1 Belongs to the dGTPase family. Type 2 subfamily K01129 - 3.1.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 594.0
YHH3_k127_12593217_2 Transcriptional regulatory protein, C terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009967 396.0
YHH3_k127_12593217_3 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 324.0
YHH3_k127_12593217_4 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001565 225.0
YHH3_k127_12721963_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.0 1202.0
YHH3_k127_12721963_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 2.097e-196 614.0
YHH3_k127_12721963_2 Belongs to the Nudix hydrolase family. NudJ subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000002849 230.0
YHH3_k127_12738552_0 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 1.311e-204 642.0
YHH3_k127_12738552_1 PFAM Squalene phytoene synthase K00801 - 2.5.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005563 568.0
YHH3_k127_12738552_2 Permease MlaE K02066 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 541.0
YHH3_k127_12738552_3 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 532.0
YHH3_k127_12738552_4 NmrA-like family K00091 - 1.1.1.219 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006482 464.0
YHH3_k127_12738552_5 AAA domain, putative AbiEii toxin, Type IV TA system K02065 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005811 372.0
YHH3_k127_12738552_6 MlaD protein K02067 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001872 312.0
YHH3_k127_12738552_7 atpase or kinase K06925 - - 0.0000000000000000000000000000000000000000000000000032 184.0
YHH3_k127_12738552_8 ABC-type transport auxiliary lipoprotein component K18480 - - 0.00000000000000000000000000000000000000000000000001544 187.0
YHH3_k127_12853751_0 fad dependent oxidoreductase K07137 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 438.0
YHH3_k127_12853751_1 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000000000000000000000009852 222.0
YHH3_k127_12892423_0 MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000189 375.0
YHH3_k127_12892423_1 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001098 293.0
YHH3_k127_12892423_2 Biopolymer transport protein ExbD TolR K03559 - - 0.00000000000000000000000000000000000000000000000000000000000000000002771 233.0
YHH3_k127_12892423_3 FecR protein K07165 - - 0.000000000000000000000000000000000000000000004278 169.0
YHH3_k127_12892423_4 transposition K07497 - - 0.0000000000000000000000000003061 114.0
YHH3_k127_12892423_5 - - - - 0.0000000002521 63.0
YHH3_k127_1304568_0 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 588.0
YHH3_k127_1304568_1 Phosphotransferase enzyme family K07102 - 2.7.1.221 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001118 529.0
YHH3_k127_1304568_2 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 452.0
YHH3_k127_1304568_3 Nucleotidyl transferase K00992 - 2.7.7.99 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 323.0
YHH3_k127_1304568_4 Membrane fusogenic activity K09806 - - 0.0000000000000000000000000000001096 127.0
YHH3_k127_1319243_0 COG0463 Glycosyltransferases involved in cell wall biogenesis - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 293.0
YHH3_k127_1319243_1 Acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003244 260.0
YHH3_k127_1319243_2 Thioesterase-like superfamily K07107 - - 0.000000000000000000000000000000000000000000000000003197 185.0
YHH3_k127_1384434_0 fatty acid desaturase K00507 - 1.14.19.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 449.0
YHH3_k127_1384434_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000328 269.0
YHH3_k127_1498828_0 SMART ATPase, AAA type, core - - - 6.224e-307 945.0
YHH3_k127_1498828_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 2.239e-298 923.0
YHH3_k127_1498828_10 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007842 441.0
YHH3_k127_1498828_11 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001185 382.0
YHH3_k127_1498828_12 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000243 376.0
YHH3_k127_1498828_13 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005243 351.0
YHH3_k127_1498828_14 Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage K08311 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000177 320.0
YHH3_k127_1498828_15 Transglycosylase SLT domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004568 269.0
YHH3_k127_1498828_16 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000007052 231.0
YHH3_k127_1498828_17 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000001446 160.0
YHH3_k127_1498828_18 RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs K03666 - - 0.0000000000000000000000000000000000000139 145.0
YHH3_k127_1498828_19 - - - - 0.00000000000000000000000000000000000004063 145.0
YHH3_k127_1498828_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 9.702e-298 917.0
YHH3_k127_1498828_20 Uncharacterized protein conserved in bacteria (DUF2065) K09937 - - 0.0000000000000000000000356 100.0
YHH3_k127_1498828_21 - - - - 0.000000000000761 73.0
YHH3_k127_1498828_3 Belongs to the glutamate synthase family - - - 2.582e-277 857.0
YHH3_k127_1498828_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 2.289e-252 781.0
YHH3_k127_1498828_5 HflC and HflK could encode or regulate a protease K04088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 592.0
YHH3_k127_1498828_6 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine K02502 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 588.0
YHH3_k127_1498828_7 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008471 573.0
YHH3_k127_1498828_8 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003606 554.0
YHH3_k127_1498828_9 HflC and HflK could regulate a protease K04087 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005695 486.0
YHH3_k127_1548667_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0000097,GO:0000166,GO:0001666,GO:0002376,GO:0002437,GO:0002439,GO:0002544,GO:0003674,GO:0003824,GO:0004013,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006152,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0007584,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009164,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016053,GO:0016054,GO:0016787,GO:0016801,GO:0016802,GO:0017076,GO:0017144,GO:0019439,GO:0019510,GO:0019752,GO:0030554,GO:0031667,GO:0033353,GO:0034641,GO:0034655,GO:0034656,GO:0036094,GO:0036293,GO:0042219,GO:0042221,GO:0042278,GO:0042454,GO:0042745,GO:0042802,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046130,GO:0046394,GO:0046395,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046700,GO:0048037,GO:0048511,GO:0048512,GO:0050662,GO:0050667,GO:0050896,GO:0051186,GO:0051187,GO:0051287,GO:0055086,GO:0070482,GO:0071268,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:0097458,GO:0098604,GO:0120025,GO:1901135,GO:1901136,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901657,GO:1901658 3.3.1.1 1.133e-278 859.0
YHH3_k127_1548667_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0000096,GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006556,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009069,GO:0009108,GO:0009116,GO:0009119,GO:0009987,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0030554,GO:0030955,GO:0031420,GO:0032553,GO:0032555,GO:0032559,GO:0033353,GO:0034641,GO:0035639,GO:0036094,GO:0042278,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0046872,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901605,GO:1901657 2.5.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001163 560.0
YHH3_k127_1548667_2 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006892 437.0
YHH3_k127_1548667_3 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004371 406.0
YHH3_k127_1548667_4 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 349.0
YHH3_k127_1548667_5 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 283.0
YHH3_k127_1548667_6 Protein of unknown function, DUF484 K09921 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001289 259.0
YHH3_k127_1548667_7 FR47-like protein - - - 0.00000000000000000000000000000000000000000000000000000001879 201.0
YHH3_k127_1563699_0 Sigma-54 interaction domain - - - 4.422e-229 714.0
YHH3_k127_1563699_1 Signal transduction histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007685 591.0
YHH3_k127_1563699_2 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222 417.0
YHH3_k127_1565475_0 alpha beta alpha domain I K01835,K01840,K15778 GO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0004614,GO:0004615,GO:0005488,GO:0005975,GO:0005976,GO:0006082,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009243,GO:0009244,GO:0009311,GO:0009312,GO:0009405,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0017144,GO:0019752,GO:0033692,GO:0034637,GO:0034645,GO:0042120,GO:0042121,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044419,GO:0046394,GO:0046401,GO:0046402,GO:0046872,GO:0051704,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.4.2.2,5.4.2.8 1.678e-245 764.0
YHH3_k127_1565475_1 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002795 575.0
YHH3_k127_1565475_2 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125 336.0
YHH3_k127_1565475_3 Lysin motif K08307 - - 0.00000000000000000000000000000000000000000000000000000000000000000004803 242.0
YHH3_k127_1565475_4 Zinc-finger domain - - - 0.0000000000000000000000000000000000581 133.0
YHH3_k127_1565475_5 COG1388 FOG LysM repeat K19223,K19224 - - 0.0007574 51.0
YHH3_k127_1620589_0 PFAM CagE, TrbE, VirB component of type IV transporter system K20530 - - 3.724e-240 746.0
YHH3_k127_1620589_1 conjugation TrbI family protein K20533 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002771 511.0
YHH3_k127_1620589_2 Conjugal transfer protein K20532 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 448.0
YHH3_k127_1620589_3 VirB8 protein K20531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 363.0
YHH3_k127_1620589_4 TRANSFER protein K20266 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001922 304.0
YHH3_k127_1620589_5 PFAM TrbL VirB6 plasmid conjugal transfer protein K07344 - - 0.00000000000000000000000000000000242 130.0
YHH3_k127_1620589_6 Conjugal transfer protein TrbH - - - 0.00000000000000000000000008083 112.0
YHH3_k127_1674380_0 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 580.0
YHH3_k127_1674380_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 458.0
YHH3_k127_1674380_2 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000304 435.0
YHH3_k127_1674380_3 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001384 319.0
YHH3_k127_1674380_4 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 - 3.1.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001396 312.0
YHH3_k127_1674380_5 Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein K02494 - - 0.0000000000000000000000000000000000000000000000000000000000000000002752 236.0
YHH3_k127_1674380_6 Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell K03608 - - 0.000000000000000000000000000000000000000000106 160.0
YHH3_k127_1674380_7 Belongs to the ParA family K03609 - - 0.0000000000000000000000000000000000004395 140.0
YHH3_k127_1743242_0 Protein of unknown function (DUF3485) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001542 611.0
YHH3_k127_1743242_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 515.0
YHH3_k127_1743242_2 FemAB family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 355.0
YHH3_k127_1743242_3 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000009423 261.0
YHH3_k127_1756916_0 PFAM Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase K13924 - 2.1.1.80,3.1.1.61 0.0 1287.0
YHH3_k127_1756916_1 Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate K08289 - 2.1.2.2 1.627e-203 639.0
YHH3_k127_1756916_2 Belongs to the glucose-6-phosphate 1-epimerase family K01792 - 5.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 477.0
YHH3_k127_1756916_3 Histidine kinase K07675 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 398.0
YHH3_k127_1756916_4 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000004661 132.0
YHH3_k127_1756916_5 transposition K07497 - - 0.00000000000006798 72.0
YHH3_k127_1756916_6 PFAM Integrase catalytic region K07497 - - 0.0000001186 53.0
YHH3_k127_1756916_7 Integrase core domain K07497 - - 0.0000017 50.0
YHH3_k127_1756916_8 PFAM integrase K07497 - - 0.00007437 47.0
YHH3_k127_1757164_0 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 604.0
YHH3_k127_1757164_1 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 571.0
YHH3_k127_1757164_2 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003492 550.0
YHH3_k127_1757164_3 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131 319.0
YHH3_k127_1757164_4 Protein of unknown function (DUF1624) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001201 260.0
YHH3_k127_1757164_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.0000000000000000000000000000000000000000000000000001111 186.0
YHH3_k127_1757164_6 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.0000000000000000000000000000000000000000000512 160.0
YHH3_k127_1830014_0 Belongs to the acetyltransferase family. ArgA subfamily K14682 - 2.3.1.1 6.913e-194 614.0
YHH3_k127_1830014_1 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 287.0
YHH3_k127_1830014_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.00000000000000000000000000000000000000000000005239 169.0
YHH3_k127_1834578_0 lysine 2,3-aminomutase K01843 - 5.4.3.2 1.474e-236 738.0
YHH3_k127_1834578_1 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003406 589.0
YHH3_k127_1834578_2 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 497.0
YHH3_k127_1834578_3 Nucleoside 2-deoxyribosyltransferase YtoQ - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001498 278.0
YHH3_k127_1834578_4 Redoxin K03564 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000001228 247.0
YHH3_k127_1834578_5 - - - - 0.00000000000000000000000000000000000000000000000000001773 190.0
YHH3_k127_1834578_6 - - - - 0.000000000000000000000000000000000000000001746 162.0
YHH3_k127_1894222_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 3.641e-218 681.0
YHH3_k127_1894222_1 PFAM peptidase - - - 3.099e-201 634.0
YHH3_k127_1894222_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 538.0
YHH3_k127_1894222_3 Putative aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005708 512.0
YHH3_k127_1894222_4 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 379.0
YHH3_k127_1894222_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000004446 233.0
YHH3_k127_1894222_6 Required for insertion of 4Fe-4S clusters K15724 - - 0.0000000000000000000000000000000000000000000000000000000023 201.0
YHH3_k127_1894222_7 Polymer-forming cytoskeletal - - - 0.0000000000000000000000000000000000000000000000000000001302 197.0
YHH3_k127_1934000_0 Belongs to the ClpA ClpB family K03694 - - 0.0 1293.0
YHH3_k127_1934000_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 3.56e-246 763.0
YHH3_k127_1934000_2 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002854 586.0
YHH3_k127_1934000_3 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008557 504.0
YHH3_k127_1934000_4 Signal transduction histidine kinase K15011 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001726 360.0
YHH3_k127_1934000_5 Response regulator receiver K15012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001743 312.0
YHH3_k127_1934000_6 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 284.0
YHH3_k127_1934000_7 Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation K06891 - - 0.00000000000000000000000000000000000000005581 154.0
YHH3_k127_1934000_8 PFAM Cold-shock protein, DNA-binding K03704 - - 0.0000000000000000000000000000000000001565 141.0
YHH3_k127_1987087_0 Aldo/keto reductase family K06221 - 1.1.1.346 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004034 456.0
YHH3_k127_1987087_1 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000007859 201.0
YHH3_k127_1987087_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K03601,K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1,3.1.11.6 0.0000000000000000000003463 95.0
YHH3_k127_1987087_3 Sodium/hydrogen exchanger family - - - 0.00000000009533 63.0
YHH3_k127_2125864_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 0.0 1215.0
YHH3_k127_2125864_1 Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol K06131 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 543.0
YHH3_k127_2125864_2 PFAM Endonuclease exonuclease phosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 407.0
YHH3_k127_2125864_3 2-deoxycytidine 5-triphosphate deaminase K01494 - 3.5.4.13 0.0000000005948 63.0
YHH3_k127_2306278_0 Capsule biosynthesis CapC K22116 - - 2.059e-227 742.0
YHH3_k127_2306278_2 Chase2 domain K01768,K07315 - 3.1.3.3,4.6.1.1 0.000000000000000000000004662 114.0
YHH3_k127_2393826_0 Protein of unknown function (DUF692) K09930 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004665 478.0
YHH3_k127_2393826_1 - - - - 0.00000000000000000000000000000002804 129.0
YHH3_k127_2393826_2 - - - - 0.0000000000000000000000000000001248 132.0
YHH3_k127_2393826_3 Putative DNA-binding domain K09929 - - 0.00000000000000001023 84.0
YHH3_k127_2393826_4 Transposase family tnp2 - - - 0.0003688 44.0
YHH3_k127_2397507_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 2.541e-204 639.0
YHH3_k127_2397507_1 NeuB family K03856 - 2.5.1.54 5.414e-201 628.0
YHH3_k127_2397507_2 Prephenate dehydrogenase K04517 - 1.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 425.0
YHH3_k127_2421484_0 PFAM Sulfate transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 437.0
YHH3_k127_2421484_1 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 - 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 309.0
YHH3_k127_2421484_2 PFAM transposase, IS4 family protein - - - 0.00000000000001111 79.0
YHH3_k127_2429480_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 446.0
YHH3_k127_2429480_1 Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004867 445.0
YHH3_k127_2429480_2 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226 355.0
YHH3_k127_2429480_3 Ankyrin repeat K06867 - - 0.0000000000000000000000000000000000000000000000000000000000001666 218.0
YHH3_k127_2429480_4 synthase K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000000000000000000000000000000007799 171.0
YHH3_k127_2433241_0 Protein of unknown function (DUF3422) - - - 2.308e-204 644.0
YHH3_k127_2433241_1 Serine dehydratase beta chain K01752 - 4.3.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003 574.0
YHH3_k127_2433241_2 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 304.0
YHH3_k127_2433241_3 Predicted metal-binding integral membrane protein (DUF2182) - - - 0.0000000000000000000000000000000000000000001773 159.0
YHH3_k127_2516296_0 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 402.0
YHH3_k127_2516296_1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K04764 - - 0.000000000000000000000000000000000000000000000000000000355 194.0
YHH3_k127_2516296_2 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 0.000000000000000000000000000000000000000000001009 168.0
YHH3_k127_2516296_3 helix_turn_helix, mercury resistance - - - 0.000000000000000000000000000000000000000000001331 168.0
YHH3_k127_2516296_4 Belongs to the 'phage' integrase family - - - 0.0000114 47.0
YHH3_k127_2533791_0 Type II/IV secretion system protein K02283,K20527 - - 1.281e-217 683.0
YHH3_k127_2533791_1 Type II secretion system (T2SS), protein F K12510 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009224 385.0
YHH3_k127_2533791_2 response regulator K02282 - - 0.0000000000000000000000000000000000002832 143.0
YHH3_k127_2595959_0 DAHP synthetase I family K03856 - 2.5.1.54 2.427e-215 671.0
YHH3_k127_2595959_1 AI-2E family transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005631 557.0
YHH3_k127_2595959_10 TIR domain - - - 0.000004884 52.0
YHH3_k127_2595959_2 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009392 553.0
YHH3_k127_2595959_3 TIGRFAM HAD-superfamily hydrolase, subfamily IB (PSPase-like) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002887 391.0
YHH3_k127_2595959_4 Belongs to the DnaA family K10763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001142 314.0
YHH3_k127_2595959_5 TIR domain - - - 0.000000000000000000000000000000000000000000000000000000008059 202.0
YHH3_k127_2595959_6 - - - - 0.000000000000000000000000000000000000000000000000003277 183.0
YHH3_k127_2595959_7 trisaccharide binding K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000006796 167.0
YHH3_k127_2595959_8 - - - - 0.0000000000000000000000000000000000003485 144.0
YHH3_k127_2595959_9 TIR domain - - - 0.00000000000008062 73.0
YHH3_k127_2610247_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 5.894e-232 721.0
YHH3_k127_2610247_1 synthetase, class II (G H P K01892 - 6.1.1.21 8.15e-222 692.0
YHH3_k127_2610247_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 609.0
YHH3_k127_2610247_3 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 361.0
YHH3_k127_2610247_4 Protein of unknown function (DUF3025) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006058 332.0
YHH3_k127_2610247_5 TIGRFAM Pilus biogenesis stability type IV, PilW K02656 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003043 313.0
YHH3_k127_2610247_6 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000000000000005561 250.0
YHH3_k127_2610247_7 Domain of unknown function (DUF4115) K15539 - - 0.00000000000000000000000000000000000000000000000000000000001123 219.0
YHH3_k127_2610247_8 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000354 147.0
YHH3_k127_2675845_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1517.0
YHH3_k127_2675845_1 COG0457 FOG TPR repeat - - - 3.149e-202 644.0
YHH3_k127_2675845_2 Peptidase family M23 K08259 - 3.4.24.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006763 410.0
YHH3_k127_2675845_3 Protein of unknown function (DUF721) - - - 0.00000000000000000000000000025 119.0
YHH3_k127_2781118_0 Inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 466.0
YHH3_k127_2781118_1 Protein of unknown function (DUF502) - - - 0.00000000000000000000000000000000000000000000000000000009328 201.0
YHH3_k127_2781118_2 - - - - 0.00000000000000000001024 94.0
YHH3_k127_2801294_0 'signal transduction protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 395.0
YHH3_k127_2801294_1 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001078 247.0
YHH3_k127_2801294_2 Membrane - - - 0.00000000000000000000000000000000001357 142.0
YHH3_k127_2801294_3 Phosphopantetheine attachment site K02078 - - 0.0000000000000000000000000005751 115.0
YHH3_k127_2801294_4 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000002958 110.0
YHH3_k127_2801294_5 Beta-ketoacyl synthase, N-terminal domain - - - 0.0000000000000000000000002026 115.0
YHH3_k127_2801294_6 diguanylate cyclase - - - 0.00000000000000000615 87.0
YHH3_k127_2810619_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903,K14067 - 6.2.1.5,6.2.1.9 2.171e-221 690.0
YHH3_k127_2810619_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006207 590.0
YHH3_k127_2810619_10 Domain of unknown function DUF21 - - - 0.0000001453 53.0
YHH3_k127_2810619_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 - 6.2.1.5,6.2.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 542.0
YHH3_k127_2810619_3 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007582 445.0
YHH3_k127_2810619_4 Lumazine binding domain K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002824 275.0
YHH3_k127_2810619_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000001701 247.0
YHH3_k127_2810619_6 Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG) K01095 - 3.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000392 233.0
YHH3_k127_2810619_7 Belongs to the CinA family K03743 - 3.5.1.42 0.00000000000000000000000000000000000000000000000000000000000891 211.0
YHH3_k127_2810619_8 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000000000000000000000000000000000001403 210.0
YHH3_k127_2810619_9 Belongs to the HpcH HpaI aldolase family K01644,K08691 - 4.1.3.24,4.1.3.25,4.1.3.34 0.00000000000000000000000000000000000000000000000000000000001668 209.0
YHH3_k127_2839673_0 Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis K03688 - - 1.669e-278 861.0
YHH3_k127_2839673_1 Amino acid permease - - - 1.567e-248 775.0
YHH3_k127_2839673_2 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor K07675 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004112 427.0
YHH3_k127_2839673_3 hydrolase of the alpha beta superfamily K07018 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009223 279.0
YHH3_k127_2839673_4 protein conserved in bacteria K03690 - - 0.000000000000000000000000000000000000000000000000000000000003561 214.0
YHH3_k127_2839673_5 Ferredoxin - - - 0.0000000000000000000000000000000000000000000000000002145 185.0
YHH3_k127_2839673_6 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000009549 176.0
YHH3_k127_2839673_7 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000008727 169.0
YHH3_k127_2855695_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 1.048e-219 686.0
YHH3_k127_2855695_1 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 338.0
YHH3_k127_2855695_2 Scaffold protein Nfu/NifU N terminal - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 325.0
YHH3_k127_2855695_3 NifU-like N terminal domain K04488 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002689 252.0
YHH3_k127_2855695_4 Uncharacterized protein conserved in bacteria (DUF2331) - - - 0.0000000000000000000000000000000000000000000000000003205 187.0
YHH3_k127_2855695_5 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000001367 141.0
YHH3_k127_2872936_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000896 316.0
YHH3_k127_2872936_1 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006849 313.0
YHH3_k127_2872936_2 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control K05788 - - 0.00000000000000000000000000000000000000000000000002462 179.0
YHH3_k127_2872936_3 PFAM Integrase, catalytic core K07497 - - 0.0000000000001051 72.0
YHH3_k127_2872936_4 chaperone-mediated protein folding - - - 0.000000000006362 68.0
YHH3_k127_2872936_5 Tetratricopeptide repeat - - - 0.0000000002485 67.0
YHH3_k127_2872936_6 Lipopolysaccharide assembly protein A domain K08992 - - 0.000000001309 62.0
YHH3_k127_2872936_7 Tetratricopeptide TPR_2 repeat protein - - - 0.00002815 49.0
YHH3_k127_2885122_0 - K03406 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 316.0
YHH3_k127_2885122_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001051 263.0
YHH3_k127_2885122_2 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - - - 0.00000000000000000000000000000000000000000000000000000000000000005722 233.0
YHH3_k127_2972314_0 phosphoenolpyruvate carboxykinase (diphosphate) activity K20370 - 4.1.1.38 0.0 1747.0
YHH3_k127_2972314_1 Trypsin K04771 - 3.4.21.107 7.191e-247 769.0
YHH3_k127_2972314_10 ribosomal large subunit export from nucleus - - - 0.00000000000000000000000000000000000000005534 156.0
YHH3_k127_2972314_11 Cytochrome c - - - 0.00000000000000000000000004027 111.0
YHH3_k127_2972314_12 Lytic transglycosylase catalytic - - - 0.00005127 46.0
YHH3_k127_2972314_2 Radical SAM superfamily K04069 - 1.97.1.4 1.172e-214 669.0
YHH3_k127_2972314_3 PFAM Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004954 581.0
YHH3_k127_2972314_4 Protein involved in meta-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004585 500.0
YHH3_k127_2972314_5 phosphoribosyltransferase K07100 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 329.0
YHH3_k127_2972314_6 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003979 282.0
YHH3_k127_2972314_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000014 268.0
YHH3_k127_2972314_8 Belongs to the ompA family K03286 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003765 253.0
YHH3_k127_2972314_9 Hsp20/alpha crystallin family K13993 - - 0.0000000000000000000000000000000000000000000000000000000000000000007371 231.0
YHH3_k127_3075581_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 0.0 1119.0
YHH3_k127_3075581_1 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 - 6.1.1.20 1.428e-261 820.0
YHH3_k127_3075581_2 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003475 607.0
YHH3_k127_3075581_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005731 301.0
YHH3_k127_3075581_4 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000000000000000000000000000001922 218.0
YHH3_k127_3075581_5 - - - - 0.000000000000000000000000000000000000000000000000000000000003049 208.0
YHH3_k127_3075581_6 Belongs to the bacterial ribosomal protein bL35 family K02916 - - 0.000000000000000000000000133 106.0
YHH3_k127_3140818_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002145 406.0
YHH3_k127_3140818_1 MlaC protein K07323 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001177 291.0
YHH3_k127_3140818_2 MlaD protein K02067 - - 0.00000000000000000000000000000000000001086 145.0
YHH3_k127_3140818_3 transporter antisigma-factor antagonist STAS K07122 - - 0.000000000000000000002762 96.0
YHH3_k127_3279738_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 3.591e-256 793.0
YHH3_k127_3279738_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002069 507.0
YHH3_k127_3279738_2 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002759 319.0
YHH3_k127_3281560_0 CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette K15342 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003027 562.0
YHH3_k127_3281560_1 Virulence protein RhuM family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 511.0
YHH3_k127_3281560_2 CRISPR-associated protein Cas7 K19118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 471.0
YHH3_k127_3281560_3 Domain of unknown function DUF83 K07464 - 3.1.12.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 290.0
YHH3_k127_3281560_4 CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette K09951 - - 0.0000000000000000000000000000000000000000004332 159.0
YHH3_k127_3351174_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 2.653e-233 738.0
YHH3_k127_3351174_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000000000000002271 129.0
YHH3_k127_3351174_2 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.00000000000000000000000000008655 119.0
YHH3_k127_3356508_0 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 3.002e-244 756.0
YHH3_k127_3356508_1 Belongs to the MurCDEF family K01924 - 6.3.2.8 2.173e-239 746.0
YHH3_k127_3356508_2 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 2.953e-221 694.0
YHH3_k127_3356508_3 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 6.093e-205 642.0
YHH3_k127_3356508_4 Peptidoglycan polymerase that is essential for cell division K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 574.0
YHH3_k127_3356508_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004383 534.0
YHH3_k127_3356508_6 Cell wall formation K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 486.0
YHH3_k127_3356508_7 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 418.0
YHH3_k127_3356508_8 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly K03589 - - 0.000000000000000000000000000000000001045 149.0
YHH3_k127_3502002_0 intramolecular transferase activity, transferring amino groups K01845 - 5.4.3.8 4.296e-235 733.0
YHH3_k127_3502002_1 Methionine aminopeptidase K01265 GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0070084,GO:0071704,GO:0140096,GO:1901564 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 494.0
YHH3_k127_3502002_10 - - - - 0.00000000000000000000000000000002863 126.0
YHH3_k127_3502002_11 Sulfate permease family - - - 0.0000000000000000000021 96.0
YHH3_k127_3502002_12 Sulfate permease family - - - 0.0000000006814 60.0
YHH3_k127_3502002_2 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989 - 2.7.7.56 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007379 379.0
YHH3_k127_3502002_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 312.0
YHH3_k127_3502002_4 PFAM heat shock protein DnaJ K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 305.0
YHH3_k127_3502002_5 Cytochrome c, class I - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001954 257.0
YHH3_k127_3502002_6 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000005807 236.0
YHH3_k127_3502002_7 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000000811 211.0
YHH3_k127_3502002_8 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.00000000000000000000000000000000001431 136.0
YHH3_k127_3502002_9 PFAM Sporulation domain protein - - - 0.000000000000000000000000000000002811 136.0
YHH3_k127_3570026_0 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 6.811e-270 835.0
YHH3_k127_3570026_1 TrkA-N domain protein K03499 - - 8.638e-247 768.0
YHH3_k127_3570026_2 Inositol monophosphatase K01082,K01092 - 3.1.3.25,3.1.3.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001713 423.0
YHH3_k127_3570026_3 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009263 347.0
YHH3_k127_3570026_4 Response regulator receiver K02657 - - 0.0000000000000000000000000000000000000000000000000000000000001966 213.0
YHH3_k127_3676394_0 glutamate--cysteine ligase - - - 3.042e-211 665.0
YHH3_k127_3676394_1 Signal transduction histidine kinase, phosphotransfer (Hpt) - - - 2.207e-201 641.0
YHH3_k127_3676394_2 Sugar-transfer associated ATP-grasp - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000442 551.0
YHH3_k127_3676394_3 PFAM Succinylglutamate desuccinylase Aspartoacylase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 513.0
YHH3_k127_3676394_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000000000000000000000001846 227.0
YHH3_k127_3676394_5 Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000001277 176.0
YHH3_k127_3676394_6 7 transmembrane helices usually fused to an inactive transglutaminase - - - 0.00000003873 55.0
YHH3_k127_3682722_0 PFAM glycosyl transferase, family 51 K05366 - 2.4.1.129,3.4.16.4 0.0 1195.0
YHH3_k127_3682722_1 Belongs to the GSP D family K02666 - - 2.637e-286 893.0
YHH3_k127_3682722_2 TIGRFAM type IV pilus assembly protein PilM K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006102 569.0
YHH3_k127_3682722_3 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 331.0
YHH3_k127_3682722_4 PFAM Fimbrial assembly K02663 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 288.0
YHH3_k127_3682722_5 Pilus assembly protein, PilO K02664 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 284.0
YHH3_k127_3682722_6 Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide K03216 - 2.1.1.207 0.00000000000000000000000000000000000000000000000000000000000000000000000004012 252.0
YHH3_k127_3682722_7 PFAM Pilus assembly protein K02665 - - 0.000000000000000000000000000000000000000000000000000000000001028 213.0
YHH3_k127_3682722_8 Glycosyl transferase family 21 - - - 0.0000000000000000000000001098 112.0
YHH3_k127_3755211_0 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 0.0 1146.0
YHH3_k127_3755211_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 6.144e-271 834.0
YHH3_k127_3755211_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 1.168e-267 824.0
YHH3_k127_3755211_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 3.396e-201 630.0
YHH3_k127_3755211_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 332.0
YHH3_k127_3755211_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 306.0
YHH3_k127_3755211_6 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003968 286.0
YHH3_k127_3755211_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000001976 218.0
YHH3_k127_3761740_0 Polysaccharide biosynthesis protein K02473,K08679 - 5.1.3.6,5.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 580.0
YHH3_k127_3761740_1 Tellurite resistance protein TerB K05801 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008388 392.0
YHH3_k127_3761740_2 UDP binding domain K02474 - - 0.0000000000000000000000000000000000000000000000000000000001405 205.0
YHH3_k127_3761740_3 Glutathione S-transferase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000002834 199.0
YHH3_k127_3790876_0 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001502 591.0
YHH3_k127_3790876_1 Plasmid pRiA4b ORF-3-like protein - - - 0.0000000000000000000000000000000000000000000000000000005165 198.0
YHH3_k127_3790876_2 PFAM Cytochrome c, class I - - - 0.000000000000000000000000000002299 121.0
YHH3_k127_3836664_0 AcrB/AcrD/AcrF family K03296,K18138 - - 0.0 1660.0
YHH3_k127_3836664_1 PFAM Multicopper oxidase, type - - - 3.1e-299 925.0
YHH3_k127_3836664_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585,K18094 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 454.0
YHH3_k127_3836664_3 PFAM multicopper oxidase type 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 359.0
YHH3_k127_3836664_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009019 291.0
YHH3_k127_3836664_5 FlgN protein K02399 - - 0.0000000000000000000000000000005833 127.0
YHH3_k127_3836664_6 PFAM Anti-sigma-28 factor, FlgM K02398 - - 0.0000000000000000000000000009582 115.0
YHH3_k127_3860395_0 fatty acid desaturase K00507 - 1.14.19.1 7.409e-223 694.0
YHH3_k127_3860395_1 AFG1-like ATPase K06916 - - 8.821e-201 631.0
YHH3_k127_3860395_10 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.000000000000000000000000000000000000001001 148.0
YHH3_k127_3860395_11 Belongs to the UPF0235 family K09131 - - 0.0000000000000000000000000000000000001316 144.0
YHH3_k127_3860395_12 - - - - 0.0000000000000000000000000000000001761 137.0
YHH3_k127_3860395_13 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000000001976 99.0
YHH3_k127_3860395_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 581.0
YHH3_k127_3860395_3 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009334 364.0
YHH3_k127_3860395_4 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004212 313.0
YHH3_k127_3860395_5 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004808 301.0
YHH3_k127_3860395_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000004622 260.0
YHH3_k127_3860395_7 YGGT family K02221 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001971 251.0
YHH3_k127_3860395_8 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000000000000000000000008529 172.0
YHH3_k127_3860395_9 Phosphoglycerate mutase family K08296 - - 0.000000000000000000000000000000000000000000000139 172.0
YHH3_k127_3887512_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 6.939e-243 756.0
YHH3_k127_3887512_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K17713 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 518.0
YHH3_k127_3887512_2 Tetratricopeptide repeat-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001528 261.0
YHH3_k127_3887512_3 PFAM Transposase, IS4-like K07481 - - 0.0000000000000000000000000000000000000001378 154.0
YHH3_k127_3889959_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 2.389e-201 633.0
YHH3_k127_3889959_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008579 557.0
YHH3_k127_3889959_2 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007673 460.0
YHH3_k127_3889959_3 Methyltransferase FkbM domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006466 415.0
YHH3_k127_3889959_4 Belongs to the sulfur carrier protein TusA family K04085 - - 0.0000000000000000000000000000009855 125.0
YHH3_k127_390938_0 signal recognition particle SRP54 K02404 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 554.0
YHH3_k127_390938_1 Belongs to the ParA family K04562 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 353.0
YHH3_k127_3922181_0 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 427.0
YHH3_k127_3922181_1 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 - 3.1.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 396.0
YHH3_k127_3922181_2 Tetrapyrrole (Corrin/Porphyrin) Methylases K07056 - 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001014 342.0
YHH3_k127_3922181_3 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000004644 249.0
YHH3_k127_3922181_4 ApaG domain K06195 - - 0.000000000000000000000000000000000000000000000000000000000004211 209.0
YHH3_k127_3922181_5 PFAM Rubredoxin-type Fe(Cys)4 protein - - - 0.0000000000000000000000000000000000007249 139.0
YHH3_k127_3922181_6 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000001651 112.0
YHH3_k127_3942012_0 FAD linked oxidases, C-terminal domain K00102,K00104,K03777 - 1.1.2.4,1.1.3.15,1.1.5.12 1.779e-286 883.0
YHH3_k127_3942012_1 PFAM CBS domain containing protein - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 1.003e-234 730.0
YHH3_k127_3942012_2 modulator of DNA gyrase K03592 - - 1.622e-227 711.0
YHH3_k127_3942012_3 4Fe-4S double cluster binding domain K11473 - - 1.094e-214 671.0
YHH3_k127_3942012_4 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 523.0
YHH3_k127_3942012_5 FAD linked oxidase K00104,K11472 - 1.1.3.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002425 513.0
YHH3_k127_3942012_6 PFAM 6-phosphogluconate dehydrogenase, NAD-binding K00042 - 1.1.1.60 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002838 459.0
YHH3_k127_3942012_7 Tripartite ATP-independent periplasmic transporters, DctQ component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001112 281.0
YHH3_k127_3942012_8 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000001421 221.0
YHH3_k127_3942012_9 Belongs to the UPF0307 family K09889 - - 0.000000000000000000000000000000000000000000000000000000000000193 216.0
YHH3_k127_3991653_0 Glutaminyl-tRNA synthetase K01886 - 6.1.1.18 0.0 1034.0
YHH3_k127_3991653_1 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009859 566.0
YHH3_k127_3991653_2 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000009331 275.0
YHH3_k127_3991653_3 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.00000000000000000000000000000000000000000000000000000000000000000007978 231.0
YHH3_k127_3991653_4 sodium:proton antiporter activity K03316 - - 0.000000002554 60.0
YHH3_k127_3995321_0 Selenide, water dikinase K01008 - 2.7.9.3 0.0 1043.0
YHH3_k127_3995321_1 COG3221 ABC-type phosphate phosphonate transport system, periplasmic component K02044 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005828 394.0
YHH3_k127_3995321_2 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002014 274.0
YHH3_k127_3995321_3 ATPases associated with a variety of cellular activities K02041 - 3.6.3.28 0.000000000000000000000000000000000000000000000000000003502 199.0
YHH3_k127_4008005_0 ABC-type uncharacterized transport system - - - 6.159e-199 628.0
YHH3_k127_4008005_1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009556 375.0
YHH3_k127_4008005_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001571 370.0
YHH3_k127_4008005_3 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 357.0
YHH3_k127_4008005_4 Belongs to the ompA family K03286 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001467 256.0
YHH3_k127_4008005_5 Domain of unknown function (DUF4340) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008449 252.0
YHH3_k127_4008005_6 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.0000000003779 60.0
YHH3_k127_4008651_0 O-acetylhomoserine sulfhydrylase K01740 - 2.5.1.49 3.768e-236 735.0
YHH3_k127_4008651_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 2.572e-235 739.0
YHH3_k127_4008651_10 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000000000000000000000000000003597 182.0
YHH3_k127_4008651_11 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.000000000000000000000000000000000000001509 150.0
YHH3_k127_4008651_12 transposase activity - - - 0.00000000001794 66.0
YHH3_k127_4008651_2 RNase_H superfamily - - - 7.375e-231 722.0
YHH3_k127_4008651_3 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 582.0
YHH3_k127_4008651_4 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003435 577.0
YHH3_k127_4008651_5 Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue K07320 - 2.1.1.298 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261 462.0
YHH3_k127_4008651_6 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 431.0
YHH3_k127_4008651_7 L,D-transpeptidase catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000597 272.0
YHH3_k127_4008651_8 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K01563,K11991 - 3.5.4.33,3.8.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000001762 241.0
YHH3_k127_4008651_9 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001039 227.0
YHH3_k127_4120310_0 Phage late control gene D protein (GPD) K11904 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002989 538.0
YHH3_k127_4120310_1 Type VI secretion, TssG K11895 - - 0.00000000000000000000000000000000000000000000000000000000003208 216.0
YHH3_k127_4120310_2 Type VI secretion K11896 - - 0.00003359 47.0
YHH3_k127_4131304_0 PFAM Glycosyl transferase, family 2 K00721,K00786 - 2.4.1.83 0.0 1342.0
YHH3_k127_4131304_1 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 469.0
YHH3_k127_4131304_2 Ankyrin repeat K06867 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005261 431.0
YHH3_k127_4131304_3 PFAM Zinc iron permease K16267 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006945 424.0
YHH3_k127_4131304_4 Transporter, small conductance mechanosensitive ion channel MscS family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007051 414.0
YHH3_k127_4131304_5 Putative DNA-binding domain K09929 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002682 388.0
YHH3_k127_4131304_6 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005988 366.0
YHH3_k127_4137697_0 type II secretion system protein E K02454 - - 8.666e-230 720.0
YHH3_k127_4137697_1 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004937 576.0
YHH3_k127_4137697_10 Belongs to the universal stress protein A family - - - 0.0000000000000000000000000000000000000000000000000000001438 197.0
YHH3_k127_4137697_11 - - - - 0.000000000000000000000000000025 118.0
YHH3_k127_4137697_2 Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism K01012 - 2.8.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002449 560.0
YHH3_k127_4137697_3 Belongs to the peptidase S33 family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 555.0
YHH3_k127_4137697_4 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00652 - 2.3.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001569 557.0
YHH3_k127_4137697_5 Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl- L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway K02169 - 2.1.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 465.0
YHH3_k127_4137697_6 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005687 399.0
YHH3_k127_4137697_7 PFAM Integral membrane protein TerC - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008175 364.0
YHH3_k127_4137697_8 The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters K02170 - 3.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008491 334.0
YHH3_k127_4137697_9 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring K01935 - 6.3.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 323.0
YHH3_k127_4214682_0 Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 428.0
YHH3_k127_4214682_1 Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP K01525 - 3.6.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003046 419.0
YHH3_k127_4214682_2 Belongs to the Fur family K03711 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000183 260.0
YHH3_k127_4214682_3 Phosphate acyltransferases K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000003981 174.0
YHH3_k127_4214682_4 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K06186 - - 0.0000000000000000000000000000000000000006992 151.0
YHH3_k127_4238704_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 2443.0
YHH3_k127_4253063_0 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 576.0
YHH3_k127_4253063_1 Binding-protein-dependent transport system inner membrane component K02011 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 567.0
YHH3_k127_4253063_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003801 562.0
YHH3_k127_4253063_3 Transglycosylase SLT domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005938 362.0
YHH3_k127_4253063_4 Protein of unknown function (DUF3750) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 353.0
YHH3_k127_4253063_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 321.0
YHH3_k127_4270536_0 regulation of circadian rhythm K17071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001845 457.0
YHH3_k127_4270536_1 Helix-turn-helix XRE-family like proteins K21498 - - 0.0000000000000000000000000001372 117.0
YHH3_k127_4270536_2 Plasmid maintenance system killer K07334 - - 0.000000000000000000000001205 105.0
YHH3_k127_4270536_4 hydrolase activity, acting on ester bonds - - - 0.00000013 53.0
YHH3_k127_4282089_0 - - - - 0.0000000000000000000000000000000000000000000000000000000004424 224.0
YHH3_k127_4282089_1 - - - - 0.000000000000000000000000000000000002788 143.0
YHH3_k127_4282089_2 Domain of unknown function (DUF1874) - - - 0.0000000000000000000000000005844 115.0
YHH3_k127_4284262_0 Belongs to the DegT DnrJ EryC1 family K12452 - 1.17.1.1 1.066e-211 664.0
YHH3_k127_4284262_1 inositol 2-dehydrogenase activity K19181 - 1.1.1.292 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009109 520.0
YHH3_k127_4284262_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002186 281.0
YHH3_k127_4284262_3 Acetyltransferase (GNAT) domain - - - 0.000000000000006477 77.0
YHH3_k127_4284530_0 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 2.011e-279 863.0
YHH3_k127_4284530_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007665 299.0
YHH3_k127_4284530_2 chain 5 L K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000009643 213.0
YHH3_k127_4300253_0 M3B, thimet oligopeptidase F K01414 - 3.4.24.70 0.0 1077.0
YHH3_k127_4300253_1 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002029 409.0
YHH3_k127_4300253_2 Diguanylate cyclase phosphodiesterase with PAS PAC sensor(S) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003539 354.0
YHH3_k127_4300253_3 - - - - 0.00000000000000000000000000000000000000000000000000000005064 205.0
YHH3_k127_4324492_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.0 1514.0
YHH3_k127_4324492_1 DHH family K07462 - - 4.308e-287 889.0
YHH3_k127_4324492_2 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.202e-244 760.0
YHH3_k127_4324492_3 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 - 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005007 547.0
YHH3_k127_4324492_4 PFAM MgtC SapB transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014 536.0
YHH3_k127_4324492_5 PhoH-like protein K06217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004035 467.0
YHH3_k127_4324492_6 Transporter associated domain K06189 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002824 460.0
YHH3_k127_4324492_7 uroporphyrinogen III synthase K01719 - 4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006139 339.0
YHH3_k127_4324492_8 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000158 243.0
YHH3_k127_4324492_9 - - - - 0.00000000000000000000000000000006919 128.0
YHH3_k127_4337755_0 Domain of unknown function (DUF4214) - - - 0.0 1142.0
YHH3_k127_4337755_1 MacB-like periplasmic core domain K02004 - - 2.15e-204 641.0
YHH3_k127_4337755_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002885 495.0
YHH3_k127_4337755_3 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004965 363.0
YHH3_k127_4337755_4 PFAM Exopolysaccharide synthesis, ExoD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007637 340.0
YHH3_k127_4352136_0 Histidine kinase K20974 - 2.7.13.3 0.0 1610.0
YHH3_k127_4352136_1 Putative diguanylate phosphodiesterase - - - 8.238e-204 641.0
YHH3_k127_4352136_2 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000341 256.0
YHH3_k127_4352136_3 Chromate transporter K07240 - - 0.0000000000000000000001803 97.0
YHH3_k127_4411751_0 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 3.5e-323 1000.0
YHH3_k127_4411751_1 AMP-dependent synthetase - - - 5.045e-266 826.0
YHH3_k127_4411751_2 Sigma-54 interaction domain K02481,K10941 - - 1.175e-231 723.0
YHH3_k127_4411751_3 Bacterial sugar transferase K21303 - 2.7.8.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000004868 259.0
YHH3_k127_4411751_4 PFAM Orn DAP Arg decarboxylase 2 K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000424 191.0
YHH3_k127_4458473_0 ATP synthase alpha/beta family, nucleotide-binding domain K02412 - 3.6.3.14 4.82e-252 783.0
YHH3_k127_4458473_1 flagellar motor switch protein FliM K02416 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 556.0
YHH3_k127_4458473_10 flagellar biosynthesis protein K02418 - - 0.000000000000000000000000000000001216 134.0
YHH3_k127_4458473_2 Plays a role in the flagellum-specific transport system K02419 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 393.0
YHH3_k127_4458473_3 Role in flagellar biosynthesis K02421 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001245 354.0
YHH3_k127_4458473_4 flagellar assembly protein FliH K02411 - - 0.00000000000000000000000000000000000000000000000000000000000000000005666 237.0
YHH3_k127_4458473_5 Flagellar motor switch K02417,K03225 - - 0.000000000000000000000000000000000000000000000000000000006441 202.0
YHH3_k127_4458473_6 Controls the rotational direction of flagella during chemotaxis K02415 - - 0.0000000000000000000000000000000000000000000000001553 182.0
YHH3_k127_4458473_7 Flagellar hook-length control K02414 - - 0.0000000000000000000000000000000000000000000000006922 192.0
YHH3_k127_4458473_8 Flagellar FliJ protein K02413 - - 0.000000000000000000000000000000000000000000002176 168.0
YHH3_k127_4458473_9 Role in flagellar biosynthesis K02420 - - 0.000000000000000000000000000000000000003644 147.0
YHH3_k127_4473884_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 1.332e-219 692.0
YHH3_k127_4473884_1 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929,K15792 - 6.3.2.10,6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 587.0
YHH3_k127_4473884_2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001459 447.0
YHH3_k127_4473884_3 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000002611 243.0
YHH3_k127_4530872_0 RNA polymerase recycling family C-terminal K03580 - - 0.0 1313.0
YHH3_k127_4530872_1 Thioredoxin K07396 - - 0.000000000000000000000000000000000000000000000000000006573 194.0
YHH3_k127_4530872_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety K07275,K16079 - - 0.0000000000000000000000000004554 114.0
YHH3_k127_4581283_0 PFAM NAD-dependent epimerase dehydratase K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 530.0
YHH3_k127_4581283_1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 464.0
YHH3_k127_4581283_2 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 434.0
YHH3_k127_4581283_3 Haloacid dehalogenase-like hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001463 325.0
YHH3_k127_4581283_4 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001281 316.0
YHH3_k127_4581283_5 Subtilase family K08651,K14645 - 3.4.21.66 0.00000000000000000000000000000000000000000000000000000000000000000000001351 248.0
YHH3_k127_4581283_6 Cytidylyltransferase K00979 - 2.7.7.38 0.00000000000000000000000000000000006971 134.0
YHH3_k127_4581283_7 transposition K07497 - - 0.0000000000000000003271 89.0
YHH3_k127_4586969_0 DNA polymerase III K01141 - 3.1.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001489 448.0
YHH3_k127_4586969_1 Belongs to the glutaminase family K01425 GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0040008,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0045926,GO:0046394,GO:0046395,GO:0048519,GO:0050789,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 3.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 435.0
YHH3_k127_4586969_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006456 363.0
YHH3_k127_4586969_3 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000000000000000000000000000001317 220.0
YHH3_k127_4586969_4 Transposase zinc-ribbon domain - - - 0.000000000000001113 76.0
YHH3_k127_4586969_5 protein conserved in bacteria - - - 0.0000004301 54.0
YHH3_k127_4620772_0 Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force K15987 - 3.6.1.1 0.0 1125.0
YHH3_k127_4620772_1 Belongs to the MIP aquaporin (TC 1.A.8) family K02440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 397.0
YHH3_k127_4620772_2 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005435 335.0
YHH3_k127_4620772_3 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000006776 154.0
YHH3_k127_4620772_4 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000005706 143.0
YHH3_k127_465235_0 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 3.647e-244 755.0
YHH3_k127_465235_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 1.916e-241 747.0
YHH3_k127_465235_2 Sodium:dicarboxylate symporter family K11102 - - 2.841e-236 734.0
YHH3_k127_465235_3 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 4.203e-205 638.0
YHH3_k127_465235_4 RIO1 family K07178 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 546.0
YHH3_k127_4666406_0 50S ribosome-binding GTPase K06946 - - 5.119e-205 649.0
YHH3_k127_4666406_1 Domain of unknown function (DUF697) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001507 232.0
YHH3_k127_4666406_2 helix_turn_helix, Lux Regulon - - - 0.000000000000009548 79.0
YHH3_k127_4671987_0 Heavy metal transport detoxification protein K17686,K19597 - 3.6.3.54 0.0 1269.0
YHH3_k127_4671987_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 1.503e-271 841.0
YHH3_k127_4671987_2 Pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 289.0
YHH3_k127_4671987_3 PFAM Polyketide cyclase dehydrase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004259 266.0
YHH3_k127_4671987_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007899 251.0
YHH3_k127_4671987_5 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.0000000000000000000000000000000000000000000000000000000000000000008383 230.0
YHH3_k127_4671987_6 - - - - 0.0000000000000000000000000000000000668 141.0
YHH3_k127_4671987_7 PFAM Heavy metal transport detoxification protein K07213 - - 0.00000000000000000000324 94.0
YHH3_k127_4708318_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1348.0
YHH3_k127_4708318_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102 563.0
YHH3_k127_4741393_0 TIGRFAM secondary thiamine-phosphate synthase enzyme - - - 0.000000000000000000000001224 107.0
YHH3_k127_4741393_1 Belongs to the helicase family K07466,K15255 - 3.6.4.12 0.000000000000000000005306 96.0
YHH3_k127_4741393_2 PIF1-like helicase K15255 - 3.6.4.12 0.00000000000000000005206 93.0
YHH3_k127_4741393_3 G-quadruplex DNA unwinding K15255 - 3.6.4.12 0.0000000000000000003503 91.0
YHH3_k127_4741393_4 Belongs to the helicase family K15255 - 3.6.4.12 0.000000000168 67.0
YHH3_k127_4741393_5 DNA helicase activity - - - 0.00000002635 58.0
YHH3_k127_4741393_6 Belongs to the helicase family K07466,K15255 - 3.6.4.12 0.00000003535 57.0
YHH3_k127_4741393_7 G-quadruplex DNA unwinding K15255 - 3.6.4.12 0.00002578 47.0
YHH3_k127_4741393_8 ATP-dependent DNA helicase K15255 - 3.6.4.12 0.0000489 46.0
YHH3_k127_4741393_9 Belongs to the helicase family K15255 - 3.6.4.12 0.000838 46.0
YHH3_k127_474160_0 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate K01952 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004642,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.3.5.3 0.0 1915.0
YHH3_k127_474160_1 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758 - 4.2.1.136 2.506e-214 677.0
YHH3_k127_474160_2 MotA/TolQ/ExbB proton channel family K02556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006516 499.0
YHH3_k127_474160_3 Membrane MotB of proton-channel complex MotA/MotB K02557 - - 0.0000000000000000000000000000000000000000000002079 169.0
YHH3_k127_4777452_0 FAD dependent oxidoreductase - - - 3.945e-304 951.0
YHH3_k127_4777452_1 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 7.437e-246 767.0
YHH3_k127_4777452_10 GTP-binding protein, HSR1-related - - - 0.0000000000000000000000000000000000000000001871 160.0
YHH3_k127_4777452_11 PFAM SH3, type 3 - - - 0.0000000000000000000000000000000000000000006201 168.0
YHH3_k127_4777452_12 cellulase activity - - - 0.0005545 52.0
YHH3_k127_4777452_2 Capsular polysaccharide biosynthesis protein CapK K01912 - 6.2.1.30 1.039e-218 685.0
YHH3_k127_4777452_3 Cache domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 613.0
YHH3_k127_4777452_4 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007758 483.0
YHH3_k127_4777452_5 Dimerisation domain of Zinc Transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001341 378.0
YHH3_k127_4777452_6 Etoposide-induced protein 2.4 (EI24) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005842 290.0
YHH3_k127_4777452_7 PFAM thioesterase superfamily K19222 - 3.1.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009756 285.0
YHH3_k127_4777452_8 One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA K03071 - - 0.000000000000000000000000000000000000000000000000000000000000000003537 228.0
YHH3_k127_4777452_9 Bacterial SH3 domain - - - 0.0000000000000000000000000000000000000000000000000001869 189.0
YHH3_k127_4840308_0 Phage terminase large subunit (GpA) K21512 - 3.1.21.4 0.000000000000000000000000000000000000000000000000000000000005922 221.0
YHH3_k127_4840308_1 Bacteriophage Lambda NinG protein - - - 0.0000000000000000000000000000000000000000000000000000001923 199.0
YHH3_k127_4840308_4 HNH endonuclease - - - 0.00008728 52.0
YHH3_k127_487774_0 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0 1428.0
YHH3_k127_487774_1 cyanophycin synthetase K03802 - 6.3.2.29,6.3.2.30 0.0 1238.0
YHH3_k127_487774_2 Acyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002445 509.0
YHH3_k127_487774_3 Domain of unknown function (DUF1854) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003417 240.0
YHH3_k127_4877891_0 Mechanosensitive ion channel K05802,K22051 - - 0.0 1094.0
YHH3_k127_4877891_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 3.503e-272 841.0
YHH3_k127_4877891_2 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 367.0
YHH3_k127_4877891_3 SNARE associated Golgi protein - - - 0.0000000000000000000002003 99.0
YHH3_k127_4877891_4 COG0474 Cation transport ATPase K01531 - 3.6.3.2 0.00000001082 59.0
YHH3_k127_4970536_0 Transmembrane secretion effector K05939 - 2.3.1.40,6.2.1.20 0.0 1743.0
YHH3_k127_4970536_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 6.605e-219 686.0
YHH3_k127_4970536_2 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772,K03815 - 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001797 392.0
YHH3_k127_4970536_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000241 296.0
YHH3_k127_4970536_4 Uncharacterised protein family (UPF0093) K08973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002597 258.0
YHH3_k127_4970536_5 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000001488 245.0
YHH3_k127_5023334_0 Cysteine-rich domain - - - 0.0 1078.0
YHH3_k127_5023334_1 Belongs to the ABC transporter superfamily K02031,K02032 - - 9.053e-311 965.0
YHH3_k127_5023334_2 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 4.406e-308 949.0
YHH3_k127_5023334_3 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 5.109e-228 715.0
YHH3_k127_5023334_4 Rubrerythrin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004299 276.0
YHH3_k127_5023334_5 Uncharacterized BCR, YaiI/YqxD family COG1671 K09768 - - 0.00000000000000000000000000000000000000000000000000000000000000000635 228.0
YHH3_k127_5023334_6 CNP1-like family - - - 0.000000000000000000000000000000000000000000000000000000000000006039 220.0
YHH3_k127_5023334_7 HDOD domain - - - 0.0000000000000000000000000000000000005345 141.0
YHH3_k127_5046380_0 Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate K02558 - 6.3.2.45 8.798e-226 707.0
YHH3_k127_5046380_1 Multicopper oxidase K00368,K08100 - 1.3.3.5,1.7.2.1 1.932e-208 652.0
YHH3_k127_5046380_2 Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon K01894 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319 407.0
YHH3_k127_5046380_3 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 GO:0000166,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003999,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0012505,GO:0016192,GO:0016208,GO:0016740,GO:0016757,GO:0016763,GO:0017076,GO:0018130,GO:0019438,GO:0030141,GO:0030554,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0034641,GO:0034654,GO:0034774,GO:0036094,GO:0036230,GO:0042119,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046483,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 305.0
YHH3_k127_5046380_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000001955 241.0
YHH3_k127_5046380_5 - - - - 0.0000000000000000000000000000000000002105 142.0
YHH3_k127_5046380_6 NAD(P)H-dependent FMN reductase - - - 0.000000000000000000003702 93.0
YHH3_k127_5046380_8 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.0009153 44.0
YHH3_k127_5051283_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 3.67e-247 768.0
YHH3_k127_5051283_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00833 - 2.6.1.62 2.454e-228 713.0
YHH3_k127_5051283_2 Beta-Casp domain K07576 - - 1.235e-227 712.0
YHH3_k127_5051283_3 Trypsin - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004028 380.0
YHH3_k127_5051283_4 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001556 276.0
YHH3_k127_5051283_5 response regulator - - - 0.00000000000000000000000000000000000000002339 159.0
YHH3_k127_5051283_6 - - - - 0.0000004895 55.0
YHH3_k127_5088129_0 SMART ATPase, AAA type, core K06148 - - 2.23e-293 908.0
YHH3_k127_5088129_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00262 - 1.4.1.4 5.989e-258 798.0
YHH3_k127_5088129_2 Soluble lytic murein transglycosylase L domain K08309 - - 1.29e-248 781.0
YHH3_k127_5088129_3 Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases K00974 - 2.7.7.72 3.562e-215 674.0
YHH3_k127_5088129_4 Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner K09810 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008969 383.0
YHH3_k127_5088129_5 HNH nucleases - - - 0.0000000000000000000000000000000000000000000000000004785 184.0
YHH3_k127_5108421_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002584 423.0
YHH3_k127_5108421_1 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003527 360.0
YHH3_k127_5108421_2 coenzyme F390 K01912 - 6.2.1.30 0.00000000000000000000000000000000000000000000009334 176.0
YHH3_k127_5108421_3 Glycosyl transferase 4-like domain - - - 0.0000000000003333 74.0
YHH3_k127_5234535_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0 1420.0
YHH3_k127_5234535_1 Belongs to the pseudomonas-type ThrB family K02204 - 2.7.1.39 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007575 487.0
YHH3_k127_5234535_2 Cytokinin riboside 5'-monophosphate phosphoribohydrolase K06966 - 3.2.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008339 437.0
YHH3_k127_5234535_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008885 424.0
YHH3_k127_5234535_4 Protein of unknown function (DUF2782) - - - 0.00000000000000000000000000000000000000002379 155.0
YHH3_k127_525565_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0 1105.0
YHH3_k127_525565_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 437.0
YHH3_k127_525565_2 Protein of unknown function (DUF971) - - - 0.000000000000000000000000000000000000000000000006623 172.0
YHH3_k127_525565_3 - - - - 0.000000000000000000000000000000000000000000005626 166.0
YHH3_k127_528859_0 Threonine synthase K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006494 578.0
YHH3_k127_528859_1 succinate dehydrogenase fumarate reductase K00240 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0022900,GO:0022904,GO:0044237,GO:0044464,GO:0045333,GO:0048037,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055114,GO:0071944 1.3.5.1,1.3.5.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 456.0
YHH3_k127_528859_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007205 441.0
YHH3_k127_528859_3 Flavinator of succinate dehydrogenase K09159 - - 0.00000000000000000000000000000009927 125.0
YHH3_k127_5294619_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903,K14067 - 6.2.1.5,6.2.1.9 2.969e-195 614.0
YHH3_k127_5294619_1 phosphatase activity K01560,K07025,K20866,K21063 GO:0003674,GO:0003824,GO:0006766,GO:0006767,GO:0006771,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042578,GO:0042726,GO:0042727,GO:0043726,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 3.1.3.10,3.1.3.104,3.8.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003979 280.0
YHH3_k127_5294619_2 Iron-binding zinc finger CDGSH type - - - 0.0000000000000000000000000000000001291 132.0
YHH3_k127_5294619_3 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.000000000000000000000000000001713 123.0
YHH3_k127_5294619_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902,K08692 GO:0003674,GO:0003824,GO:0004774,GO:0004776,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0016874,GO:0016877,GO:0016878,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013 6.2.1.5,6.2.1.9 0.00000000000000000000001128 101.0
YHH3_k127_5294619_5 - - - - 0.00000000000155 69.0
YHH3_k127_5374915_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0 1214.0
YHH3_k127_5374915_1 Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters K06204 - - 0.000000000000000000000000000000000000000000000000000000000000000000004682 237.0
YHH3_k127_5374915_2 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000000000000001084 154.0
YHH3_k127_5406941_0 Belongs to the peptidase S8 family K14645 - - 6.793e-212 680.0
YHH3_k127_5406941_1 Pyridine nucleotide-disulphide oxidoreductase K05297,K12265 - 1.18.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004286 573.0
YHH3_k127_5406941_2 MlaA lipoprotein K04754 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 338.0
YHH3_k127_5406941_3 Rubredoxin - - - 0.00000000000000000000000006475 107.0
YHH3_k127_5517523_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1625.0
YHH3_k127_5517523_1 DNA helicase K03654 - 3.6.4.12 1.08e-302 936.0
YHH3_k127_5517523_10 - - - - 0.00000000000000000000000000000000000009559 147.0
YHH3_k127_5517523_11 Domain of unknown function (DUF4124) - - - 0.00000000000003819 79.0
YHH3_k127_5517523_2 TIGRFAM glutamine synthetase, type I K01915,K20712 GO:0003674,GO:0003824,GO:0006725,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016866,GO:0034022,GO:0042537,GO:0044237,GO:0050486,GO:0071704,GO:1901360 5.4.4.3,6.3.1.2 2.251e-285 878.0
YHH3_k127_5517523_3 TIGRFAM Sodium sulphate symporter K11106,K14445 - - 4.933e-236 737.0
YHH3_k127_5517523_4 PFAM porin, Gram-negative type - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004874 603.0
YHH3_k127_5517523_5 MOFRL family K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 557.0
YHH3_k127_5517523_6 Exodeoxyribonuclease III xth K01142 - 3.1.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 420.0
YHH3_k127_5517523_7 phospholipase Carboxylesterase K06999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001814 274.0
YHH3_k127_5517523_8 Protein of unknown function (DUF2806) - - - 0.000000000000000000000000000000000000000000000000000006336 194.0
YHH3_k127_5517523_9 Domain of unknown function (DUF4124) - - - 0.00000000000000000000000000000000000005888 147.0
YHH3_k127_5632575_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 1.056e-215 676.0
YHH3_k127_5632575_1 PFAM Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003725 480.0
YHH3_k127_5632575_2 Cytidylyltransferase K00979 - 2.7.7.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001137 280.0
YHH3_k127_5669054_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 1.477e-321 994.0
YHH3_k127_5669054_1 Glutamate-cysteine ligase K01919 - 6.3.2.2 1.404e-246 766.0
YHH3_k127_5669054_2 helicase - - - 2.376e-220 688.0
YHH3_k127_5669054_3 Belongs to the prokaryotic GSH synthase family K01920 - 6.3.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115 475.0
YHH3_k127_5669054_4 ISXO2-like transposase domain - - - 0.00000000000000000009419 89.0
YHH3_k127_5677425_0 AAA domain (dynein-related subfamily) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001373 539.0
YHH3_k127_5677425_1 Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 299.0
YHH3_k127_5677425_2 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000003702 264.0
YHH3_k127_5677425_3 Belongs to the universal stress protein A family - - - 0.000000000000000000000000000000000000000000000000000000000000000008706 227.0
YHH3_k127_5677425_4 PFAM Magnesium chelatase, ChlI subunit K07391 - - 0.000000000000000000000000000000000000000000000000000000004094 202.0
YHH3_k127_5677425_5 - - - - 0.000000000000000000000000000000000000000000000001265 176.0
YHH3_k127_5677425_6 Belongs to the universal stress protein A family - - - 0.000000002863 58.0
YHH3_k127_5677425_7 Belongs to the universal stress protein A family - - - 0.0000001892 52.0
YHH3_k127_5677425_8 Belongs to the universal stress protein A family - - - 0.0000003413 53.0
YHH3_k127_5756409_0 PFAM aminotransferase, class I K14267 - 2.6.1.17 2.527e-202 635.0
YHH3_k127_5756409_1 Fungal family of unknown function (DUF1776) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001847 417.0
YHH3_k127_5756409_2 Belongs to the transferase hexapeptide repeat family K00674 - 2.3.1.117 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004322 401.0
YHH3_k127_5756409_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 375.0
YHH3_k127_5756409_4 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 365.0
YHH3_k127_5756409_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008114 325.0
YHH3_k127_5756409_6 PFAM Heat shock protein DnaJ, N-terminal - - - 0.00000000000000000000000000000000000000000000000000000000000008539 226.0
YHH3_k127_5756409_7 acetyltransferases and hydrolases with the alpha beta hydrolase fold - - - 0.000000000000000000000000000000001311 139.0
YHH3_k127_5756409_8 Putative motility protein - - - 0.00000000000000000005934 90.0
YHH3_k127_5756409_9 - - - - 0.0000000696 59.0
YHH3_k127_5761993_0 Belongs to the ATCase OTCase family K00609 - 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001122 568.0
YHH3_k127_5761993_1 Cysteine-rich domain K11473 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000761 532.0
YHH3_k127_5761993_2 Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol K06134 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006272 357.0
YHH3_k127_5761993_3 Belongs to the UPF0301 (AlgH) family K07735 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007279 299.0
YHH3_k127_5761993_4 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005312 271.0
YHH3_k127_5761993_5 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000006578 243.0
YHH3_k127_5761993_6 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000003427 171.0
YHH3_k127_5761993_7 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.00000000000000000000000000000000000000001543 154.0
YHH3_k127_5761993_8 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000000000000000000002712 146.0
YHH3_k127_5761993_9 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000002436 59.0
YHH3_k127_5940952_0 PFAM Aminotransferase, class V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 1.997e-230 719.0
YHH3_k127_5940952_1 Glycosyl transferase family 4 K13007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008628 455.0
YHH3_k127_5940952_2 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000871 372.0
YHH3_k127_5978325_0 ABC-type transport system involved in lysophospholipase L1 biosynthesis permease component K02004 - - 0.0 1145.0
YHH3_k127_5978325_1 Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs K08300 - 3.1.26.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 565.0
YHH3_k127_5978325_2 Responsible for synthesis of pseudouridine from uracil K06179 - 5.4.99.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 445.0
YHH3_k127_5978325_3 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001151 349.0
YHH3_k127_5978325_4 Domain of unknown function (DUF697) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006033 314.0
YHH3_k127_5978325_5 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000002154 266.0
YHH3_k127_5994682_0 Uncharacterized protein family (UPF0051) K09014 - - 1.974e-294 906.0
YHH3_k127_5994682_1 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001293 452.0
YHH3_k127_5994682_2 ABC transporter K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007286 444.0
YHH3_k127_5999493_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 0.0 1009.0
YHH3_k127_5999493_1 Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis K03182 - 4.1.1.98 2.207e-308 946.0
YHH3_k127_5999493_2 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006097 490.0
YHH3_k127_5999493_3 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009948 406.0
YHH3_k127_5999493_4 Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway K03181 - 4.1.3.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001012 281.0
YHH3_k127_5999493_5 Endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000000000000000000000001535 217.0
YHH3_k127_6075225_0 - - - - 1.128e-208 662.0
YHH3_k127_6075225_1 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004886 465.0
YHH3_k127_6075225_2 SCO1/SenC - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004727 245.0
YHH3_k127_6095368_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 4.763e-258 798.0
YHH3_k127_6095368_1 Belongs to the ABC transporter superfamily K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000002937 220.0
YHH3_k127_6095368_2 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000000000000000000000000000000000004811 218.0
YHH3_k127_6095368_3 Cupin domain K11312 - - 0.00000000000000000000000000000000000000001837 154.0
YHH3_k127_6095368_4 Binds the 23S rRNA K02909 - - 0.000000000000000000000000000000000005034 138.0
YHH3_k127_6095368_5 Zonular occludens toxin (Zot) K10954 - - 0.000001775 51.0
YHH3_k127_6185361_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1340.0
YHH3_k127_6185361_1 DNA polymerase X family K02347 - - 4.917e-319 982.0
YHH3_k127_6185361_10 Archease protein family (MTH1598/TM1083) - - - 0.0000000000000000000000000000000000000000000000000000000006908 203.0
YHH3_k127_6185361_11 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - - - 0.000000000000000000000000000000000000000000000000000000000827 209.0
YHH3_k127_6185361_12 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000000000000002986 202.0
YHH3_k127_6185361_13 - - - - 0.00000000000000000000000000000000000000000000000000000000737 202.0
YHH3_k127_6185361_14 PFAM Transposase, IS66 K07484 - - 0.000000000000000000000006819 101.0
YHH3_k127_6185361_15 - - - - 0.0000000000000000001033 93.0
YHH3_k127_6185361_16 Hsp20/alpha crystallin family K13993 - - 0.0000000000000002373 79.0
YHH3_k127_6185361_2 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 1.584e-253 788.0
YHH3_k127_6185361_3 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 1.149e-229 718.0
YHH3_k127_6185361_4 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002171 344.0
YHH3_k127_6185361_5 Sigma 54 modulation protein / S30EA ribosomal protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 308.0
YHH3_k127_6185361_6 Isochorismatase family K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007351 299.0
YHH3_k127_6185361_7 ribosomal large subunit export from nucleus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007822 274.0
YHH3_k127_6185361_8 - - - - 0.000000000000000000000000000000000000000000000000000000000000000001815 230.0
YHH3_k127_6185361_9 Universal stress protein - - - 0.0000000000000000000000000000000000000000000000000000000003759 205.0
YHH3_k127_6350264_0 Citrate synthase, C-terminal domain K01659 - 2.3.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004351 530.0
YHH3_k127_6350264_1 Tetratricopeptide repeat K02200 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 411.0
YHH3_k127_6350264_2 PFAM Alkyl hydroperoxide reductase K03564 GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045454,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051920,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748 1.11.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000004472 239.0
YHH3_k127_6369038_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 0.0 1428.0
YHH3_k127_6369038_1 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K21071 - 2.7.1.11,2.7.1.90 8.167e-208 647.0
YHH3_k127_6369038_2 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 4.975e-195 611.0
YHH3_k127_6369038_3 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009184 376.0
YHH3_k127_6369038_4 - - - - 0.00000000000000000000000000000000000000000000000006837 178.0
YHH3_k127_6369038_5 Modulates RecA activity K03565 - - 0.0000000000000000000000000000000000000000000832 164.0
YHH3_k127_6369038_6 - - - - 0.0000000000000000000000000000000007989 133.0
YHH3_k127_6382728_0 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 1.988e-305 945.0
YHH3_k127_6382728_1 Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation K03771 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005918 573.0
YHH3_k127_6382728_2 Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) K00097 - 1.1.1.262 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 486.0
YHH3_k127_6382728_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 - 2.1.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 377.0
YHH3_k127_6400467_0 response regulator K07657 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005615 322.0
YHH3_k127_6400467_1 Cna protein B-type domain - - - 0.00002967 53.0
YHH3_k127_6419603_0 acyl-CoA dehydrogenase K06445 - - 0.0 1227.0
YHH3_k127_6419603_1 AMP-dependent synthetase K01897 - 6.2.1.3 5.237e-286 888.0
YHH3_k127_6419603_10 Belongs to the UPF0102 family K07460 - - 0.00000000000000000000000000000000000000000000007255 170.0
YHH3_k127_6419603_11 Cna protein B-type domain - - - 0.0007838 48.0
YHH3_k127_6419603_2 Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls K01439 - 3.5.1.18 8.731e-211 659.0
YHH3_k127_6419603_3 Putative S-adenosyl-L-methionine-dependent methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003357 571.0
YHH3_k127_6419603_4 Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate K01465 - 3.5.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 556.0
YHH3_k127_6419603_5 LppC putative lipoprotein K07121 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 437.0
YHH3_k127_6419603_6 Short-chain dehydrogenase reductase SDR K00059,K03793 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008667,GO:0009058,GO:0009237,GO:0009238,GO:0009239,GO:0009712,GO:0009713,GO:0009987,GO:0016043,GO:0016491,GO:0016627,GO:0016628,GO:0018130,GO:0018958,GO:0019184,GO:0019290,GO:0019438,GO:0019540,GO:0019748,GO:0022607,GO:0034641,GO:0042802,GO:0043043,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046189,GO:0046483,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 1.1.1.100,1.5.1.33 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000469 395.0
YHH3_k127_6419603_7 Belongs to the ALAD family K01698 GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0043167,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009007 377.0
YHH3_k127_6419603_8 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.000000000000000000000000000000000000000000000000000000000000000000000009512 252.0
YHH3_k127_6419603_9 Protein of unknown function, DUF393 - - - 0.000000000000000000000000000000000000000000000000000000000000005201 217.0
YHH3_k127_64449_0 Multicopper oxidase type - - - 0.0 1083.0
YHH3_k127_64449_1 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 318.0
YHH3_k127_64449_2 Thioredoxin-like - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000102 265.0
YHH3_k127_64449_3 Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps K04084 - 1.8.1.8 0.0000000000000000000000000000000000000000000000000000000003738 203.0
YHH3_k127_6463551_0 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor K02668 - 2.7.13.3 2.76e-235 737.0
YHH3_k127_6463551_1 May be involved in recombinational repair of damaged DNA K03631 - - 1.279e-223 705.0
YHH3_k127_6463551_2 Sigma-54 interaction domain K02667 - - 3.608e-209 659.0
YHH3_k127_6463551_3 Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group K02259 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053 567.0
YHH3_k127_6463551_4 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008191 329.0
YHH3_k127_6463551_5 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004074 289.0
YHH3_k127_6463551_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005136 269.0
YHH3_k127_6463551_7 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007994 250.0
YHH3_k127_6463551_8 Belongs to the UPF0125 (RnfH) family K09801 - - 0.000000000000000000000000000006919 121.0
YHH3_k127_6463551_9 - K06950 - - 0.0000000000001695 73.0
YHH3_k127_646813_0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K18005 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 1.12.1.2 3.784e-255 799.0
YHH3_k127_646813_1 Protein of unknown function (DUF3047) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 304.0
YHH3_k127_646813_2 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000188 205.0
YHH3_k127_6532342_0 AcrB/AcrD/AcrF family - - - 0.0 1270.0
YHH3_k127_6532342_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798 - - 0.0000000000000000000000000000000000000000000000006584 188.0
YHH3_k127_6532342_2 Thiol disulfide interchange protein K03673 - - 0.00000000000000000000000000000000000000000001588 169.0
YHH3_k127_6532342_3 photosynthesis K00368 - 1.7.2.1 0.0000000000000000000000000000008382 128.0
YHH3_k127_6532342_5 PFAM transposase, IS4 family protein - - - 0.000000000003019 67.0
YHH3_k127_6537442_0 Diguanylate cyclase - - - 1.251e-256 801.0
YHH3_k127_6537442_1 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 6.55e-220 694.0
YHH3_k127_6537442_2 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008911 466.0
YHH3_k127_6537442_3 OsmC-like protein K06889,K07397 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 425.0
YHH3_k127_6537442_4 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001601 297.0
YHH3_k127_659454_0 TIGRFAM TonB-dependent vitamin B12 receptor K16092 - - 1.483e-294 913.0
YHH3_k127_659454_1 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source K02224 - 6.3.5.11,6.3.5.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 596.0
YHH3_k127_659454_2 Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group K02227 - 6.3.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 404.0
YHH3_k127_659454_3 Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids K19221 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003874 375.0
YHH3_k127_659454_4 Nitroreductase family K02303,K04719 - 1.13.11.79,2.1.1.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002915 366.0
YHH3_k127_659454_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001778 310.0
YHH3_k127_659454_6 nucleotidyltransferase activity K01154,K07076 - 3.1.21.3 0.0000000000000000000000000004069 116.0
YHH3_k127_659454_7 nucleotidyltransferase activity - - - 0.00000000000000000000000001732 111.0
YHH3_k127_659454_8 nucleoside 2-deoxyribosyltransferase - - - 0.000000001043 59.0
YHH3_k127_659454_9 Pfam Aminotransferase class I and II K02225 - - 0.0000001251 53.0
YHH3_k127_659924_0 PFAM von Willebrand factor type A - - - 3.196e-298 923.0
YHH3_k127_659924_1 PFAM AAA domain (dynein-related subfamily) K04748 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001918 484.0
YHH3_k127_659924_2 RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site K01601 - 4.1.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009855 444.0
YHH3_k127_659924_3 PFAM Ribulose bisphosphate carboxylase, small chain K01602 - 4.1.1.39 0.00000000000000000000000000000000000000000000000000000001227 199.0
YHH3_k127_659924_4 - - - - 0.00000000000000000000000000000000000000000002639 162.0
YHH3_k127_6624497_0 type II secretion system protein E K02670 - - 4.42e-211 659.0
YHH3_k127_6624497_1 PFAM Type II secretion system protein E K02669,K12203 - - 6.532e-206 643.0
YHH3_k127_6624497_10 PFAM Peptidase M16 K07263 - - 0.000000000000000000002195 93.0
YHH3_k127_6624497_11 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 0.000000000000000008526 83.0
YHH3_k127_6624497_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008112 490.0
YHH3_k127_6624497_3 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002998 278.0
YHH3_k127_6624497_4 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001178 253.0
YHH3_k127_6624497_5 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003171 242.0
YHH3_k127_6624497_6 Conserved hypothetical protein 95 K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000000000000000000000009588 229.0
YHH3_k127_6624497_7 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 - - 0.00000000000000000000000000000000000000000000007142 170.0
YHH3_k127_6624497_8 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000001861 145.0
YHH3_k127_6624497_9 ATP synthase I chain K02116 - - 0.0000000000000000000000006509 108.0
YHH3_k127_6647981_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 6.401e-250 775.0
YHH3_k127_6647981_1 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 2.601e-244 760.0
YHH3_k127_6647981_2 Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme K02302,K02303 - 1.3.1.76,2.1.1.107,4.99.1.4 5.888e-235 733.0
YHH3_k127_6647981_3 TIGRFAM phosphate binding protein K02040 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 540.0
YHH3_k127_6647981_4 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001623 370.0
YHH3_k127_6647981_5 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.00000000000000000000000000007405 115.0
YHH3_k127_6813209_0 O-Antigen ligase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006729 514.0
YHH3_k127_6813209_1 Membrane protein involved in the export of O-antigen and teichoic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007038 335.0
YHH3_k127_6813209_2 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000008542 188.0
YHH3_k127_6823901_0 protein import K01406,K02030 - 3.4.24.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 498.0
YHH3_k127_6823901_1 response to hydrogen peroxide - - - 0.000001487 57.0
YHH3_k127_6946057_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 6.348e-243 757.0
YHH3_k127_6946057_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 3.234e-194 615.0
YHH3_k127_6946057_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 - - 0.0000000000000000000000000000000000000000000000000002925 186.0
YHH3_k127_6951421_0 AMP-dependent synthetase K00666 - - 0.0 1030.0
YHH3_k127_6951421_1 Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA K06917 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003915 495.0
YHH3_k127_6951421_2 NmrA-like family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 389.0
YHH3_k127_6951421_3 COG3639 ABC-type phosphate phosphonate transport system, permease component K02042 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001452 280.0
YHH3_k127_6951421_4 Phosphopantetheine attachment site - - - 0.00000000000003656 73.0
YHH3_k127_6953858_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 9.117e-216 673.0
YHH3_k127_6953858_1 Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX K00228 GO:0003674,GO:0005488,GO:0005515,GO:0042802,GO:0042803,GO:0046983 1.3.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004804 565.0
YHH3_k127_6953858_10 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.00000000000000000000000000000000000000000000000002181 181.0
YHH3_k127_6953858_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 513.0
YHH3_k127_6953858_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001655 411.0
YHH3_k127_6953858_4 Belongs to the TrpC family K01609 GO:0003674,GO:0003824,GO:0004425,GO:0016829,GO:0016830,GO:0016831 4.1.1.48 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001551 357.0
YHH3_k127_6953858_5 HDOD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007341 348.0
YHH3_k127_6953858_6 PFAM Glutamine amidotransferase class-I K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 338.0
YHH3_k127_6953858_7 COG1943 Transposase and inactivated derivatives K07491 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000409 294.0
YHH3_k127_6953858_8 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002377 287.0
YHH3_k127_6953858_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000457 254.0
YHH3_k127_7008156_0 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002164 474.0
YHH3_k127_7008156_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 450.0
YHH3_k127_7008156_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003691 423.0
YHH3_k127_7029129_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0 1043.0
YHH3_k127_7029129_1 Surface antigen K07278 - - 4.548e-239 748.0
YHH3_k127_7036926_0 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K07277 - - 0.0 1253.0
YHH3_k127_7036926_1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 381.0
YHH3_k127_7036926_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 283.0
YHH3_k127_7036926_3 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.000000000000000000000000000000000000000000000000000000000000000000000000000307 258.0
YHH3_k127_7036926_4 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001006 257.0
YHH3_k127_7036926_5 Belongs to the skp family K06142 - - 0.000000000000000000000000000000000000000000000000005636 187.0
YHH3_k127_7048092_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1394.0
YHH3_k127_7048092_1 Belongs to the thiolase family K00632 - 2.3.1.16 2.337e-223 697.0
YHH3_k127_7102996_0 Helicase associated domain (HA2) Add an annotation K03578 - 3.6.4.13 0.0 1530.0
YHH3_k127_7102996_1 HELICc2 K03722 - 3.6.4.12 0.0 1057.0
YHH3_k127_7102996_2 Belongs to the anti-sigma-factor antagonist family - - - 0.000000000000000000000000000000000000000000000000000000000000000000009339 239.0
YHH3_k127_7102996_3 Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.0000000000000000000000000000000000000000000000008496 179.0
YHH3_k127_7107052_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003998 445.0
YHH3_k127_7107052_1 Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA K03498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007776 381.0
YHH3_k127_7107052_2 TrkA-N domain K03499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000652 272.0
YHH3_k127_7107052_3 HlyD family secretion protein K15727 - - 0.0000000000000000000000000000000000000000000000000243 182.0
YHH3_k127_7107052_4 Cation transporter/ATPase, N-terminus - - - 0.0000000000357 66.0
YHH3_k127_7107052_5 HlyD family secretion protein K15727 - - 0.00000000004067 64.0
YHH3_k127_7123375_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 1.216e-231 725.0
YHH3_k127_7123375_1 Belongs to the DEAD box helicase family - GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904 - 3.587e-221 693.0
YHH3_k127_7123375_2 Tyrosine recombinase XerD K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001426 361.0
YHH3_k127_7123375_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003212 314.0
YHH3_k127_7123375_4 PFAM Integrase, catalytic region K07497 - - 0.00000000000002992 72.0
YHH3_k127_715825_0 extracellular solute-binding protein, family 5 - - - 0.0 1146.0
YHH3_k127_715825_1 Diguanylate cyclase - - - 4.511e-246 786.0
YHH3_k127_715825_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 451.0
YHH3_k127_715825_3 PFAM Peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 389.0
YHH3_k127_715825_4 protein conserved in bacteria K09973 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001787 286.0
YHH3_k127_715825_5 SprA-related family - - - 0.000000000000000000000000000001187 129.0
YHH3_k127_715825_6 Transposase zinc-ribbon domain - - - 0.0000000000001534 70.0
YHH3_k127_717902_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009096 479.0
YHH3_k127_717902_1 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000003165 238.0
YHH3_k127_717902_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length K04760 - - 0.000000000000000000000000000000000000000000000000000000000003839 213.0
YHH3_k127_717902_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000001393 165.0
YHH3_k127_717902_4 PFAM DNA methylase, adenine-specific K03427 - 2.1.1.72 0.0003504 43.0
YHH3_k127_7191758_0 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 1.202e-235 732.0
YHH3_k127_7191758_1 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 2.176e-202 633.0
YHH3_k127_7191758_2 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004102 350.0
YHH3_k127_7191758_3 PFAM TENA THI-4 protein Coenzyme PQQ biosynthesis protein C K06137 - 1.3.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003412 329.0
YHH3_k127_7191758_4 CreA protein K05805 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001272 262.0
YHH3_k127_7191758_5 membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002576 245.0
YHH3_k127_7191758_6 Belongs to the glutaredoxin family. Monothiol subfamily K07390 - - 0.00000000000000000000000000000000000000000000002514 171.0
YHH3_k127_7195989_0 Diguanylate cyclase phosphodiesterase with PAS PAC - - - 0.00000000000000000000000000000000000000000000000000000000000002277 231.0
YHH3_k127_7195989_1 Transposase K07483 - - 0.000000000000000276 83.0
YHH3_k127_7195989_2 Nucleoside-binding outer membrane - - - 0.000000001309 62.0
YHH3_k127_734515_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.0 1401.0
YHH3_k127_734515_1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 3.013e-297 921.0
YHH3_k127_734515_2 Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate K00147 GO:0003674,GO:0003824,GO:0004350,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.2.1.41 9.666e-226 704.0
YHH3_k127_734515_3 7 transmembrane helices usually fused to an inactive transglutaminase - - - 2.291e-217 682.0
YHH3_k127_734515_4 NlpB/DapX lipoprotein K07287 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 545.0
YHH3_k127_734515_5 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003 481.0
YHH3_k127_734515_6 SMART Diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 345.0
YHH3_k127_734515_7 Putative ATP-dependant zinc protease - - - 0.0000000000000000000000000000000000000000000000000000000000000001492 231.0
YHH3_k127_734515_8 - - - - 0.0000000004006 61.0
YHH3_k127_7378574_0 Acts as a magnesium transporter K06213 - - 8.782e-235 734.0
YHH3_k127_7378574_1 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004764,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019632,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:1901576,GO:1901615 1.1.1.25 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001329 381.0
YHH3_k127_7378574_2 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005665 305.0
YHH3_k127_7378574_3 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001577 300.0
YHH3_k127_7378574_4 Uncharacterised nucleotidyltransferase - - - 0.0000000000000000000000000000000000000000000000000000009072 194.0
YHH3_k127_7430969_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.0 1033.0
YHH3_k127_7430969_1 SMART metal-dependent phosphohydrolase, HD - - - 0.00000000000000000000000000000000000000000000000002625 183.0
YHH3_k127_74473_0 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009102 529.0
YHH3_k127_74473_1 Cyclic nucleotide-binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004029 351.0
YHH3_k127_74473_2 Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA K02533 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 343.0
YHH3_k127_74473_3 Two component signalling adaptor domain K02659 - - 0.0000000000000000000000000000000000000000000000000000000001527 207.0
YHH3_k127_74473_4 cheY-homologous receiver domain K02658 - - 0.000000000000000000000000000000000000000000000000000009644 190.0
YHH3_k127_7455253_0 PFAM Integrase catalytic - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004092 554.0
YHH3_k127_7455253_1 DNA-dependent DNA replication - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 330.0
YHH3_k127_7455253_2 Bacteriophage replication gene A protein (GPA) - - - 0.000000000000000000002363 94.0
YHH3_k127_7455253_3 cyclic-guanylate-specific phosphodiesterase activity - - - 0.00000006948 54.0
YHH3_k127_7470740_0 peroxidase - - - 1.955e-208 659.0
YHH3_k127_7470740_1 Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides K00997,K01207 - 2.7.8.7,3.2.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001641 509.0
YHH3_k127_7470740_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009535 314.0
YHH3_k127_7470740_3 Cytochrome P450 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001641 271.0
YHH3_k127_7470740_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001354 252.0
YHH3_k127_7470740_5 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.00000000000000000000000000000000000001356 145.0
YHH3_k127_7477416_0 Catalyzes cross-linking of the peptidoglycan cell wall K05515 - 3.4.16.4 9.122e-318 982.0
YHH3_k127_7477416_1 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 3.338e-271 839.0
YHH3_k127_7477416_10 shape-determining protein MreD K03571 - - 0.000000000000000000000000000000000000000000000000000000004465 203.0
YHH3_k127_7477416_11 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000002986 147.0
YHH3_k127_7477416_2 ABC transporter K06147,K18893 - - 1.656e-234 731.0
YHH3_k127_7477416_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 5.014e-223 696.0
YHH3_k127_7477416_4 cell shape determining protein, MreB Mrl K03569 - - 1.321e-209 653.0
YHH3_k127_7477416_5 TraB family - - - 3.504e-209 657.0
YHH3_k127_7477416_6 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001773 593.0
YHH3_k127_7477416_7 Involved in formation and maintenance of cell shape K03570 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001507 396.0
YHH3_k127_7477416_8 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005381 363.0
YHH3_k127_7477416_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 306.0
YHH3_k127_7520725_0 Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00163 - 1.2.4.1 0.0 1619.0
YHH3_k127_7520725_1 Methylenetetrahydrofolate reductase K00297 GO:0000166,GO:0003674,GO:0003824,GO:0004489,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0018130,GO:0019438,GO:0019752,GO:0022607,GO:0034641,GO:0036094,GO:0042398,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0048037,GO:0050660,GO:0050662,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.5.1.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004024 495.0
YHH3_k127_7520725_2 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001227 433.0
YHH3_k127_7520725_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004214 265.0
YHH3_k127_756137_0 Sodium:dicarboxylate symporter family K11102 - - 3.002e-211 662.0
YHH3_k127_756137_1 PFAM Metal-dependent phosphohydrolase, HD K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 608.0
YHH3_k127_756137_2 PFAM DNA-repair protein, UmuC-like K03502 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001248 493.0
YHH3_k127_756137_3 Belongs to the peptidase S24 family K03503 - - 0.0000000000000000000000000000000000000000002366 165.0
YHH3_k127_7565637_0 Protein of unknown function (DUF2868) - - - 1.115e-201 637.0
YHH3_k127_7565637_1 GTP-binding protein, HSR1-related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 524.0
YHH3_k127_7565637_2 PFAM Glutamine amidotransferase class-I K01951 - 6.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 358.0
YHH3_k127_7565637_3 May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate K21420 - 2.3.2.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 342.0
YHH3_k127_7565637_4 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000005886 194.0
YHH3_k127_7588267_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001114 470.0
YHH3_k127_7588267_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane K05807 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 374.0
YHH3_k127_7588267_2 Universal stress protein K06149 - - 0.00000000000000000000000000000000000000000000000000000000000000001714 226.0
YHH3_k127_7588267_3 Protein of unknown function (DUF4019) - - - 0.0000000000000000000000000000000000000007331 151.0
YHH3_k127_7633937_0 PFAM Major facilitator superfamily - - - 7.706e-216 677.0
YHH3_k127_7633937_1 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002218 563.0
YHH3_k127_7633937_10 YCII-related domain K09780 - - 0.0000000000000000000000000000000000000000000000003089 176.0
YHH3_k127_7633937_2 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 484.0
YHH3_k127_7633937_3 Peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 383.0
YHH3_k127_7633937_4 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003503 331.0
YHH3_k127_7633937_5 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003612 311.0
YHH3_k127_7633937_6 PFAM Peptidase M22, glycoprotease K14742 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003338 293.0
YHH3_k127_7633937_7 Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000001319 259.0
YHH3_k127_7633937_8 probably involved in intracellular septation K06190 - - 0.000000000000000000000000000000000000000000000000000000000000000000000009365 247.0
YHH3_k127_7633937_9 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789,K14742 - 2.3.1.128 0.0000000000000000000000000000000000000000000000000000000000004517 215.0
YHH3_k127_7686031_0 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 466.0
YHH3_k127_7686031_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 306.0
YHH3_k127_7705890_0 CHASE2 - - - 2.623e-302 944.0
YHH3_k127_7705890_1 FecR protein - - - 1.151e-205 653.0
YHH3_k127_7705890_2 Response regulator containing a CheY-like receiver domain and an HD-GYP domain K07814 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003243 343.0
YHH3_k127_7722630_0 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 415.0
YHH3_k127_7722630_1 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004567 325.0
YHH3_k127_7722630_10 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000008051 76.0
YHH3_k127_7722630_11 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.00000000000003125 72.0
YHH3_k127_7722630_2 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000000000000005991 235.0
YHH3_k127_7722630_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.00000000000000000000000000000000000000000000000000000000000000000001279 234.0
YHH3_k127_7722630_4 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.0000000000000000000000000000000000000000000000000000000000000000001834 230.0
YHH3_k127_7722630_5 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.00000000000000000000000000000000000000000000000001125 181.0
YHH3_k127_7722630_6 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.00000000000000000000000000000000000000000000000006493 179.0
YHH3_k127_7722630_7 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000000000000000000000000001599 160.0
YHH3_k127_7722630_8 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000000000000000006253 152.0
YHH3_k127_7722630_9 Belongs to the universal ribosomal protein uL29 family K02904 - - 0.0000000000000000000009582 95.0
YHH3_k127_7784540_0 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 396.0
YHH3_k127_7784540_1 Binding-protein-dependent transport system inner membrane component K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000641 325.0
YHH3_k127_7784540_2 Protein of unknown function, DUF547 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 307.0
YHH3_k127_7784540_3 Phosphate ABC transporter substrate-binding protein, PhoT family K02040 - - 0.0000000000000000000000000000000000000000000000000000001811 204.0
YHH3_k127_7785918_0 Phosphate transport system permease protein K02038 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003806 534.0
YHH3_k127_7785918_1 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 484.0
YHH3_k127_7785918_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 361.0
YHH3_k127_7785918_3 Preprotein translocase SecG subunit K03075 - - 0.0000000000000000000000000001605 119.0
YHH3_k127_783571_0 Removes 5-oxoproline from various penultimate amino acid residues except L-proline K01304 GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564 3.4.19.3 0.00000000000000000000000000008398 127.0
YHH3_k127_783571_1 Evidence 4 Homologs of previously reported genes of - - - 0.000000001128 61.0
YHH3_k127_783571_2 Peptidase C14 caspase catalytic subunit p20 - - - 0.0000004776 58.0
YHH3_k127_783571_3 SMP-30/Gluconolaconase/LRE-like region K01053 - 3.1.1.17 0.000002243 59.0
YHH3_k127_783571_4 Phospholipase D. Active site motifs. - - - 0.0004888 47.0
YHH3_k127_7936436_0 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002619 602.0
YHH3_k127_7936436_1 MltA specific insert domain K08304 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 375.0
YHH3_k127_7936436_2 Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process K03981 - 5.3.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001012 342.0
YHH3_k127_7936436_3 Protein of unknown function (DUF3579) - - - 0.000000000000000000000000002333 112.0
YHH3_k127_7936945_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0 1514.0
YHH3_k127_7936945_1 PFAM aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 1.01e-205 645.0
YHH3_k127_7936945_2 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 587.0
YHH3_k127_7936945_3 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000972 528.0
YHH3_k127_7936945_4 Belongs to the argininosuccinate synthase family. Type 1 subfamily K01940 - 6.3.4.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 486.0
YHH3_k127_7936945_5 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K00058 - 1.1.1.399,1.1.1.95 0.00000000000000002085 83.0
YHH3_k127_7990142_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.0 1878.0
YHH3_k127_8003833_0 O-Antigen ligase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002356 593.0
YHH3_k127_8003833_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000486 604.0
YHH3_k127_8003833_2 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111 563.0
YHH3_k127_8003833_3 3-dehydroquinate synthase K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000001324 218.0
YHH3_k127_8003833_4 EF hand - - - 0.000000000000000003762 88.0
YHH3_k127_8008643_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 2.946e-257 800.0
YHH3_k127_8008643_1 Belongs to the GARS family K01945 - 6.3.4.13 6.241e-208 653.0
YHH3_k127_8008643_10 Putative peptidoglycan binding domain K21470 - - 0.0000000000000000000000000818 108.0
YHH3_k127_8008643_2 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines K05540 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000266 563.0
YHH3_k127_8008643_3 TIGRFAM Ubiquinone biosynthesis hydroxylase, UbiH UbiF VisC COQ6 K03185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003726 548.0
YHH3_k127_8008643_4 Cytochrome P460 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 321.0
YHH3_k127_8008643_5 Sel1-like repeats. K07126 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 302.0
YHH3_k127_8008643_6 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007273 253.0
YHH3_k127_8008643_7 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid K01069 - 3.1.2.6 0.000000000000000000000000000000000000000000000000004788 184.0
YHH3_k127_8008643_8 Belongs to the transcriptional regulatory Fis family K03557 - - 0.00000000000000000000000000000004127 126.0
YHH3_k127_8008643_9 protein localization to T-tubule K10380,K15503,K21440 - - 0.000000000000000000000000000000199 132.0
YHH3_k127_8011651_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.0 1043.0
YHH3_k127_8011651_1 PFAM aminotransferase, class I K00812 - 2.6.1.1 7.84e-213 666.0
YHH3_k127_8011651_2 Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 307.0
YHH3_k127_8011651_3 Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways K02403 - - 0.0000000000000000000000000000000000000000000133 166.0
YHH3_k127_8011651_4 COG0405 Gamma-glutamyltransferase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000002748 103.0
YHH3_k127_8027314_0 SMART ATPase, AAA type, core K06158 - - 3.221e-308 953.0
YHH3_k127_8027314_1 Domain of unknown function (DUF4139) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005041 601.0
YHH3_k127_8027314_2 Membrane - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007084 452.0
YHH3_k127_8027314_3 Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella K02406 - - 0.0000000000000000000000000000000000000000000000000001374 191.0
YHH3_k127_8045816_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 2.889e-218 678.0
YHH3_k127_8045816_1 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 2.706e-195 610.0
YHH3_k127_8045816_2 Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate K00931 - 2.7.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004146 604.0
YHH3_k127_8045816_3 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.00000000000000000000000000000000000000000000000000000002813 199.0
YHH3_k127_8045816_4 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.00000000000000000000000000000000000000000000003987 169.0
YHH3_k127_8046173_0 Belongs to the FAD-dependent oxidoreductase 2 family. FRD SDH subfamily K00239 GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016627,GO:0016999,GO:0017144,GO:0019752,GO:0022900,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045333,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0097159,GO:0098796,GO:0098797,GO:0098803,GO:1901265,GO:1901363,GO:1902494,GO:1990204 1.3.5.1,1.3.5.4 0.0 1054.0
YHH3_k127_8046173_1 Sodium:alanine symporter family K03310 - - 2.68e-247 770.0
YHH3_k127_8046173_2 ABC transporter K02065 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003671 455.0
YHH3_k127_8046173_3 nuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002543 353.0
YHH3_k127_8046173_4 Bacterial SH3 domain homologues K07184 - - 0.000000000000000000000000000000000000000000000000000000000000000001265 235.0
YHH3_k127_8046173_5 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 - - 0.0000000000000000000000000000000000000000000000005686 177.0
YHH3_k127_8046173_6 Succinate dehydrogenase, cytochrome b556 subunit K00241 - - 0.0000000000000000009136 91.0
YHH3_k127_8046173_7 Permease MlaE K02066 - - 0.0000000002353 61.0
YHH3_k127_8056589_0 PFAM Peptidase M48 - - - 2.814e-231 725.0
YHH3_k127_8056589_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01916,K01950 - 6.3.1.5,6.3.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008408 410.0
YHH3_k127_8056589_2 TIGRFAM DNA polymerase III, delta prime subunit K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 411.0
YHH3_k127_8056589_3 Sodium Bile acid symporter family K03453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009949 359.0
YHH3_k127_8056589_4 PALM domain, HD hydrolase domain and K09749 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 338.0
YHH3_k127_8056589_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 290.0
YHH3_k127_8056589_6 N-acetylmuramoyl-L-alanine amidase (Family 2) K03806 GO:0000270,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008745,GO:0009056,GO:0009057,GO:0009253,GO:0009254,GO:0009392,GO:0016020,GO:0016787,GO:0016810,GO:0016811,GO:0019867,GO:0030203,GO:0043167,GO:0043169,GO:0043170,GO:0046872,GO:0046914,GO:0061783,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000105 278.0
YHH3_k127_8056589_7 Glutathione S-transferase, N-terminal domain K00799,K11209 - 2.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000756 222.0
YHH3_k127_8056589_8 Domain of unknown function (DUF4399) - - - 0.00000000000000000000000000000000000009731 146.0
YHH3_k127_8060664_0 Belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family K03455 - - 4.929e-292 905.0
YHH3_k127_8060664_1 ROK family K00845,K00847,K00884 - 2.7.1.2,2.7.1.4,2.7.1.59 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 441.0
YHH3_k127_8060664_2 - - - - 0.000000000000000000000000000000000000000000000000248 177.0
YHH3_k127_8060664_3 SMART Diguanylate phosphodiesterase - - - 0.00000000000000000000000000000003502 127.0
YHH3_k127_8070908_0 Belongs to the peptidase S16 family - - - 0.0 1060.0
YHH3_k127_8070908_1 L COG3666 Transposase and inactivated derivatives - - - 8.871e-218 684.0
YHH3_k127_8158096_0 PFAM Metal-dependent hydrolase HDOD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 568.0
YHH3_k127_8158096_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001381 282.0
YHH3_k127_8158096_2 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits K03060 - 2.7.7.6 0.0009222 42.0
YHH3_k127_8195878_0 Diacylglycerol kinase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002358 475.0
YHH3_k127_8195878_1 lipid kinase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 449.0
YHH3_k127_8195878_2 Belongs to the CDP-alcohol phosphatidyltransferase class-I family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003257 329.0
YHH3_k127_8195878_3 PEP-CTERM motif - - - 0.0002089 49.0
YHH3_k127_8256737_0 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 1.262e-299 926.0
YHH3_k127_8256737_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005943 302.0
YHH3_k127_8256737_2 system, fructose subfamily IIA component K02821 - 2.7.1.194 0.000000000000000000000000000000000000000000000000006874 183.0
YHH3_k127_8256737_3 phosphocarrier HPr protein K11189 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000001472 140.0
YHH3_k127_8256737_4 Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine K00641 - 2.3.1.31 0.00000000001409 64.0
YHH3_k127_8279054_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 4.71e-265 820.0
YHH3_k127_8279054_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 3.6.3.14 1.013e-245 763.0
YHH3_k127_8279054_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003585 429.0
YHH3_k127_8279054_3 Type II secretion system (T2SS), protein E, N-terminal domain K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009899 386.0
YHH3_k127_8279054_4 Produces ATP from ADP in the presence of a proton gradient across the membrane K02114 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0045259,GO:0045261,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000000000000000000000000000000000000000000006415 199.0
YHH3_k127_8279117_0 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002923 407.0
YHH3_k127_8279117_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000115 211.0
YHH3_k127_8279117_2 Part of the ABC transporter complex PstSACB involved in phosphate import - - - 0.000000000000000000000000000000000000006229 151.0
YHH3_k127_8279117_3 - - - - 0.00000000000000000000000001809 109.0
YHH3_k127_8279117_4 long-chain fatty acid transporting porin activity K07267 - - 0.000000000000000000001571 102.0
YHH3_k127_8279117_5 - - - - 0.0000001027 61.0
YHH3_k127_8279588_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 GO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.4.2 1.209e-319 983.0
YHH3_k127_8279588_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 GO:0000015,GO:0000287,GO:0003674,GO:0003824,GO:0004634,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009986,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042802,GO:0042866,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494 4.2.1.11 3.911e-221 690.0
YHH3_k127_8279588_2 argininosuccinate lyase K01755 - 4.3.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003914 546.0
YHH3_k127_8279588_3 Fructosamine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004866 419.0
YHH3_k127_8304049_0 Belongs to the GPI family K01810 - 5.3.1.9 2.193e-273 848.0
YHH3_k127_8304049_1 Tetratricopeptide repeat - - - 2.053e-237 747.0
YHH3_k127_8304049_2 Belongs to the thiolase family K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 478.0
YHH3_k127_8304049_3 Lipoprotein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 417.0
YHH3_k127_8304049_4 - - - - 0.0000000000000000000000118 105.0
YHH3_k127_8311998_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 9.882e-254 794.0
YHH3_k127_8311998_1 Involved in the TonB-independent uptake of proteins K03641 - - 8.091e-212 665.0
YHH3_k127_8311998_10 TolA C-terminal K03646 - - 0.000000000000000000000000000000000000000000002426 170.0
YHH3_k127_8311998_11 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.0000000000000000000000000000000001083 134.0
YHH3_k127_8311998_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 543.0
YHH3_k127_8311998_3 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 372.0
YHH3_k127_8311998_4 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002903 350.0
YHH3_k127_8311998_5 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012 307.0
YHH3_k127_8311998_6 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001755 288.0
YHH3_k127_8311998_7 Belongs to the ompA family K03640 - - 0.00000000000000000000000000000000000000000000000000000000000000000003606 235.0
YHH3_k127_8311998_8 Yqey-like protein K09117 - - 0.0000000000000000000000000000000000000000000000000000000001744 206.0
YHH3_k127_8311998_9 Aldolase K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000000000000000000000000000000004311 203.0
YHH3_k127_8314728_0 protein synthesis factor, GTP-binding K06207 - - 0.0 1088.0
YHH3_k127_8314728_1 Ion channel - - - 0.00000000000000000000000000000000000000000000000000000000000002785 218.0
YHH3_k127_8314728_2 membrane - - - 0.000000000000000000000000000000000000000000000000000000127 200.0
YHH3_k127_8314728_3 Thioredoxin K07396 - - 0.0000000000000000000005716 96.0
YHH3_k127_8314728_4 Uncharacterized ArCR, COG1888 K09732 - - 0.00000000000000008308 82.0
YHH3_k127_8314902_0 -O-antigen - - - 1.335e-215 694.0
YHH3_k127_8314902_1 PFAM Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000064 298.0
YHH3_k127_8373407_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000007017 231.0
YHH3_k127_8373407_1 D-alanyl-D-alanine carboxypeptidase K17733 - - 0.000000000000000000000000000000000002463 141.0
YHH3_k127_8373407_3 A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a - - - 0.000000000000003557 79.0
YHH3_k127_8373407_4 - - - - 0.000000000005496 78.0
YHH3_k127_8373407_6 Pectate lyase superfamily protein - - - 0.0005261 46.0
YHH3_k127_8373407_7 - - - - 0.0005571 52.0
YHH3_k127_8407465_0 Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily K00817 - 2.6.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005893 557.0
YHH3_k127_8407465_1 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit K02500 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003478 482.0
YHH3_k127_8407465_10 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation K03117 - - 0.00000000000000000000000001935 113.0
YHH3_k127_8407465_11 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.0000000000000000000001115 100.0
YHH3_k127_8407465_2 TIGRFAM Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002931 442.0
YHH3_k127_8407465_3 Zinc-binding dehydrogenase K12957,K13979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 428.0
YHH3_k127_8407465_4 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides K03118 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002508 379.0
YHH3_k127_8407465_5 IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR K02501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003028 373.0
YHH3_k127_8407465_6 imidazoleglycerol-phosphate dehydratase K01693 - 4.2.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001129 362.0
YHH3_k127_8407465_7 Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP K01496,K11755 - 3.5.4.19,3.6.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000006469 238.0
YHH3_k127_8407465_8 HIT domain K02503 - - 0.000000000000000000000000000000000000000000000000000002212 193.0
YHH3_k127_8407465_9 phosphoribosyl-ATP diphosphatase activity K01523 - 3.6.1.31 0.0000000000000000000000000000000000000000000000001706 178.0
YHH3_k127_8412142_0 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 402.0
YHH3_k127_8412142_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000005787 295.0
YHH3_k127_8412142_2 Thioredoxin domain - - - 0.000000000000000000000000000000000000001028 148.0
YHH3_k127_8412142_3 Thaumatin family - GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0010033,GO:0042221,GO:0043207,GO:0050896,GO:0051704,GO:0051707 - 0.00007052 55.0
YHH3_k127_8473427_0 Resolvase domain - - - 1.529e-301 941.0
YHH3_k127_8473427_1 Integrase core domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002895 273.0
YHH3_k127_8473427_2 Winged helix-turn helix K13771 - - 0.00000000000000000000000000000000000000000000000002991 183.0
YHH3_k127_8476328_0 Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine K00013 GO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.23 1.494e-223 698.0
YHH3_k127_8476328_1 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001613 581.0
YHH3_k127_8476328_10 Transposase zinc-ribbon domain - - - 0.000000000000001113 76.0
YHH3_k127_8476328_2 SAICAR synthetase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 473.0
YHH3_k127_8476328_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000377 383.0
YHH3_k127_8476328_4 Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity K00765 - 2.4.2.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 379.0
YHH3_k127_8476328_5 tRNA rRNA methyltransferase, SpoU K03437 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003718 318.0
YHH3_k127_8476328_6 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000001247 248.0
YHH3_k127_8476328_7 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000000000000000000000000000000005708 213.0
YHH3_k127_8476328_8 - - - - 0.00000000000000000000000000000000000000009575 153.0
YHH3_k127_8476328_9 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000000000000000000000000000002664 126.0
YHH3_k127_8482253_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 1.147e-262 814.0
YHH3_k127_8482253_1 Sigma-54 interaction domain K07715 - - 2.368e-229 716.0
YHH3_k127_8482253_2 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007479 254.0
YHH3_k127_8482253_3 - - - - 0.000000000002844 67.0
YHH3_k127_8483071_0 Erf family - - - 0.000000000000000000000000000000000000016 152.0
YHH3_k127_8483071_1 to Bacteriophage phiYeO3-12 1.45 protein 1.45 SWALL Q9T140 (EMBL AJ251805) (157 aa) fasta scores E() 2.6e-06, 36.06 id in 122 aa, and to Escherichia coli O157 H7 - - - 0.00000000000000000000000000000000003274 139.0
YHH3_k127_8483071_2 Peptidase M15 - - - 0.0000000000000000000000000000001067 128.0
YHH3_k127_8483071_3 Protein of unknown function (DUF1064) - - - 0.00000000000000000000000002718 112.0
YHH3_k127_8483071_4 phage protein - - - 0.0000000000000000000000159 102.0
YHH3_k127_8483071_5 - - - - 0.0000000000002258 71.0
YHH3_k127_8483071_6 PFAM Low molecular weight phosphotyrosine protein phosphatase - - - 0.0000000008497 64.0
YHH3_k127_8483071_7 - - - - 0.00001726 51.0
YHH3_k127_8542822_0 PD-(D/E)XK nuclease superfamily K01144 - 3.1.11.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003886 465.0
YHH3_k127_8542822_1 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000931 346.0
YHH3_k127_8542822_2 Lysin motif K06194 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002294 330.0
YHH3_k127_8542822_3 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions K05524 - - 0.000000000000000000000000000000000000000000000000000000000004394 208.0
YHH3_k127_8558563_0 Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate K00381,K00392 - 1.8.1.2,1.8.7.1 1.41e-315 972.0
YHH3_k127_8558563_1 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00956 - 2.7.7.4 1.338e-231 721.0
YHH3_k127_8558563_2 adenylyltransferase, small subunit K00957 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 567.0
YHH3_k127_8558563_3 Bacterial regulatory helix-turn-helix protein, lysR family K13634 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002663 501.0
YHH3_k127_8558563_4 Reduction of activated sulfate into sulfite K00390 - 1.8.4.10,1.8.4.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 403.0
YHH3_k127_8558563_5 PFAM Uncharacterised conserved protein UCP030820 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003709 276.0
YHH3_k127_8558563_6 - - - - 0.0000000000000000000000000000004147 124.0
YHH3_k127_8558563_7 Sulfite exporter TauE/SafE K07090 - - 0.00000001557 57.0
YHH3_k127_8588079_0 Formate acetyltransferase K00656 - 2.3.1.54 0.0 1206.0
YHH3_k127_8588079_1 4Fe-4S single cluster domain K04069 - 1.97.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000001462 258.0
YHH3_k127_8588079_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003316 222.0
YHH3_k127_8674391_0 Competence protein ComEC Rec2 K02238 - - 0.0 1141.0
YHH3_k127_8674391_1 Enoyl-CoA hydratase isomerase K19640 - - 1.691e-288 894.0
YHH3_k127_8674391_2 Hydrogenase formation hypA family K04654 - - 2.161e-212 662.0
YHH3_k127_8674391_3 AIR synthase related protein, N-terminal domain K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009344 576.0
YHH3_k127_8674391_4 Succinylglutamate desuccinylase / Aspartoacylase family K06987 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000057 510.0
YHH3_k127_8674391_5 Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family K00569 - 2.1.1.67 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008376 297.0
YHH3_k127_8674391_6 RF-1 domain K15034 - - 0.00000000000000000000000000000000000000000000000000000000002085 208.0
YHH3_k127_8674391_7 L,D-transpeptidase catalytic domain - - - 0.0000000000000000000000000000000000000000000000359 172.0
YHH3_k127_8674391_8 PFAM Excinuclease ABC, C subunit domain protein K07461 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008296,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 - 0.00000000000000000000000005606 109.0
YHH3_k127_8674391_9 PFAM hydrogenase expression formation protein (HUPF HYPC) K04653 - - 0.0000000000000000000000007995 106.0
YHH3_k127_8706240_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 1.161e-318 987.0
YHH3_k127_8706240_1 Belongs to the 'phage' integrase family - - - 1.072e-226 708.0
YHH3_k127_8706240_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 7.125e-204 638.0
YHH3_k127_8706240_3 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 GO:0002097,GO:0002099,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016853,GO:0018130,GO:0019438,GO:0034404,GO:0034470,GO:0034641,GO:0034654,GO:0034660,GO:0042455,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046116,GO:0046483,GO:0051075,GO:0055086,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 542.0
YHH3_k127_8706240_4 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001965 295.0
YHH3_k127_8706240_5 Preprotein translocase subunit K03210 - - 0.0000000000000000000000000000000000000000000002004 171.0
YHH3_k127_8706240_6 Transcriptional regulator - - - 0.0000000000000000000000000000000008178 131.0
YHH3_k127_8706240_7 - - - - 0.00000002512 63.0
YHH3_k127_8732960_0 TonB-dependent receptor K16090 - - 1.323e-236 746.0
YHH3_k127_8732960_1 Iron-storage protein K03594 - 1.16.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003394 279.0
YHH3_k127_8732960_2 FecR protein - - - 0.000000000000000000000000000000000000000000000000002588 187.0
YHH3_k127_8732960_3 peptidase M24B, X-Pro dipeptidase aminopeptidase K01262 - 3.4.11.9 0.0000000000000000000000000000005404 122.0
YHH3_k127_8732960_4 Bacterial PH domain - - - 0.00000000000000000000000003674 113.0
YHH3_k127_8732960_5 - - - - 0.0000000000000000000000001112 110.0
YHH3_k127_8732960_6 2Fe-2S -binding K02192 - - 0.000000000000000000002363 94.0
YHH3_k127_8740042_0 TIGRFAM Type I secretion membrane fusion protein, HlyD K02022,K12537,K12542 - - 4.357e-205 646.0
YHH3_k127_8740042_1 TIGRFAM type I secretion outer membrane protein, TolC K12538 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011 604.0
YHH3_k127_8740042_2 - - - - 0.0000000000000000000000000000000000000000000001603 171.0
YHH3_k127_8740042_3 ABC transporter transmembrane region K12536 - - 0.00000000000000000000000000000000000000008929 152.0
YHH3_k127_8740042_4 - - - - 0.000000000000000000000000003271 111.0
YHH3_k127_8740042_5 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000003869 78.0
YHH3_k127_875825_0 DinB superfamily - - - 0.0 1267.0
YHH3_k127_875825_1 SNARE associated Golgi protein - - - 0.0 1147.0
YHH3_k127_875825_10 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006425 339.0
YHH3_k127_875825_11 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002127 268.0
YHH3_k127_875825_12 gag-polyprotein putative aspartyl protease K06985 - - 0.00000000000000000000000000000000000000000000000000000000000000114 222.0
YHH3_k127_875825_13 4TM region of pyridine nucleotide transhydrogenase, mitoch K00322,K00324 - 1.6.1.1,1.6.1.2 0.00000000000000000000000000000000000000000000000000000004312 196.0
YHH3_k127_875825_2 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 2.08e-260 806.0
YHH3_k127_875825_3 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.42 2.799e-239 743.0
YHH3_k127_875825_4 PFAM Alanine dehydrogenase PNT K00324 - 1.6.1.2 2.594e-201 631.0
YHH3_k127_875825_5 PFAM aminotransferase, class I K00842,K14155 - 4.4.1.8 2.64e-197 620.0
YHH3_k127_875825_6 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 6.572e-194 609.0
YHH3_k127_875825_7 Putative diguanylate phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003935 548.0
YHH3_k127_875825_8 Radical SAM superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006074 473.0
YHH3_k127_875825_9 Protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 415.0
YHH3_k127_876918_0 HI0933-like protein K07007 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004912 591.0
YHH3_k127_876918_1 Belongs to the AB hydrolase superfamily. MetX family K00641 - 2.3.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 435.0
YHH3_k127_876918_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002361 435.0
YHH3_k127_876918_3 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009579 296.0
YHH3_k127_876918_5 - - - - 0.00000000000002481 82.0
YHH3_k127_876918_6 Protein of unknown function (DUF2909) - - - 0.00000000000004926 74.0
YHH3_k127_876918_7 PFAM Phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.00001098 48.0
YHH3_k127_876918_8 COG2801 Transposase and inactivated derivatives K07497 - - 0.0004566 43.0
YHH3_k127_8773968_0 SMART ATPase, AAA type, core K09691 - - 4.048e-195 615.0
YHH3_k127_8773968_1 Glycosyltransferase like family 2 K20444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005952 599.0
YHH3_k127_8773968_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 511.0
YHH3_k127_8773968_3 Transport permease protein K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009565 411.0
YHH3_k127_8773968_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000117 223.0
YHH3_k127_8773968_5 LmbE family - - - 0.0000000000000000000000000000000000006858 149.0
YHH3_k127_8773968_6 Methyltransferase FkbM domain - - - 0.000000000000000000000000002331 129.0
YHH3_k127_8784269_0 Biotin lipoyl attachment K01941 - 6.3.4.6 0.0 2065.0
YHH3_k127_8784269_1 PFAM Multicopper oxidase, type K04753,K08100,K14588 - 1.3.3.5 3.797e-265 824.0
YHH3_k127_8784269_2 amino acid - - - 4.75e-255 793.0
YHH3_k127_8784269_3 Domain of unknown function (DUF1989) K09967 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002616 421.0
YHH3_k127_8784269_4 Domain of unknown function (DUF1989) K09967 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 404.0
YHH3_k127_8784269_5 DnaJ molecular chaperone homology domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007917 404.0
YHH3_k127_8784269_6 OST-HTH/LOTUS domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001069 400.0
YHH3_k127_8784269_7 PFAM LOR SDH bifunctional enzyme conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000929 278.0
YHH3_k127_8784269_8 Multicopper oxidase type - - - 0.000000000000000000000000000000000000000000000000000000000000001129 221.0
YHH3_k127_8796044_0 pyruvate-flavodoxin oxidoreductase activity - - - 4.502e-304 943.0
YHH3_k127_8796044_2 - - - - 0.0000000000000000000000000000000000000000000000000000002158 213.0
YHH3_k127_885586_0 MMPL family K07003 - - 0.0 1105.0
YHH3_k127_885586_1 Domain of unknown function (DUF3463) - - - 3.016e-224 698.0
YHH3_k127_885586_2 glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 520.0
YHH3_k127_885586_3 MlaC protein K07323 - - 0.0000000000000000000000000000000000000000000000000000003834 200.0
YHH3_k127_885586_4 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000000000001648 128.0
YHH3_k127_8859477_0 DNA recombination-mediator protein A K04096 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009239 556.0
YHH3_k127_8859477_1 Lysin motif - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 503.0
YHH3_k127_8859477_2 Belongs to the Smg family K03747 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000811 247.0
YHH3_k127_8859477_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.000000000000000000000000000000000000000000000000000000000000000000000001544 250.0
YHH3_k127_891712_0 PFAM Peptidase S11, D-alanyl-D-alanine carboxypeptidase A K01286,K07258 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000876 515.0
YHH3_k127_891712_1 Protein of unknown function (DUF1499) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001762 283.0
YHH3_k127_891712_2 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000118 267.0
YHH3_k127_891712_3 Glucose / Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000007587 182.0
YHH3_k127_891712_4 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000264 106.0
YHH3_k127_8927383_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 GO:0003674,GO:0003824,GO:0004148,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006464,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0018130,GO:0018335,GO:0019362,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043543,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045254,GO:0046390,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0106077,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204,GO:1990234 1.8.1.4 2.495e-235 735.0
YHH3_k127_8927383_1 PFAM Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000128 285.0
YHH3_k127_8927383_2 Polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000207 214.0
YHH3_k127_8927383_3 Glutathione S-transferase K00799 - 2.5.1.18 0.00000000000000000000000000000000000000000004609 170.0
YHH3_k127_8927383_4 - - - - 0.0000000000000000000000000000000000000000008119 162.0
YHH3_k127_8927383_5 Cytochrome P450 - - - 0.0000000000000000000000000000002815 125.0
YHH3_k127_8927383_6 ubiE/COQ5 methyltransferase family - - - 0.00000000001184 66.0
YHH3_k127_8927383_7 ubiE/COQ5 methyltransferase family - - - 0.00000000129 59.0
YHH3_k127_8927383_8 Nodulation protein S (NodS) - - - 0.0000008843 53.0
YHH3_k127_8934414_0 Uncharacterized protein conserved in bacteria (DUF2309) K09822 - - 0.0 1598.0
YHH3_k127_8934414_1 Proton-conducting membrane transporter K00342 - 1.6.5.3 3.294e-245 764.0
YHH3_k127_8934414_2 Sulfate permease family - - - 7.391e-204 643.0
YHH3_k127_8934414_3 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 528.0
YHH3_k127_8934414_4 Phosphorylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000005924 224.0
YHH3_k127_8934414_5 Universal stress protein family - - - 0.00000000000000000000000000001806 122.0
YHH3_k127_9002931_0 PFAM Integrase catalytic - - - 1.314e-307 945.0
YHH3_k127_9002931_1 Belongs to the Orn Lys Arg decarboxylase class-II family K01581,K01586 - 4.1.1.17,4.1.1.20 4.741e-202 634.0
YHH3_k127_9002931_2 COG0501 Zn-dependent protease with chaperone function K03799 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005928 562.0
YHH3_k127_9002931_3 SMART ATPase, AAA type, core - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008517 481.0
YHH3_k127_9002931_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 365.0
YHH3_k127_9002931_5 Diguanylate cyclase K13924 - 2.1.1.80,3.1.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001903 318.0
YHH3_k127_9002931_6 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000844 279.0
YHH3_k127_9002931_7 PAS fold - - - 0.0000000000000000000000000000000000000001206 175.0
YHH3_k127_9002931_8 Tetratricopeptide repeat - - - 0.000000000000005091 80.0
YHH3_k127_9009888_0 PFAM Peptidase M16 K07263 - - 2.55e-222 699.0
YHH3_k127_9009888_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004494 517.0
YHH3_k127_9009888_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes K03089 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002268 426.0
YHH3_k127_9009888_3 Part of the ABC transporter FtsEX involved in cellular division K09811 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003845 379.0
YHH3_k127_9009888_4 TIGRFAM Cell division ATP-binding protein FtsE K09812 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001053 340.0
YHH3_k127_9009888_5 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001771 267.0
YHH3_k127_9009888_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000011 250.0
YHH3_k127_9009888_7 - - - - 0.000000000000000000000000000000000000000000000000001279 187.0
YHH3_k127_9009888_8 - - - - 0.00000000000000000000000000000000000005749 150.0
YHH3_k127_9020777_0 malic enzyme K00029 - 1.1.1.40 1.632e-284 880.0
YHH3_k127_9020777_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components K03106 - 3.6.5.4 1.845e-251 780.0
YHH3_k127_9020777_10 Belongs to the 5-formyltetrahydrofolate cyclo-ligase family K01934 - 6.3.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001488 269.0
YHH3_k127_9020777_11 PTS IIA-like nitrogen-regulatory protein PtsN K02806 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009104 259.0
YHH3_k127_9020777_12 AsmA family K07289 - - 0.000000000000000000000000000000000000000000000000000000000000000000004423 251.0
YHH3_k127_9020777_13 COG2346, Truncated hemoglobins K06886 - - 0.00000000000000000000000000000000000000000000000000000000000000000002556 234.0
YHH3_k127_9020777_14 DNA polymerase III (Chi subunit) K02339 - 2.7.7.7 0.0000000000000000000000000000000000000000000002289 171.0
YHH3_k127_9020777_15 Sigma 54 modulation protein K05808 - - 0.00000000000000000000000000000000000000000000578 165.0
YHH3_k127_9020777_16 PFAM Modulator of Rho-dependent transcription termination K19000 - - 0.00000000000000000000000000001415 119.0
YHH3_k127_9020777_2 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0016787,GO:0019538,GO:0019904,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0097718,GO:0140096,GO:1901564 3.4.11.1 4.102e-240 749.0
YHH3_k127_9020777_3 TIGRFAM Diguanylate cyclase - - - 2.489e-206 651.0
YHH3_k127_9020777_4 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002213 483.0
YHH3_k127_9020777_5 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000205 483.0
YHH3_k127_9020777_6 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 471.0
YHH3_k127_9020777_7 PFAM Cytochrome c assembly protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003944 414.0
YHH3_k127_9020777_8 TIGRFAM Phosphoserine phosphatase SerB K01079 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004823 405.0
YHH3_k127_9020777_9 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002007 350.0
YHH3_k127_9065980_0 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02394 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006005 582.0
YHH3_k127_9065980_1 Belongs to the flagella basal body rod proteins family K02392 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002368 471.0
YHH3_k127_9065980_2 Flagellar basal body rod protein K02390 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003782 406.0
YHH3_k127_9065980_3 Belongs to the flagella basal body rod proteins family K02391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001287 364.0
YHH3_k127_9065980_4 Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation K02393 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 317.0
YHH3_k127_9065980_5 Rod binding protein K02395 - - 0.00000000000000000000000000000000000000004675 156.0
YHH3_k127_9083770_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 1.331e-310 956.0
YHH3_k127_9083770_1 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004481 395.0
YHH3_k127_9083770_2 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.000000000000000000000000000000000000000000000000003517 182.0
YHH3_k127_9083770_3 Transposase zinc-ribbon domain - - - 0.000000004514 57.0
YHH3_k127_9101550_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis K00412 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 509.0
YHH3_k127_9101550_1 Glutathione S-transferase, N-terminal domain K03599 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482 368.0
YHH3_k127_9101550_2 Cytochrome C1 family K00413 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005879 359.0
YHH3_k127_9101550_3 stringent starvation protein B K03600 - - 0.000000000000000000000000000000000001591 143.0
YHH3_k127_9101550_4 - - - - 0.0000004408 51.0
YHH3_k127_9136121_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0 1128.0
YHH3_k127_9136121_1 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004007 557.0
YHH3_k127_9136121_2 Glycosyl transferase family 21 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002733 501.0
YHH3_k127_9136121_3 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 361.0
YHH3_k127_9136121_4 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008285 246.0
YHH3_k127_9136121_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000021 238.0
YHH3_k127_9136121_6 SpoIIAA-like - - - 0.000000000000000000000000000000000000000000000000000000000004744 211.0
YHH3_k127_9136121_7 PFAM Invasion gene expression up-regulator, SirB - - - 0.000000000000000000000000000000000000000000000000000000004984 200.0
YHH3_k127_9136121_8 Protein of unknown function (DUF465) K09794 - - 0.00000000000000000000000000004078 117.0
YHH3_k127_9157564_0 FtsX-like permease family K02004 - - 0.0 1146.0
YHH3_k127_9157564_1 Lipocalin-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002303 569.0
YHH3_k127_9157564_2 ABC transporter K06147 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007583 422.0
YHH3_k127_9157564_3 ABC transporter K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000812 344.0
YHH3_k127_9157564_4 DNA/RNA non-specific endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009015 330.0
YHH3_k127_9157564_5 PPIC-type PPIASE domain K03769 - 5.2.1.8 0.00000000000000000000000000000000000000000000000005903 178.0
YHH3_k127_9157564_6 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form - - - 0.0000000000000000001991 101.0
YHH3_k127_9207939_0 BT1 family - - - 9.314e-292 902.0
YHH3_k127_9207939_1 Protein conserved in bacteria - - - 2.102e-240 762.0
YHH3_k127_9207939_2 Belongs to the peptidase S1C family K04691,K04772 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007962 569.0
YHH3_k127_9207939_3 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 GO:0000003,GO:0000096,GO:0000097,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009507,GO:0009532,GO:0009536,GO:0009566,GO:0009567,GO:0009570,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016049,GO:0016053,GO:0016740,GO:0016765,GO:0019344,GO:0019752,GO:0019842,GO:0019953,GO:0022414,GO:0030154,GO:0030170,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0036094,GO:0040007,GO:0042221,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046394,GO:0046686,GO:0048037,GO:0048046,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050662,GO:0050896,GO:0051704,GO:0060560,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001481 516.0
YHH3_k127_9207939_4 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002034 473.0
YHH3_k127_9207939_5 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005465 403.0
YHH3_k127_9207939_6 Protein of unknown function (DUF1318) K09978 - - 0.00000000000000000000000000000000000000000000000000000001262 200.0
YHH3_k127_9207939_7 MltA specific insert domain K08304 - - 0.0000000000000000000000000000000000000000000000000003956 189.0
YHH3_k127_9207939_8 Competence protein ComEA K02237 - - 0.000000000000000000000000003401 113.0
YHH3_k127_9207939_9 - - - - 0.00000000009285 64.0
YHH3_k127_9243353_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 392.0
YHH3_k127_9243353_1 Domain of unknown function (DUF4202) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008331 273.0
YHH3_k127_9243353_2 PFAM Anion-transporting ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000001441 231.0
YHH3_k127_9243353_3 - - - - 0.0000000000000000000000000000000000000000000000000000000000006959 224.0
YHH3_k127_9243353_4 Belongs to the BolA IbaG family K05527 - - 0.00000000000000000000000000000000000000000000002514 171.0
YHH3_k127_9243353_5 Anion-transporting ATPase K01551 - 3.6.3.16 0.000000000000000000000000000000000728 142.0
YHH3_k127_9249139_0 Circularly permuted ATP-grasp type 2 - - - 2.397e-264 819.0
YHH3_k127_9249139_1 Acts as a magnesium transporter - - - 2.115e-227 711.0
YHH3_k127_9249139_10 AMMECR1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001497 272.0
YHH3_k127_9249139_11 Protein of unknown function (DUF3617) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000679 269.0
YHH3_k127_9249139_12 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000002282 246.0
YHH3_k127_9249139_13 Oxygen tolerance - - - 0.0000000000000000000000000000000000000000000000000000001674 205.0
YHH3_k127_9249139_14 Domain of unknown function (DUF4381) - - - 0.0000000000000000000000000000285 122.0
YHH3_k127_9249139_15 Radical SAM superfamily K04069 - 1.97.1.4 0.000000000000000000000000004223 112.0
YHH3_k127_9249139_16 Radical SAM superfamily K04069 - 1.97.1.4 0.0000000003092 62.0
YHH3_k127_9249139_2 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 2.94e-224 699.0
YHH3_k127_9249139_3 A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005919 561.0
YHH3_k127_9249139_4 ATPase family associated with various cellular activities (AAA) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003819 435.0
YHH3_k127_9249139_5 PFAM UPF0103 Mediator of ErbB2-driven cell motility K06990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004169 401.0
YHH3_k127_9249139_6 protein conserved in bacteria - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002325 396.0
YHH3_k127_9249139_7 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002899 386.0
YHH3_k127_9249139_8 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 343.0
YHH3_k127_9249139_9 Glutamine synthetase, beta-Grasp domain K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009738 322.0
YHH3_k127_9252919_0 Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide K04656 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 424.0
YHH3_k127_9252919_1 CobW/HypB/UreG, nucleotide-binding domain K04652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 403.0
YHH3_k127_9252919_2 Urate oxidase N-terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000433 245.0
YHH3_k127_9252919_3 HupE UreJ protein K03192 - - 0.0000000000000000000000000000000000000000000000000000000000775 210.0
YHH3_k127_9252919_4 hydrogenase maturation protease - - - 0.000000000000000000000000000000000000000000000000000000004272 203.0
YHH3_k127_9252919_5 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.000000000000000000000000000000000000003496 148.0
YHH3_k127_9252919_6 Probably plays a role in a hydrogenase nickel cofactor insertion step K04651 - - 0.000000000000000000000000000000000000005568 149.0
YHH3_k127_9252919_7 Protein of unknown function (DUF2905) - - - 0.00000000000000000000000009721 108.0
YHH3_k127_9257035_0 Thymidine phosphorylase K00758 - 2.4.2.4 5.908e-259 804.0
YHH3_k127_9257035_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 1.733e-205 645.0
YHH3_k127_9257035_10 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000005887 231.0
YHH3_k127_9257035_11 Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase K09862 - - 0.000000000000000000001663 96.0
YHH3_k127_9257035_2 Belongs to the Nudix hydrolase family K03574 - 3.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 441.0
YHH3_k127_9257035_3 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007208 437.0
YHH3_k127_9257035_4 Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity K18778 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 396.0
YHH3_k127_9257035_5 Belongs to the ribose-phosphate pyrophosphokinase family K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 358.0
YHH3_k127_9257035_6 Type II secretion system K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001319 314.0
YHH3_k127_9257035_7 deaminase zinc-binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 298.0
YHH3_k127_9257035_8 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000007636 253.0
YHH3_k127_9257035_9 Protein of unknown function (DUF938) - - - 0.00000000000000000000000000000000000000000000000000000000000000000005036 233.0
YHH3_k127_9292442_0 Belongs to the GSP D family K02453 - - 2.018e-282 886.0
YHH3_k127_9292442_1 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 532.0
YHH3_k127_9292442_10 PFAM type II secretion system protein G K02456 - - 0.000000000000000000000000000000000000000000000000000000000001768 210.0
YHH3_k127_9292442_11 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.000000000000000000000000000000000000003906 147.0
YHH3_k127_9292442_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 480.0
YHH3_k127_9292442_3 type II secretion system protein E K02454 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005636 428.0
YHH3_k127_9292442_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009729 291.0
YHH3_k127_9292442_5 TIGRFAM Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB K07657 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001221 247.0
YHH3_k127_9292442_6 Prokaryotic N-terminal methylation motif K02456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004187 244.0
YHH3_k127_9292442_7 carbon utilization - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003598 243.0
YHH3_k127_9292442_8 Type II secretory pathway, pseudopilin - - - 0.000000000000000000000000000000000000000000000000000000000000000001005 233.0
YHH3_k127_9292442_9 - - - - 0.0000000000000000000000000000000000000000000000000000000000005621 215.0
YHH3_k127_9296993_0 COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog - - - 0.0003391 54.0
YHH3_k127_9307900_0 FtsX-like permease family K02004 - - 2.262e-200 629.0
YHH3_k127_9307900_1 ABC transporter K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006064 353.0
YHH3_k127_9307900_2 HlyD family secretion protein K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 319.0
YHH3_k127_9338075_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573 - - 0.0 1166.0
YHH3_k127_9338075_1 Arginyl-tRNA synthetase K01887 - 6.1.1.19 9.531e-304 940.0
YHH3_k127_9338075_10 Tyrosine phosphatase family - - - 0.000000000000000000000000000000000001253 142.0
YHH3_k127_9338075_2 Belongs to the DEAD box helicase family K05591 GO:0000339,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0060255,GO:0065007,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 3.6.4.13 1.317e-248 773.0
YHH3_k127_9338075_3 Sodium/calcium exchanger protein K07301 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001684 499.0
YHH3_k127_9338075_4 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005039 387.0
YHH3_k127_9338075_5 glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009464 368.0
YHH3_k127_9338075_6 Thiol disulfide interchange protein K03673 - - 0.0000000000000000000000000000000000000000000000000000000000000000001407 237.0
YHH3_k127_9338075_7 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.00000000000000000000000000000000000000000000000000000000000000001204 228.0
YHH3_k127_9338075_8 Sporulation related domain - - - 0.000000000000000000000000000000000000000000000000001159 191.0
YHH3_k127_9338075_9 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000002544 158.0
YHH3_k127_9343777_0 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000999 576.0
YHH3_k127_9343777_1 Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine cysteine desulfurase (IscS) system K14058 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 525.0
YHH3_k127_9343777_2 Tim44 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 345.0
YHH3_k127_9343777_3 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001186 269.0
YHH3_k127_9343777_4 Dioxygenase K00449 - 1.13.11.3 0.000000000000000000000000000000000000000000000000000000000000000000000005392 250.0
YHH3_k127_9343777_5 PFAM Smr protein MutS2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000001328 234.0
YHH3_k127_9343777_6 Cytochrome c, class I - - - 0.000000000000000000000000000000000000000000000000000000000000000001149 230.0
YHH3_k127_9343777_7 PFAM Blue (type 1) copper domain - - - 0.00000000000000000000000000000000000000000000000000001873 192.0
YHH3_k127_9343777_8 Prokaryotic dksA/traR C4-type zinc finger - - - 0.000000000000000000000000000000000000000000000000003724 183.0
YHH3_k127_9343777_9 Protein of Unknown function (DUF2784) - - - 0.00000000000000000000000000000000000000000000002105 173.0
YHH3_k127_9418653_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1547.0
YHH3_k127_9418653_1 Response regulator receiver - - - 3.747e-232 729.0
YHH3_k127_9418653_10 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000000000000000000000000000000000000000003286 237.0
YHH3_k127_9418653_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 5.839e-230 719.0
YHH3_k127_9418653_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. Glycine N-methyltransferase family K18896 - 2.1.1.156 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003746 483.0
YHH3_k127_9418653_4 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000415 469.0
YHH3_k127_9418653_5 PFAM Methyltransferase type 11 K05928,K18897 - 2.1.1.157,2.1.1.95 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002341 438.0
YHH3_k127_9418653_6 UBA THIF-type NAD FAD binding K21029 - 2.7.7.80 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000234 425.0
YHH3_k127_9418653_7 Peptidase family M23 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313 301.0
YHH3_k127_9418653_8 Histidine kinase-like ATPases - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001817 280.0
YHH3_k127_9418653_9 Bacterial regulatory proteins, tetR family K05501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000047 280.0
YHH3_k127_9445541_0 Signal transduction histidine kinase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004177 590.0
YHH3_k127_9445541_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 578.0
YHH3_k127_9445541_2 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 572.0
YHH3_k127_9464615_0 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction K03147 - 4.1.99.17 0.0 1158.0
YHH3_k127_9464615_1 ATPase, P-type (transporting), HAD superfamily, subfamily IC - - - 0.0 1094.0
YHH3_k127_9464615_2 TIGRFAM type I secretion outer membrane protein, TolC K12340 - - 4.079e-215 674.0
YHH3_k127_9464615_3 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004751 469.0
YHH3_k127_9464615_4 Ribosomal RNA adenine dimethylase K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 344.0
YHH3_k127_9464615_5 Rhodanese Homology Domain - - - 0.000000000000000000000000000000000000000000000000000000000000009822 218.0
YHH3_k127_9464615_6 Belongs to the pseudouridine synthase RsuA family K06182 - 5.4.99.21 0.0000000000000000000000000000000000000000000000398 171.0
YHH3_k127_9464615_8 - - - - 0.00002419 46.0
YHH3_k127_9488100_0 MacB-like periplasmic core domain K02004 - - 6.088e-210 657.0
YHH3_k127_9488100_1 MacB-like periplasmic core domain K02004 - - 2.619e-196 617.0
YHH3_k127_9488100_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000395 535.0
YHH3_k127_9488100_3 pfam abc K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 386.0
YHH3_k127_9488100_4 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346,K03502 GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904 2.7.7.7 0.00000000000000000000000000006975 117.0
YHH3_k127_9489735_0 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 2.266e-200 629.0
YHH3_k127_9489735_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001026 418.0
YHH3_k127_9489735_2 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003939 364.0
YHH3_k127_9489735_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002381 344.0
YHH3_k127_9489735_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007112 308.0
YHH3_k127_9489735_5 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000384 239.0
YHH3_k127_9605865_0 E3 Ubiquitin ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001838 356.0
YHH3_k127_9605865_1 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000152 280.0
YHH3_k127_9605865_2 Protein of unknown function VcgC/VcgE (DUF2780) - - - 0.000000000000000000000000000000000000000000000000000000000003782 214.0
YHH3_k127_9605865_3 - - - - 0.000000000000000000000000001034 114.0
YHH3_k127_9651894_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 1.181e-273 842.0
YHH3_k127_9651894_1 PFAM Glycosyl transferase, family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001273 607.0
YHH3_k127_9651894_10 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001404 247.0
YHH3_k127_9651894_11 Belongs to the ArsC family K00537 - 1.20.4.1 0.000000000000000000000000000000000000000000000000000000000000004444 218.0
YHH3_k127_9651894_12 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K00058 - 1.1.1.399,1.1.1.95 0.0000000000000000000000000000000000000000000000000000000000307 206.0
YHH3_k127_9651894_13 Domain of unknown function (DUF2024) - - - 0.000000000000000000000000000000000000000000000002501 173.0
YHH3_k127_9651894_14 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.0000000000000000000000000000000000000000000001447 170.0
YHH3_k127_9651894_2 O-Antigen ligase K02847 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 537.0
YHH3_k127_9651894_3 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000508 516.0
YHH3_k127_9651894_4 Methyltransferase FkbM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003437 509.0
YHH3_k127_9651894_5 HpcH/HpaI aldolase/citrate lyase family K01630 - 4.1.2.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 501.0
YHH3_k127_9651894_6 Cytidylyltransferase K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 484.0
YHH3_k127_9651894_7 Glycosyltransferase Family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003096 437.0
YHH3_k127_9651894_8 invasion associated locus B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 336.0
YHH3_k127_9651894_9 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 320.0
YHH3_k127_9661013_0 PFAM Metal-dependent hydrolase HDOD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001 389.0
YHH3_k127_9661013_1 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.0000000000000000000000000000000000000000000000000000000000001237 216.0
YHH3_k127_9661013_2 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000000001941 196.0
YHH3_k127_9661013_3 Binds single-stranded DNA at the primosome assembly site (PAS) K02686 - - 0.0000000000000000000000000000003087 125.0
YHH3_k127_9661013_4 Domain of unknown function (DUF4124) - - - 0.000000000000000000000000005609 117.0
YHH3_k127_9661013_5 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000001808 94.0
YHH3_k127_968238_0 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000517 415.0
YHH3_k127_968238_1 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007844 418.0
YHH3_k127_968238_2 Specifically methylates the N7 position of guanine in position 527 of 16S rRNA K03501 - 2.1.1.170 0.0000000000000000000000000002589 117.0
YHH3_k127_968238_3 Trm112p-like protein K09791 - - 0.000000000000000000000001184 103.0
YHH3_k127_9692662_0 GMC oxidoreductase K03333 - 1.1.3.6 0.0 1195.0
YHH3_k127_9692662_1 Catalyzes cross-linking of the peptidoglycan cell wall at the division septum K03587 - 3.4.16.4 4.791e-195 616.0
YHH3_k127_9692662_2 PFAM Peptidase S1 S6, chymotrypsin Hap K08070 - 1.3.1.74 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004522 561.0
YHH3_k127_9692662_3 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 - 2.1.1.199 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 472.0
YHH3_k127_9692662_4 endonuclease III K01247 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 303.0
YHH3_k127_9692662_5 Belongs to the MraZ family K03925 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009302 258.0
YHH3_k127_9692662_6 Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic K03586 - - 0.000000000000000000000003252 105.0
YHH3_k127_9694216_0 HemY protein N-terminus K02498 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 560.0
YHH3_k127_9694216_1 Oxidoreductase FAD-binding domain K00523 - 1.17.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002308 547.0
YHH3_k127_9694216_2 HemX, putative uroporphyrinogen-III C-methyltransferase K02496,K13543 - 2.1.1.107,4.2.1.75 0.0000000000000000000000000000000000000000000000000000000000000009692 231.0
YHH3_k127_9694216_3 PFAM NAD-dependent epimerase dehydratase - - - 0.000000000000000000000000000000000000000004846 156.0
YHH3_k127_971513_0 PFAM aminotransferase, class I K00652 - 2.3.1.47 1.238e-219 685.0
YHH3_k127_971513_1 ABC transporter K02021,K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003518 388.0
YHH3_k127_9776959_0 chain 5 L K00341 - 1.6.5.3 1.372e-300 926.0
YHH3_k127_9776959_1 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002752 306.0
YHH3_k127_9776959_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 286.0
YHH3_k127_9776959_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000000000000000000922 175.0
YHH3_k127_979674_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.0 1408.0
YHH3_k127_979674_1 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008974 606.0
YHH3_k127_9933467_0 TIGRFAM phosphate binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 551.0
YHH3_k127_9933467_1 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 503.0
YHH3_k127_9933467_2 Binding-protein-dependent transport system inner membrane component K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 468.0