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Overview

ID MAG04615
Name YYD1_bin.1
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Bacteroidota
Class Bacteroidia
Order Chitinophagales
Family Saprospiraceae
Genus Opimibacter
Species
Assembly information
Completeness (%) 88.06
Contamination (%) 2.61
GC content (%) 45.0
N50 (bp) 5,045
Genome size (bp) 3,635,598

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes3194

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1002306_0 Domain of unknown function DUF11 - - - 0.00000000000000001025 99.0
YYD1_k127_1002306_1 FlgD Ig-like domain K21449 - - 0.000000156 65.0
YYD1_k127_1002306_2 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.000002034 59.0
YYD1_k127_1010880_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296,K18138 - - 0.0 1240.0
YYD1_k127_1010880_1 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 408.0
YYD1_k127_1010880_2 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002479 359.0
YYD1_k127_1010880_3 diphosphomevalonate decarboxylase K01597 - 4.1.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 334.0
YYD1_k127_1010880_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005901 322.0
YYD1_k127_1010880_5 Belongs to the serpin family K13963 - - 0.0000000000000000000000000000000000000000000000000000000003052 218.0
YYD1_k127_1010880_6 Domain of unknown function (DUF4294) - - - 0.0000000000000000000000000000000000000000000000818 175.0
YYD1_k127_1010880_7 Ribosomal protein S23 - - - 0.00000000000000000000000000000000000001725 147.0
YYD1_k127_1010880_8 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000006974 145.0
YYD1_k127_1010880_9 ASPIC and UnbV - - - 0.00000000000659 67.0
YYD1_k127_1031863_0 SnoaL-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009471 563.0
YYD1_k127_1031863_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003907 490.0
YYD1_k127_1031863_2 Signal transduction histidine kinase, subgroup 1, dimerisation phosphoacceptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002144 366.0
YYD1_k127_1034719_0 PFAM Tetratricopeptide - - - 4.708e-237 768.0
YYD1_k127_1034719_1 Protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005466 256.0
YYD1_k127_1034719_2 Protein of unknown function, DUF481 - - - 0.0000000000000000000000000000005154 135.0
YYD1_k127_1062130_0 Organic solvent tolerance protein OstA - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 455.0
YYD1_k127_1062130_1 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000001687 243.0
YYD1_k127_1073690_0 Belongs to the BshC family K22136 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003983 460.0
YYD1_k127_1073690_1 Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA K01963 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008132 398.0
YYD1_k127_1073690_2 PFAM PKD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001836 282.0
YYD1_k127_1073690_3 BNR Asp-box repeat - - - 0.0000000000000000000000000000000000000000000000000000000000001347 216.0
YYD1_k127_1074657_0 PFAM ASPIC and UnbV - - - 1.419e-269 869.0
YYD1_k127_1074657_1 chelatase, subunit chli K07391 - - 3.123e-196 618.0
YYD1_k127_1074657_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006518 323.0
YYD1_k127_1074657_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000001573 224.0
YYD1_k127_1074657_4 surface antigen - - - 0.0000000000000000000000000000000000000000003035 183.0
YYD1_k127_1074657_5 surface antigen - - - 0.00000000000000000000000000000000129 151.0
YYD1_k127_1074657_6 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.00004758 57.0
YYD1_k127_1102975_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775,K01929 - 5.1.1.1,6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008469 601.0
YYD1_k127_1102975_1 PPIC-type PPIASE domain K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001526 481.0
YYD1_k127_1102975_2 Protein of unknown function (DUF2480) - - - 0.00000000000000000000000000000000000000000000000000000000005171 209.0
YYD1_k127_1123534_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002087 410.0
YYD1_k127_1123534_1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile K01241 - 3.2.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 372.0
YYD1_k127_1123534_2 alpha beta - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 358.0
YYD1_k127_1123534_3 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000001494 217.0
YYD1_k127_1123534_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000000007568 187.0
YYD1_k127_1123534_5 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.000000000000000000000000001803 115.0
YYD1_k127_1123534_6 Protein conserved in bacteria - - - 0.00000000000000000000000005174 115.0
YYD1_k127_1123534_7 SWIM zinc finger - - - 0.0000000000001774 77.0
YYD1_k127_1123534_8 PFAM SMP-30 Gluconolaconase - - - 0.0000000000002341 76.0
YYD1_k127_1129530_0 K+ potassium transporter K03549 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001539 483.0
YYD1_k127_1129530_1 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005712 391.0
YYD1_k127_1129530_2 COGs COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001025 273.0
YYD1_k127_1129530_3 - - - - 0.00000000000000000000000000000000000000002069 152.0
YYD1_k127_115675_0 Catalase K03781 - 1.11.1.6 7.47e-306 940.0
YYD1_k127_115675_1 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.00003657 46.0
YYD1_k127_116319_0 SPTR CHU large protein - - - 0.000000000000000000000000002815 123.0
YYD1_k127_116319_1 IMG reference gene - - - 0.0000000000000000000000003704 119.0
YYD1_k127_1172646_0 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 389.0
YYD1_k127_1172646_1 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000138 299.0
YYD1_k127_1172646_2 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000009794 196.0
YYD1_k127_1172646_3 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000000000000000000000000000008043 160.0
YYD1_k127_1172646_4 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000005935 145.0
YYD1_k127_1172646_5 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.0000000000000000000000000001685 120.0
YYD1_k127_1172646_6 IMP dehydrogenase activity K04767,K07182 - - 0.0000000000000000000000009624 109.0
YYD1_k127_1172646_7 PhoQ Sensor - - - 0.0000000000000001835 91.0
YYD1_k127_1181512_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002139 533.0
YYD1_k127_1181512_1 Family of unknown function (DUF1028) K04771 - 3.4.21.107 0.00000000000000000000000000000000002161 147.0
YYD1_k127_1182853_0 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 3.695e-246 784.0
YYD1_k127_1182853_1 Uncharacterized protein conserved in bacteria (DUF2236) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003929 415.0
YYD1_k127_1182853_3 - - - - 0.000003214 49.0
YYD1_k127_1188558_0 histidine kinase-, DNA gyrase B - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 394.0
YYD1_k127_1188558_1 histidine kinase-, DNA gyrase B - - - 0.00000001214 63.0
YYD1_k127_1191140_0 Animal haem peroxidase - - - 1.851e-271 847.0
YYD1_k127_1191140_1 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000889 192.0
YYD1_k127_1191140_2 Inward rectifier potassium channel K08715 - - 0.00000000000000000000000000000000000000002259 160.0
YYD1_k127_1203896_0 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family K11102,K11103 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001748 486.0
YYD1_k127_1226580_0 S1 P1 Nuclease - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 377.0
YYD1_k127_1226580_1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) K04762 - - 0.0000000000000000000000000000000000000000004293 160.0
YYD1_k127_1226580_2 - - - - 0.0000000000000000000000000000000000000000009467 170.0
YYD1_k127_1226580_3 Gliding motility protein GldG K01992 - - 0.000001373 50.0
YYD1_k127_1238328_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 3.368e-230 723.0
YYD1_k127_1238328_1 Nudix hydrolase - - - 0.00000000000000002828 84.0
YYD1_k127_1244293_0 Deoxycytidine triphosphate deaminase K01494 - 3.5.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 290.0
YYD1_k127_1244293_1 domain, Protein K20276 - - 0.0000000000000000000000000000000000000009857 166.0
YYD1_k127_1244293_2 response regulator, receiver - - - 0.00000000000000000000000000000000000006379 151.0
YYD1_k127_1244293_3 Belongs to the P-Pant transferase superfamily - - - 0.0000000000000000000000000000000537 134.0
YYD1_k127_1244293_4 Pasta domain K01921,K08884,K12132 - 2.7.11.1,6.3.2.4 0.0000000000000000000000002858 116.0
YYD1_k127_1244293_5 Rhodanese Homology Domain - - - 0.0000000000000000000002297 99.0
YYD1_k127_1244293_6 - - - - 0.00002775 53.0
YYD1_k127_1245010_0 nitric oxide reductase K04561 - 1.7.2.5 7.863e-213 666.0
YYD1_k127_1245010_1 transcriptional regulator - - - 0.000000000000000000000000000000000000000008793 157.0
YYD1_k127_1263217_0 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000008143 138.0
YYD1_k127_1263217_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03428,K07003,K15984 - 2.1.1.11,2.1.1.242 0.00000000000000000000000004546 118.0
YYD1_k127_1263217_2 Aldo Keto reductase K07257 - - 0.0000000000000000000000003648 117.0
YYD1_k127_1272166_0 regulation of response to stimulus - - - 0.00000000000000000000000000000000007152 153.0
YYD1_k127_1272768_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 331.0
YYD1_k127_1272768_1 Oxidoreductase - - - 0.000000000000000000000000000004316 121.0
YYD1_k127_1272768_2 Protein of unknown function (DUF1572) - - - 0.000000101 54.0
YYD1_k127_1272896_0 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 460.0
YYD1_k127_1272896_1 Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000005646 268.0
YYD1_k127_1272896_2 Protein of unknown function (DUF1572) - - - 0.00000000000000000000000000000000000000000000000000000000000000007969 226.0
YYD1_k127_1272896_3 Oxidoreductase - - - 0.0000000000000000000000000000001063 125.0
YYD1_k127_1272896_4 DNA alkylation repair enzyme - - - 0.00000000000000001406 84.0
YYD1_k127_1286574_0 agmatine deiminase activity K08589,K10536 GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0043167,GO:0043169,GO:0043170,GO:0044238,GO:0046872,GO:0070011,GO:0071704,GO:0140096,GO:1901564 3.4.22.37,3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007084 400.0
YYD1_k127_1286574_1 Transposase - - - 0.00000000000000000000000000000000000000000000000002358 185.0
YYD1_k127_1288863_0 PFAM Cytochrome c assembly protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008777 378.0
YYD1_k127_1292831_0 Histidine kinase - - - 0.00000000000000000000000001706 126.0
YYD1_k127_1299672_0 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002487 314.0
YYD1_k127_1299672_1 Histidine kinase - - - 0.00000000335 69.0
YYD1_k127_1301302_0 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 535.0
YYD1_k127_1301302_1 Belongs to the glycosyl hydrolase 18 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 531.0
YYD1_k127_1301302_2 GHMP kinases N terminal domain K07031 - 2.7.1.168 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002531 418.0
YYD1_k127_1307616_0 - - - - 0.000000000000000000000000000004173 128.0
YYD1_k127_1307616_1 - - - - 0.000000000000000000002948 101.0
YYD1_k127_1307616_2 C-type lectin (CTL) or carbohydrate-recognition domain (CRD) - - - 0.0007619 44.0
YYD1_k127_1313665_0 cell adhesion involved in biofilm formation - - - 5.629e-230 786.0
YYD1_k127_1313665_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000003364 220.0
YYD1_k127_1313665_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000000000000000001589 206.0
YYD1_k127_1313665_3 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000000000000000000000000000000000000000002652 200.0
YYD1_k127_1313665_4 peptidase activity, acting on L-amino acid peptides K03385 - 1.7.2.2 0.00000000000001198 90.0
YYD1_k127_1313665_5 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.0000000000005533 69.0
YYD1_k127_1313665_6 Y_Y_Y domain - - - 0.000000000396 70.0
YYD1_k127_1319522_0 Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides K03386 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004716 398.0
YYD1_k127_1319522_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000001111 139.0
YYD1_k127_1319522_2 Radical SAM domain protein - - - 0.000000000000000000000000000002383 120.0
YYD1_k127_132615_0 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.000000000000000000000000000000000000000000000000000000000000000000000000009918 256.0
YYD1_k127_132615_1 PFAM Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000002253 216.0
YYD1_k127_132615_2 Specifically methylates the N7 position of a guanine in 16S rRNA K03501 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.170 0.000000000000000000000000000000000000000000000000000001834 197.0
YYD1_k127_132615_3 PFAM ATP-binding region ATPase domain protein - - - 0.0000000000002871 70.0
YYD1_k127_1327872_0 TonB-dependent Receptor Plug Domain - - - 0.00000000000000000000000000000000000000000000000000000000008124 230.0
YYD1_k127_1331471_0 AMP-dependent synthetase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004676 404.0
YYD1_k127_1331471_1 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011 365.0
YYD1_k127_1331471_2 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.00000000000000007657 83.0
YYD1_k127_1331471_3 NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 K03495 GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363 - 0.000000000002693 66.0
YYD1_k127_1335399_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1757.0
YYD1_k127_1335399_1 Catalyzes the conversion of dihydroorotate to orotate K00226 - 1.3.98.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001677 355.0
YYD1_k127_1352309_0 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002972 409.0
YYD1_k127_1352309_1 Amidinotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006123 295.0
YYD1_k127_1358428_0 Endoribonuclease that initiates mRNA decay K18682 - - 5.094e-240 752.0
YYD1_k127_1358428_1 Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division K09888 - - 0.00000000009948 65.0
YYD1_k127_1365893_0 PFAM AAA ATPase central domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001066 601.0
YYD1_k127_1365893_1 Belongs to the peptidase S8 family K20755 - 3.4.21.121 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 595.0
YYD1_k127_1365893_2 GAD-like domain - - - 0.000000000005747 72.0
YYD1_k127_1374356_0 hemolysin activation secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007794 511.0
YYD1_k127_1374356_1 oxidoreductases (related to aryl-alcohol dehydrogenases) - - - 0.0004458 53.0
YYD1_k127_1384781_0 Alpha amylase, catalytic domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001509 491.0
YYD1_k127_1384781_1 Oxidoreductase family, C-terminal alpha beta domain K13016 - 1.1.1.335 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008411 353.0
YYD1_k127_1384781_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000000000000002733 130.0
YYD1_k127_1386055_0 Peptidase, M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008944 349.0
YYD1_k127_1386055_1 ArgK protein K07588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009748 266.0
YYD1_k127_1386055_2 Methylmalonyl-CoA mutase K01847 - 5.4.99.2 0.000000005147 64.0
YYD1_k127_139108_0 VIT family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 532.0
YYD1_k127_139108_1 domain, Protein - - - 0.00000000000000000000000000000000000000000000000003004 197.0
YYD1_k127_139108_2 peptidyl-tyrosine sulfation - - - 0.0000000002171 64.0
YYD1_k127_139108_3 Protein of unknown function (DUF3494) - - - 0.000008457 58.0
YYD1_k127_140977_0 exo-alpha-(2->6)-sialidase activity - - - 1.527e-218 689.0
YYD1_k127_140977_1 ABC transporter K15738 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009568 608.0
YYD1_k127_140977_2 nitric oxide reductase K04561 - 1.7.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006218 552.0
YYD1_k127_140977_3 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007004 446.0
YYD1_k127_140977_4 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 - 1.3.5.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 408.0
YYD1_k127_140977_5 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000001664 237.0
YYD1_k127_1434737_0 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008325 520.0
YYD1_k127_1434737_1 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000007717 231.0
YYD1_k127_1434737_2 Helix-hairpin-helix motif - - - 0.0000000000000000000000000000004163 134.0
YYD1_k127_1440299_0 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001159 257.0
YYD1_k127_1440299_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.0000000000000000000000000000000000009987 142.0
YYD1_k127_1440299_2 4TM region of pyridine nucleotide transhydrogenase, mitoch K00324 - 1.6.1.2 0.000000000000000000000000000000000001777 140.0
YYD1_k127_1454157_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 314.0
YYD1_k127_1454157_1 Succinylglutamate desuccinylase / Aspartoacylase family K05526 - 3.5.1.96 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000116 291.0
YYD1_k127_1454157_2 Outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001671 250.0
YYD1_k127_1454157_3 Metallo-peptidase family M12B Reprolysin-like - - - 0.000008779 54.0
YYD1_k127_1458200_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 5.357e-296 920.0
YYD1_k127_1463314_0 - - - - 0.000000000000000000000000001137 120.0
YYD1_k127_1463314_3 C-terminal domain of CHU protein family - - - 0.0000000000000000000002956 113.0
YYD1_k127_1463314_5 arylsulfatase activity - - - 0.00000000000000000009251 103.0
YYD1_k127_1463314_6 C-terminal domain of CHU protein family - - - 0.0000000000007407 82.0
YYD1_k127_1463314_7 - - - - 0.0004985 49.0
YYD1_k127_1467996_0 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003252 308.0
YYD1_k127_1467996_1 - - - - 0.00000000002657 69.0
YYD1_k127_1472728_0 aconitate hydratase K01681 - 4.2.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 544.0
YYD1_k127_1472728_1 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001401 280.0
YYD1_k127_1472728_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.00000000000000000000000000000000000000000000000000001286 195.0
YYD1_k127_1472728_3 PFAM extracellular solute-binding protein, family 3 K02030 - - 0.0000000000000000000000000000000000000000001771 176.0
YYD1_k127_1472728_4 Belongs to the UPF0102 family K07460 - - 0.00000000000000000003353 95.0
YYD1_k127_1472728_5 Ig-like domain from next to BRCA1 gene - - - 0.000000000000000000271 102.0
YYD1_k127_1473363_0 aconitate hydratase K01681 - 4.2.1.3 0.0 1212.0
YYD1_k127_1473363_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 550.0
YYD1_k127_1477036_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002064 539.0
YYD1_k127_1477036_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001836 537.0
YYD1_k127_1477036_10 - - - - 0.000000000002419 70.0
YYD1_k127_1477036_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003007 535.0
YYD1_k127_1477036_3 Cell division protein FtsI penicillin-binding protein 2 K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007191 546.0
YYD1_k127_1477036_4 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006184 523.0
YYD1_k127_1477036_5 Belongs to the SEDS family K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004946 428.0
YYD1_k127_1477036_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001619 426.0
YYD1_k127_1477036_7 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004694 428.0
YYD1_k127_1477036_8 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 407.0
YYD1_k127_1477036_9 Cell division protein K03589 - - 0.0000000000000000000000000000000000000001895 159.0
YYD1_k127_1488044_0 Peptidase M16 K07263 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 330.0
YYD1_k127_1488044_2 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.000003781 49.0
YYD1_k127_1492462_0 methylmalonyl-CoA mutase N-terminal domain K01847 - 5.4.99.2 3.784e-311 965.0
YYD1_k127_1492462_1 Peptidase M16 K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003375 396.0
YYD1_k127_1492462_2 peptidase M1 K01256 - 3.4.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 383.0
YYD1_k127_1492462_3 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000005364 104.0
YYD1_k127_1492552_0 Outer membrane protein beta-barrel family - - - 1.976e-247 789.0
YYD1_k127_1492552_1 epimerase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003315 258.0
YYD1_k127_1504031_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 568.0
YYD1_k127_1504031_1 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 445.0
YYD1_k127_1504031_2 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000003177 241.0
YYD1_k127_1504031_3 Glycosyltransferase like family 2 - - - 0.00000000000000001332 88.0
YYD1_k127_1512093_0 Evidence 4 Homologs of previously reported genes of - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009702 478.0
YYD1_k127_1512093_1 Glutathione synthase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001956 472.0
YYD1_k127_1512093_2 ATP-grasp domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 421.0
YYD1_k127_1512093_3 esterase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005508 295.0
YYD1_k127_1512093_4 GMP synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004334 265.0
YYD1_k127_1512093_5 Glycogen recognition site of AMP-activated protein kinase - - - 0.0000000000000001585 80.0
YYD1_k127_1516041_0 Belongs to the UbiD family K03182 - 4.1.1.98 1.549e-252 790.0
YYD1_k127_1516041_1 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.00000000000000000000002498 116.0
YYD1_k127_153263_0 Beta-glucanase Beta-glucan synthetase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001617 463.0
YYD1_k127_153263_1 alpha beta K06889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 392.0
YYD1_k127_153263_2 beta-lactamase K17838,K22351 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000224 293.0
YYD1_k127_153263_3 - - - - 0.00000000000000000000000000000000000003714 148.0
YYD1_k127_153263_4 response regulator - - - 0.0000004408 51.0
YYD1_k127_1534166_0 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003048 284.0
YYD1_k127_1534166_1 PFAM Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000143 214.0
YYD1_k127_1534166_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.00000000000000000000000000000000007371 151.0
YYD1_k127_1539901_0 acyl-CoA dehydrogenase - - - 6.447e-230 726.0
YYD1_k127_1539901_1 MOSC domain - - - 0.000000000000000000000000822 109.0
YYD1_k127_1539901_2 PFAM PKD domain containing protein - - - 0.0000000006675 66.0
YYD1_k127_1541313_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1111.0
YYD1_k127_1541313_1 COG1249 Pyruvate 2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) K00382 - 1.8.1.4 6.783e-222 695.0
YYD1_k127_1541313_2 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 617.0
YYD1_k127_1541313_3 PKD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 481.0
YYD1_k127_1541313_4 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 344.0
YYD1_k127_1541313_5 Phage shock protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 343.0
YYD1_k127_1541313_6 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000179 333.0
YYD1_k127_1541313_7 secondary active sulfate transmembrane transporter activity - - - 0.000000000000000000000000000134 124.0
YYD1_k127_1541313_8 long-chain fatty acid transport protein - - - 0.00005825 53.0
YYD1_k127_1560440_0 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000211 252.0
YYD1_k127_1582319_0 Domain of unknown function (DUF4394) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004071 538.0
YYD1_k127_1582319_1 belongs to the CobB CobQ family K06873 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005889 402.0
YYD1_k127_1582319_2 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002345 392.0
YYD1_k127_1582319_3 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 391.0
YYD1_k127_1582319_4 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000006395 177.0
YYD1_k127_1582319_5 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000003767 173.0
YYD1_k127_1582319_6 Domain of unknown function (DUF4394) - - - 0.0000000000000000000000000000000000000000000001825 179.0
YYD1_k127_1582319_7 Binds together with S18 to 16S ribosomal RNA K02990 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0019843,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070181,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000001532 158.0
YYD1_k127_1582319_8 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000009924 151.0
YYD1_k127_1582319_9 Domain of unknown function (DUF4920) - - - 0.00000000000000000000000000000000000001195 149.0
YYD1_k127_1600328_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 2.055e-245 769.0
YYD1_k127_1600328_1 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003444 607.0
YYD1_k127_1600328_2 Fibronectin type III domain - - - 0.000000000000000000000000000000000000000000000001872 196.0
YYD1_k127_1604738_0 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000000000000002666 197.0
YYD1_k127_1604738_1 Transposase IS200 like - - - 0.000000000000000000000000000000000000001007 151.0
YYD1_k127_1621107_0 Beta-eliminating lyase - - - 2.076e-239 747.0
YYD1_k127_1621107_1 tryptophanase activity K01667 - 4.1.99.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009001 567.0
YYD1_k127_1621107_3 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000007084 72.0
YYD1_k127_1624600_0 metallopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000002313 235.0
YYD1_k127_1624600_1 - - - - 0.00000000000000004647 96.0
YYD1_k127_1627541_0 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008217 312.0
YYD1_k127_1627541_1 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000001286 86.0
YYD1_k127_1632597_0 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth K00088 - 1.1.1.205 5.977e-218 686.0
YYD1_k127_1632597_1 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.0000000000000000000000000000000000000000000000000000000000000007771 225.0
YYD1_k127_1632597_2 Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) K11991 - 3.5.4.33 0.000000000000000000000000000000000000000000000000000000001987 203.0
YYD1_k127_1632597_3 Transposase IS200 like - - - 0.000000000000000000000000000000000000000002318 163.0
YYD1_k127_1632597_4 - - - - 0.0000000002758 63.0
YYD1_k127_1633037_0 Saccharopine dehydrogenase C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007789 534.0
YYD1_k127_1633037_1 PFAM glutamine synthetase catalytic region K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007186 467.0
YYD1_k127_1633037_2 Hydroxymethylglutaryl-CoA lyase K01640 - 4.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 414.0
YYD1_k127_1633037_3 radical SAM domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007208 414.0
YYD1_k127_1633037_4 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001684 263.0
YYD1_k127_1633037_5 Protein of unknown function (DUF962) - - - 0.0000000000000000000000000000000000000000000000009174 179.0
YYD1_k127_1633037_6 glycosyl transferase family 2 - - - 0.0000000000000116 76.0
YYD1_k127_1638408_0 peptidase M1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001263 485.0
YYD1_k127_1638408_1 Belongs to the DegT DnrJ EryC1 family K20429 - 2.6.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004905 388.0
YYD1_k127_1638408_2 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000001215 200.0
YYD1_k127_1638408_3 Bacterial transferase hexapeptide (six repeats) - - - 0.000000000000000000000003633 110.0
YYD1_k127_1638408_4 4-alpha-L-fucosyltransferase glycosyl transferase group 56 - - - 0.000000000000000000006234 106.0
YYD1_k127_1639420_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 358.0
YYD1_k127_1639420_1 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000001851 247.0
YYD1_k127_1639420_2 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002246 247.0
YYD1_k127_1639420_3 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.0000000000000000000000000000000000000000000000000212 185.0
YYD1_k127_1639420_4 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.0000000000000000000000000000000000000003184 165.0
YYD1_k127_1639420_5 Cytochrome c - - - 0.0000000000000000000000001307 109.0
YYD1_k127_1639420_6 tRNA_anti-like - - - 0.000000000000000001691 91.0
YYD1_k127_1639420_7 membrane protein, TerC K05794 - - 0.0004185 44.0
YYD1_k127_1648048_0 signal transduction protein with a C-terminal ATPase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000007543 242.0
YYD1_k127_1648048_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000654 210.0
YYD1_k127_1648922_0 WD40 repeats - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002106 501.0
YYD1_k127_1648922_1 Pkd domain containing protein K12567 - 2.7.11.1 0.000000000002137 79.0
YYD1_k127_1648922_2 phosphoribosylanthranilate isomerase activity K01817 - 5.3.1.24 0.00004764 52.0
YYD1_k127_1648922_3 Belongs to the 5'-nucleotidase family - - - 0.00009773 55.0
YYD1_k127_1650826_0 TIGRFAM dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003185 560.0
YYD1_k127_1650826_1 Ergosterol biosynthesis ERG4/ERG24 family K00213,K00223 - 1.3.1.21,1.3.1.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001371 483.0
YYD1_k127_1650826_2 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 310.0
YYD1_k127_1661576_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 396.0
YYD1_k127_1661576_1 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.00000000000000000000000000000000003236 138.0
YYD1_k127_1661576_2 Metallo-peptidase family M12 - - - 0.0000000000000001578 85.0
YYD1_k127_1671257_0 PFAM Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000001474 212.0
YYD1_k127_1671257_1 - - - - 0.000000000000000000000000000000000000000000000005114 179.0
YYD1_k127_1671257_2 PFAM 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.0000000000000000000000000000000000000000006404 166.0
YYD1_k127_1671257_4 Lipase (class 3) - - - 0.0000000000000000000000000000003237 128.0
YYD1_k127_1671257_5 - - - - 0.000009877 54.0
YYD1_k127_1671821_0 Conserved repeat domain - - - 5.243e-204 672.0
YYD1_k127_1671821_1 Two component regulator propeller - - - 6.672e-200 628.0
YYD1_k127_1671821_3 6-phosphogluconate dehydrogenase, C-terminal domain K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000002563 130.0
YYD1_k127_1671821_4 Ribosomal RNA adenine dimethylase - - - 0.0000000000000000000000001216 114.0
YYD1_k127_1681748_0 Mycolic acid cyclopropane synthetase K00574,K20238 - 2.1.1.317,2.1.1.79 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003061 481.0
YYD1_k127_1681748_1 NmrA-like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 347.0
YYD1_k127_1681748_2 PFAM Cytochrome c - - - 0.000000000000000000000000000000000000000006782 155.0
YYD1_k127_1681748_3 epimerase - - - 0.00000000000004385 73.0
YYD1_k127_1684985_0 Angiotensin-converting enzyme K01283 - 3.4.15.1 1.979e-252 792.0
YYD1_k127_1684985_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000002218 85.0
YYD1_k127_1684985_2 beta-lactamase domain protein - - - 0.000000000001962 70.0
YYD1_k127_1687159_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 433.0
YYD1_k127_1687159_1 Doxx family - - - 0.000000000004327 76.0
YYD1_k127_168901_0 COG0438 Glycosyltransferase K13004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002334 351.0
YYD1_k127_168901_1 glycosyl transferase - - - 0.000000000000000000000000000000000000000000000000000000000001794 225.0
YYD1_k127_168901_2 Nucleotidyl transferase K00971 - 2.7.7.13 0.000000618 51.0
YYD1_k127_1694584_0 ABC-type uncharacterized transport system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005439 477.0
YYD1_k127_1694584_1 DNA polymerase K02347 - - 0.00000000000000000000000000000000000000000000000000000000007851 213.0
YYD1_k127_1694584_2 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000003715 200.0
YYD1_k127_1694584_3 Domain of unknown function (DUF4340) - - - 0.0000000000000000000412 101.0
YYD1_k127_1695075_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123 484.0
YYD1_k127_1695075_1 hemolysin activation secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003055 361.0
YYD1_k127_1695075_2 Belongs to the SOS response-associated peptidase family - - - 0.0000000000000000000000000000000000000000000000000000000000003392 218.0
YYD1_k127_1695075_3 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03749 - - 0.00000004222 60.0
YYD1_k127_169871_0 ASPIC and UnbV - - - 5.288e-225 715.0
YYD1_k127_169871_1 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000186 419.0
YYD1_k127_169871_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.0000000000000000000004336 100.0
YYD1_k127_169871_3 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.00000000000000001074 84.0
YYD1_k127_1701285_0 Belongs to the glycosyl hydrolase 13 family - - - 4.122e-209 668.0
YYD1_k127_1701285_1 branched-chain-amino-acid transaminase activity K00824,K00826 - 2.6.1.21,2.6.1.42 0.0000000000000000000000000000000000000000000000000000000002322 213.0
YYD1_k127_1701285_2 - - - - 0.0000000000000000002502 88.0
YYD1_k127_1707092_0 Belongs to the peptidase S8 family - - - 4.859e-196 661.0
YYD1_k127_1709004_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000008676 181.0
YYD1_k127_1717406_0 COG1331 Highly conserved protein containing a thioredoxin domain K06888 - - 5.091e-239 756.0
YYD1_k127_1717406_1 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006649 599.0
YYD1_k127_1717406_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.0000000000107 66.0
YYD1_k127_1720969_0 heme binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002167 513.0
YYD1_k127_1720969_1 COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 428.0
YYD1_k127_172234_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 GO:0003674,GO:0003824,GO:0004648,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.6.1.52 0.000000000000000000000000000000000000000000000000000000000000000000006206 238.0
YYD1_k127_172234_1 Response regulator of the LytR AlgR family K02477 - - 0.0000000000000000000000000000000000000000000000000000002435 202.0
YYD1_k127_172234_2 Histidine kinase - - - 0.000000000000000000000007935 104.0
YYD1_k127_1728424_0 Protein of unknown function (DUF1624) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007093 437.0
YYD1_k127_1728424_1 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB K02454,K02652 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.00000000000000000000000000000000000002224 145.0
YYD1_k127_1730162_0 GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001937 523.0
YYD1_k127_1730162_1 GAF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002455 418.0
YYD1_k127_1730162_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008924 420.0
YYD1_k127_1730162_3 cheY-homologous receiver domain - - - 0.000000000000000000000000000000000000000000000000001066 185.0
YYD1_k127_1730162_5 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000004234 89.0
YYD1_k127_1730308_0 - - - - 0.000000000000000000000000000000000000000000000000000001421 199.0
YYD1_k127_1730308_2 - - - - 0.000001403 57.0
YYD1_k127_1738952_0 Domain of unknown function (DUF4010) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009377 456.0
YYD1_k127_1738952_1 FG-GAP repeat - - - 0.00000000000000000000000000000000000000000000000002086 194.0
YYD1_k127_1738952_2 Transcriptional regulator - - - 0.00005736 46.0
YYD1_k127_1744592_0 elongation factor G domain IV K02355 - - 4.852e-314 976.0
YYD1_k127_1744592_1 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 2.63e-221 701.0
YYD1_k127_1744592_2 seryl-tRNA synthetase K01875 - 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001033 555.0
YYD1_k127_1744592_3 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004599 294.0
YYD1_k127_1744592_4 PFAM Peptidase, membrane zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004655 267.0
YYD1_k127_1744592_5 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000003969 228.0
YYD1_k127_1744592_6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07658 - - 0.00000000000000000000000000000000000000000000000000000000000001693 219.0
YYD1_k127_1744592_7 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000000000003947 101.0
YYD1_k127_1744592_8 Belongs to the bacterial ribosomal protein bL34 family K02914 - - 0.0000000000000000972 80.0
YYD1_k127_1744592_9 Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins - - - 0.000007621 56.0
YYD1_k127_1750852_0 PFAM Family of - - - 0.000000000000000000000000000000000000000000000000000001286 206.0
YYD1_k127_1750852_1 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000000000382 201.0
YYD1_k127_1755841_0 Belongs to the aldehyde dehydrogenase family K10217 - 1.2.1.32,1.2.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001867 611.0
YYD1_k127_1755841_1 Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively K01556 - 3.7.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 533.0
YYD1_k127_1755841_2 Amidohydrolase K03392 - 4.1.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000279 472.0
YYD1_k127_1755841_3 PFAM Alpha amylase, catalytic K01176,K01208 GO:0000272,GO:0000287,GO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0004556,GO:0005488,GO:0005509,GO:0005575,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0016020,GO:0016052,GO:0016160,GO:0016787,GO:0016798,GO:0019867,GO:0030246,GO:0030247,GO:0043167,GO:0043169,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046872,GO:0071704,GO:1901575,GO:2001070 3.2.1.1,3.2.1.133,3.2.1.135,3.2.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009506 474.0
YYD1_k127_1755841_4 Tryptophan 2,3-dioxygenase K00453 - 1.13.11.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 430.0
YYD1_k127_1755841_5 PFAM RES domain - - - 0.00000000000000000000000000000000000000000005098 164.0
YYD1_k127_1755841_6 Endoribonuclease L-PSP K15067 - 3.5.99.5 0.00000000000000000000000000000000000001316 147.0
YYD1_k127_1755841_7 Protein of unknown function (DUF2384) - - - 0.00000000000000000000000000000000000002561 147.0
YYD1_k127_175934_0 translation initiation factor activity K02519 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006239 550.0
YYD1_k127_175934_1 peptidase - - - 0.000000000000000000000000000002019 122.0
YYD1_k127_175977_0 Two component regulator propeller K00936 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004447 370.0
YYD1_k127_1760222_0 Metallo-peptidase family M12 - - - 2.382e-208 679.0
YYD1_k127_1760222_1 Metallo-peptidase family M12 - - - 5.98e-198 642.0
YYD1_k127_1760222_2 ATPases associated with a variety of cellular activities K06147 - - 0.0000000000000000000000000000000000000000000000000000000002251 203.0
YYD1_k127_1760222_3 PFAM RNA polymerase sigma factor 70, region 4 type 2 K03088 - - 0.0000000000000000000000000000000000000000000000000005742 189.0
YYD1_k127_1760222_4 redox protein regulator of disulfide bond formation K07397 - - 0.000000000000000000000000000000000375 136.0
YYD1_k127_1760222_5 - - - - 0.000000000000000000000000000002351 134.0
YYD1_k127_1760222_6 - - - - 0.00000000000000001528 90.0
YYD1_k127_1760222_7 - - - - 0.000000001012 66.0
YYD1_k127_1762273_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001209 483.0
YYD1_k127_1762273_1 Belongs to the peptidase S8 family K20755 - 3.4.21.121 0.0000000000000000000000000000000000000000000000000000000000000000000000001798 256.0
YYD1_k127_1762273_2 D-alanyl-D-alanine carboxypeptidase K17733 - - 0.0000000000000000000000000000000000000000000000000000000000000002062 226.0
YYD1_k127_1762273_3 - - - - 0.00000000000000000000000000000000000000000000000000007731 198.0
YYD1_k127_1762273_4 Transcription termination factor nusG - - - 0.0000000000000000000000000000000006363 137.0
YYD1_k127_1769501_0 regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 391.0
YYD1_k127_1769501_1 metallopeptidase activity K13735 - - 0.000000000000000000000000000000000000006164 162.0
YYD1_k127_1782767_0 Immunoglobulin like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003225 576.0
YYD1_k127_1782767_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000142 435.0
YYD1_k127_1782767_2 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000000000000000000000000000003318 238.0
YYD1_k127_1782767_3 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000001199 244.0
YYD1_k127_1782767_4 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000001391 199.0
YYD1_k127_1782767_5 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000001611 136.0
YYD1_k127_1782767_6 phosphoesterase, PA-phosphatase related - - - 0.0006314 45.0
YYD1_k127_1783598_0 Protein of unknown function (DUF2723) - - - 0.0 1177.0
YYD1_k127_1783598_1 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 9.757e-228 716.0
YYD1_k127_1783598_2 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 546.0
YYD1_k127_1783598_3 Ribose 5-phosphate isomerase K01808 - 5.3.1.6 0.0000000000000000000000000000000000000000000000000000000001108 206.0
YYD1_k127_1783598_4 Glycosyltransferase Family 4 - - - 0.000000000000000000000000006107 114.0
YYD1_k127_1800569_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000006927 228.0
YYD1_k127_1800569_1 Protein of unknown function (DUF1572) - - - 0.000000000000000000000000000000000000000000001766 169.0
YYD1_k127_1800569_2 phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000000000001218 130.0
YYD1_k127_1800931_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008144,GO:0008150,GO:0008320,GO:0008565,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0022884,GO:0030554,GO:0031224,GO:0031226,GO:0031522,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033220,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043492,GO:0043952,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045184,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1904680 - 0.0 1386.0
YYD1_k127_1818079_0 TonB-dependent Receptor Plug Domain K02014 - - 0.0000000000000000000000000000000000000000004269 173.0
YYD1_k127_1818079_1 TonB-dependent receptor - - - 0.000000000000000000000000003097 116.0
YYD1_k127_1822926_0 Motility related/secretion protein - - - 3.454e-275 867.0
YYD1_k127_1826991_0 protein involved in exopolysaccharide biosynthesis - - - 0.0 1060.0
YYD1_k127_1826991_1 Integral membrane protein TerC K05794 - - 0.00000000000000000000000000000000000000000000003725 171.0
YYD1_k127_1826991_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA - - - 0.0000000000000000000000000000000008978 136.0
YYD1_k127_1826991_3 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04757 - 2.7.11.1 0.0000000000000000000000000000001022 128.0
YYD1_k127_1826991_4 Belongs to the inositol monophosphatase superfamily K01082 - 3.1.3.7 0.0000000000003174 72.0
YYD1_k127_1826991_5 2-hydroxyglutarate dehydrogenase activity K00109 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006103,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016491,GO:0016614,GO:0019538,GO:0019752,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0047545,GO:0051186,GO:0055114,GO:0071704,GO:0098573,GO:1901564 1.1.99.2 0.00004046 47.0
YYD1_k127_1848954_0 TonB dependent receptor - - - 2.781e-307 976.0
YYD1_k127_1848954_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 5.087e-267 827.0
YYD1_k127_1848954_10 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.00000000006651 72.0
YYD1_k127_1848954_11 PFAM conserved - - - 0.0000004932 51.0
YYD1_k127_1848954_12 resolvase domain protein - - - 0.0004132 43.0
YYD1_k127_1848954_2 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 1.354e-212 687.0
YYD1_k127_1848954_3 Bacterial sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009432 547.0
YYD1_k127_1848954_4 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00626 - 2.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004351 545.0
YYD1_k127_1848954_5 Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate K03474 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0008615,GO:0009058,GO:0009110,GO:0009987,GO:0016740,GO:0016769,GO:0017144,GO:0018130,GO:0019438,GO:0033856,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 2.6.99.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005373 325.0
YYD1_k127_1848954_6 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000006866 220.0
YYD1_k127_1848954_7 CAAX amino terminal protease family K07052 - - 0.00000000000000000000000000000000000000000000002448 181.0
YYD1_k127_1848954_8 Belongs to the CDS family K00981 - 2.7.7.41 0.000000000000000000000000000000000000001756 158.0
YYD1_k127_1848954_9 RNA recognition motif - - - 0.000000000000000000006643 98.0
YYD1_k127_1862083_0 Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 K00946 - 2.7.4.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 477.0
YYD1_k127_1862083_1 Acetyltransferase (GNAT) domain K03790 - 2.3.1.128 0.000000000000000000000000000000000000000000000000000000000195 210.0
YYD1_k127_1862083_2 metallopeptidase activity K12287 - - 0.0000000000000000000000000000000000000000000000000000001245 224.0
YYD1_k127_1862083_3 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000000000000000000002994 195.0
YYD1_k127_1862681_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007347 394.0
YYD1_k127_1862681_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004895 280.0
YYD1_k127_1862681_2 GIY-YIG catalytic domain K07461 - - 0.0000000000000000000000000000000000002818 143.0
YYD1_k127_1862681_3 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000000000000001263 108.0
YYD1_k127_1862681_4 Lipopolysaccharide-assembly, LptC-related - - - 0.0000000000000000000000001527 114.0
YYD1_k127_1862681_5 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K17103 - 2.7.8.8 0.000000000000000000006241 103.0
YYD1_k127_1863115_0 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004256 444.0
YYD1_k127_1863115_1 Peptidase family C25 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002688 304.0
YYD1_k127_1863115_2 Belongs to the peptidase S8 family - - - 0.000703 42.0
YYD1_k127_1867873_0 Adenine deaminase C-terminal domain K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017 561.0
YYD1_k127_1867873_1 metallopeptidase activity K12287 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000194 294.0
YYD1_k127_1867873_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001606 233.0
YYD1_k127_1867873_3 Protein of unknown function (DUF3467) - - - 0.000000000000000000000000000000000000000000001461 166.0
YYD1_k127_1882441_0 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003326 247.0
YYD1_k127_1882441_1 transcriptional regulator - - - 0.00000000000000000000000000000000000000000001443 163.0
YYD1_k127_1882441_2 beta-galactosidase activity - - - 0.0000000000000000000000000000000000002054 143.0
YYD1_k127_1882441_3 - - - - 0.000000000000000001164 87.0
YYD1_k127_1882441_4 COG3794 Plastocyanin - - - 0.000105 52.0
YYD1_k127_1882441_5 Putative phosphatase (DUF442) - - - 0.0001133 51.0
YYD1_k127_1883095_0 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 292.0
YYD1_k127_1883095_1 light absorption K07255,K21700 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000565 261.0
YYD1_k127_1883095_2 Protein of unknown function (DUF4256) - - - 0.000000000000000000000000000008572 118.0
YYD1_k127_1883095_3 serine-type endopeptidase activity - - - 0.0000000000000000007085 97.0
YYD1_k127_1883095_4 -acetyltransferase K17840 - 2.3.1.59 0.00004649 48.0
YYD1_k127_1888503_0 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.000000000000000000000000000000000000000000000000000000000000000000000005723 249.0
YYD1_k127_1888503_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000000000000000000000000003107 177.0
YYD1_k127_1888503_2 TIGRFAM conserved repeat domain - - - 0.000000000000000000000000000000000000000000001325 185.0
YYD1_k127_1888503_3 Belongs to the UPF0176 family K07146 - - 0.000000000000000000000000000000000000000000001733 169.0
YYD1_k127_1888503_4 Universal bacterial protein YeaZ K14742 - - 0.00000000000000000000000000000000000001995 152.0
YYD1_k127_1888503_5 Molecular chaperone DnaK - - - 0.0000000000000000000000000000001883 138.0
YYD1_k127_1888503_6 DNA-binding transcription factor activity K03892 - - 0.000000000000000000000000000004853 121.0
YYD1_k127_1888503_7 Endonuclease I - - - 0.000000000000000000000001833 119.0
YYD1_k127_1892883_0 Paraquat-inducible protein A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009729 378.0
YYD1_k127_1892883_2 PFAM Endonuclease Exonuclease phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000574 261.0
YYD1_k127_1892883_3 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000661 61.0
YYD1_k127_1892995_0 PFAM Yqey-like protein K09117 - - 0.00000000000000000000000000000000000000000000000000002684 192.0
YYD1_k127_1892995_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000006949 189.0
YYD1_k127_1892995_2 Outer membrane protein beta-barrel domain - - - 0.000000000000215 79.0
YYD1_k127_1897576_0 Belongs to the pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000003694 193.0
YYD1_k127_1897576_1 Putative zincin peptidase - - - 0.00000000000000000000000000000000001681 143.0
YYD1_k127_1897576_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.00000000000000000000000000000001083 132.0
YYD1_k127_1897576_3 Cytochrome c K00406,K12263 - - 0.00000000000000000001583 94.0
YYD1_k127_190115_0 amidohydrolase - - - 6.17e-242 760.0
YYD1_k127_190115_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000006887 224.0
YYD1_k127_190115_2 Histidine phosphatase superfamily (branch 1) - - - 0.00000000000000000000000000000000000000000007914 165.0
YYD1_k127_190115_3 Opacity protein - - - 0.0000007538 59.0
YYD1_k127_1935038_0 asparagine synthase K01953 - 6.3.5.4 2e-323 993.0
YYD1_k127_1935038_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 0.00000000000000000000000000000000000000000000000000001632 192.0
YYD1_k127_1935038_2 Pyridine nucleotide-disulphide oxidoreductase K17218 - 1.8.5.4 0.000000000000000000000000000000002558 129.0
YYD1_k127_193787_0 GTP-binding protein TypA K06207 - - 4.82e-321 990.0
YYD1_k127_193787_1 Proline dehydrogenase K00318 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002784 434.0
YYD1_k127_193787_2 PFAM Shikimate dehydrogenase substrate binding K00014 - 1.1.1.25 0.000000000000000000000000008408 112.0
YYD1_k127_1941483_0 PFAM PBS lyase - - - 0.0 1301.0
YYD1_k127_1945783_0 Predicted membrane protein (DUF2207) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002076 280.0
YYD1_k127_1945783_1 LemA family K03744 - - 0.0000000000000000000000000000000000000000000000000002732 190.0
YYD1_k127_1945783_2 N-acetylglucosamine kinase - - - 0.00000000000000000000000000000000000002114 156.0
YYD1_k127_1955093_0 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005429 538.0
YYD1_k127_1955093_1 Domain of unknown function (DUF4159) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005451 331.0
YYD1_k127_1955093_2 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.0000000000000000000000000000000000000000000002629 176.0
YYD1_k127_1955093_3 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000108 120.0
YYD1_k127_1955093_4 - - - - 0.00000000000000000000001747 102.0
YYD1_k127_1955093_5 PFAM PspC domain - - - 0.0000000000000005864 80.0
YYD1_k127_1959143_0 signal peptide peptidase SppA, 67K type K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000276 266.0
YYD1_k127_1959143_1 Polyphosphate nucleotide phosphotransferase, PPK2 family - - - 0.000000000000000000000000000000000000000000000000000000000005671 210.0
YYD1_k127_1963296_0 Peptidase dimerisation domain K12941 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004436 605.0
YYD1_k127_1963296_1 hemolysin activation secretion protein - - - 0.00000000000000000000000000000000000000000000000007183 181.0
YYD1_k127_1964226_0 response regulator - - - 0.0000000000000000000000000000000000000000000000003259 183.0
YYD1_k127_1964226_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000002688 174.0
YYD1_k127_1967504_0 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046 524.0
YYD1_k127_1967504_1 protein conserved in bacteria (DUF2329) - - - 0.00000000000000000000000000000000000000000006386 166.0
YYD1_k127_197887_0 SPTR CHU large protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001668 346.0
YYD1_k127_197887_1 Belongs to the peptidase S8 family - - - 0.000003269 62.0
YYD1_k127_199242_0 COG0642 Signal transduction histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001257 470.0
YYD1_k127_199242_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001269 356.0
YYD1_k127_199242_2 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000003673 204.0
YYD1_k127_199242_3 Adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.00000000000000000000000000000000000000007036 152.0
YYD1_k127_199242_4 - - - - 0.00000001239 64.0
YYD1_k127_1997067_0 Belongs to the KdsA family K01627 - 2.5.1.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003231 355.0
YYD1_k127_1997067_1 Iron dicitrate transport regulator FecR K06041 - 5.3.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000001849 244.0
YYD1_k127_1997067_2 TIGRFAM 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270,K21749 - 2.7.7.43,2.7.7.92,3.1.3.45 0.0000000000000000000000000000000000000000000001081 173.0
YYD1_k127_2019422_0 Oxidoreductase K00184 - - 0.0 1141.0
YYD1_k127_2019422_1 PFAM Polysulphide reductase, NrfD K00185 - - 1.948e-256 796.0
YYD1_k127_2019422_2 PFAM Cytochrome c, class I - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006243 568.0
YYD1_k127_2019422_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 GO:0003674,GO:0003824,GO:0004799,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009117,GO:0009165,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0019637,GO:0019692,GO:0032259,GO:0034641,GO:0034654,GO:0042083,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003816 459.0
YYD1_k127_2019422_4 cytochrome C - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009011 278.0
YYD1_k127_2019422_5 Quinol cytochrome c oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004418 249.0
YYD1_k127_2040167_0 heat shock protein binding - - - 2.159e-202 644.0
YYD1_k127_2040167_1 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001906 594.0
YYD1_k127_2040167_2 L-lysine 6-monooxygenase (NADPH-requiring) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004087 545.0
YYD1_k127_2040167_3 4 iron, 4 sulfur cluster binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001549 274.0
YYD1_k127_2040167_4 heat shock protein binding - - - 0.000000000000000000000000000000000005644 159.0
YYD1_k127_2040167_5 - - - - 0.0000000000000000000000004841 109.0
YYD1_k127_2040167_6 heat shock protein binding - - - 0.00000001055 57.0
YYD1_k127_2041884_0 DNA polymerase III, epsilon subunit K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001081 446.0
YYD1_k127_2041884_1 PFAM Uncharacterised conserved protein UCP016719 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 409.0
YYD1_k127_2041884_2 Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate K11752 - 1.1.1.193,3.5.4.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005998 279.0
YYD1_k127_2041884_3 COG1331 Highly conserved protein containing a thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000001485 186.0
YYD1_k127_2041884_4 water channel activity K02440,K06188 - - 0.0000000000000000000000000000000000000000000000001682 184.0
YYD1_k127_2041884_5 DNA polymerase K02347 - - 0.000000000000000000000000000000000000000000005694 164.0
YYD1_k127_2041884_6 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000002291 168.0
YYD1_k127_2043828_0 PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 3.706e-215 675.0
YYD1_k127_2043828_1 PFAM pfkB family carbohydrate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000001238 221.0
YYD1_k127_2051114_0 Tryptophanyl-tRNA synthetase K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 441.0
YYD1_k127_2051114_1 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002656 241.0
YYD1_k127_2051114_2 endoribonuclease L-PSP K09022 - 3.5.99.10 0.00000000000000000000000000000000000000000001595 165.0
YYD1_k127_2051114_3 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000000002502 88.0
YYD1_k127_2051114_4 Uncharacterized ACR, COG1399 - - - 0.00000000000000166 83.0
YYD1_k127_2055751_0 chlorophyll binding K03640 - - 2.73e-245 813.0
YYD1_k127_2055751_1 Outer membrane protein beta-barrel family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000753 354.0
YYD1_k127_2055751_10 PFAM Glycoside hydrolase, family 13 - - - 0.000000000000000009011 85.0
YYD1_k127_2055751_2 PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000003303 261.0
YYD1_k127_2055751_3 Outer membrane protein beta-barrel family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001409 260.0
YYD1_k127_2055751_4 Two component transcriptional regulator, winged helix family - - - 0.000000000000000000000000000000000000000000000000000000000000000000002456 243.0
YYD1_k127_2055751_5 helix_turn_helix, arabinose operon control protein - - - 0.000000000000000000000000000000000000000000002408 182.0
YYD1_k127_2055751_6 Helix-turn-helix domain - - - 0.0000000000000000000000000000000000000002877 151.0
YYD1_k127_2055751_7 Protein of unknown function (Porph_ging) - - - 0.0000000000000000000000000000000000000005552 158.0
YYD1_k127_2055751_8 Phage derived protein Gp49-like (DUF891) - - - 0.0000000000000000000000000000000000006332 141.0
YYD1_k127_2055751_9 TM2 domain - - - 0.00000000000000000000000000000000003622 151.0
YYD1_k127_2057032_0 2-oxoglutarate dehydrogenase, E1 K00164 - 1.2.4.2 0.0 1029.0
YYD1_k127_2057032_1 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000002285 220.0
YYD1_k127_20595_0 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001321 282.0
YYD1_k127_20595_1 Protein of unknown function (DUF2721) - - - 0.00000000000000000000000000000000000003413 148.0
YYD1_k127_2063061_0 Two component regulator propeller - - - 2.633e-224 727.0
YYD1_k127_2063061_1 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009041 271.0
YYD1_k127_2063061_2 Peptidase family M28 - - - 0.00000000000001603 76.0
YYD1_k127_207073_0 BNR Asp-box repeat - - - 0.0 1205.0
YYD1_k127_207073_1 Fe-S oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002288 526.0
YYD1_k127_207073_2 esterase of the alpha-beta hydrolase superfamily K07001 - - 0.00000000000000000000000000000000000000000000000000000000000000000852 233.0
YYD1_k127_207073_3 Pyrimidine operon attenuation protein uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000002506 190.0
YYD1_k127_207073_4 Fe-S oxidoreductase - - - 0.00000000000000000000000000000000001578 136.0
YYD1_k127_2075114_0 COGs COG0737 5'-nucleotidase 2' 3'-cyclic phosphodiesterase and related esterase K01081,K11751 - 3.1.3.5,3.6.1.45 1.012e-277 862.0
YYD1_k127_2075114_1 outer membrane porin, OprD family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007677 503.0
YYD1_k127_2075114_2 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 451.0
YYD1_k127_2075114_3 PFAM YeeE YedE family (DUF395) K07112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001134 274.0
YYD1_k127_2075114_4 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000001566 159.0
YYD1_k127_2075114_5 Acetyltransferase (GNAT) domain K00657 - 2.3.1.57 0.0000000000000000000000000000000000000000005106 161.0
YYD1_k127_2075114_6 DsrE/DsrF-like family K09004 - - 0.00000000000000000000000000000000307 133.0
YYD1_k127_2075114_7 PFAM YeeE YedE family (DUF395) K07112 - - 0.000000000002186 66.0
YYD1_k127_2077231_0 Cytochrome c biogenesis protein transmembrane region K04084 - 1.8.1.8 1.8e-220 713.0
YYD1_k127_2077231_1 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 6.216e-214 683.0
YYD1_k127_2077231_10 Sensor of ECF-type sigma factor - - - 0.0000000000000000003264 93.0
YYD1_k127_2077231_2 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004166 327.0
YYD1_k127_2077231_3 Peptidyl-prolyl cis-trans isomerase K03768 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000002366 239.0
YYD1_k127_2077231_4 Multicopper oxidase K22350 - 1.16.3.3 0.0000000000000000000000000000000000000000000000000000000000000000001053 235.0
YYD1_k127_2077231_5 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000005308 198.0
YYD1_k127_2077231_6 PFAM Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000004142 209.0
YYD1_k127_2077231_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000000002438 175.0
YYD1_k127_2077231_8 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000004244 163.0
YYD1_k127_2077231_9 - - - - 0.000000000000000000000000000000000000000003119 158.0
YYD1_k127_2083237_0 bacterial-type flagellum-dependent cell motility - - - 0.000000000000000000000002131 120.0
YYD1_k127_2086493_0 major facilitator superfamily K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003358 570.0
YYD1_k127_2086493_1 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007091 327.0
YYD1_k127_2086493_2 conserved protein (COG2071) K09166 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004962 293.0
YYD1_k127_2086493_3 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000002952 189.0
YYD1_k127_2092695_0 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014 344.0
YYD1_k127_2092695_1 Chloramphenicol acetyltransferase K19271 - 2.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001259 279.0
YYD1_k127_211824_0 Peptidase S46 - - - 7.172e-249 788.0
YYD1_k127_211824_1 23S rRNA-intervening sequence protein - - - 0.0000000000000000000000000000435 120.0
YYD1_k127_2129822_0 Serine phosphatase RsbU regulator of sigma subunit K07315 - 3.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 398.0
YYD1_k127_2129822_1 Permease, YjgP YjgQ family K11720 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 345.0
YYD1_k127_2129822_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.0000000000000000000000000000000000000000000000000000000000000000000000000001692 262.0
YYD1_k127_2129822_3 TM2 domain - - - 0.000000000000000000000000000000000000000000000000000000000002488 218.0
YYD1_k127_2129822_4 CBS domain - - - 0.0000000000000000000001834 99.0
YYD1_k127_2140363_0 ribonuclease, Rne Rng family K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001407 485.0
YYD1_k127_2140363_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000004455 185.0
YYD1_k127_2140363_2 Belongs to the bacterial histone-like protein family K03530 - - 0.000000000000000000000000000000000000003132 147.0
YYD1_k127_2140363_3 Domain of unknown function (DUF1732) - - - 0.00000000000000001388 87.0
YYD1_k127_2140363_4 - - - - 0.00000008438 53.0
YYD1_k127_2144787_0 Belongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily K01710 - 4.2.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 507.0
YYD1_k127_2144787_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002636 267.0
YYD1_k127_2144787_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000001346 240.0
YYD1_k127_2144787_3 Sulfotransferase domain - - - 0.000000000000000000000000000000000000000000000002412 184.0
YYD1_k127_2144787_4 carbohydrate metabolic process - - - 0.0000000000000000001544 96.0
YYD1_k127_2163574_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 1.303e-220 692.0
YYD1_k127_2163574_1 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001071 256.0
YYD1_k127_2163574_2 Histidine kinase - - - 0.000000000000000000000002333 116.0
YYD1_k127_2174345_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002884 593.0
YYD1_k127_2174345_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004887 489.0
YYD1_k127_2174345_2 Permease, YjgP YjgQ family K07091 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 366.0
YYD1_k127_2174345_3 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008574 302.0
YYD1_k127_2174345_4 signal peptide peptidase SppA, 67K type K04773 - - 0.000000000000000000000000000000000000000000000000000000003705 215.0
YYD1_k127_2174345_5 Dihydrodipicolinate reductase, C-terminus K00215 - 1.17.1.8 0.00000000000000000000000000000000000000000000000000000256 199.0
YYD1_k127_2174345_6 YceI-like domain - - - 0.000000000000000000000000000000000000000000000000000003148 197.0
YYD1_k127_2174345_7 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.000000000000000000000000001163 121.0
YYD1_k127_2174345_8 PFAM Outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000000002757 87.0
YYD1_k127_2179205_0 Mur ligase middle domain K01924,K02558 - 6.3.2.45,6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 467.0
YYD1_k127_2179205_1 cytochrome C peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 360.0
YYD1_k127_2179205_2 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000000000000000001236 240.0
YYD1_k127_2179205_3 S-adenosyl-L-methionine-dependent methyltransferase - - - 0.00000000000000000000000000000000000000000000000000005449 195.0
YYD1_k127_2182303_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 394.0
YYD1_k127_2182303_1 Methionine aminopeptidase K01265 - 3.4.11.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005315 347.0
YYD1_k127_2182303_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001961 316.0
YYD1_k127_2182303_3 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.00000000000000000000000000000000000000000000000000000000008128 208.0
YYD1_k127_2182303_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000007594 200.0
YYD1_k127_2182303_5 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001391 187.0
YYD1_k127_2182303_6 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877 - 0.00000000000000000000000000000000001062 136.0
YYD1_k127_2182303_7 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000000000128 73.0
YYD1_k127_2188138_0 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 473.0
YYD1_k127_2188138_1 Glycosyl transferase, family 4 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001929 358.0
YYD1_k127_2188569_0 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 556.0
YYD1_k127_2188569_1 ribonucleoside-diphosphate reductase activity K00525,K21636 - 1.1.98.6,1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002579 454.0
YYD1_k127_2188569_2 Mechanosensitive ion channel K22044 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007497 327.0
YYD1_k127_2188569_3 - - - - 0.000000000000000000000000000000000000000000000001409 179.0
YYD1_k127_2199331_0 Belongs to the proline racemase family K12658 - 5.1.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006257 519.0
YYD1_k127_2199331_1 Glycine D-amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 414.0
YYD1_k127_2199331_2 TonB dependent receptor K02014 - - 0.00000006845 58.0
YYD1_k127_2222503_0 SprB repeat - - - 0.00000000000000000000000000000005372 142.0
YYD1_k127_2222503_1 oxidoreductase activity - - - 0.0000000000000000000000002342 123.0
YYD1_k127_2222503_2 SprB repeat - - - 0.0003968 53.0
YYD1_k127_2229812_0 nuclear chromosome segregation K20444 - - 0.000000000000000006395 96.0
YYD1_k127_2230679_0 Multicopper oxidase - - - 5.862e-285 886.0
YYD1_k127_2230679_1 Peptidase, S41 - - - 0.0000008285 58.0
YYD1_k127_223354_0 COGs COG0663 Carbonic anhydrase acetyltransferase isoleucine patch superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001079 245.0
YYD1_k127_223354_1 Glutamate formiminotransferase K00603,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000001959 214.0
YYD1_k127_223354_2 - - - - 0.000000000000000000000000000000000000000000000000005398 196.0
YYD1_k127_223354_3 23S rRNA-intervening sequence protein - - - 0.00000000000000000000000000000000000000000000000001382 181.0
YYD1_k127_223354_4 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000006692 139.0
YYD1_k127_223354_5 Glycosyltransferase, group 1 family protein - - - 0.00000000000000000000000000000007098 138.0
YYD1_k127_223354_6 - - - - 0.000000000000003089 84.0
YYD1_k127_223354_7 Acetyltransferase (GNAT) domain - - - 0.00000748 52.0
YYD1_k127_2239523_0 Peptidase, M23 - - - 0.00000000000000000000000000000000000000000000000000000002699 212.0
YYD1_k127_2239523_1 PFAM Tetratricopeptide - - - 0.00000000000000000000000000000000000000000000000000000003976 214.0
YYD1_k127_2239523_2 Domain of unknown function (DUF4292) - - - 0.0000000000000002125 89.0
YYD1_k127_2241968_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000005246 228.0
YYD1_k127_2241968_1 thioesterase K07107 - - 0.000000000000000000000000000000003319 132.0
YYD1_k127_2250599_0 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 315.0
YYD1_k127_2250599_1 Pfam Bacterial regulatory proteins, luxR family - - - 0.00000000000000000000000000000002333 135.0
YYD1_k127_2250599_2 Sulfatase K01130 - 3.1.6.1 0.000002231 52.0
YYD1_k127_2250599_3 - - - - 0.000002993 60.0
YYD1_k127_2253144_0 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005805 386.0
YYD1_k127_2253144_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003639 327.0
YYD1_k127_2253144_2 Ribosomal protein L11 methyltransferase K02687 - - 0.00000000000000000000000000000000000000000000000000000000000002095 224.0
YYD1_k127_2253144_3 Maf-like protein K06287 - - 0.0000000000000000000000000000000000000000000000001036 184.0
YYD1_k127_2255842_0 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000003164 223.0
YYD1_k127_2255842_1 tail collar domain protein - - - 0.00000000000000000000000000000001317 141.0
YYD1_k127_2292342_0 Cytochrome P450 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 384.0
YYD1_k127_2292342_1 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000001924 209.0
YYD1_k127_2292342_2 FAD linked oxidases, C-terminal domain - - - 0.0000000000000000000000000000000000000002181 156.0
YYD1_k127_2298117_0 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 518.0
YYD1_k127_2298117_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002493 349.0
YYD1_k127_2298117_2 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007395 323.0
YYD1_k127_2298117_3 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000000000000000000000000000000000000000007772 233.0
YYD1_k127_2298117_4 PAS domain - - - 0.000000000000000000000000000000000000000000000000000001291 194.0
YYD1_k127_2298117_5 PFAM aminotransferase, class I and II - - - 0.000002986 50.0
YYD1_k127_2298117_6 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit - - - 0.00009716 53.0
YYD1_k127_2307437_0 SPTR CHU large protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004276 501.0
YYD1_k127_2307437_1 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001975 458.0
YYD1_k127_2307437_2 Protein of unknown function (DUF998) - - - 0.000000000000000000000000000000000000000000008483 166.0
YYD1_k127_2320146_0 protein conserved in bacteria (DUF2329) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007586 570.0
YYD1_k127_232674_0 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000003374 253.0
YYD1_k127_232674_1 regulator of cell autolysis - - - 0.0000000000000000000000000007956 125.0
YYD1_k127_2340155_0 AcrB/AcrD/AcrF family K07787,K15726 - - 0.0 1049.0
YYD1_k127_2340155_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 369.0
YYD1_k127_2340155_2 AcrB/AcrD/AcrF family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002162 298.0
YYD1_k127_2340155_3 - - - - 0.00006465 48.0
YYD1_k127_2356629_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000006062 104.0
YYD1_k127_2367878_0 Pkd domain containing protein - - - 0.0007238 54.0
YYD1_k127_2374233_0 Peptidase m28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 591.0
YYD1_k127_2374233_1 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007826 431.0
YYD1_k127_2374233_2 pyrroloquinoline quinone binding K01206,K01218 - 3.2.1.51,3.2.1.78 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002423 400.0
YYD1_k127_2374233_3 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002992 372.0
YYD1_k127_2374233_4 Belongs to the universal stress protein A family - - - 0.00000000000000000000000000000000000000000000000000000000005937 218.0
YYD1_k127_2374233_5 - - - - 0.00000000000000000000000000000000000000000000009515 175.0
YYD1_k127_2374233_6 O-Methyltransferase - - - 0.000000000000000000000000000000000000000003948 166.0
YYD1_k127_2374233_7 dehydrogenase complex catalyzes the overall conversion of - - - 0.0000000000000000000000000000000001969 135.0
YYD1_k127_2374233_8 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.0000000000000007631 80.0
YYD1_k127_2385324_0 SprB repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009707 560.0
YYD1_k127_2385324_1 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004193 255.0
YYD1_k127_2385324_2 PFAM Outer membrane protein, OmpA MotB, C-terminal - - - 0.000000000000000000007248 100.0
YYD1_k127_2385324_3 protein related to plant photosystem II stability assembly factor - - - 0.0000218 56.0
YYD1_k127_2385859_0 cyclic nucleotide-binding - - - 0.0000000000000000000000000000000000000000009789 161.0
YYD1_k127_2385859_1 Cytochrome c - - - 0.00000000000000000000000000000002249 129.0
YYD1_k127_2385859_2 Outer membrane protein beta-barrel domain - - - 0.000001122 58.0
YYD1_k127_2398226_0 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007611 373.0
YYD1_k127_2398226_1 Conserved repeat domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004816 272.0
YYD1_k127_2411796_0 peptidase S9 prolyl oligopeptidase active site domain protein - - - 1.972e-231 747.0
YYD1_k127_2411796_1 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000001478 187.0
YYD1_k127_2420814_0 TonB-dependent receptor plug domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001843 599.0
YYD1_k127_2420814_1 alpha beta - - - 0.000000000000000000000000000000000000000000000000005347 189.0
YYD1_k127_2424782_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003687 524.0
YYD1_k127_2424782_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000002452 158.0
YYD1_k127_2425887_0 ATPase (AAA K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001501 539.0
YYD1_k127_2425887_1 SPTR CHU large protein - - - 0.000000000000000000002467 106.0
YYD1_k127_2430434_0 Esterase PHB depolymerase K03932 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004156 277.0
YYD1_k127_2430434_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000005614 243.0
YYD1_k127_2430434_2 Head domain of trimeric autotransporter adhesin K21449 - - 0.00000000000000000000000000000000000204 153.0
YYD1_k127_2430434_3 Histidine kinase - - - 0.0000000000000000000000000000000006979 133.0
YYD1_k127_2431206_0 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 505.0
YYD1_k127_2431206_1 flavoprotein K07007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002791 417.0
YYD1_k127_2431206_2 Saccharopine dehydrogenase C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002628 366.0
YYD1_k127_2431206_3 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000000000000000000002475 121.0
YYD1_k127_2431206_4 VTC domain - - - 0.00000000000000000000007041 108.0
YYD1_k127_2433860_0 Heat shock protein Hsp90 K04079 - - 7.357e-248 779.0
YYD1_k127_2433860_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 439.0
YYD1_k127_2433860_2 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000006425 259.0
YYD1_k127_2446828_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 0.0 1037.0
YYD1_k127_2446828_1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation K00632 - 2.3.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 589.0
YYD1_k127_2446828_2 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 525.0
YYD1_k127_2446828_3 chaperone-mediated protein folding K08309 - - 0.000000000000000000000000000000000000000000000000000000000000000000000625 252.0
YYD1_k127_2446828_4 TonB family domain protein - - - 0.000000000000000000000000000000000000000000000000000002705 200.0
YYD1_k127_2446828_5 protein conserved in bacteria - - - 0.00000000000000000000000000000000000000000000000000001782 192.0
YYD1_k127_2467564_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004326 445.0
YYD1_k127_2467564_1 Domain of unknown function (DUF5103) - - - 0.0000000000000000000000000000000000000000000000000000000000000000007307 241.0
YYD1_k127_2467564_2 outer membrane efflux protein K12340 - - 0.0000000000000000000000000000000000000000000000000000000001804 222.0
YYD1_k127_2467564_3 protein conserved in bacteria K09931 - - 0.00000000000000000000000000000000000000004068 158.0
YYD1_k127_2469156_0 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001061 374.0
YYD1_k127_2486233_0 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II K01835 - 5.4.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 403.0
YYD1_k127_2486233_1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000000002904 252.0
YYD1_k127_2486233_2 Protein of unknown function (DUF2867) - - - 0.00000000000000000000000000000000000000000000000000000000000346 211.0
YYD1_k127_2486233_3 Phosphoglucomutase phosphomannomutase, alpha beta alpha domain II - - - 0.000000000000000000000000000000000000000000000000000006958 192.0
YYD1_k127_2486233_4 - - - - 0.00000000000000000000000000000000000000000003184 169.0
YYD1_k127_2486233_5 Broad-Complex, Tramtrack and Bric a brac - GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070647,GO:0071704,GO:1901564,GO:1902494,GO:1990234 - 0.00000009424 62.0
YYD1_k127_2493776_0 Protein of unknown function (DUF1211) - - - 0.00000000000000000000000000000000112 137.0
YYD1_k127_2493776_1 - - - - 0.000000000000000001358 90.0
YYD1_k127_2493776_2 domain protein - - - 0.00000000003407 70.0
YYD1_k127_2493776_3 - - - - 0.00002287 46.0
YYD1_k127_2502589_0 Peptidase family C25 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 560.0
YYD1_k127_2503294_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009181 477.0
YYD1_k127_2503294_1 Belongs to the peptidase S8 family K13275 - - 0.00000000000000000000000000000004439 139.0
YYD1_k127_2506338_0 Amidohydrolase family - - - 3.767e-273 847.0
YYD1_k127_2506338_1 PFAM peptidase T2 asparaginase 2 K01444,K13051 - 3.4.19.5,3.5.1.26 0.0000000000009271 72.0
YYD1_k127_2509507_0 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000004228 205.0
YYD1_k127_2509507_1 Cytochrome c - - - 0.0000000000000000000149 95.0
YYD1_k127_2509507_2 4Fe-4S ferredoxin iron-sulfur binding domain protein - - - 0.0002039 48.0
YYD1_k127_2516926_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.0000000000000000000000000000000000000000000000000000000000000000000000002801 252.0
YYD1_k127_2516926_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000003576 141.0
YYD1_k127_2516926_2 amine dehydrogenase activity - - - 0.000000000000000000000001644 113.0
YYD1_k127_2526369_0 Male sterility protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 352.0
YYD1_k127_2526369_1 PFAM Starch synthase, catalytic domain K00703 - 2.4.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002121 339.0
YYD1_k127_2526369_2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007197 267.0
YYD1_k127_2526369_3 Domain of unknown function (DUF4270) - - - 0.0000000000000000000000000000000000007942 156.0
YYD1_k127_2539262_0 PFAM Chloroplast import component protein (Tic20) - - - 0.00000000000000000000001015 103.0
YYD1_k127_2539262_1 Carboxypeptidase regulatory-like domain - - - 0.000000002206 69.0
YYD1_k127_2543592_0 TonB-dependent receptor plug domain K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003186 304.0
YYD1_k127_2546574_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K17722 - 1.3.1.1 0.0 1001.0
YYD1_k127_2546574_1 PAP2 superfamily - - - 1.846e-203 646.0
YYD1_k127_2546574_2 Pyruvate ferredoxin/flavodoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002905 469.0
YYD1_k127_2566362_0 Thioredoxin reductase K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001823 495.0
YYD1_k127_2566362_1 Subtilase family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 313.0
YYD1_k127_2566362_2 Fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.000000000000004415 75.0
YYD1_k127_2568298_0 Photosynthesis system II assembly factor YCF48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000004145 244.0
YYD1_k127_2568298_1 Domain of unknown function (DUF1905) - - - 0.000000000000000000000000000000000003947 138.0
YYD1_k127_2572258_0 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006647 282.0
YYD1_k127_2572258_1 COGs COG2208 Serine phosphatase RsbU regulator of sigma subunit - - - 0.000000000000000000000000001304 124.0
YYD1_k127_2583305_0 PAP2 superfamily - - - 2.774e-200 635.0
YYD1_k127_2583305_1 Y_Y_Y domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002849 554.0
YYD1_k127_2583305_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004188 304.0
YYD1_k127_2583305_3 Domain of unknown function (DUF4465) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005288 266.0
YYD1_k127_2583305_4 Response regulator receiver domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002265 260.0
YYD1_k127_2583305_5 YceI-like domain - - - 0.0000000000000000000000000000000000000000000000002886 183.0
YYD1_k127_2583305_6 TonB-dependent receptor plug K02014 - - 0.000000000000000000000000000000000000000000000001437 189.0
YYD1_k127_2593447_0 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.0 1082.0
YYD1_k127_2593447_1 Involved in the binding of tRNA to the ribosomes K02946 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000003122 199.0
YYD1_k127_2593447_2 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.0000000000000000000000000002086 115.0
YYD1_k127_2612017_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005782 284.0
YYD1_k127_2612017_1 long-chain fatty acid transport protein - - - 0.0000000000000000000000000000000000000000000000000000002147 204.0
YYD1_k127_2614903_0 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) B subunit K02622 - - 1.946e-299 930.0
YYD1_k127_2614903_1 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005437 445.0
YYD1_k127_2614903_2 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000001239 124.0
YYD1_k127_2614903_4 toxin biosynthetic process K03558 - - 0.000000000000009863 81.0
YYD1_k127_2616673_0 Fatty acid hydroxylase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004624 248.0
YYD1_k127_2616673_1 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.000000000000000000000000000000000000000000000000000000000001493 214.0
YYD1_k127_2616673_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000001013 176.0
YYD1_k127_2633664_0 Protein of unknown function (DUF998) - - - 0.0000000000000000000000000000000000000000000000000000000000001178 227.0
YYD1_k127_2633664_1 gag-polyprotein putative aspartyl protease - - - 0.000000000000000000000000000000000000000000000000000000000008314 217.0
YYD1_k127_2633664_2 - - - - 0.000000000000000000000000000000000000000000002065 175.0
YYD1_k127_2638268_0 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004998 449.0
YYD1_k127_2638268_1 Asparagine synthase K01953 - 6.3.5.4 0.000000000000000000000000000000000000000000000008217 177.0
YYD1_k127_264136_0 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007417 253.0
YYD1_k127_264136_1 protein secretion - - - 0.0000000000000000000000000000002314 141.0
YYD1_k127_264136_2 oxidoreductase activity - - - 0.000000000000000000009918 107.0
YYD1_k127_2648889_0 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 613.0
YYD1_k127_2648889_1 protein conserved in bacteria (DUF2179) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004541 369.0
YYD1_k127_2648889_2 NAD dependent epimerase dehydratase family K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003756 289.0
YYD1_k127_2648889_3 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005234 272.0
YYD1_k127_2648889_4 Psort location CytoplasmicMembrane, score 10.00 K12343 - 1.3.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000002102 273.0
YYD1_k127_2648889_5 - - - - 0.000000000000009866 75.0
YYD1_k127_2650696_0 TonB dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 307.0
YYD1_k127_2651670_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004037 475.0
YYD1_k127_2651670_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 443.0
YYD1_k127_2653297_0 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005509 301.0
YYD1_k127_2653297_1 outer membrane efflux protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002207 278.0
YYD1_k127_2653297_2 WHG domain - - - 0.00000000000000000008506 92.0
YYD1_k127_2661503_0 peptidase M42 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 520.0
YYD1_k127_2661503_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009447 337.0
YYD1_k127_2661503_2 peptidase M1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004184 333.0
YYD1_k127_2661503_3 deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 329.0
YYD1_k127_2661503_4 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762,K13421 - 2.4.2.10,4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000003751 231.0
YYD1_k127_2661503_5 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.000000000000000000000000000000000000000000000000000000000000005016 221.0
YYD1_k127_2661503_6 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000006493 202.0
YYD1_k127_2661503_7 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000000000000000000003224 168.0
YYD1_k127_2661503_8 - - - - 0.0000000000000000000000000000000000000002011 156.0
YYD1_k127_2671019_0 photoreceptor activity K06370 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 352.0
YYD1_k127_2671019_1 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000005246 72.0
YYD1_k127_2671019_2 Subtilase family - - - 0.0000002181 55.0
YYD1_k127_2671495_0 membrane protein involved in D-alanine export - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 608.0
YYD1_k127_2671495_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001217 289.0
YYD1_k127_2671495_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004075 287.0
YYD1_k127_2671495_3 TIGRFAM Peroxiredoxin, osmotically inducible protein C, subgroup K04063 - - 0.00000000000000000000000000000000000000000000000007124 182.0
YYD1_k127_2671495_4 Involved in DNA repair and RecF pathway recombination K03584 - - 0.0000000000000000000000000000000000000000001708 168.0
YYD1_k127_2671495_6 - - - - 0.000000878 60.0
YYD1_k127_2680311_0 TIGRFAM formate dehydrogenase, alpha subunit, archaeal-type K00123,K18332 - 1.12.1.3,1.17.1.9 0.0 1051.0
YYD1_k127_2680311_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 4.808e-276 857.0
YYD1_k127_2680311_2 FdhD/NarQ family K02379 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002434 296.0
YYD1_k127_2680311_3 MoaE protein K03635 - 2.8.1.12 0.00000000000000000000000000000000000000000000000000000002173 200.0
YYD1_k127_2680311_4 ThiS family K03636 - - 0.00000000000000004452 85.0
YYD1_k127_2689651_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 7.966e-229 714.0
YYD1_k127_2689651_1 Carboxypeptidase regulatory-like domain - - - 0.0000000000000000000000000000000000000000000000000000003966 199.0
YYD1_k127_2689651_2 Endoribonuclease L-PSP - - - 0.000000000000000000000000000000000000002166 149.0
YYD1_k127_2689651_3 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.0000000000000000000000000002332 116.0
YYD1_k127_2689651_4 - - - - 0.0000000000000003139 85.0
YYD1_k127_2693440_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001958 568.0
YYD1_k127_2693440_1 COG2303 Choline dehydrogenase and related - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004956 428.0
YYD1_k127_2693440_2 TfoX N-terminal domain - - - 0.000000000000000000000000000000000000009608 148.0
YYD1_k127_2693971_0 COGs COG3752 membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003472 331.0
YYD1_k127_2693971_1 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0000000000005127 77.0
YYD1_k127_2697747_0 Superfamily I DNA and RNA K10742 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002019 458.0
YYD1_k127_2697747_1 PFAM Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001383 278.0
YYD1_k127_2703828_0 usher protein - - - 0.000000000000000000000000000000000000000000000000000000000001636 229.0
YYD1_k127_2722354_0 Prolyl endopeptidase K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002369 415.0
YYD1_k127_2723241_0 Penicillin-binding protein 2 K05515 - 3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008946 587.0
YYD1_k127_2723241_1 Cell shape determining protein MreB Mrl K03569 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007642 553.0
YYD1_k127_2723241_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001 379.0
YYD1_k127_2723241_3 Peptidase M16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001354 296.0
YYD1_k127_2723241_4 shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000000000000000000000003836 203.0
YYD1_k127_2723241_5 rod shape-determining protein MreD - - - 0.00000000000000003032 88.0
YYD1_k127_2741432_0 Pkd domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003359 334.0
YYD1_k127_2741432_1 regulation of response to stimulus - - - 0.00000000000000000000000000000000000000000000000000000000000000000001032 252.0
YYD1_k127_274283_0 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 - 4.3.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007366 300.0
YYD1_k127_274283_1 translation initiation inhibitor, yjgF family - - - 0.000000000000000000000000000000000000000000003443 167.0
YYD1_k127_274283_2 peptidase M42 - - - 0.000000000000000000000000000000000000000009901 155.0
YYD1_k127_274283_3 PFAM UbiA prenyltransferase family - - - 0.000000000000000000000000000717 124.0
YYD1_k127_274283_4 Pkd domain containing protein - - - 0.000000000000000000000000005842 126.0
YYD1_k127_2745978_0 DNA helicase K03657 - 3.6.4.12 2.475e-253 799.0
YYD1_k127_2745978_1 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000002877 199.0
YYD1_k127_2745978_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.000000000000000000000000000000000000000000001219 168.0
YYD1_k127_2745978_3 - - - - 0.0000000000000000000000000001096 117.0
YYD1_k127_2745978_4 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000001451 119.0
YYD1_k127_2745978_5 Galactose oxidase, central domain - - - 0.000287 53.0
YYD1_k127_2751752_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003201 339.0
YYD1_k127_2751752_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000006884 233.0
YYD1_k127_2751752_2 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.0000000000000000000000004064 121.0
YYD1_k127_2751752_3 GGDEF domain - - - 0.00000000000000000000003155 106.0
YYD1_k127_2751752_4 - - - - 0.0000000000000001834 89.0
YYD1_k127_2754394_0 ABC transporter K18890 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 552.0
YYD1_k127_2759771_0 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 444.0
YYD1_k127_2759771_1 PFAM GCN5-related N-acetyltransferase K00663 - 2.3.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000992 246.0
YYD1_k127_2759771_2 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000003084 222.0
YYD1_k127_2759771_3 Cupin domain - - - 0.0000000000000000000000000000000000000000000000000000004365 201.0
YYD1_k127_2759771_4 Immunoglobulin-like domain of bacterial spore germination - - - 0.00000000000000000000000000000000000000000005414 166.0
YYD1_k127_2759771_5 ATP-binding region ATPase domain protein - - - 0.000000000000000000003327 108.0
YYD1_k127_2759771_6 Protein of unknown function (DUF3010) - - - 0.0000000000000001194 85.0
YYD1_k127_2759771_7 Domain of unknown function (DU1801) - - - 0.0006911 42.0
YYD1_k127_2771335_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 2.058e-242 759.0
YYD1_k127_2779279_0 Belongs to the glycosyl hydrolase 5 (cellulase A) family - - - 2.284e-234 750.0
YYD1_k127_2779279_1 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132 386.0
YYD1_k127_2779279_2 TonB dependent receptor K21573 - - 0.0000000000000000000000000000000000000000000000000000000000000008865 224.0
YYD1_k127_2782821_0 PFAM Radical SAM - - - 1.015e-299 936.0
YYD1_k127_2782821_1 Belongs to the arylamine N-acetyltransferase family K00675 - 2.3.1.118 0.0000000000000000000000000000000000000000000000000000000000001029 219.0
YYD1_k127_2782821_2 - - - - 0.00000000000000000000000000000573 124.0
YYD1_k127_278317_0 Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na( ) movement across the membrane K15987 - 3.6.1.1 0.0 1167.0
YYD1_k127_278317_1 glucose sorbosone - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001073 265.0
YYD1_k127_278317_2 - - - - 0.0000000000000000000000000000000000000000348 159.0
YYD1_k127_278317_3 The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2) K00658 - 2.3.1.61 0.000000000000000000000000004567 110.0
YYD1_k127_278317_4 Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides K03642 - - 0.00000000000000000000000001147 113.0
YYD1_k127_2799289_0 Methylenetetrahydrofolate reductase K00297 - 1.5.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004392 368.0
YYD1_k127_2799289_1 Gliding motility-associated C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000003098 212.0
YYD1_k127_2799289_2 Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain - - - 0.0000000000000000007539 88.0
YYD1_k127_2812313_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000441 282.0
YYD1_k127_2812313_1 Pseudouridine synthase K06177,K06180 - 5.4.99.23,5.4.99.28,5.4.99.29 0.0000000000000000000000000000000000000000000000000000000000000005996 227.0
YYD1_k127_2812313_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K08314 - 2.2.1.2 0.00000000000000000000000000000000000000000002325 163.0
YYD1_k127_2812313_3 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.00000000000000000009195 90.0
YYD1_k127_2826898_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 4.686e-230 717.0
YYD1_k127_2826898_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000002769 131.0
YYD1_k127_284210_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 385.0
YYD1_k127_284210_1 Glycosyl transferase family 2 - - - 0.000000000000000005425 85.0
YYD1_k127_284210_2 PFAM Vacuole effluxer Atg22 like K06902 - - 0.0007843 43.0
YYD1_k127_28443_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000141 328.0
YYD1_k127_28443_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001919 317.0
YYD1_k127_28443_2 TonB-dependent receptor plug K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000001547 259.0
YYD1_k127_28443_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000003955 209.0
YYD1_k127_28443_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 - 1.6.5.3 0.000000000000000000000000000000000000000000238 161.0
YYD1_k127_2845780_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0 1021.0
YYD1_k127_2848853_0 proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000249 506.0
YYD1_k127_2848853_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001638 370.0
YYD1_k127_2848853_2 peptide-methionine (R)-S-oxide reductase K07305 - 1.8.4.12 0.00000000000000000000000000000000000000000000000000000000000008257 214.0
YYD1_k127_2850496_0 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003969 290.0
YYD1_k127_2850496_1 SPTR CHU large protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002742 273.0
YYD1_k127_2860554_0 Bacterial protein of unknown function (DUF853) K06915 - - 4.695e-209 662.0
YYD1_k127_2860554_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009439 272.0
YYD1_k127_28908_0 PFAM Formylglycine-generating sulfatase enzyme - - - 5.56e-200 629.0
YYD1_k127_28908_1 Gliding motility-associated protein GldM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 422.0
YYD1_k127_28908_2 TIGRFAM gliding motility associated - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002702 297.0
YYD1_k127_28908_3 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000003931 258.0
YYD1_k127_28908_4 TIGRFAM gliding motility-associated protein GldL - - - 0.00000000000000000000000000000000000000000000000000002484 196.0
YYD1_k127_28908_5 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000002947 137.0
YYD1_k127_28908_6 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000005648 136.0
YYD1_k127_2906080_0 exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 7.338e-204 643.0
YYD1_k127_2906080_1 PFAM Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002096 405.0
YYD1_k127_2906080_2 TIGRFAM succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 - 1.3.5.1,1.3.5.4 0.00000000000000002315 82.0
YYD1_k127_2906309_0 Isocitrate dehydrogenase K00031 - 1.1.1.42 1.117e-221 692.0
YYD1_k127_2906309_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 519.0
YYD1_k127_2906309_2 AsmA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 422.0
YYD1_k127_2906309_3 Phosphohydrolase - - - 0.00000000000000000000000000000000000000000006513 167.0
YYD1_k127_2906309_4 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000000001602 148.0
YYD1_k127_2906309_5 DinB family - - - 0.00000000000000000000000000003298 124.0
YYD1_k127_2906309_6 C-terminal domain of CHU protein family - - - 0.000000000926 60.0
YYD1_k127_2909456_0 phenazine biosynthesis protein PhzF - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001851 327.0
YYD1_k127_2909456_1 POT family K03305 - - 0.0000000000000000000000000000001177 124.0
YYD1_k127_2909456_2 Protein of unknown function (DUF3108) - - - 0.00000000000000006739 81.0
YYD1_k127_2919680_0 Methylase involved in ubiquinone menaquinone biosynthesis K07755 - 2.1.1.137 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002897 467.0
YYD1_k127_2919680_1 Pyruvate kinase, barrel domain K00873 - 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 419.0
YYD1_k127_2919680_2 Chaperone of endosialidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000006828 305.0
YYD1_k127_2919680_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000002185 236.0
YYD1_k127_2919680_4 Chaperone of endosialidase - - - 0.00000000000000000000000000000000000000000005024 184.0
YYD1_k127_2919680_5 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000008235 161.0
YYD1_k127_2919680_6 - - - - 0.0000000000000000005903 91.0
YYD1_k127_2919680_7 Protein of unknown function (DUF3494) - - - 0.000000000001487 81.0
YYD1_k127_2919680_8 Hep Hag repeat protein - - - 0.00000000002783 78.0
YYD1_k127_2919680_9 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 0.000002731 53.0
YYD1_k127_2935754_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 3.178e-318 985.0
YYD1_k127_2935754_1 Legume lectin domain - - - 0.0000000000000000000000000000000000000000000000000000000000000008469 233.0
YYD1_k127_2935754_2 Peptide-N-glycosidase F, C terminal - - - 0.00000000000000000000000000000000000000000002607 169.0
YYD1_k127_2966703_0 Protein of unknown function (DUF3641) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000282 467.0
YYD1_k127_2966703_1 ATPases associated with a variety of cellular activities K02049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002242 388.0
YYD1_k127_2966703_2 NMT1-like family K02051 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006765 381.0
YYD1_k127_2966703_3 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005009 348.0
YYD1_k127_2966703_4 Binding-protein-dependent transport system inner membrane component K02050,K15577 - - 0.000000000000000000000000000000000000000000000000000000000000000000004673 247.0
YYD1_k127_2966703_5 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000000000000000000000008337 213.0
YYD1_k127_2966703_6 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000188 166.0
YYD1_k127_2970792_0 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001405 400.0
YYD1_k127_2970792_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0030488,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140101,GO:0140102,GO:1901360 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003784 331.0
YYD1_k127_2974650_0 Motility related/secretion protein - - - 0.0 1279.0
YYD1_k127_2976684_0 Belongs to the PdxA family K00097 - 1.1.1.262 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 423.0
YYD1_k127_2976684_1 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 338.0
YYD1_k127_2976684_2 COG1705 Muramidase (flagellum-specific) - - - 0.000000000000000000000000000000000000000001287 164.0
YYD1_k127_2978690_0 Phosphoglucomutase phosphomannomutase alpha beta alpha domain I K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003098 497.0
YYD1_k127_2978690_1 PFAM aminotransferase class V K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006927 396.0
YYD1_k127_2978690_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000002459 261.0
YYD1_k127_2978690_3 Phosphoesterase PA-phosphatase related K19302 - 3.6.1.27 0.00000000000000000000000000000003572 130.0
YYD1_k127_2978690_4 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000006914 89.0
YYD1_k127_2980211_0 Electron transfer flavoprotein K03522 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001378 386.0
YYD1_k127_2980211_1 PFAM Uncharacterised ACR, COG1259 K08999 - - 0.000000000000000000000000000000000000000000000000000000000000000000001064 241.0
YYD1_k127_2980211_2 - - - - 0.0000000000000000000000000000000000001118 143.0
YYD1_k127_2980211_3 peptidase activity, acting on L-amino acid peptides K20276 - - 0.000000000000000005418 97.0
YYD1_k127_2980211_4 Electron transfer flavoprotein domain K03521 - - 0.0000005215 51.0
YYD1_k127_2980211_5 Alpha amylase, catalytic domain - - - 0.0006441 52.0
YYD1_k127_2981811_0 WD40-like Beta Propeller Repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 361.0
YYD1_k127_2981811_1 Peptidase, M28 - - - 0.00000000000000000000000000008979 121.0
YYD1_k127_2993706_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008423 485.0
YYD1_k127_2993706_1 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 308.0
YYD1_k127_2993706_2 Inorganic pyrophosphatase K01507 - 3.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009152 276.0
YYD1_k127_2993706_3 - - - - 0.00000000000114 74.0
YYD1_k127_2997048_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000001313 254.0
YYD1_k127_2997048_1 PFAM Acyl-CoA reductase (LuxC) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004965 250.0
YYD1_k127_3000809_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 328.0
YYD1_k127_3000809_1 Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane - - - 0.00000000000000000000000000000000000000000000000003368 193.0
YYD1_k127_3000809_2 Eukaryotic-type carbonic anhydrase K01674 - 4.2.1.1 0.000000000000000000000000000000000000004796 150.0
YYD1_k127_3000809_3 Uncharacterized protein family, UPF0114 - - - 0.00000000000000000002402 97.0
YYD1_k127_3003161_0 Aldolase K11645 - 4.1.2.13 4.374e-204 639.0
YYD1_k127_3003161_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.00000000000000000000000000002971 118.0
YYD1_k127_3003161_2 oxidoreductase activity - - - 0.0000000000000000000000004927 112.0
YYD1_k127_3009390_0 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000001202 219.0
YYD1_k127_3009390_1 - - - - 0.000000000000000000000000000000000000002461 152.0
YYD1_k127_3009390_2 - - - - 0.000000000000000000000000000001096 128.0
YYD1_k127_3009390_3 Protein of unknown function, DUF481 - - - 0.00000000000000006554 81.0
YYD1_k127_3011806_0 Two component regulator three Y - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 353.0
YYD1_k127_3011806_1 phenazine biosynthesis protein PhzF family - - - 0.0000000000000000000000000000000000000001795 154.0
YYD1_k127_3016472_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.0 1032.0
YYD1_k127_3016472_1 PFAM Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 310.0
YYD1_k127_3016472_2 Oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 303.0
YYD1_k127_3016472_3 - - - - 0.00000000000000000000000000000000000000000000302 175.0
YYD1_k127_3016472_4 PFAM ABC transporter K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000003514 166.0
YYD1_k127_3016472_5 Transcriptional regulator - - - 0.000000000000000000000000000006377 122.0
YYD1_k127_3016472_6 Bacterial sugar transferase - - - 0.0000000000000000000000005625 107.0
YYD1_k127_3016472_7 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.000000000000000000004102 96.0
YYD1_k127_3023737_0 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 7.464e-227 709.0
YYD1_k127_3023737_1 PAP2 superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001673 508.0
YYD1_k127_3023737_2 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.0000000000002434 72.0
YYD1_k127_3024091_0 YceI-like domain - - - 0.000000000000000000000000000000000000000000000000000000001203 205.0
YYD1_k127_3024091_1 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000000000000000000000003364 196.0
YYD1_k127_3024091_2 transcriptional regulator - - - 0.00000000000000000000000000000000000004072 146.0
YYD1_k127_3024091_3 PFAM SMP-30 Gluconolaconase - - - 0.00000000000000000000000001215 124.0
YYD1_k127_3024091_4 - - - - 0.000000000000000000000002869 108.0
YYD1_k127_3028931_0 receptor K02014 - - 0.0 1227.0
YYD1_k127_3040645_0 Bacterial membrane protein YfhO - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 416.0
YYD1_k127_3040645_1 polysaccharide biosynthetic process K03328 - - 0.0000000001486 69.0
YYD1_k127_304234_0 Sigma-54 interaction domain K03405 - 6.6.1.1 1.052e-205 649.0
YYD1_k127_304234_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005063 615.0
YYD1_k127_304234_2 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007988 539.0
YYD1_k127_304234_3 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000000000000000000000000000001759 197.0
YYD1_k127_304234_4 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000005221 148.0
YYD1_k127_3047077_0 glycosyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003478 263.0
YYD1_k127_3047077_1 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000179 245.0
YYD1_k127_3047077_2 Bacterial-like globin K06886 - - 0.00000000000000000000000000000000000226 141.0
YYD1_k127_3051840_0 Proprotein convertase P-domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005161 631.0
YYD1_k127_3054824_0 Y_Y_Y domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006337 540.0
YYD1_k127_3054824_1 LytTr DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003218 312.0
YYD1_k127_3065456_0 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 8.951e-205 649.0
YYD1_k127_3065456_1 thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004466 277.0
YYD1_k127_3065456_2 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000005023 196.0
YYD1_k127_3098580_0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00658 - 2.3.1.61 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001276 524.0
YYD1_k127_3098580_1 WD40-like Beta Propeller Repeat - - - 0.00000000000000000000002293 111.0
YYD1_k127_3098580_2 WD40-like Beta Propeller Repeat - - - 0.00000000000000000002083 97.0
YYD1_k127_3112669_0 WG containing repeat - - - 0.00000000000000000000000000000000000000000000000000000000003929 220.0
YYD1_k127_3112669_1 gamma-glutamyltransferase K00681 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0006082,GO:0006508,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016787,GO:0019538,GO:0019752,GO:0030288,GO:0030313,GO:0031975,GO:0034722,GO:0036374,GO:0042597,GO:0043094,GO:0043102,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0070011,GO:0071704,GO:0097264,GO:0140096,GO:1901564,GO:1901566,GO:1901576 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000002224 194.0
YYD1_k127_3112669_2 START domain - - - 0.00000000000000000003633 98.0
YYD1_k127_3112669_3 - - - - 0.00000004783 61.0
YYD1_k127_3123427_0 Methionine synthase K00548 - 2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003998 479.0
YYD1_k127_3123427_1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases K22441 GO:0003674,GO:0003824,GO:0004145,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008080,GO:0008150,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0043937,GO:0043939,GO:0044424,GO:0044464,GO:0048519,GO:0050789,GO:0050793,GO:0051093,GO:0065007 2.3.1.57 0.000000000000000000000000000000000000000000000001893 182.0
YYD1_k127_3124090_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster - - - 3.738e-258 806.0
YYD1_k127_3124090_1 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000009859 245.0
YYD1_k127_3124090_2 Domain of unknown function (DUF4440) - - - 0.0000000000000000000000000003085 121.0
YYD1_k127_3124090_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000004359 91.0
YYD1_k127_3124090_4 HEPN domain - - - 0.00000000000006872 76.0
YYD1_k127_3124090_5 WD40-like Beta Propeller Repeat K03641 - - 0.00001591 47.0
YYD1_k127_313359_0 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 516.0
YYD1_k127_313359_1 Ribonuclease H-like K09776 - - 0.000000000000000000000000000000000000000000000000000000000006558 209.0
YYD1_k127_3138111_0 Belongs to the formate--tetrahydrofolate ligase family K01938 GO:0003674,GO:0003824,GO:0004329,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006144,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009112,GO:0009113,GO:0009256,GO:0009257,GO:0009396,GO:0009987,GO:0016053,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0016874,GO:0016879,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.3 6.021e-248 778.0
YYD1_k127_3138111_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000006571 56.0
YYD1_k127_3138111_2 domain, Protein K07277,K07278,K21449 - - 0.000001386 58.0
YYD1_k127_3138320_0 Outer membrane protein beta-barrel domain - - - 1.827e-268 839.0
YYD1_k127_3138320_1 - - - - 0.00000000000000000000000000001946 123.0
YYD1_k127_3165224_0 DNA segregation ATPase FtsK SpoIIIE and related K03466 - - 1.979e-289 909.0
YYD1_k127_3165224_1 GH3 auxin-responsive promoter - - - 8.598e-196 622.0
YYD1_k127_3165224_10 ABC-type multidrug transport system, ATPase and permease K06147 - - 0.00007774 45.0
YYD1_k127_3165224_2 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 466.0
YYD1_k127_3165224_3 Domain of unknown function (DUF4835) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002873 248.0
YYD1_k127_3165224_4 outer membrane assembly lipoprotein YfiO K05807 - - 0.00000000000000000000000000000000000000000000000000000000000000005643 231.0
YYD1_k127_3165224_5 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000004109 212.0
YYD1_k127_3165224_6 1-aminocyclopropane-1-carboxylate deaminase K01505 - 3.5.99.7 0.00000000000000000000000000000000000000000000000001592 191.0
YYD1_k127_3165224_7 RNA polymerase - - - 0.00000000000000000000000000000006662 128.0
YYD1_k127_3165224_9 PFAM Outer membrane lipoprotein carrier protein LolA K03634 - - 0.00000000000001473 82.0
YYD1_k127_3178077_0 Glycosyl hydrolase family 65 central catalytic domain protein K00691,K05342 - 2.4.1.64,2.4.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 503.0
YYD1_k127_3178077_1 Histidine kinase K07636 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007893 354.0
YYD1_k127_3178077_2 beta-phosphoglucomutase K01838 - 5.4.2.6 0.00000000000000000000000000000000000000000000000000000544 214.0
YYD1_k127_3178077_3 Phosphoglycerate mutase family K08296 - - 0.000000000000000000000000000000000000007531 150.0
YYD1_k127_3179281_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 8.634e-253 800.0
YYD1_k127_3179281_1 ABC 3 transport family K11708,K11709 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005504 486.0
YYD1_k127_3179281_2 PFAM Ppx GppA phosphatase K01524 - 3.6.1.11,3.6.1.40 0.00000000000000000000000000000000000000000000000000000000000000009922 232.0
YYD1_k127_3179281_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000000000000000000000001038 139.0
YYD1_k127_3185106_0 Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA K01886 - 6.1.1.18 2.183e-237 745.0
YYD1_k127_3185106_1 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004287 448.0
YYD1_k127_3185106_2 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
YYD1_k127_3185106_3 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000002287 250.0
YYD1_k127_3185106_4 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000004025 187.0
YYD1_k127_3185106_5 - - - - 0.000000000000000000000186 105.0
YYD1_k127_3185106_6 - - - - 0.0000000008237 67.0
YYD1_k127_31916_0 peptidase S9 prolyl oligopeptidase active site domain protein - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0042597,GO:0042802,GO:0042803,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044464,GO:0046983,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 3.321e-274 857.0
YYD1_k127_31916_1 major facilitator K16211 - - 2.678e-223 702.0
YYD1_k127_31916_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001018 280.0
YYD1_k127_31916_3 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000000000000000000000000000000000004719 167.0
YYD1_k127_31916_4 - - - - 0.0000000000000000000000000001336 121.0
YYD1_k127_31916_5 Pfam ORF6N domain - - - 0.00004266 50.0
YYD1_k127_3204312_0 Baseplate J-like protein - - - 0.0 1099.0
YYD1_k127_3204312_1 protein of Photorhabdus and some similarities with - - - 1.207e-267 855.0
YYD1_k127_3204312_2 Phage late control gene D protein (GPD) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009069 590.0
YYD1_k127_3204312_3 positive regulation of growth rate - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005463 310.0
YYD1_k127_3204312_4 T4-like virus tail tube protein gp19 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000921 250.0
YYD1_k127_3204312_5 T4-like virus tail tube protein gp19 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004947 238.0
YYD1_k127_3204312_6 Gene 25-like lysozyme K06903 - - 0.00000000000000000000000000000000000000000000000000005735 197.0
YYD1_k127_3204312_7 Phage late control gene D protein (GPD) - - - 0.00000000000000000000000000000000000000000002084 164.0
YYD1_k127_3204312_8 PAAR repeat-containing protein - - - 0.0000000000000000000000000000000000353 135.0
YYD1_k127_3215911_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0030163,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0044238,GO:0051301,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003618 584.0
YYD1_k127_3215911_1 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000448 503.0
YYD1_k127_3215911_2 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002755 365.0
YYD1_k127_3215911_3 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000000000000000000000000000000000000000000000000000000000006453 241.0
YYD1_k127_3215911_4 Trigger factor K03545 - - 0.0000000000000000000008861 101.0
YYD1_k127_3215911_5 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 - - 0.00000000006295 73.0
YYD1_k127_3215911_6 - - - - 0.0001427 48.0
YYD1_k127_3217080_0 Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid K00486 - 1.14.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001927 445.0
YYD1_k127_3217080_1 Calcineurin-like phosphoesterase K03269 - 3.6.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002018 329.0
YYD1_k127_3217080_2 Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate K00452 - 1.13.11.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000005961 269.0
YYD1_k127_3217080_3 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins - - - 0.000000000000000000000000000000000005588 147.0
YYD1_k127_3217080_4 - - - - 0.000000000000000001554 98.0
YYD1_k127_3217080_5 PFAM Alpha amylase, catalytic K01176,K01208 GO:0000272,GO:0000287,GO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0004556,GO:0005488,GO:0005509,GO:0005575,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0006073,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009987,GO:0016020,GO:0016052,GO:0016160,GO:0016787,GO:0016798,GO:0019867,GO:0030246,GO:0030247,GO:0043167,GO:0043169,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0046872,GO:0071704,GO:1901575,GO:2001070 3.2.1.1,3.2.1.133,3.2.1.135,3.2.1.54 0.00000000001775 69.0
YYD1_k127_3233419_0 Alpha-amylase domain K21575 - 3.2.1.135 1.543e-233 736.0
YYD1_k127_3239840_0 RagB SusD domain protein K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 569.0
YYD1_k127_3239840_1 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002182 255.0
YYD1_k127_3239840_2 cephalosporin hydroxylase - - - 0.00000000000000000000000000000000000000000000000000000000000008231 221.0
YYD1_k127_3239840_3 DinB superfamily - - - 0.000000000000000000000000000000000000000000000000002985 186.0
YYD1_k127_3239840_4 permease - - - 0.0000000000000000000000000006929 116.0
YYD1_k127_3239840_5 Outer membrane receptor - - - 0.000000000000000000002179 95.0
YYD1_k127_3241431_0 COGs COG0596 hydrolase or acyltransferase (alpha beta hydrolase superfamily) K01259 - 3.4.11.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001134 449.0
YYD1_k127_3241431_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.000000000000000000000000000000000000000000008659 171.0
YYD1_k127_3256566_0 catalase activity - - - 4.69e-211 672.0
YYD1_k127_3256566_1 catalase activity - - - 0.0000000000000000000000000000000007045 135.0
YYD1_k127_3256735_0 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007335 433.0
YYD1_k127_3256735_1 Beta-ketoacyl synthase, N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001578 344.0
YYD1_k127_3256735_2 Polysaccharide deacetylase K22278 - 3.5.1.104 0.00000000000000000000000000000000000000000000000000000004083 206.0
YYD1_k127_3256735_3 Outer membrane lipoprotein carrier protein LolA K03634 - - 0.000000000000000000000000000000000000000000000000000002758 198.0
YYD1_k127_32594_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0 1012.0
YYD1_k127_3259404_0 domain, Protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007651 393.0
YYD1_k127_325971_0 COG2373 Large extracellular alpha-helical protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002173 573.0
YYD1_k127_325971_1 fad dependent oxidoreductase - - - 0.000000000000000000000000001651 117.0
YYD1_k127_3261112_0 Oxidoreductase domain protein - - - 2.79e-203 638.0
YYD1_k127_3261112_1 LacY proton/sugar symporter K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001382 548.0
YYD1_k127_3261112_2 Belongs to the thiolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 503.0
YYD1_k127_3261112_3 Belongs to the peptidase M24B family K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123 418.0
YYD1_k127_3261112_4 A domain in the BMP inhibitor chordin and in microbial proteins. - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 441.0
YYD1_k127_3261112_5 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007255 260.0
YYD1_k127_3261112_6 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000003526 224.0
YYD1_k127_3261112_7 Domain of unknown function (DUF4397) - - - 0.0000000000000000000000000000000000000000000001034 194.0
YYD1_k127_3261112_8 - - - - 0.00000000000000000000000001875 115.0
YYD1_k127_3261112_9 DinB superfamily - - - 0.0000000000002387 79.0
YYD1_k127_3277118_0 PFAM Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000007459 224.0
YYD1_k127_3279981_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 361.0
YYD1_k127_3279981_1 Fungalysin metallopeptidase (M36) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007575 355.0
YYD1_k127_3281021_0 Na dependent nucleoside transporter K03317 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007544 531.0
YYD1_k127_3281021_1 uridine kinase K00876 - 2.7.1.48 0.000000000000000000000000000000000000000000000000000000000000000000009748 239.0
YYD1_k127_3281021_2 NADP oxidoreductase coenzyme F420-dependent - - - 0.00000000000000000000000000000000000000000000000000001042 198.0
YYD1_k127_3281021_3 - - - - 0.000000000000000000005145 104.0
YYD1_k127_3285121_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro) K01881 GO:0003674,GO:0003824,GO:0004812,GO:0004827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006433,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.15 2.256e-243 758.0
YYD1_k127_3285121_1 Peptidase S46 - GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 1.427e-197 636.0
YYD1_k127_3285121_11 IMG reference gene - - - 0.00000000000000000001109 108.0
YYD1_k127_3285121_12 energy transducer activity K01181,K03832 - 3.2.1.8 0.00000000001952 76.0
YYD1_k127_3285121_13 ketosteroid isomerase - - - 0.0000000005803 68.0
YYD1_k127_3285121_14 Cytochrome c biogenesis protein transmembrane region K06196 - - 0.000000001887 71.0
YYD1_k127_3285121_15 Redoxin - - - 0.000009077 56.0
YYD1_k127_3285121_16 Catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c - - - 0.0004885 53.0
YYD1_k127_3285121_17 Thioredoxin-like - - - 0.0008497 52.0
YYD1_k127_3285121_2 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016746,GO:0016747,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0033819,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051604,GO:0071704,GO:1901564 2.3.1.181 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001739 284.0
YYD1_k127_3285121_3 membrane protein involved in aromatic hydrocarbon degradation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008835 293.0
YYD1_k127_3285121_4 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001183 269.0
YYD1_k127_3285121_5 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.000000000000000000000000000000000000000000000000000000000000000000000000003817 259.0
YYD1_k127_3285121_6 PFAM thioesterase superfamily - - - 0.000000000000000000000000000000000000000000000000000000001433 205.0
YYD1_k127_3285121_7 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 - 1.8.4.12 0.000000000000000000000000000000000000000000000000000000001444 205.0
YYD1_k127_3285121_8 Protein of unknown function (DUF2911) - - - 0.00000000000000000000000000000000000000000000000000000001288 208.0
YYD1_k127_3285121_9 Domain of unknown function (DUF3127) - - - 0.00000000000000000000000000000000000009164 147.0
YYD1_k127_3287890_0 acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 9.903e-243 754.0
YYD1_k127_3287890_1 ABC transporter K06147,K11085 - - 9.706e-198 633.0
YYD1_k127_3287890_2 COG1228 Imidazolonepropionase and related K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001251 494.0
YYD1_k127_3287890_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 GO:0003674,GO:0003824,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033818,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0071704 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009137 451.0
YYD1_k127_3287890_4 SPTR CHU large protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001581 476.0
YYD1_k127_3287890_5 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008266 269.0
YYD1_k127_3287890_6 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001444 254.0
YYD1_k127_3287890_7 Belongs to the glycosyl hydrolase 43 family - - - 0.000000000000000000000000000000000000000000000000000000000000000008948 240.0
YYD1_k127_3287890_8 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA K02160 - - 0.000000000000000000000000000000000000000000000003682 177.0
YYD1_k127_3290185_0 DNA photolyase K01669 - 4.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004172 537.0
YYD1_k127_3290185_1 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.0000000000000000000000000000000000000000000000000000000003143 205.0
YYD1_k127_3290185_2 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000000000000000000000002891 173.0
YYD1_k127_3302185_0 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006558 348.0
YYD1_k127_3302185_1 Acyl-protein synthetase, LuxE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002887 287.0
YYD1_k127_3302185_2 PFAM Cytochrome c-type biogenesis protein CcmB K02194 - - 0.00000000000000000000000000000000000007568 151.0
YYD1_k127_3302185_4 Belongs to the ArsC family K00537 - 1.20.4.1 0.00000000000003502 72.0
YYD1_k127_334222_0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008248 474.0
YYD1_k127_334222_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 447.0
YYD1_k127_334222_2 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000001399 214.0
YYD1_k127_334222_3 Domain of unknown function (DUF1905) - - - 0.00000000000000000000000000000000000000000000000000000003715 200.0
YYD1_k127_334222_4 RibD C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000004108 198.0
YYD1_k127_334222_5 YCII-related domain - - - 0.000000000000000000000000000000000000000000000000000006396 191.0
YYD1_k127_334222_6 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000007796 174.0
YYD1_k127_334222_7 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000002449 132.0
YYD1_k127_334222_8 Hep Hag repeat protein - - - 0.00000000000002892 77.0
YYD1_k127_3351946_0 cellulase activity - - - 0.00000000000000000000000000000000000008441 162.0
YYD1_k127_3351946_1 cellulase activity - - - 0.0000000000000000000000000000138 137.0
YYD1_k127_3351946_2 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000001624 67.0
YYD1_k127_3352427_0 RQC K03654 - 3.6.4.12 4.294e-203 654.0
YYD1_k127_3352427_1 COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit K02621 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 341.0
YYD1_k127_3352427_2 Protein of unknown function, DUF255 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005978 257.0
YYD1_k127_3352427_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000006119 211.0
YYD1_k127_3363887_0 PAP2 superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003257 270.0
YYD1_k127_3363887_1 regulator of cell autolysis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002297 255.0
YYD1_k127_3363887_2 SPTR CHU large protein - - - 0.000000000000001671 80.0
YYD1_k127_3380876_0 Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position K00700 - 2.4.1.18 3.465e-252 797.0
YYD1_k127_3380876_1 Exodeoxyribonuclease V, gamma subunit K03657 - 3.6.4.12 3.7e-214 701.0
YYD1_k127_3380876_2 GIY-YIG catalytic domain K07461 - - 0.000000000000000000000000000000000000004447 148.0
YYD1_k127_3386381_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000004479 249.0
YYD1_k127_3387544_0 membrane - - - 0.000000000000000000000000000000000000003459 151.0
YYD1_k127_3387544_1 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.000000000000000000000000000000000004171 143.0
YYD1_k127_3387544_2 PFAM FecR protein - - - 0.00000000000000000000003625 109.0
YYD1_k127_339781_0 C-terminal domain of CHU protein family - - - 5.564e-219 750.0
YYD1_k127_339781_1 SPTR CHU large protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005319 421.0
YYD1_k127_339781_2 domain, Protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002969 360.0
YYD1_k127_3400058_0 Protein of unknown function (DUF1800) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006965 263.0
YYD1_k127_3400058_1 Protein conserved in bacteria K09950 - - 0.0000000000000000000000000000000000000000000000000000001259 198.0
YYD1_k127_3400058_2 Acetyltransferase (GNAT) domain - - - 0.000000000000000000005976 104.0
YYD1_k127_3402303_0 of the AAA class - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006467 606.0
YYD1_k127_3402303_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001338 413.0
YYD1_k127_3402303_2 Chemotaxis protein CheY K02477 - - 0.0000000000000000000000000000000000000000000000000000000001769 211.0
YYD1_k127_3402303_3 - - - - 0.00000000000000000000000000000000000000000000000000000006764 201.0
YYD1_k127_3402303_4 Acetyltransferase (GNAT) domain K22441 - 2.3.1.57 0.00000000000000000000000000000000000000000000006937 173.0
YYD1_k127_3402303_6 Acetyltransferase (GNAT) domain K03828 - - 0.00000000000000000000000000000001244 132.0
YYD1_k127_3403328_0 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005471 486.0
YYD1_k127_3403328_1 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.00000000000000000000000000000000000000000000000000000000000000000003151 238.0
YYD1_k127_3412424_0 Transcriptional regulatory protein, C terminal - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001802 300.0
YYD1_k127_3412424_1 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000007073 257.0
YYD1_k127_3412424_2 DNA alkylation repair - - - 0.0000000000000000000000000000000001456 137.0
YYD1_k127_3416455_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002637 302.0
YYD1_k127_3417611_0 COGs COG0659 Sulfate permease and related transporter (MFS superfamily) K03321 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006247 334.0
YYD1_k127_3417611_1 Protein of unknown function (DUF2490) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006553 302.0
YYD1_k127_3417611_2 transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003643 279.0
YYD1_k127_3417611_3 - - - - 0.000000000000000000000000003313 118.0
YYD1_k127_342177_0 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602 426.0
YYD1_k127_342177_1 oxidoreductase activity - - - 0.000000000000000000000000000000000000000000000000000000003288 224.0
YYD1_k127_342177_2 Protein of unknown function (DUF1684) K09164 - - 0.000000000000000000000000000000000006008 138.0
YYD1_k127_3428684_0 DJ-1/PfpI family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009041 551.0
YYD1_k127_3428684_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 355.0
YYD1_k127_3428684_2 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000008214 243.0
YYD1_k127_3428684_3 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000000000000009625 217.0
YYD1_k127_3428684_4 PFAM Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000001987 203.0
YYD1_k127_3428684_5 Cupin domain - - - 0.00000000000000000000000000009344 125.0
YYD1_k127_3428684_6 - - - - 0.00000000000000000001221 94.0
YYD1_k127_3429639_0 ASPIC and UnbV - - - 4.59e-207 659.0
YYD1_k127_3436246_0 PDZ domain (Also known as DHR or GLGF) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 301.0
YYD1_k127_3436246_1 COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K03088 - - 0.00006674 53.0
YYD1_k127_344811_0 acetyl-CoA hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 589.0
YYD1_k127_344811_1 MerR family transcriptional regulator K22491 - - 0.000000000000000000001608 96.0
YYD1_k127_344900_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 445.0
YYD1_k127_344900_1 beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 348.0
YYD1_k127_344900_2 Tetratricopeptide - - - 0.0000000000000000000000000000000000000000000000000000000001843 211.0
YYD1_k127_344900_3 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 GO:0000906,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.78 0.0000000000000000000000000000000000000000000001195 173.0
YYD1_k127_344900_4 - - - - 0.000000000000000000000000000000007887 141.0
YYD1_k127_3453754_0 tRNA nucleotidyltransferase K00970,K00974 - 2.7.7.19,2.7.7.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007016 603.0
YYD1_k127_3453754_1 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002443 533.0
YYD1_k127_3453754_2 export protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009785 505.0
YYD1_k127_3453754_3 TonB-dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008998 441.0
YYD1_k127_3456126_0 Conserved Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003097 497.0
YYD1_k127_3456126_1 Sulfo-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001661 324.0
YYD1_k127_3456126_2 oxidoreductase activity, acting on CH-OH group of donors - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007752 256.0
YYD1_k127_3456126_3 AI-2E family transporter - - - 0.00000000000000000006474 93.0
YYD1_k127_3479765_0 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 514.0
YYD1_k127_3479765_1 Pyridoxal-phosphate dependent enzyme K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008335 473.0
YYD1_k127_3479765_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006229 391.0
YYD1_k127_3479765_3 DNA polymerase III K02342 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034 376.0
YYD1_k127_3479765_4 Mandelate racemase muconate lactonizing enzyme K02549,K19802 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016854,GO:0034641,GO:0043167,GO:0043169,GO:0043603,GO:0044237,GO:0046872,GO:0071704,GO:1901564 4.2.1.113,5.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006959 322.0
YYD1_k127_3479765_5 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) K07259 - 3.4.16.4 0.00000000000000000007367 91.0
YYD1_k127_3486633_0 PFAM TonB-dependent Receptor Plug - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005107 616.0
YYD1_k127_3486633_1 cytochrome C peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003465 335.0
YYD1_k127_3486633_2 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000002608 261.0
YYD1_k127_3486633_4 COG0526, thiol-disulfide isomerase and thioredoxins - - - 0.000000000000002061 91.0
YYD1_k127_3508008_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.27e-260 812.0
YYD1_k127_3508008_1 Na+/Pi-cotransporter K03324 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 316.0
YYD1_k127_3508008_2 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K06169 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006857 244.0
YYD1_k127_3508008_3 Collagen triple helix repeat (20 copies) - - - 0.000000000000000000000000000000000000000000033 177.0
YYD1_k127_3508008_4 PFAM aldo keto reductase - - - 0.00000001026 57.0
YYD1_k127_3508008_5 PFAM Glycosyl transferase family 2 K10012 - 2.4.2.53 0.0000001519 55.0
YYD1_k127_3528371_0 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009112 291.0
YYD1_k127_3528371_1 AsmA family - - - 0.0000000000000000000000000000000000000000000000002386 200.0
YYD1_k127_3528371_2 Belongs to the peptidase S8 family K11016 - - 0.000000000000000000000000000000000000000000001069 191.0
YYD1_k127_3533532_0 With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA K02609 - 1.14.13.149 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001036 519.0
YYD1_k127_3533532_1 Oxidoreductase FAD-binding domain K02613 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 347.0
YYD1_k127_3533532_2 D-alanyl-D-alanine carboxypeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003445 281.0
YYD1_k127_3533532_3 Transcriptional regulator, TetR family - - - 0.000000000000000000000000000000000000000005289 161.0
YYD1_k127_3533532_4 Phenylacetic acid degradation B K02610 - - 0.000000000000000000000000000000000000001358 151.0
YYD1_k127_356449_0 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K16363 - 3.5.1.108,4.2.1.59 9.327e-205 646.0
YYD1_k127_356449_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 - 2.3.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 341.0
YYD1_k127_356449_2 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00677 - 2.3.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007827 289.0
YYD1_k127_356449_3 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001437 295.0
YYD1_k127_356449_4 May be involved in recombinational repair of damaged DNA K03631 - - 0.000000000000000000000000000000000000000000000000001049 190.0
YYD1_k127_358441_0 ADP binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 542.0
YYD1_k127_358441_1 Signal transduction response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 350.0
YYD1_k127_358441_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002462 302.0
YYD1_k127_358441_3 Sulfotransferase family - - - 0.0000000000000000000000000000000000000000000003155 178.0
YYD1_k127_358895_0 TonB-dependent receptor plug domain K02014 - - 1.59e-299 947.0
YYD1_k127_358895_1 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000004931 109.0
YYD1_k127_358895_2 alpha beta - - - 0.000000000000000000004 97.0
YYD1_k127_3596574_0 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003983 284.0
YYD1_k127_3596574_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000002976 138.0
YYD1_k127_3596574_2 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000009775 106.0
YYD1_k127_3596574_3 Domain of unknown function (DUF4440) - - - 0.00000000000000003878 88.0
YYD1_k127_3596574_4 - - - - 0.000000000000001032 83.0
YYD1_k127_3599428_0 COG0188 Type IIA topoisomerase (DNA gyrase topo II topoisomerase IV) A subunit K02621 - - 2.202e-313 978.0
YYD1_k127_3599428_1 - - - - 0.00000001312 61.0
YYD1_k127_3599428_2 PFAM Anti-sigma-K factor RskA - - - 0.0000002376 61.0
YYD1_k127_3612519_0 translation initiation factor activity K02453 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006766 403.0
YYD1_k127_3612519_1 - - - - 0.0000000000000000000000000000000000000000000000000000000001346 211.0
YYD1_k127_3612519_2 PFAM Formylglycine-generating sulfatase enzyme - - - 0.000000009025 66.0
YYD1_k127_3612519_3 Endonuclease Exonuclease Phosphatase - - - 0.0002019 53.0
YYD1_k127_3612519_4 Belongs to the glycosyl hydrolase 13 family - - - 0.0004061 54.0
YYD1_k127_3651466_0 SprB repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003334 274.0
YYD1_k127_3651466_1 translation initiation factor activity - - - 0.00000000000000000000000000000000000000000000000000000001094 209.0
YYD1_k127_3651466_2 Pkd domain containing protein - - - 0.000000000005209 78.0
YYD1_k127_3657198_0 - - - - 0.000000000000000000000000000000000000000000000000000001749 198.0
YYD1_k127_3657198_1 Metallo-peptidase family M12B Reprolysin-like - - - 0.000000000000000000000000000001906 137.0
YYD1_k127_3657198_3 Endonuclease/Exonuclease/phosphatase family - - - 0.00000000001602 77.0
YYD1_k127_3664021_0 Outer membrane receptor for Fe3 -dicitrate K16091 - - 0.0000000000000000000000000000000000000000000000000000000000000004996 226.0
YYD1_k127_3664021_1 short-chain dehydrogenase K07124 - - 0.000000000000000000000000000000000000000000000000000000000000009149 226.0
YYD1_k127_3664021_2 Ergosterol biosynthesis ERG4/ERG24 family K00213,K00223 - 1.3.1.21,1.3.1.71 0.0000000000000000000000000000000000000000001728 159.0
YYD1_k127_3664787_0 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003522 338.0
YYD1_k127_3664787_1 metallopeptidase activity K01337 - 3.4.21.50 0.000000001017 70.0
YYD1_k127_3667576_0 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K01431,K12251 - 3.5.1.53,3.5.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003077 460.0
YYD1_k127_3667576_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002502 347.0
YYD1_k127_3672930_0 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004547 612.0
YYD1_k127_3672930_1 Electron transfer DM13 - - - 0.000000000000000000000000000000000000001378 151.0
YYD1_k127_3672930_2 - - - - 0.00000000000000000000000000000000000005414 148.0
YYD1_k127_3677813_0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002083 252.0
YYD1_k127_3677813_1 Transposase - - - 0.000000000000000000000000000000000000000000000000000005381 201.0
YYD1_k127_3684076_0 Peptidase, S8 S53 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003272 512.0
YYD1_k127_3684076_1 Cytochrome c - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 459.0
YYD1_k127_3684076_2 Glyco_18 K01183 - 3.2.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009687 318.0
YYD1_k127_3684076_3 SprB repeat - - - 0.000001682 59.0
YYD1_k127_368722_0 ABC transporter K15738 - - 6.437e-291 900.0
YYD1_k127_368722_1 PFAM Sulfotransferase domain - - - 0.00000000000000000000000000000000001289 147.0
YYD1_k127_368722_2 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000000000000000000000277 106.0
YYD1_k127_368722_3 - - - - 0.0000000000003766 71.0
YYD1_k127_3694372_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003996 534.0
YYD1_k127_3694372_1 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000002488 101.0
YYD1_k127_3694372_2 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000003467 105.0
YYD1_k127_3694474_0 Heavy metal translocating P-type atpase K01533,K17686 - 3.6.3.4,3.6.3.54 0.0 1155.0
YYD1_k127_3694474_1 PFAM Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 517.0
YYD1_k127_3694474_2 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003759 361.0
YYD1_k127_3694474_3 CorA-like Mg2+ transporter protein K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002283 323.0
YYD1_k127_3694474_4 PFAM Bacterial regulatory helix-turn-helix proteins, AraC family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004416 273.0
YYD1_k127_3694474_5 - - - - 0.00000000000000000000000000000000000000000003758 164.0
YYD1_k127_3694474_6 Heavy-metal-associated domain - - - 0.000000000000000000000000000000001165 135.0
YYD1_k127_3694474_7 Protein of unknown function (DUF3347) - - - 0.0000000000000000000000000006753 120.0
YYD1_k127_3696807_0 PUA domain containing protein K06969 - 2.1.1.191 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 401.0
YYD1_k127_3696807_1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001046 334.0
YYD1_k127_3696807_2 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001814 316.0
YYD1_k127_369737_0 PFAM glycoside hydrolase family 3 - - - 4.105e-290 920.0
YYD1_k127_369737_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 531.0
YYD1_k127_369737_2 ABC-type transport system involved in lipoprotein release permease component K09808,K09815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007694 362.0
YYD1_k127_369737_3 D-arabinono-1,4-lactone oxidase - - - 0.0000001623 53.0
YYD1_k127_371224_0 ABC transporter K18889 - - 1.926e-223 708.0
YYD1_k127_371224_1 regulator of chromosome condensation, RCC1 - - - 0.000000000000000000000000000000000000000000002114 177.0
YYD1_k127_371224_2 SMART PUR-alpha beta gamma DNA RNA-binding - - - 0.00000000000000000000000000000000000000004069 154.0
YYD1_k127_371224_3 glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000001503 94.0
YYD1_k127_371224_4 rRNA binding - - - 0.000000000000000005948 93.0
YYD1_k127_3740598_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 1.045e-215 684.0
YYD1_k127_3740598_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 2.313e-212 666.0
YYD1_k127_3740598_2 Fe-S type, tartrate fumarate subfamily, alpha K01677 - 4.2.1.2 0.0000000000000000000003664 100.0
YYD1_k127_3740598_3 PFAM fumarylacetoacetate (FAA) hydrolase - - - 0.00000000000000000001407 92.0
YYD1_k127_3757914_0 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.000000000000000000000000000000000000000000000000000002568 201.0
YYD1_k127_3757914_1 Polysaccharide biosynthesis C-terminal domain - - - 0.000000000000000000000000000000000000000001706 172.0
YYD1_k127_3757914_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000006591 127.0
YYD1_k127_3757914_3 M6 family metalloprotease domain protein - - - 0.000000000000000000000004808 116.0
YYD1_k127_3761011_0 agmatine deiminase activity K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001486 435.0
YYD1_k127_3761011_1 Fibronectin type 3 domain - - - 0.0000002587 63.0
YYD1_k127_3761011_2 domain, Protein K08961 - 4.2.2.20,4.2.2.21 0.00008913 55.0
YYD1_k127_3763497_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 GO:0003674,GO:0003824,GO:0004360,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006002,GO:0006040,GO:0006047,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009987,GO:0016740,GO:0016769,GO:0019538,GO:0019637,GO:0034641,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055086,GO:0070085,GO:0070548,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.6.1.16 3.62e-202 635.0
YYD1_k127_3763497_1 Domain of unknown function (DUF4290) - - - 0.0000000000000000000000000000000000000000000007749 173.0
YYD1_k127_3763587_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 6.408e-270 845.0
YYD1_k127_3763587_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000004522 179.0
YYD1_k127_3767660_0 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001842 401.0
YYD1_k127_3767660_1 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000000000000000000000001239 179.0
YYD1_k127_3767660_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.000000000000000000000000000000000002738 138.0
YYD1_k127_3767660_3 Belongs to the LOG family K06966 - 3.2.2.10 0.00000000000000000000002723 100.0
YYD1_k127_3767660_4 Putative porin - - - 0.00000000001504 78.0
YYD1_k127_3771793_0 PFAM SPFH domain Band 7 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006777 377.0
YYD1_k127_3771793_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000007933 220.0
YYD1_k127_3771793_2 amp-binding enzyme - - - 0.0000000000000000000000000000000000305 138.0
YYD1_k127_3779977_0 COG0308 Aminopeptidase N - - - 0.0 1080.0
YYD1_k127_3779977_1 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009086 537.0
YYD1_k127_3779977_10 Universal stress protein family - - - 0.00000000000000000000000000000000000000003356 162.0
YYD1_k127_3779977_11 - K13652 - - 0.000000000003181 70.0
YYD1_k127_3779977_2 COG0659 Sulfate permease and related transporters (MFS superfamily) K01673,K03321 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 433.0
YYD1_k127_3779977_3 FtsX-like permease family K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002314 424.0
YYD1_k127_3779977_4 PFAM ROK family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001938 383.0
YYD1_k127_3779977_5 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000291 311.0
YYD1_k127_3779977_6 AAA domain, putative AbiEii toxin, Type IV TA system K02003 - - 0.000000000000000000000000000000000000000000000000000000000008411 213.0
YYD1_k127_3779977_7 Dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000369 214.0
YYD1_k127_3779977_8 D-ala-D-ala dipeptidase K08641 - 3.4.13.22 0.00000000000000000000000000000000000000000000000000000004842 206.0
YYD1_k127_3779977_9 Metallo-beta-lactamase superfamily - - - 0.0000000000000000000000000000000000000000000008453 168.0
YYD1_k127_3796916_0 RNA polymerase, sigma-54 factor K03092 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004995 530.0
YYD1_k127_3796916_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002617 428.0
YYD1_k127_3796916_2 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007797 382.0
YYD1_k127_3796916_3 DNA protecting protein DprA K04096 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 371.0
YYD1_k127_3796916_4 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000059 374.0
YYD1_k127_3796916_5 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000003572 274.0
YYD1_k127_3806215_0 Sulfatase - - - 0.0 1213.0
YYD1_k127_3806215_1 Mechanosensitive ion channel - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000198 364.0
YYD1_k127_380657_0 Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 K14441 - 2.8.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003485 520.0
YYD1_k127_380657_1 SpoU rRNA Methylase family - - - 0.0000000000000000000000000000000000000000000000000004435 191.0
YYD1_k127_3810389_0 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003316 441.0
YYD1_k127_3810389_1 TIGRFAM gliding motility-associated C-terminal domain - - - 0.00000000000000000000000000000000391 150.0
YYD1_k127_3810389_2 SprB repeat - - - 0.000000000000000000001606 112.0
YYD1_k127_3814548_0 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008882 402.0
YYD1_k127_3814548_1 Outer membrane efflux protein - - - 0.000000000000000000000000000000003206 130.0
YYD1_k127_3814548_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K07798,K15727 - - 0.000000000000000000000001436 106.0
YYD1_k127_3843226_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.019e-222 698.0
YYD1_k127_3843226_1 ATPase (AAA - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008828 501.0
YYD1_k127_3843226_2 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009724 482.0
YYD1_k127_3843226_3 Lipopolysaccharide-assembly - - - 0.0000000000000000000000000000000000000006592 153.0
YYD1_k127_3845880_0 ASPIC and UnbV - - - 1.527e-249 792.0
YYD1_k127_3845880_1 Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004893 430.0
YYD1_k127_3845880_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005535 343.0
YYD1_k127_3845880_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000000000000000000001163 166.0
YYD1_k127_3845880_4 lipopolysaccharide biosynthesis protein - - - 0.000000000000000000000000000003601 133.0
YYD1_k127_3849499_0 Belongs to the agmatine deiminase family K10536 - 3.5.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 544.0
YYD1_k127_3849499_1 PFAM Peptidase M56, BlaR1 - - - 0.0000000000000000000000000000000000000000000000000000000000000001602 245.0
YYD1_k127_3849499_2 Putative member of DMT superfamily (DUF486) K09922 - - 0.00000000000000000000000000000000000000000000000002182 184.0
YYD1_k127_3849499_3 PFAM Nitrilase cyanide hydratase and apolipoprotein N-acyltransferase K12251 - 3.5.1.53 0.00000000000000000000000000000000482 128.0
YYD1_k127_3849499_4 Trypsin - - - 0.000000002305 69.0
YYD1_k127_3849499_5 Metallo-peptidase family M12B Reprolysin-like - - - 0.00000119 60.0
YYD1_k127_3849499_6 Transcriptional repressor, CopY family - - - 0.000003356 49.0
YYD1_k127_3868767_0 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000002384 266.0
YYD1_k127_3868767_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161 - 1.2.4.1 0.00000000000000000000000000000000000000000000003164 173.0
YYD1_k127_3868767_2 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.00000000000000000000000000000202 124.0
YYD1_k127_3868767_3 Protein of unknown function (DUF721) - - - 0.0000000000000001726 82.0
YYD1_k127_3873734_0 Periplasmic component of the Tol biopolymer transport system - - - 2.956e-280 895.0
YYD1_k127_3873734_1 alanine dehydrogenase K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000827 464.0
YYD1_k127_3873734_2 - - - - 0.000000000000000000000000000000000000000000000000000001315 200.0
YYD1_k127_3873734_3 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.000000000000000000000000000001512 126.0
YYD1_k127_3873734_4 Diacylglycerol kinase catalytic domain (presumed) - - - 0.0000000000000000000007349 105.0
YYD1_k127_3874537_0 PFAM Prenyltransferase squalene oxidase K01077,K11751 - 3.1.3.1,3.1.3.5,3.6.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007395 470.0
YYD1_k127_3874537_1 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004712 447.0
YYD1_k127_3874537_2 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005985 395.0
YYD1_k127_3874537_3 RibD C-terminal domain K00287 - 1.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003192 310.0
YYD1_k127_3874537_4 Protein of unknown function (DUF2975) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001638 250.0
YYD1_k127_3874537_5 selenocysteine lyase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000005814 255.0
YYD1_k127_3874537_6 Cro/C1-type HTH DNA-binding domain K07727 - - 0.00000000000000000000000000000000001233 136.0
YYD1_k127_3874537_7 - - - - 0.000000000000000000000000000000007905 129.0
YYD1_k127_3874537_8 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000006375 127.0
YYD1_k127_3878047_0 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007631 284.0
YYD1_k127_3878047_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004528 266.0
YYD1_k127_3878047_2 Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA K03439 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234 2.1.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000003055 267.0
YYD1_k127_3894700_0 AcrB/AcrD/AcrF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003354 467.0
YYD1_k127_3894700_1 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07239 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001125 347.0
YYD1_k127_3894700_2 mercury ion transmembrane transporter activity - - - 0.0000000000000000000000000006391 116.0
YYD1_k127_3894700_3 PFAM CoA-binding domain protein K01905,K22224 - 6.2.1.13 0.000000001412 61.0
YYD1_k127_3894700_4 - - - - 0.000002281 53.0
YYD1_k127_3915431_0 homoserine dehydrogenase K12524 - 1.1.1.3,2.7.2.4 4.966e-234 750.0
YYD1_k127_3915431_1 Phosphoribosylformylglycinamidine cyclo-ligase K01933 - 6.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 388.0
YYD1_k127_3915431_2 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000148 347.0
YYD1_k127_3915431_3 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000003724 91.0
YYD1_k127_3934713_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00819 - 2.6.1.13 0.0000000000000000000000000000000000000000000000000000000000000002706 226.0
YYD1_k127_3934713_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 GO:0003674,GO:0003824,GO:0004140,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.24 0.00000000000000000000000000000000000000000000000483 179.0
YYD1_k127_3934713_2 PFAM Uncharacterised protein family UPF0029, Impact, N-terminal - - - 0.0000000000000000000000000000000000000000000004738 176.0
YYD1_k127_3934713_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000187 155.0
YYD1_k127_3934713_4 Sulfatase K01130 - 3.1.6.1 0.000000000000000000000000000000000005092 139.0
YYD1_k127_3942767_0 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002104 465.0
YYD1_k127_3942767_1 Fumarylacetoacetase K01555 - 3.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002956 425.0
YYD1_k127_3944634_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 489.0
YYD1_k127_3944634_1 DoxX family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001658 438.0
YYD1_k127_3944634_2 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 293.0
YYD1_k127_3944634_3 Domain of Unknown Function (DUF1599) - - - 0.0000000000000000000000000000000000000000000000000007893 186.0
YYD1_k127_3957851_0 FAD linked oxidases, C-terminal domain - - - 8.891e-251 799.0
YYD1_k127_3957851_1 COGs COG1680 Beta-lactamase class C and other penicillin binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007791 535.0
YYD1_k127_3957851_2 AP endonuclease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000134 514.0
YYD1_k127_3957851_3 PFAM 6-O-methylguanine DNA methyltransferase, DNA binding domain K00567,K07443 - 2.1.1.63 0.00000000001141 65.0
YYD1_k127_3977160_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000686 552.0
YYD1_k127_3977160_1 cellulase activity K01224,K20276 - 3.2.1.89 0.0000000118 59.0
YYD1_k127_3982950_0 D-arabinono-1,4-lactone oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 493.0
YYD1_k127_3982950_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007674 361.0
YYD1_k127_3982950_2 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000002098 176.0
YYD1_k127_398372_0 - - - - 1.419e-204 644.0
YYD1_k127_398372_1 oxidoreductase activity - - - 0.00000000000000000000000001614 114.0
YYD1_k127_398372_2 PFAM Glycosyl transferase, group 1 - GO:0003674,GO:0003824,GO:0016740,GO:0016757 - 0.0000000000000000000000002157 109.0
YYD1_k127_398372_3 transferase activity, transferring glycosyl groups K00754 - - 0.000000004375 58.0
YYD1_k127_400025_0 PFAM Zinc carboxypeptidase - - - 1.214e-230 735.0
YYD1_k127_400025_1 alanine symporter K03310 - - 2.164e-204 651.0
YYD1_k127_400025_2 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003283 374.0
YYD1_k127_4001516_0 alpha-2-macroglobulin domain protein K06894 - - 9.811e-261 840.0
YYD1_k127_4003885_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 327.0
YYD1_k127_4003885_1 COG0308 Aminopeptidase N - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002904 282.0
YYD1_k127_4003885_2 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000007594 202.0
YYD1_k127_4003885_3 YCII-related domain - - - 0.0000000000000000000000000000000000000000000000000000000271 201.0
YYD1_k127_4036463_0 tail collar domain protein - - - 0.00000000000000000000000000000000000000000000000000000000008947 220.0
YYD1_k127_4036463_1 tail collar domain protein - - - 0.0000000000000000000000000000000000000000001041 168.0
YYD1_k127_4036463_2 Metallopeptidase family M24 K01262,K01271 GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009056,GO:0009987,GO:0016787,GO:0016805,GO:0019538,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0070011,GO:0070573,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575 3.4.11.9,3.4.13.9 0.00000000000000000000000000000000004125 138.0
YYD1_k127_4036463_3 domain, Protein - - - 0.0000000000409 65.0
YYD1_k127_4036463_4 - - - - 0.0000003333 59.0
YYD1_k127_4042228_0 Peptidase family S41 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004776 612.0
YYD1_k127_4042228_1 Transposase IS200 like - - - 0.00000000000000000000000000000000000001169 150.0
YYD1_k127_404880_0 acyl-CoA dehydrogenase K00252 - 1.3.8.6 6.48e-229 711.0
YYD1_k127_404880_1 PFAM Aldo keto reductase family K19265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002392 514.0
YYD1_k127_404880_2 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005993 271.0
YYD1_k127_404880_3 chlorophyll binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002739 262.0
YYD1_k127_404880_4 GSCFA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000001048 246.0
YYD1_k127_404880_5 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.000000000000000000000002068 109.0
YYD1_k127_404880_6 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.00003331 46.0
YYD1_k127_4054891_0 B-1 B cell differentiation - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004398 434.0
YYD1_k127_4054891_1 Pfam Adenylate and Guanylate cyclase catalytic domain - - - 0.0000000000000000000000000000000000000000000000000000000000007791 235.0
YYD1_k127_4054891_2 - - - - 0.00000000004718 70.0
YYD1_k127_4054891_3 Lipase (class 2) - - - 0.0000001325 66.0
YYD1_k127_4058530_0 Serine protease, subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001687 548.0
YYD1_k127_4058530_1 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 0.000000000000000000000000000000000000000000000000000000000003784 224.0
YYD1_k127_4058530_2 Tetratricopeptide repeat - - - 0.00008038 53.0
YYD1_k127_4060305_0 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 5.769e-254 792.0
YYD1_k127_4060305_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002124 501.0
YYD1_k127_4069608_0 Sterol desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001763 426.0
YYD1_k127_4069608_1 ADP binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000006522 247.0
YYD1_k127_4069608_2 - - - - 0.0000000000000000000000000000000002479 138.0
YYD1_k127_4069608_3 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.00000000000000000000000000000001957 130.0
YYD1_k127_4069608_4 GCN5-related N-acetyl-transferase K06975 - - 0.00000000000000000000000001446 111.0
YYD1_k127_4069608_5 transcriptional regulator K07729 - - 0.00000000000000000000006356 100.0
YYD1_k127_4074479_0 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 298.0
YYD1_k127_4074479_1 Phosphate acyltransferases - - - 0.000000000000000000000000000000000008085 152.0
YYD1_k127_4075655_0 COG2818 3-methyladenine DNA glycosylase K01246 - 3.2.2.20 0.00000000000000000000000000000000000000000000000000000000000000000004876 236.0
YYD1_k127_4075655_1 Protein of unknown function (DUF2490) - - - 0.000000000000000000000000000000000000000000000000000000000000001022 227.0
YYD1_k127_4075655_2 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 - 6.1.1.10 0.000000000002084 67.0
YYD1_k127_4075655_3 Arylsulfotransferase (ASST) - - - 0.00005921 54.0
YYD1_k127_4081448_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 497.0
YYD1_k127_4081448_1 phosphoesterase RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001035 353.0
YYD1_k127_4081448_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.00000000000000000000000000000000000000000000000000000000000000003238 226.0
YYD1_k127_4081448_3 PFAM FKBP-type peptidyl-prolyl cis-trans isomerase K01802,K03767,K03772 - 5.2.1.8 0.000000000000000000000000000000000000001345 158.0
YYD1_k127_4085589_0 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003778 552.0
YYD1_k127_4085589_1 Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003712 500.0
YYD1_k127_4085589_10 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000009077 135.0
YYD1_k127_4085589_11 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000000000006991 119.0
YYD1_k127_4085589_12 Acetyl propionyl-CoA carboxylase alpha subunit K01960 - 6.4.1.1 0.0000000000000000000000004 111.0
YYD1_k127_4085589_2 Transketolase K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003182 452.0
YYD1_k127_4085589_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003448 386.0
YYD1_k127_4085589_4 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001311 351.0
YYD1_k127_4085589_5 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001297 289.0
YYD1_k127_4085589_6 PFAM Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006317 260.0
YYD1_k127_4085589_7 D,D-heptose 1,7-bisphosphate phosphatase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001126 235.0
YYD1_k127_4085589_8 PFAM NAD dependent epimerase dehydratase family K07071 - - 0.00000000000000000000000000000000000000000000000000000000002486 216.0
YYD1_k127_4085589_9 peptidase M23 - - - 0.000000000000000000000000000000000000000000000000000000002734 209.0
YYD1_k127_4086615_0 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 344.0
YYD1_k127_4086615_1 Glycosyl transferase family 2 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000005158 227.0
YYD1_k127_4086615_2 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.00000000000000000000000000000000000000000000000000001113 198.0
YYD1_k127_4096768_0 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002117 440.0
YYD1_k127_4096768_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000000000000000000000000000000000001576 147.0
YYD1_k127_4103474_0 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 473.0
YYD1_k127_4103474_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001984 245.0
YYD1_k127_4103474_2 2',5' RNA ligase - - - 0.0000000000000000000000000000000007734 137.0
YYD1_k127_4103474_3 ABC-type transport system involved in resistance to organic solvents permease component K02066 - - 0.0000000000000000000008614 99.0
YYD1_k127_4103474_4 DinB superfamily - - - 0.000000000001482 68.0
YYD1_k127_4124594_0 DNA polymerase K02337,K14162 - 2.7.7.7 7.4e-323 1012.0
YYD1_k127_4124594_1 ABC-type Na efflux pump, permease component K01992 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 366.0
YYD1_k127_4124594_2 ABC transporter K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 345.0
YYD1_k127_4124594_3 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 310.0
YYD1_k127_4124594_4 peptide-methionine (S)-S-oxide reductase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002406 279.0
YYD1_k127_4124594_5 TIGRFAM Protein of - - - 0.00000000005126 66.0
YYD1_k127_4147459_0 PFAM GH3 auxin-responsive promoter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002338 494.0
YYD1_k127_4147459_1 IMG reference gene - - - 0.00000000000000000000000000000000000001765 155.0
YYD1_k127_4147459_2 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.000000000000000000000000000000000004237 137.0
YYD1_k127_4154019_0 4Fe-4S binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003709 531.0
YYD1_k127_4154019_1 Pyridine nucleotide-disulphide oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005514 515.0
YYD1_k127_4154019_2 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001308 291.0
YYD1_k127_4154019_3 synthase K01737 - 4.1.2.50,4.2.3.12 0.000000000000000000000000000000000000000000000009475 176.0
YYD1_k127_4154019_4 Redoxin - - - 0.0000000000000000000000000000000000000000000004715 185.0
YYD1_k127_4154019_5 Excinuclease ABC subunit B - - - 0.00000000000000000000000000000000000000000166 167.0
YYD1_k127_4154325_0 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003916 430.0
YYD1_k127_4154325_1 sodium ion export across plasma membrane - - - 0.0000000000000000000009955 103.0
YYD1_k127_4154325_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000001042 61.0
YYD1_k127_4154325_3 Transposase DDE domain - - - 0.00000111 51.0
YYD1_k127_4154325_4 Predicted membrane protein (DUF2207) - - - 0.0009684 46.0
YYD1_k127_417274_0 ABC transporter K11085 - - 8.275e-203 648.0
YYD1_k127_417274_1 Cell wall formation K00075 - 1.3.1.98 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005756 359.0
YYD1_k127_417274_2 Transposase IS200 like - - - 0.0000000000000000000000000000000001306 135.0
YYD1_k127_417274_3 It is involved in the biological process described with response to stress - GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0008047,GO:0008150,GO:0009987,GO:0030234,GO:0031072,GO:0032781,GO:0043085,GO:0043462,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051087,GO:0051336,GO:0051345,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000002258 90.0
YYD1_k127_4175105_0 transcriptional regulatory protein - GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 346.0
YYD1_k127_4175105_1 Transmembrane and tetratricopeptide repeat containing 3 - GO:0001763,GO:0002009,GO:0003401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009887,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0012505,GO:0019222,GO:0030154,GO:0030162,GO:0030323,GO:0030324,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0040007,GO:0042176,GO:0042692,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048286,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048729,GO:0048731,GO:0048747,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0055001,GO:0055002,GO:0060255,GO:0060425,GO:0060429,GO:0060441,GO:0060447,GO:0060541,GO:0060560,GO:0060562,GO:0060602,GO:0061061,GO:0061136,GO:0061138,GO:0065007,GO:0080090,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364 - 0.00000000000000000000000000000000000000000000000002339 199.0
YYD1_k127_4175105_2 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000004041 87.0
YYD1_k127_4185421_0 Surface antigen - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 355.0
YYD1_k127_4185421_1 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001657 319.0
YYD1_k127_4185421_2 glycerol acyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002513 266.0
YYD1_k127_4185421_3 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000001084 179.0
YYD1_k127_4185421_4 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000001674 151.0
YYD1_k127_4185421_5 FtsZ-dependent cytokinesis - - - 0.00000000000000000000004777 111.0
YYD1_k127_4198815_0 Haemolysin-type calcium-binding repeat (2 copies) - - - 0.000000000000000000000000000000000002445 152.0
YYD1_k127_4198815_1 - - - - 0.0004512 44.0
YYD1_k127_4209024_0 Penicillin-binding Protein K05367 - 2.4.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 437.0
YYD1_k127_4209024_1 membrane - - - 0.00000000000000000000269 98.0
YYD1_k127_4219333_0 transport system involved in gliding motility, auxiliary component K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008235 413.0
YYD1_k127_4219333_1 TIGRFAM Gliding motility-associated ABC transporter permease protein GldF K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002053 254.0
YYD1_k127_4219333_2 COG1131 ABC-type multidrug transport system ATPase component K01990 - - 0.000000000000000003556 88.0
YYD1_k127_4235268_0 Bestrophin, RFP-TM, chloride channel K08994 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008009 555.0
YYD1_k127_4235268_1 - - - - 0.0000000000000000000000000000000000000000000006379 173.0
YYD1_k127_4235268_2 Protease prsW family - - - 0.000000000000000000000000000000000000000001606 164.0
YYD1_k127_4235268_3 Protease prsW family - - - 0.0000000000000000000000000000000000006074 149.0
YYD1_k127_4235268_4 phosphohydrolase - - - 0.000000000000000000000546 102.0
YYD1_k127_4235268_5 amine dehydrogenase activity - - - 0.00000000000000000751 92.0
YYD1_k127_4235268_6 nucleotidyltransferase activity - - - 0.00000000009544 70.0
YYD1_k127_4239433_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.091e-194 614.0
YYD1_k127_4239433_1 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000001125 249.0
YYD1_k127_4239433_2 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000002571 138.0
YYD1_k127_4243934_0 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000002308 226.0
YYD1_k127_4243934_1 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 0.000000000000000000000000000000000003045 139.0
YYD1_k127_4243934_2 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 0.000000000000000000007048 92.0
YYD1_k127_4243934_3 TonB-dependent Receptor Plug Domain - - - 0.00000000002273 66.0
YYD1_k127_4248429_0 Nitrous oxide reductase K00376 - 1.7.2.4 0.0 1168.0
YYD1_k127_4248429_1 lipoprotein involved in nitrous oxide reduction K19342 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002616 334.0
YYD1_k127_4248429_2 PFAM cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000394 205.0
YYD1_k127_4252775_0 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000008471 253.0
YYD1_k127_4270438_0 Sulfite exporter TauE/SafE K07090 - - 0.0000000000000000000000000000000000000000000000000000000000000000000003799 241.0
YYD1_k127_4270438_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000003734 229.0
YYD1_k127_4270438_2 Protein of unknown function (DUF3667) - - - 0.000000000000000000000001477 113.0
YYD1_k127_4270507_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 1.847e-255 794.0
YYD1_k127_4270507_1 2-methylthioadenine synthetase K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000008361 225.0
YYD1_k127_4270507_2 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.00000000000000000000000000000000000005979 147.0
YYD1_k127_4270507_3 ATP synthase K02114 - - 0.0000000000000000002417 89.0
YYD1_k127_4276209_0 Required for chromosome condensation and partitioning K03529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001284 456.0
YYD1_k127_4276209_1 Ribonuclease H-like K09776 - - 0.000000000000000000000009618 102.0
YYD1_k127_4276392_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000159 419.0
YYD1_k127_4276392_1 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.000000000000000000000000000000000000000000000000000000000000000000004933 243.0
YYD1_k127_4276392_2 Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA) K00912 - 2.7.1.130 0.000000000000000000000000000000000000000009097 159.0
YYD1_k127_4276392_3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.0000000000000000000000008764 119.0
YYD1_k127_4287400_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0 1241.0
YYD1_k127_4287400_1 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000000000000297 150.0
YYD1_k127_4292568_0 Uroporphyrinogen-III synthase K01719 - 4.2.1.75 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006696 343.0
YYD1_k127_4292568_1 Tocopherol cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 308.0
YYD1_k127_4292568_2 NUDIX domain - - - 0.000000000000000000000000000000000000000000000006212 179.0
YYD1_k127_4292568_3 TonB dependent receptor K02014 - - 0.00000000000006845 74.0
YYD1_k127_4292568_4 Domain of unknown function (DUF4271) - - - 0.000004316 58.0
YYD1_k127_4307038_0 Pyruvate phosphate dikinase K01007 - 2.7.9.2 6.037e-236 748.0
YYD1_k127_4307038_1 TLC ATP/ADP transporter K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 603.0
YYD1_k127_4307038_2 Beta-lactamase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201 495.0
YYD1_k127_4307038_3 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 316.0
YYD1_k127_4312336_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004742 346.0
YYD1_k127_4312336_1 drug metabolite-transporting permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001419 284.0
YYD1_k127_4312336_2 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000000088 236.0
YYD1_k127_4315294_0 SprB repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003426 273.0
YYD1_k127_4315294_1 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.000000000000000000000000000000000000000000000000000000003997 211.0
YYD1_k127_432113_0 SprB repeat - - - 1.867e-207 703.0
YYD1_k127_432113_1 Transcriptional regulator K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004192 278.0
YYD1_k127_432113_2 metallopeptidase activity - - - 0.000000000000000000005244 111.0
YYD1_k127_432893_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 GO:0005575,GO:0005622,GO:0005623,GO:0006950,GO:0006974,GO:0008150,GO:0009380,GO:0009987,GO:0032991,GO:0033554,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:1902494,GO:1905347,GO:1905348,GO:1990391 - 4.24e-221 696.0
YYD1_k127_4335163_0 Peptidase M16 inactive domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001914 444.0
YYD1_k127_4335163_1 Asparaginase, N-terminal K01424 - 3.5.1.1 0.00000000000000000000000000000000000000000000000000000000000000000004512 235.0
YYD1_k127_43413_0 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007405 457.0
YYD1_k127_43413_1 FMN-dependent dehydrogenase K00467 - 1.13.12.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004809 415.0
YYD1_k127_4341871_0 Phage shock protein A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 423.0
YYD1_k127_4341871_1 - - - - 0.0000000000000000000000801 101.0
YYD1_k127_4341871_2 NMT1-like family K02051 - - 0.0000000000000004982 82.0
YYD1_k127_4345307_0 Nucleotidyl transferase K15669 - 2.7.7.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 419.0
YYD1_k127_4345307_1 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005588 276.0
YYD1_k127_4345307_2 - - - - 0.000000000000000000000000000000000247 135.0
YYD1_k127_4359691_0 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001232 464.0
YYD1_k127_4359691_1 Response regulator receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001241 255.0
YYD1_k127_4359691_2 dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000002361 194.0
YYD1_k127_4359691_3 YceI-like domain - - - 0.00000000000000000000000000000000000000000000001745 177.0
YYD1_k127_4359691_4 Thioesterase superfamily K02614 - - 0.000000000000000000000000000000000000000000001906 168.0
YYD1_k127_4359691_5 PFAM Lipid polyisoprenoid-binding, YceI-like - - - 0.000000000000000000000000000003099 123.0
YYD1_k127_4359691_6 Cytochrome c - - - 0.000000000000000000000004041 105.0
YYD1_k127_4365661_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 622.0
YYD1_k127_4365661_1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004012 278.0
YYD1_k127_4365661_2 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.0007844 42.0
YYD1_k127_436697_0 IMG reference gene K13735 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004785 282.0
YYD1_k127_4383952_0 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 493.0
YYD1_k127_4383952_1 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000000000000000000000000000000000000000007109 194.0
YYD1_k127_4383952_2 PFAM Receptor family ligand binding region - - - 0.0000000000000000001397 102.0
YYD1_k127_4383952_3 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 0.000000000000002102 75.0
YYD1_k127_4384228_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000001333 230.0
YYD1_k127_4384228_1 spore germination - - - 0.000000000005037 67.0
YYD1_k127_4384228_2 Tetratricopeptide repeat - - - 0.0000002619 63.0
YYD1_k127_4391440_0 Catalyzes the formation of L-homocysteine from O- succinyl-L-homoserine (OSHS) and hydrogen sulfide K10764 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 506.0
YYD1_k127_4391440_1 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K00641 - 2.3.1.31 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009438 376.0
YYD1_k127_4391440_2 Peptidase family M28 - - - 0.0000000000000000000001394 99.0
YYD1_k127_4396445_0 Prolyl oligopeptidase family - - - 5.807e-294 922.0
YYD1_k127_4396445_1 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000001526 216.0
YYD1_k127_4396445_2 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000009996 209.0
YYD1_k127_4396445_3 - - - - 0.00000000007725 64.0
YYD1_k127_4398157_0 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002132 385.0
YYD1_k127_4398157_1 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000001061 256.0
YYD1_k127_4398157_2 Transposase IS200 like - - - 0.00000000000001271 74.0
YYD1_k127_440699_0 Superfamily I DNA and RNA K10742 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000007622 269.0
YYD1_k127_440699_1 PFAM Bacterial protein of - - - 0.000000000000001511 88.0
YYD1_k127_440699_2 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K00973,K04042,K16881 - 2.3.1.157,2.7.7.13,2.7.7.23,2.7.7.24,5.4.2.8 0.000003781 49.0
YYD1_k127_4413686_0 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 3.92e-242 775.0
YYD1_k127_4413686_1 Phosphate starvation-inducible protein PhoH K06217 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001454 437.0
YYD1_k127_4413686_2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002693 405.0
YYD1_k127_4413686_3 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000945 374.0
YYD1_k127_4413686_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001696 350.0
YYD1_k127_4413686_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000004776 264.0
YYD1_k127_4413686_6 Antibiotic biosynthesis monooxygenase - - - 0.000000000000004375 82.0
YYD1_k127_4416523_0 PFAM Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000007213 240.0
YYD1_k127_4416523_1 - - - - 0.0000000000000000000000000000000000000000000000000001634 188.0
YYD1_k127_4416523_2 Doxx family - - - 0.000000000000000008542 92.0
YYD1_k127_4416523_3 Doxx family - - - 0.00000000003294 76.0
YYD1_k127_4416523_4 Belongs to the ompA family K03286 - - 0.000000002814 70.0
YYD1_k127_4416523_5 - - - - 0.00000005295 57.0
YYD1_k127_4448201_0 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000000000000001636 240.0
YYD1_k127_4448201_1 CBS domain - - - 0.000000000000000000000000000000000000000000000006423 176.0
YYD1_k127_4450336_0 Belongs to the peptidase S8 family - - - 0.000000000000000000000000000000000000000001339 179.0
YYD1_k127_4461581_0 Sortilin, neurotensin receptor 3, - - - 0.0 1223.0
YYD1_k127_4461581_1 Peptidase family M1 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 444.0
YYD1_k127_4461581_2 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006331 302.0
YYD1_k127_4461581_3 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000002434 130.0
YYD1_k127_447137_0 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 9.69e-205 663.0
YYD1_k127_447137_1 Mate efflux family protein K03327 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005984 357.0
YYD1_k127_447137_2 LVIVD repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000183 359.0
YYD1_k127_447137_3 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000297 209.0
YYD1_k127_447137_4 RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000000000000000001694 194.0
YYD1_k127_447137_5 - - - - 0.00000000000000000000000000000551 125.0
YYD1_k127_4493575_0 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 GO:0003674,GO:0003824,GO:0004019,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 565.0
YYD1_k127_4493575_1 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003157 471.0
YYD1_k127_4493575_2 Belongs to the RimK family K05844 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009432,GO:0009605,GO:0009987,GO:0009991,GO:0016874,GO:0016879,GO:0016881,GO:0018169,GO:0018410,GO:0019538,GO:0031668,GO:0033554,GO:0036211,GO:0042802,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070739,GO:0071496,GO:0071704,GO:0140096,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 301.0
YYD1_k127_4493575_3 Belongs to the Fur family K03711 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004651 255.0
YYD1_k127_4493575_4 Protein of unknown function (DUF1698) - - - 0.0000000000000000000000000000000000000000000000002579 184.0
YYD1_k127_4493575_5 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951,K01139 - 2.7.6.5,3.1.7.2 0.0000000000000000001282 90.0
YYD1_k127_4494371_0 glycosyl transferase - - - 9.165e-220 688.0
YYD1_k127_4494371_1 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001635 593.0
YYD1_k127_4494371_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0034641,GO:0034645,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005479 554.0
YYD1_k127_4494371_3 Belongs to the 5'-nucleotidase family K01081 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008085 369.0
YYD1_k127_4494371_4 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000000000002693 189.0
YYD1_k127_4494371_5 5'-nucleotidase K01081 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000333 188.0
YYD1_k127_4494371_6 PFAM Peptidase M16 inactive domain - - - 0.000000000000000000000000000000000000000006862 160.0
YYD1_k127_4494371_7 - - - - 0.0000000000000000000000004721 111.0
YYD1_k127_4494371_8 Protein of unknown function (DUF3606) - - - 0.00004269 48.0
YYD1_k127_4494613_0 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002467 339.0
YYD1_k127_4494613_1 Protein of unknown function (DUF664) - - - 0.00000000000000000000000000000000000000000000000000000000005165 207.0
YYD1_k127_4494613_2 MraZ protein, putative antitoxin-like K03925 GO:0000976,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0043254,GO:0043565,GO:0044087,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2000142,GO:2000143,GO:2001141 - 0.000000000000000000000000000000000000000000002869 169.0
YYD1_k127_4495065_0 Aminotransferase class-V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005862 484.0
YYD1_k127_4495065_1 Belongs to the alkaline phosphatase family K01077 - 3.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002344 291.0
YYD1_k127_4495065_2 - - - - 0.0000000000000000000000000000000000000001373 163.0
YYD1_k127_4495065_3 - - - - 0.0000000000000000000003238 101.0
YYD1_k127_4497902_0 - - - - 0.0000000000000000000000000000000216 133.0
YYD1_k127_4497902_1 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.0000000000000000000000000000009335 122.0
YYD1_k127_4497902_2 Psort location Cytoplasmic, score 9.97 - - - 0.00000000001024 75.0
YYD1_k127_4497902_3 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0002223 43.0
YYD1_k127_4497902_4 Transposase IS200 like - - - 0.0002886 51.0
YYD1_k127_4497902_5 Alpha-tubulin suppressor and related RCC1 domain-containing - - - 0.0003116 44.0
YYD1_k127_4502451_0 Alpha/beta hydrolase family K01563,K22318 - 3.8.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000001054 255.0
YYD1_k127_4502451_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000003653 207.0
YYD1_k127_4502451_2 Phage late control gene D protein (GPD) K11904 - - 0.0000000006217 67.0
YYD1_k127_4511970_0 PFAM Glycosyl hydrolase family 3 C terminal domain K05349 - 3.2.1.21 7.351e-260 815.0
YYD1_k127_4511970_1 TonB dependent receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 334.0
YYD1_k127_4520331_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K07239 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004042 541.0
YYD1_k127_4520331_1 Membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002158 279.0
YYD1_k127_4520331_2 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K15727 - - 0.0000000000002344 70.0
YYD1_k127_4534253_0 Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily K01890 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494 6.1.1.20 1.414e-236 756.0
YYD1_k127_4551925_0 Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II K01897 - 6.2.1.3 3.76e-245 767.0
YYD1_k127_4551925_1 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004869 612.0
YYD1_k127_4551925_2 Protein of unknown function (DUF3109) - - - 0.000000000000000000000000000000000000000000000000000000000000002083 224.0
YYD1_k127_4551925_3 Type III secretion system lipoprotein chaperone (YscW) K09914 - - 0.00000003524 62.0
YYD1_k127_4561011_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009474 350.0
YYD1_k127_4561011_1 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008465 342.0
YYD1_k127_4561011_2 GTP cyclohydrolase I K01495 GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 3.5.4.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 296.0
YYD1_k127_4561011_3 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000000000000000000000000000002008 170.0
YYD1_k127_4561011_4 - - - - 0.0000006857 53.0
YYD1_k127_4564139_0 glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004657 419.0
YYD1_k127_4564139_1 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005865 325.0
YYD1_k127_4564139_2 Protein of unknown function (DUF4199) - - - 0.000001425 57.0
YYD1_k127_4577760_0 Two component regulator three Y - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004579 441.0
YYD1_k127_4577760_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000003848 117.0
YYD1_k127_4577760_2 COG3279 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000003109 89.0
YYD1_k127_4622765_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 0.000000000000000000000000000000000000000000002382 165.0
YYD1_k127_4622765_1 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog K03088 - - 0.0000000000000000000000000000000008321 134.0
YYD1_k127_4622765_2 - - - - 0.0000000000000001281 93.0
YYD1_k127_4624810_0 Aldehyde dehydrogenase family K00294,K13821 - 1.2.1.88,1.5.5.2 3.285e-264 822.0
YYD1_k127_4624810_1 glycosyl transferase family 2 K07011 - - 1.604e-213 681.0
YYD1_k127_4624810_2 Alpha amylase, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003297 488.0
YYD1_k127_4624810_3 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.00000000000000000000000000000000000000000000000000000000000000002576 226.0
YYD1_k127_4624810_4 Pseudouridine synthase K06179,K06180 - 5.4.99.23,5.4.99.24 0.0000000000000000000000000000000000000000000000004303 184.0
YYD1_k127_4624810_5 membrane protein (homolog of Drosophila rhomboid) - - - 0.000000000000000000000000000000000000000000009548 169.0
YYD1_k127_4624810_6 Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA K00783 - 2.1.1.177 0.00000000000000000000000000000000002421 140.0
YYD1_k127_4624810_7 Integral membrane protein (intg_mem_TP0381) - - - 0.0000000000000000000000000000000001097 142.0
YYD1_k127_4624810_8 - - - - 0.000000000000000000000000001779 123.0
YYD1_k127_4632836_0 PFAM Restriction endonuclease, type I, EcoRI, R subunit Type III, Res subunit, N-terminal - - - 0.000000000000000000000000000000002336 134.0
YYD1_k127_4632836_1 RelE toxin of RelE / RelB toxin-antitoxin system - - - 0.000000000000000000000000007682 112.0
YYD1_k127_4636878_0 Peptidase, family M20 M25 M40 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007287 475.0
YYD1_k127_4636878_1 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004327 324.0
YYD1_k127_4636878_2 PFAM FKBP-type peptidyl-prolyl cis-trans isomerase K03772,K03773 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000001634 218.0
YYD1_k127_4639679_0 COG1055 Na H antiporter NhaD and related arsenite - - - 3.938e-203 640.0
YYD1_k127_4639679_1 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway K00351 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 573.0
YYD1_k127_4639679_10 PFAM Outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001454 281.0
YYD1_k127_4639679_11 signal transduction protein with CBS domains - - - 0.0000000000000000000000000000000000000000000000000002048 188.0
YYD1_k127_4639679_12 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00348 - 1.6.5.8 0.000000000000000000000000000000000000000000000000004388 190.0
YYD1_k127_4639679_13 PFAM Bacterial regulatory proteins, tetR family - - - 0.00000000000000000000000000000000000000005152 158.0
YYD1_k127_4639679_14 RF-1 domain K15034 - - 0.000000000000000000000000004529 115.0
YYD1_k127_4639679_15 chain release factor K15034 - - 0.000000000002318 72.0
YYD1_k127_4639679_16 - - - - 0.0000000003574 62.0
YYD1_k127_4639679_2 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000612 489.0
YYD1_k127_4639679_3 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K00346 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003137 479.0
YYD1_k127_4639679_4 NQR2, RnfD, RnfE family K00347 - 1.6.5.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 467.0
YYD1_k127_4639679_5 Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 402.0
YYD1_k127_4639679_6 Rnf-Nqr subunit, membrane protein K00349 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006912 312.0
YYD1_k127_4639679_7 Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein K03734 - 2.7.1.180 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002697 308.0
YYD1_k127_4639679_8 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002428 293.0
YYD1_k127_4639679_9 NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol K00350 - 1.6.5.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001385 278.0
YYD1_k127_4642757_0 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001186 584.0
YYD1_k127_4642757_1 domain, Protein K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 538.0
YYD1_k127_4651998_0 OmpA MotB domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 400.0
YYD1_k127_4651998_1 Predicted periplasmic lipoprotein (DUF2279) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002929 297.0
YYD1_k127_4651998_2 long-chain fatty acid transporting porin activity K06076 - - 0.00000000000000000000000000000000000000000000000000004729 200.0
YYD1_k127_4652657_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004458 466.0
YYD1_k127_4652657_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004226 316.0
YYD1_k127_4652657_2 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000000000000001135 186.0
YYD1_k127_4668503_0 metallophosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 372.0
YYD1_k127_4668503_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003743 276.0
YYD1_k127_4668503_2 - - - - 0.000000002589 62.0
YYD1_k127_4673838_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002754 404.0
YYD1_k127_4673838_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004003 381.0
YYD1_k127_4673838_2 Uncharacterized protein conserved in bacteria (DUF2179) - - - 0.00000000000000000000000000000000000000000000000000000000000000000001589 237.0
YYD1_k127_4673838_3 - - - - 0.000000000000000006599 90.0
YYD1_k127_4674273_0 COG0022 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004734 561.0
YYD1_k127_4674273_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005474 538.0
YYD1_k127_4674273_2 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003288 378.0
YYD1_k127_4674273_3 Large extracellular alpha-helical protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 346.0
YYD1_k127_4674273_4 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000003583 236.0
YYD1_k127_4674273_5 Domain of unknown function (DUF697) - - - 0.00000000000000000000000000000000000000000000000000000000000000004329 228.0
YYD1_k127_4674273_6 Acyl carrier protein phosphodiesterase - - - 0.0000000000000000000000000000000000002777 147.0
YYD1_k127_4674273_7 Belongs to the ABC-4 integral membrane protein family. FtsX subfamily K09811 GO:0005575,GO:0005618,GO:0005623,GO:0006928,GO:0008150,GO:0009274,GO:0009276,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0030312,GO:0030313,GO:0031975,GO:0040011,GO:0043207,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051301,GO:0051674,GO:0051704,GO:0051707,GO:0071944,GO:0071976 - 0.000000000000000000001087 105.0
YYD1_k127_4680141_0 PA14 K08738 - - 0.0 1319.0
YYD1_k127_4680141_1 Histidine kinase K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005443 409.0
YYD1_k127_4680141_2 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 361.0
YYD1_k127_4680141_3 Polyketide cyclase - - - 0.000000000000000000000000000000000001747 146.0
YYD1_k127_469169_0 Di-haem cytochrome c peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 453.0
YYD1_k127_469169_1 cytochrome C peroxidase K00428 - 1.11.1.5 0.00000000000000000000000000000000000000000000000000000000000117 212.0
YYD1_k127_469169_3 protein related to plant photosystem II stability assembly factor - - - 0.0000005374 55.0
YYD1_k127_4699675_0 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006722 474.0
YYD1_k127_4710095_0 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021 304.0
YYD1_k127_4710095_1 PFAM Acyl-CoA reductase (LuxC) - - - 0.0000000000000000000000000000000000000000000000000000000001722 208.0
YYD1_k127_4710095_2 Outer membrane protein protective antigen OMA87 - - - 0.0000000000000000000000000000000000000000000000001863 187.0
YYD1_k127_4713728_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 3.92e-197 627.0
YYD1_k127_4713728_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 562.0
YYD1_k127_471769_0 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000000000000000000000005563 241.0
YYD1_k127_471769_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002497 248.0
YYD1_k127_471769_2 PFAM NAD-dependent epimerase dehydratase - - - 0.0000000000000000000000000000000000000000000000000000000000000009784 231.0
YYD1_k127_471769_3 oxidoreductase activity, acting on CH-OH group of donors - - - 0.00000000001306 68.0
YYD1_k127_471769_4 EthD domain - - - 0.00000001977 64.0
YYD1_k127_471769_5 Cysteine dioxygenase type I K00456 - 1.13.11.20 0.00000004336 65.0
YYD1_k127_4725268_0 Zn_pept - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003936 521.0
YYD1_k127_4725268_1 Protein of unknown function (DUF2851) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004951 384.0
YYD1_k127_4725268_2 PFAM MotA TolQ ExbB proton channel K03561 - - 0.0000000000000000000000000000000000000000000000000000009449 199.0
YYD1_k127_4725268_3 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.00000000000000000000000000000000000000000000003694 174.0
YYD1_k127_4725268_4 Biopolymer transport protein ExbD TolR K03559 - - 0.0000000000000000000000000000000002459 135.0
YYD1_k127_4734596_0 COG1022 Long-chain acyl-CoA synthetases (AMP-forming) K01897 - 6.2.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 516.0
YYD1_k127_4742202_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 0.00000000000000000000000000000000000000000000000000000009493 199.0
YYD1_k127_4742202_1 RNA methyltransferase, RsmD K08316 - 2.1.1.171 0.00000000000000000000000000000000000000000000000003154 185.0
YYD1_k127_4742728_0 Phosphate acyltransferases K07003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001629 602.0
YYD1_k127_4742728_1 Uncharacterized protein conserved in bacteria (DUF2062) - - - 0.0000000000000000000000000000000000000000000000000000000000000007909 225.0
YYD1_k127_4743650_0 SPTR CHU large protein - - - 0.00000000000000000000000000000000000032 155.0
YYD1_k127_4743650_1 Trypsin-like peptidase domain K04771 - 3.4.21.107 0.0000000002866 73.0
YYD1_k127_4743650_2 PFAM PKD domain - - - 0.000007352 58.0
YYD1_k127_4743650_3 anaphase-promoting complex binding - - - 0.00001003 51.0
YYD1_k127_4751192_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005621 471.0
YYD1_k127_4751192_1 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 GO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616 5.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001507 281.0
YYD1_k127_4751192_2 SprB repeat - - - 0.00000000001187 74.0
YYD1_k127_4757978_0 DNA photolyase K01669 - 4.1.99.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008537 368.0
YYD1_k127_4757978_1 protein SCO1 SenC PrrC involved in biogenesis of respiratory and photosynthetic systems K07152 - - 0.0000000000000000000000000000000000000000000000000000000000000008749 224.0
YYD1_k127_4757978_2 metallopeptidase activity - - - 0.00000000000000000000000000000000000000000009711 183.0
YYD1_k127_4757978_3 Cytochrome C oxidase, cbb3-type, subunit III K00368,K00405 - 1.7.2.1 0.00000000000000000004781 94.0
YYD1_k127_4757978_4 - - - - 0.000000002195 64.0
YYD1_k127_4757978_5 Methyltransferase domain - - - 0.000003583 49.0
YYD1_k127_4757999_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001671 313.0
YYD1_k127_4757999_1 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000003003 263.0
YYD1_k127_4757999_2 Protein of unknown function (DUF1295) - - - 0.0000000000000000000000000000000000000000000000000000000000000141 218.0
YYD1_k127_4759450_0 PFAM TonB-dependent Receptor K16091 - - 6.867e-274 859.0
YYD1_k127_4759450_1 Protein of unknown function (DUF3179) - - - 0.0000000000000000000000000000000000002953 144.0
YYD1_k127_4763124_0 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001768 569.0
YYD1_k127_4763124_1 PFAM Peptidase M1 membrane alanine aminopeptidase K01256 - 3.4.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004943 591.0
YYD1_k127_4763124_2 Domain of Unknown function (DUF542) K07322 - - 0.00000000000000000000000000003777 118.0
YYD1_k127_4763124_3 - - - - 0.00000000000000000001738 97.0
YYD1_k127_4767578_0 PFAM Cache K08738 - - 0.0000000000000000000000000000000000000000000000000000000003683 220.0
YYD1_k127_4767578_1 PFAM Cupin 2 conserved barrel domain protein - - - 0.000000000000000000001851 108.0
YYD1_k127_4769865_0 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 8.745e-205 642.0
YYD1_k127_4769865_1 Bacterial lipid A biosynthesis acyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001077 391.0
YYD1_k127_4769865_2 Belongs to the beta-ketoacyl-ACP synthases family K00647 - 2.3.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004944 394.0
YYD1_k127_4769865_3 Thioesterase-like superfamily K07107 - - 0.0000000000000000000000000000000000000000000000000000004873 196.0
YYD1_k127_4769865_4 - - - - 0.000000000000000000000000000000000000005248 153.0
YYD1_k127_4769865_5 dehydratase - - - 0.00000000000000000000000000000000004762 138.0
YYD1_k127_4769865_6 acyl carrier protein K02078 - - 0.000000000000000000000000000000001427 132.0
YYD1_k127_4769865_7 O-methyltransferase - - - 0.000001522 51.0
YYD1_k127_4769865_8 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.000134 44.0
YYD1_k127_4784110_0 Chaperone of endosialidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106 536.0
YYD1_k127_4784110_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000002056 241.0
YYD1_k127_4784110_2 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000002023 182.0
YYD1_k127_4784110_3 tail collar domain protein - - - 0.00000000000000000009806 106.0
YYD1_k127_4790119_0 COGs COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 331.0
YYD1_k127_4790119_1 fatty acid desaturase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 301.0
YYD1_k127_4790119_2 Uncharacterised protein family (UPF0104) K07027 - - 0.00000000000000000000000000000000000000000000000001127 192.0
YYD1_k127_4790119_3 - - - - 0.0000000000000000002404 99.0
YYD1_k127_4800508_0 mechanosensitive ion channel - - - 0.0000000000000000000000000000001441 135.0
YYD1_k127_4800508_1 - - - - 0.00000000000000007055 88.0
YYD1_k127_4821244_0 RagB SusD domain protein K21572 - - 2.47e-285 893.0
YYD1_k127_4821244_1 TonB dependent receptor K21573 - - 4.22e-255 808.0
YYD1_k127_4821244_2 SusE outer membrane protein K21571 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004608 302.0
YYD1_k127_4825113_0 SprB repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001957 600.0
YYD1_k127_4833477_0 cellulase activity - - - 0.000000000000000000000000000000000000000000000000000000716 221.0
YYD1_k127_4833477_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000000000000000000000000000000000002357 196.0
YYD1_k127_4833477_2 metallopeptidase activity K12287 - - 0.0000000000002351 85.0
YYD1_k127_4833477_3 domain, Protein - - - 0.0002151 48.0
YYD1_k127_4857476_0 Fungalysin metallopeptidase (M36) - - - 0.0 1192.0
YYD1_k127_4857476_1 luciferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 507.0
YYD1_k127_4857476_2 Immunoglobulin - - - 0.0000000000000000000000000000000000000000000000000000001574 216.0
YYD1_k127_4857476_3 Thioredoxin K01829 - 5.3.4.1 0.00000000000000000000000000000001592 132.0
YYD1_k127_4857476_4 23S rRNA-intervening sequence protein - - - 0.000000000000000000000002026 106.0
YYD1_k127_4857476_5 superoxide dismutase activity - - - 0.0000000000000000000002292 104.0
YYD1_k127_4857476_6 Concanavalin A-like lectin/glucanases superfamily - - - 0.0000009048 62.0
YYD1_k127_4859809_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 2.381e-291 908.0
YYD1_k127_4859809_1 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 364.0
YYD1_k127_4859809_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000005764 197.0
YYD1_k127_4859809_3 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.000000000000000000000000000000000000001916 156.0
YYD1_k127_4859809_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.000000000000000000000000000000000000005095 149.0
YYD1_k127_4859809_5 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000005483 147.0
YYD1_k127_4862381_0 Tyrosine recombinase XerC K04763 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 369.0
YYD1_k127_4862381_1 Bacterial Ig-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001473 297.0
YYD1_k127_4862381_2 ABC transporter, ATP-binding protein K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000001665 234.0
YYD1_k127_4862381_3 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000000005637 132.0
YYD1_k127_4862381_4 ABC transporter K06861 - - 0.00000000000000000000000003852 108.0
YYD1_k127_4862381_5 Outer membrane protein beta-barrel family - - - 0.00000003507 56.0
YYD1_k127_4875558_0 IMG reference gene - - - 0.0000000000000000000000000000000000000000000000000000000000001855 230.0
YYD1_k127_4875558_1 IMG reference gene - - - 0.0000000000000000000000000000000001274 152.0
YYD1_k127_4875590_0 Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001982 604.0
YYD1_k127_4875590_1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 407.0
YYD1_k127_4875590_2 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000006077 186.0
YYD1_k127_4875590_3 Belongs to the SUA5 family - - - 0.0000000000000000000000000000000000000007428 155.0
YYD1_k127_4875590_4 heme copper-type cytochrome quinol oxidase, subunit 3 K02276 - 1.9.3.1 0.00000000000000000000000004986 115.0
YYD1_k127_48800_0 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.000000000000000000000000000000000000000000000000000000000000000002722 238.0
YYD1_k127_48800_1 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process - - - 0.0000000000000000000000000000000000000000000000000000673 198.0
YYD1_k127_4881732_0 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 8.302e-204 646.0
YYD1_k127_4881732_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023 561.0
YYD1_k127_4881732_2 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001393 306.0
YYD1_k127_4881732_3 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 GO:0000035,GO:0000036,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016053,GO:0019637,GO:0019752,GO:0019842,GO:0031177,GO:0032787,GO:0033218,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044620,GO:0046394,GO:0046467,GO:0046493,GO:0048037,GO:0051192,GO:0071704,GO:0072330,GO:0072341,GO:0090407,GO:0140104,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 - 0.00000000000000000000000000000006889 125.0
YYD1_k127_4881732_4 PFAM Tetratricopeptide - - - 0.000001435 54.0
YYD1_k127_4896912_0 TonB-linked outer membrane protein, SusC RagA family - - - 7.258e-257 816.0
YYD1_k127_4905391_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005766 561.0
YYD1_k127_4905391_1 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00526 - 1.17.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 499.0
YYD1_k127_4905391_2 Mg2 transporter protein, CorA family protein K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006974 401.0
YYD1_k127_4905391_3 ABC-type transport system involved in lipoprotein release permease component K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 391.0
YYD1_k127_4905391_4 Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides K00525 - 1.17.4.1 0.0000000000000000000000000002248 115.0
YYD1_k127_4905391_5 - - - - 0.000000000000000000000000001641 120.0
YYD1_k127_4905391_6 reductase, small chain K00526 - 1.17.4.1 0.00000000003477 64.0
YYD1_k127_4925571_0 Sortilin, neurotensin receptor 3, - - - 0.0 1281.0
YYD1_k127_4925571_1 Domain of unknown function (DUF5122) beta-propeller - - - 0.00000000001761 66.0
YYD1_k127_4932302_0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 5.598e-209 659.0
YYD1_k127_4932302_1 Phage integrase, N-terminal SAM-like domain - - - 0.00004319 48.0
YYD1_k127_493293_0 Tricorn protease C1 domain K08676 - - 0.0 1251.0
YYD1_k127_493293_1 Inward rectifier potassium channel K08715 - - 0.000000000000000000000000000007953 123.0
YYD1_k127_4936675_0 C-terminal domain of CHU protein family - - - 1.5e-230 761.0
YYD1_k127_4944004_0 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001557 280.0
YYD1_k127_4944004_1 Cupin domain protein - - - 0.00000000000000000000000000000000000000004888 153.0
YYD1_k127_4944004_2 - - - - 0.000000000000000000000000000001273 126.0
YYD1_k127_4944004_3 Belongs to the UPF0337 (CsbD) family - - - 0.00000005178 57.0
YYD1_k127_4945551_0 ATP-dependent DNA helicase RecQ K03654 - 3.6.4.12 1.692e-305 952.0
YYD1_k127_4945551_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 517.0
YYD1_k127_4945551_2 Thioredoxin - - - 0.000000000000000000000000000000000000000000000000003489 188.0
YYD1_k127_4945551_3 Outer membrane protein Omp28 - - - 0.000000000000000000000000000000000000000000000001284 184.0
YYD1_k127_4945551_4 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000007069 66.0
YYD1_k127_4946997_0 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007755 473.0
YYD1_k127_4946997_1 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004151 459.0
YYD1_k127_4946997_2 Pkd domain containing protein - - - 0.00000000000000000000000000000000007099 153.0
YYD1_k127_4950108_0 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 307.0
YYD1_k127_4950108_1 HAD-hyrolase-like K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000004236 172.0
YYD1_k127_4950108_2 D-alanyl-D-alanine carboxypeptidase - - - 0.000000000000000000000000000000000000001507 157.0
YYD1_k127_4950108_3 DoxX K15977 - - 0.00000000000000000000000000007532 120.0
YYD1_k127_4950108_4 - - - - 0.00000003295 64.0
YYD1_k127_4958480_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000295 611.0
YYD1_k127_4958480_1 Bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006491 348.0
YYD1_k127_4958480_2 glucose-1-phosphate thymidylyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007286 332.0
YYD1_k127_4958480_3 Spermidine synthase K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000002187 195.0
YYD1_k127_4958480_4 Ribosomal protein L31 K02909 - - 0.0000000000000000000000000000000000002964 143.0
YYD1_k127_4958480_5 Sugar nucleotidyl transferase - - - 0.0000000000000000000000000000000000004619 145.0
YYD1_k127_4958480_6 Belongs to the UPF0102 family K07460 - - 0.0000000000000000000000000000002417 127.0
YYD1_k127_4959362_0 Belongs to the group II decarboxylase family K01580,K01634 - 4.1.1.15,4.1.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006271 580.0
YYD1_k127_4959362_2 Major facilitator superfamily K06902 - - 0.000000000000001645 78.0
YYD1_k127_4959362_3 - - - - 0.00000000000001337 79.0
YYD1_k127_4962334_0 Asparaginyl-tRNA synthetase K01893 - 6.1.1.22 9.403e-225 705.0
YYD1_k127_4962334_1 Ion channel K10716 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001053 270.0
YYD1_k127_4962334_2 - - - - 0.000000000000008372 81.0
YYD1_k127_4962334_4 GDYXXLXY protein - - - 0.000000006584 59.0
YYD1_k127_4965925_0 Pfam:SusD K21572 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 501.0
YYD1_k127_4965925_1 TonB-linked outer membrane protein, SusC RagA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005559 385.0
YYD1_k127_4965925_2 Glycosyl hydrolase family 30 beta sandwich domain K01201 - 3.2.1.45 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 376.0
YYD1_k127_4967826_0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity - - - 0.000000000000000000000000000000000000001804 149.0
YYD1_k127_4967826_1 PFAM Receptor L domain - - - 0.000000000000000000000005965 110.0
YYD1_k127_4967826_2 PFAM Receptor L domain - - - 0.00000000000008887 79.0
YYD1_k127_4967826_3 - - - - 0.000004332 56.0
YYD1_k127_4967826_4 Pkd domain containing protein - - - 0.000004827 59.0
YYD1_k127_4969859_0 Phosphate acyltransferases K07003 - - 1.085e-242 766.0
YYD1_k127_4969859_1 Aromatic amino acid lyase K01745,K10774 - 4.3.1.23,4.3.1.3 1.752e-227 715.0
YYD1_k127_4969859_2 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase - - - 7.844e-214 677.0
YYD1_k127_4969859_3 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001474 584.0
YYD1_k127_4969859_4 AMP-binding enzyme K01912 - 6.2.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 552.0
YYD1_k127_4969859_5 KR domain K00023,K00059 - 1.1.1.100,1.1.1.36 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000752 292.0
YYD1_k127_4969859_6 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000000000000000461 138.0
YYD1_k127_500642_0 Carbamoyl-phosphate synthase K01955 - 6.3.5.5 0.0 1572.0
YYD1_k127_500642_1 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000004233 228.0
YYD1_k127_500732_0 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 1.819e-201 634.0
YYD1_k127_500732_1 Belongs to the CarA family K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002454 491.0
YYD1_k127_500732_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 411.0
YYD1_k127_500732_3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000005178 220.0
YYD1_k127_500732_4 ribosomal protein l17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001235 190.0
YYD1_k127_500732_5 Septum formation inhibitor - - - 0.000000000000239 75.0
YYD1_k127_501212_0 TonB dependent receptor K16087 - - 6.886e-318 992.0
YYD1_k127_501212_1 arginyl-trna synthetase - - - 0.0000000000003541 80.0
YYD1_k127_5014420_0 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006746 377.0
YYD1_k127_5014420_1 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000001747 250.0
YYD1_k127_5015703_0 Belongs to the heme-copper respiratory oxidase family K15862 - 1.9.3.1 0.0 1198.0
YYD1_k127_5015703_1 cytochrome c oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004088 563.0
YYD1_k127_5015703_2 PFAM Cytochrome c, class I K00406 - - 0.000000000000000000000000000000000000000000000000000000000000000000001071 250.0
YYD1_k127_5015703_3 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 0.00000000000000000000000000000000000000000000002071 176.0
YYD1_k127_5015703_4 Cytochrome oxidase maturation protein - - - 0.000000000005953 66.0
YYD1_k127_5015703_5 Cbb3-type cytochrome oxidase component FixQ - - - 0.000000008631 57.0
YYD1_k127_5019848_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002176 420.0
YYD1_k127_5019848_1 ABC transporter K06158 - - 0.00000000000000000001199 97.0
YYD1_k127_5026427_0 TonB-dependent Receptor Plug Domain - - - 1.127e-296 932.0
YYD1_k127_5026427_2 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000005401 190.0
YYD1_k127_5026427_3 sporulation - - - 0.000286 52.0
YYD1_k127_5031089_0 cellulose binding - - - 0.00000000000000000000000009884 124.0
YYD1_k127_5031089_1 Calcineurin-like phosphoesterase - - - 0.0000000002198 74.0
YYD1_k127_5031089_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.0004512 44.0
YYD1_k127_503991_0 domain protein - - - 0.000000000000000000000000000007449 138.0
YYD1_k127_5041554_0 Two component regulator propeller K19694 - - 0.000000000000000000000000000003437 135.0
YYD1_k127_5041554_1 Chaperone of endosialidase - - - 0.000000000000000000002517 108.0
YYD1_k127_5041554_2 Chaperone of endosialidase - - - 0.000000000000001473 90.0
YYD1_k127_5041554_3 - - - - 0.000000000004702 78.0
YYD1_k127_5044974_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003959 474.0
YYD1_k127_5044974_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805 464.0
YYD1_k127_5044974_2 NADH-quinone oxidoreductase subunit E K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000001956 217.0
YYD1_k127_504534_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003382 460.0
YYD1_k127_504534_1 SprB repeat - - - 0.00000000000000000000000000000000000000000000000000000000002802 222.0
YYD1_k127_504534_2 Belongs to the bacterial ribosomal protein bL28 family K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000003961 118.0
YYD1_k127_504534_3 Belongs to the bacterial ribosomal protein bL33 family K02913 - - 0.00000000000000000000000000007405 115.0
YYD1_k127_504534_5 Reeler domain - - - 0.000000000000001776 86.0
YYD1_k127_5053674_0 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 4.324e-227 711.0
YYD1_k127_5053674_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.00000000000000000000000000000000000000002074 156.0
YYD1_k127_5053674_2 NAD(P)H-binding - - - 0.00000000005147 65.0
YYD1_k127_5059473_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 3.897e-239 745.0
YYD1_k127_5059473_1 Transglycosylase SLT domain K08307 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002887 279.0
YYD1_k127_5072566_0 Cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000000000006329 243.0
YYD1_k127_5072566_1 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.00000000000000000000000000000000000000000000000004332 192.0
YYD1_k127_5075309_1 Pkd domain containing protein - - - 0.00000000000000000000009324 115.0
YYD1_k127_507692_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000000009616 158.0
YYD1_k127_507692_1 SPTR CHU large protein - - - 0.00000000000000000003617 106.0
YYD1_k127_5092312_0 Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle K01595 - 4.1.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005043 484.0
YYD1_k127_5102456_0 Phosphoesterase PA-phosphatase related - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004117 534.0
YYD1_k127_5102456_1 COG1233 Phytoene dehydrogenase and related K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000222 447.0
YYD1_k127_5102456_2 Squalene phytoene synthase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001762 354.0
YYD1_k127_5102456_3 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003632 318.0
YYD1_k127_5102456_4 signal transduction histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005604 310.0
YYD1_k127_5102456_5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K07665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001854 276.0
YYD1_k127_5102456_6 Beta-carotene hydroxylase K15746 - 1.14.15.24 0.0000000000000000000000000000000000000000000000000000004053 197.0
YYD1_k127_5102456_7 TIGRFAM lycopene cyclase domain - - - 0.0000000000000000000000000000000000000000000000000000116 199.0
YYD1_k127_5102456_8 - - - - 0.00000000000000000000000000001801 123.0
YYD1_k127_5115629_0 PFAM FAD dependent oxidoreductase K15736 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 458.0
YYD1_k127_5115629_1 PFAM Scaffold protein Nfu NifU N terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001525 316.0
YYD1_k127_5115629_2 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000005579 245.0
YYD1_k127_5115629_3 GlcNAc-PI de-N-acetylase K01463 - - 0.0000000000000000000000000000000002989 141.0
YYD1_k127_5117377_0 D-isomer specific 2-hydroxyacid dehydrogenase K00018,K00058 - 1.1.1.29,1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 367.0
YYD1_k127_5117377_1 Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine K00684 - 2.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004708 269.0
YYD1_k127_5117377_2 PFAM EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000007628 220.0
YYD1_k127_5117377_3 PFAM O-methyltransferase K00588 - 2.1.1.104 0.0000000000000000000000000000000000000000000000000000009588 201.0
YYD1_k127_5117377_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000000000000000006651 193.0
YYD1_k127_5117377_5 Clp protease adaptor protein ClpS K06891 - - 0.000000000000000000000000331 111.0
YYD1_k127_5117377_6 dehydratase K02372 - 4.2.1.59 0.0000000000000000000006735 99.0
YYD1_k127_5117377_7 - - - - 0.000000000001785 70.0
YYD1_k127_5141462_0 Peptidase S8 and S53 subtilisin kexin sedolisin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001881 430.0
YYD1_k127_5144060_0 Transport of potassium into the cell K03549 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004275 360.0
YYD1_k127_5144060_1 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002489 280.0
YYD1_k127_5144060_2 Protein conserved in bacteria - - - 0.000000000000000005404 90.0
YYD1_k127_5151317_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003221 402.0
YYD1_k127_5151317_1 histidine kinase DNA gyrase B - - - 0.00000000000000000000000000001009 127.0
YYD1_k127_5175697_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003344 331.0
YYD1_k127_5175697_1 Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ K03687 GO:0000166,GO:0000774,GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0017076,GO:0030234,GO:0030554,GO:0036094,GO:0050790,GO:0051082,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0097159,GO:0098772,GO:1901265,GO:1901363 - 0.00000000000000000000000000000000000000000000000149 180.0
YYD1_k127_5175697_2 Domain of unknown function (DUF4369) - - - 0.00000000000000000000000000000000000000000008262 167.0
YYD1_k127_5179649_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001457 320.0
YYD1_k127_5179649_1 COGs COG3712 Fe2 -dicitrate sensor membrane component - - - 0.0000000000000000000000000000000000000000000000000000000009966 214.0
YYD1_k127_5179649_2 Sigma-70, region 4 - - - 0.000000000000000000000000000000007444 134.0
YYD1_k127_5179649_3 - - - - 0.0000000000000000000000000009492 122.0
YYD1_k127_5179649_4 - - - - 0.0000000000000000000000722 106.0
YYD1_k127_5186292_0 TonB dependent receptor - - - 8.274e-212 672.0
YYD1_k127_5186292_1 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002615 463.0
YYD1_k127_5186292_2 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003987 389.0
YYD1_k127_5186292_3 beta-1,4-mannooligosaccharide phosphorylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005308 370.0
YYD1_k127_5186292_4 Binding-protein-dependent transport system inner membrane component K02026 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002732 347.0
YYD1_k127_5186292_5 AraC type - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006964 336.0
YYD1_k127_5186292_6 Highly conserved protein containing a thioredoxin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008389 329.0
YYD1_k127_5190890_0 PFAM MotA TolQ ExbB proton channel K03561 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 356.0
YYD1_k127_5190890_1 PFAM Tetratricopeptide - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007748 316.0
YYD1_k127_5190890_10 Oxygen tolerance - - - 0.0000004534 57.0
YYD1_k127_5190890_2 Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins K03832 - - 0.000000000000000000000000000000000000000000000000000000000000000000158 239.0
YYD1_k127_5190890_3 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000001071 224.0
YYD1_k127_5190890_4 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000000000000000000000000000000000000000000003127 216.0
YYD1_k127_5190890_5 PFAM Biopolymer transport protein ExbD TolR - - - 0.0000000000000000000000000000000000000000000000000000000002507 208.0
YYD1_k127_5190890_6 ABC-type phosphate transport system periplasmic K02040 - - 0.000000000000000000000000000000000000000000003549 176.0
YYD1_k127_5190890_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000004126 125.0
YYD1_k127_5190890_8 von Willebrand factor, type A K07114 - - 0.000000000000000000000000008245 115.0
YYD1_k127_5190890_9 Oxygen tolerance - - - 0.00000000000000000007828 96.0
YYD1_k127_5197203_0 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 539.0
YYD1_k127_5197203_1 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007226 530.0
YYD1_k127_5197203_2 Thermophilic metalloprotease (M29) K19689 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003989 431.0
YYD1_k127_5197203_3 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003663 341.0
YYD1_k127_5197203_4 - - - - 0.0000000000000000000004976 107.0
YYD1_k127_5216275_0 Flavin-binding monooxygenase-like K07222 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 362.0
YYD1_k127_5216275_1 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000002193 116.0
YYD1_k127_5216996_0 chlorophyll binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008811 338.0
YYD1_k127_5216996_1 protein CHP03519, membrane, Bacteroidetes - - - 0.00000000000000000000000000000000000000000000000000000004842 206.0
YYD1_k127_5216996_2 PKD domain containing protein - - - 0.000000000000000000000002759 107.0
YYD1_k127_5219942_0 Patatin-like phospholipase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000738 452.0
YYD1_k127_5219942_1 protein related to plant photosystem II stability assembly factor - - - 0.00004338 53.0
YYD1_k127_5221479_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 1.219e-310 957.0
YYD1_k127_5221479_1 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000000000001975 202.0
YYD1_k127_5221479_2 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000004172 184.0
YYD1_k127_5221479_3 - - - - 0.000000000000000000000000000007551 122.0
YYD1_k127_5224867_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0 1397.0
YYD1_k127_5224867_1 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000029 295.0
YYD1_k127_5224867_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000006348 223.0
YYD1_k127_5224867_3 23S rRNA-intervening sequence protein - - - 0.000000000000000000000000000001001 124.0
YYD1_k127_5224867_4 FG-GAP repeat - - - 0.00000000000007486 74.0
YYD1_k127_5226680_0 Cytochrome C assembly protein - - - 0.0 1031.0
YYD1_k127_5226680_1 TIGRFAM A G-specific adenine glycosylase K03575 - - 0.000000000000000000000000001198 118.0
YYD1_k127_5231066_0 glutamate decarboxylase activity K01593 - 4.1.1.105,4.1.1.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002352 501.0
YYD1_k127_5231066_1 RmuC family K09760 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 447.0
YYD1_k127_5231066_2 COG1233 Phytoene dehydrogenase and related K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.0000000000000000000000000000000000000000000000000000000000000000000000002154 250.0
YYD1_k127_5231066_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000033 225.0
YYD1_k127_5231066_4 Protein of unknown function (DUF1304) K08987 - - 0.00000000000000000000000000000000000000000000000005006 181.0
YYD1_k127_5240667_0 metallopeptidase activity K12287 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006312 313.0
YYD1_k127_5240667_1 PFAM Prenyltransferase squalene oxidase - - - 0.00000000000000000000000000000000000000000000000000000004116 213.0
YYD1_k127_5264798_0 Dimerisation domain of Zinc Transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003482 435.0
YYD1_k127_5264798_1 Prolyl oligopeptidase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009516 425.0
YYD1_k127_5268811_0 ABC transporter K06158 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004403 527.0
YYD1_k127_5268811_1 acr, cog1678 K07735 - - 0.0000000000000000000000000000000000000000000000000000000000000003854 224.0
YYD1_k127_5268811_2 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.0000000000000000000006735 97.0
YYD1_k127_5269230_0 metallocarboxypeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000374 383.0
YYD1_k127_5269230_1 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000001721 121.0
YYD1_k127_5273551_0 Bacterial regulatory helix-turn-helix protein, lysR family K04761 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 370.0
YYD1_k127_5273829_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005957 355.0
YYD1_k127_5306987_0 Belongs to the peptidase S8 family K13276 GO:0005575,GO:0005576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007984 501.0
YYD1_k127_5306987_1 Domain of unknown function (DU1801) - - - 0.0000000000000000000000000000000000000000000000002488 178.0
YYD1_k127_5318562_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008026 354.0
YYD1_k127_5319622_0 Amidophosphoribosyltransferase K00764 - 2.4.2.14 8.168e-289 899.0
YYD1_k127_5319622_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001229 584.0
YYD1_k127_5319622_2 Protein of unknown function (DUF819) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 571.0
YYD1_k127_5319622_3 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009972 469.0
YYD1_k127_5319622_4 Protein of unknown function, DUF393 - - - 0.0000000000003315 72.0
YYD1_k127_5319622_5 Rhomboid family K09650 - 3.4.21.105 0.000000002122 60.0
YYD1_k127_5322914_0 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003794 377.0
YYD1_k127_5322914_1 Universal stress protein family - - - 0.0000000000000000000000001954 114.0
YYD1_k127_5328708_1 - K07275 - - 0.0000000000000000000000000000000000000000000000000000000003584 208.0
YYD1_k127_5328708_2 - - - - 0.0000000000000000000000000000000005434 137.0
YYD1_k127_5328708_3 Belongs to the ompA family - - - 0.0000000000000000000000000000008391 126.0
YYD1_k127_5332267_0 protein CHP03519, membrane, Bacteroidetes - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 377.0
YYD1_k127_5332267_1 - - - - 0.000000000000000000000000000000002571 139.0
YYD1_k127_5332267_2 - - - - 0.0000000000000003735 86.0
YYD1_k127_5333012_0 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206 456.0
YYD1_k127_5333012_1 nuclear chromosome segregation K02557,K18376 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002995 381.0
YYD1_k127_5333012_2 Lamin Tail Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 351.0
YYD1_k127_5340951_0 Metallo-peptidase family M12B Reprolysin-like - - - 0.000000000000000000000000000000000000000000000000000000006739 219.0
YYD1_k127_5340951_1 Group 1 truncated hemoglobin K06886 - - 0.00000000000000000000000000000004621 128.0
YYD1_k127_5340951_2 domain, Protein K15125 - - 0.0003987 44.0
YYD1_k127_5347904_0 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K01585 - 4.1.1.19 1.085e-215 678.0
YYD1_k127_5347904_1 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000004359 258.0
YYD1_k127_5347904_2 Thiol peroxidase K03564 - 1.11.1.15 0.00000000000000000000000000000000000000003134 157.0
YYD1_k127_5347904_3 Peptidase, M23 - - - 0.000000000000000000000000000002568 123.0
YYD1_k127_5352923_0 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001144 540.0
YYD1_k127_5352923_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000175 128.0
YYD1_k127_5352923_2 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.000000000000000000000009178 102.0
YYD1_k127_5358536_0 alpha-L-rhamnosidase - - - 0.0000000000000000000000000000000000000000223 174.0
YYD1_k127_5358764_0 SMART Metal-dependent phosphohydrolase, HD region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005493 316.0
YYD1_k127_5358764_1 COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA K06169 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005148 302.0
YYD1_k127_5358764_2 Pkd domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002984 289.0
YYD1_k127_5358764_3 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004276 286.0
YYD1_k127_5366933_0 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 323.0
YYD1_k127_5366933_1 candidate b-glycosidase, glycoside hydrolase family 8 protein - - - 0.0000000000000000000000005579 120.0
YYD1_k127_5366933_2 Ricin-type beta-trefoil K01197,K01227 GO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005488,GO:0005975,GO:0006464,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009100,GO:0009987,GO:0015929,GO:0016231,GO:0016787,GO:0016798,GO:0019538,GO:0030246,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901135,GO:1901564 3.2.1.35,3.2.1.96 0.00005019 55.0
YYD1_k127_5367912_0 COG3209 Rhs family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001788 592.0
YYD1_k127_5367912_1 protein of Photorhabdus and some similarities with - - - 0.000000000000000000000000000000000000000000000000000000000000000001363 236.0
YYD1_k127_5369056_0 Glycogen debranching enzyme - - - 5.728e-218 694.0
YYD1_k127_5369056_1 Glutamate formimidoyltransferase K00603,K13990 - 2.1.2.5,4.3.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001737 563.0
YYD1_k127_5369056_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004103 309.0
YYD1_k127_5369056_3 peptidase - - - 0.00000000000000003451 88.0
YYD1_k127_5369056_4 Putative beta-lactamase-inhibitor-like, PepSY-like - - - 0.0006044 48.0
YYD1_k127_5372390_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 1.105e-210 661.0
YYD1_k127_5372390_1 Cytochrome C biogenesis protein transmembrane region K09792 - - 0.000000000000000000000000000000000000000000000000000002015 199.0
YYD1_k127_5372390_2 PFAM Pregnancy-associated plasma protein-A - - - 0.00000000000000000000001422 108.0
YYD1_k127_5372390_3 FixH - - - 0.000000000000004682 79.0
YYD1_k127_5372711_0 Cation efflux family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006638 298.0
YYD1_k127_5372711_1 Domain of unknown function (DU1801) - - - 0.000000000000000000000000000000000000000000000000000000000000001829 220.0
YYD1_k127_5372711_2 Lipocalin-like domain - - - 0.00000000000000006432 85.0
YYD1_k127_5378095_0 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004456 297.0
YYD1_k127_5378095_1 Response regulator of the LytR AlgR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000000009997 229.0
YYD1_k127_5378095_2 IMG reference gene - - - 0.000000000000000000000000166 123.0
YYD1_k127_5378095_3 Chaperone of endosialidase - - - 0.00000000000003139 86.0
YYD1_k127_5378095_4 PFAM Signal transduction histidine kinase, internal region - - - 0.00000000001573 67.0
YYD1_k127_5378095_5 C-terminal domain of CHU protein family - - - 0.00000000003501 76.0
YYD1_k127_5378095_6 TIGRFAM gliding motility-associated C-terminal domain - - - 0.0001124 55.0
YYD1_k127_538052_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 1.826e-241 758.0
YYD1_k127_538052_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003152 346.0
YYD1_k127_538052_2 PFAM Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002432 314.0
YYD1_k127_538052_3 Conserved hypothetical protein (DUF2461) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 284.0
YYD1_k127_538052_4 PFAM thioesterase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000006853 211.0
YYD1_k127_538052_5 DNA alkylation repair - - - 0.00000000000000000000000000000000000000000000000000003967 195.0
YYD1_k127_538052_6 PFAM Cupin 2, conserved barrel - - - 0.00000000000000000000000000000000002024 140.0
YYD1_k127_538052_7 photosynthesis - - - 0.0000000000000000000000000000000004129 137.0
YYD1_k127_5399905_0 Oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004435 521.0
YYD1_k127_5399905_1 Converts alpha-aldose to the beta-anomer K01785 - 5.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 401.0
YYD1_k127_5399905_10 - - - - 0.00002086 53.0
YYD1_k127_5399905_11 Concanavalin A-like lectin/glucanases superfamily - - - 0.00008968 55.0
YYD1_k127_5399905_12 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0002336 46.0
YYD1_k127_5399905_2 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001156 382.0
YYD1_k127_5399905_3 WG containing repeat - - - 0.00000000000000000000000000000000000000000000000000000000000001556 230.0
YYD1_k127_5399905_4 chlorophyll binding K03640 - - 0.0000000000000000000000000000000000000000000000000000005031 214.0
YYD1_k127_5399905_5 Helix-turn-helix domain - - - 0.000000000000000000000000003562 113.0
YYD1_k127_5399905_6 Phage derived protein Gp49-like (DUF891) - - - 0.00000000000000000000000003801 111.0
YYD1_k127_5399905_7 Tetratricopeptide repeat - - - 0.00000000000000003854 94.0
YYD1_k127_5399905_8 YtxH-like protein - - - 0.0000000000002072 77.0
YYD1_k127_5399905_9 - - - - 0.0000000000003451 73.0
YYD1_k127_5400417_0 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000355 616.0
YYD1_k127_5400417_1 COG1024 Enoyl-CoA hydratase carnithine racemase K13766 - 4.2.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009934 308.0
YYD1_k127_5400417_2 Capsular polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007058 262.0
YYD1_k127_5400417_3 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 - 1.15.1.1 0.00000000000000000000000000009775 115.0
YYD1_k127_5400417_4 MaoC like domain K02618 - 1.2.1.91,3.3.2.12 0.000000000001151 68.0
YYD1_k127_5403755_0 Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP K02837 - - 8.912e-269 834.0
YYD1_k127_5403755_1 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002053 344.0
YYD1_k127_5403755_2 Pfam Peptidase family M48 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005714 325.0
YYD1_k127_5403755_3 PFAM PspC domain K03973 - - 0.00000000000000000000000000000000000000000000000000001887 197.0
YYD1_k127_5403755_4 Transcriptional regulator PadR-like family K10947 - - 0.000000000000000000000000000000000004397 141.0
YYD1_k127_5403755_5 Bax inhibitor 1 like - - - 0.0001609 47.0
YYD1_k127_5416168_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003979 280.0
YYD1_k127_5416168_1 Caulimovirus viroplasmin K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000001899 244.0
YYD1_k127_5416168_2 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000000000000000000000000000002834 237.0
YYD1_k127_5416168_3 IMG reference gene - - - 0.0000000000000000000000000000000000000006594 158.0
YYD1_k127_5416168_4 Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA K07447 - - 0.000000000000000000000000000007258 125.0
YYD1_k127_5429989_0 Transporter associated domain K03699 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001516 497.0
YYD1_k127_5429989_1 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000000000000001461 217.0
YYD1_k127_5437600_0 phosphorylase K00691 - 2.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 507.0
YYD1_k127_5437600_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000003116 206.0
YYD1_k127_5437600_2 histidine kinase dimerisation and phosphoacceptor region - - - 0.00000000000000000000000000000000000000000000000000000004188 219.0
YYD1_k127_5437600_3 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000001145 173.0
YYD1_k127_5452248_0 serine-type peptidase activity K08676 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 291.0
YYD1_k127_5452248_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 296.0
YYD1_k127_5452248_2 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
YYD1_k127_5452418_0 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004009 595.0
YYD1_k127_5452418_1 tRNA wobble adenosine to inosine editing - - - 0.0000000000000000000000000000000000000000000000000004413 185.0
YYD1_k127_5452418_2 Protein of unknown function (DUF1214) - - - 0.00000000000000000000000000000000002588 150.0
YYD1_k127_5457833_0 Metallo-peptidase family M12 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 411.0
YYD1_k127_5457833_1 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.00000000000000000000000000181 118.0
YYD1_k127_5460572_0 spore germination - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000007314 266.0
YYD1_k127_5460572_1 TonB dependent receptor K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005888 262.0
YYD1_k127_5460572_2 Protein of unknown function (DUF4197) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001379 247.0
YYD1_k127_5460572_3 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 - 5.2.1.8 0.000000000000000000000000000000000001048 143.0
YYD1_k127_5485146_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005059 507.0
YYD1_k127_5485146_1 Surface antigen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002427 384.0
YYD1_k127_5485146_2 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000001128 192.0
YYD1_k127_5485146_3 Protein of unknown function (DUF1648) - - - 0.0000000000000000000000000000001797 128.0
YYD1_k127_5485146_4 AI-2E family transporter - - - 0.000000000003941 66.0
YYD1_k127_5500090_0 ABC transporter K18890 - - 6.712e-229 722.0
YYD1_k127_5500090_1 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006567 244.0
YYD1_k127_5502014_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1343.0
YYD1_k127_5502014_1 tryptophanase activity K01667 - 4.1.99.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004473 344.0
YYD1_k127_5502014_2 ORF6N domain - - - 0.0000000000000000000000000000000000000000000000000000000001415 209.0
YYD1_k127_5502014_3 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 0.000000009729 57.0
YYD1_k127_5508461_0 in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine K15777 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004768 435.0
YYD1_k127_5508461_1 COG0457 FOG TPR repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 438.0
YYD1_k127_5508461_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000002872 199.0
YYD1_k127_5508461_3 COG0659 Sulfate permease and related K03321 - - 0.00000000000302 68.0
YYD1_k127_5521621_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009224 598.0
YYD1_k127_5521621_1 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000000000001008 182.0
YYD1_k127_5521621_2 PFAM Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000003981 174.0
YYD1_k127_5521621_3 Rhomboid family - - - 0.0000000000000000000000000000000000309 142.0
YYD1_k127_5521621_4 DALR_2 K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.00000000000000000000000004776 109.0
YYD1_k127_5525647_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000968 238.0
YYD1_k127_5525647_1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000003906 189.0
YYD1_k127_5525647_2 positive regulation of catalytic activity in other organism involved in symbiotic interaction K14861 - - 0.000000000000000000000002189 116.0
YYD1_k127_5525647_3 Belongs to the ABC transporter superfamily K05816,K10111,K10112 - 3.6.3.20 0.0000000009741 60.0
YYD1_k127_5569113_0 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005591 406.0
YYD1_k127_5569113_1 Belongs to the HesB IscA family K13628 - - 0.00000000000000000000000000000000000000000000003622 173.0
YYD1_k127_5569113_2 Methylmalonyl-CoA mutase N-terminal domain subunit K01847 - 5.4.99.2 0.000000000002178 79.0
YYD1_k127_5571089_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004023 585.0
YYD1_k127_5571089_1 involved in cell wall biogenesis - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006547 401.0
YYD1_k127_5571089_2 N-acetyl-alpha-D-glucosaminyl L-malate synthase K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003281 379.0
YYD1_k127_5571089_3 Fatty acid desaturase K00496 - 1.14.15.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001386 341.0
YYD1_k127_5571089_4 2Fe-2S iron-sulfur cluster binding domain K02613 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 322.0
YYD1_k127_5571089_5 polysaccharide deacetylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 305.0
YYD1_k127_5571089_6 Participates in the control of copper homeostasis K06201 - - 0.0000000000000000000000000000002916 130.0
YYD1_k127_5571089_7 - - - - 0.00000000001576 66.0
YYD1_k127_5571608_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005421 449.0
YYD1_k127_5571608_1 Peptidase family M50 - - - 0.000000000000000000000000000000000000000000000000000000238 207.0
YYD1_k127_5571608_2 Sec-independent protein translocase protein TatA K03116 - - 0.0000000000000000001819 89.0
YYD1_k127_5571608_3 unfolded protein binding K06142 - - 0.0000000000000000168 89.0
YYD1_k127_5571608_4 Acid phosphatase homologues - - - 0.00000000000004537 72.0
YYD1_k127_5574620_0 IMG reference gene - - - 0.00000000000000000000000000000000000000000000000000000008893 219.0
YYD1_k127_5574620_1 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.0000000000000000000000000000000000000000000000000000001197 197.0
YYD1_k127_5578204_0 Glycosyl hydrolase family 3 C-terminal domain K05349 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006179 421.0
YYD1_k127_5578204_1 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005273 281.0
YYD1_k127_5578204_2 Glycosyl hydrolase family 9 K01179 - 3.2.1.4 0.00000000000000000002993 91.0
YYD1_k127_5589036_0 PFAM Phosphatidic acid phosphatase type 2 haloperoxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002403 363.0
YYD1_k127_5589036_1 Tetratricopeptide repeat - - - 0.00009822 47.0
YYD1_k127_5595593_0 Animal haem peroxidase - - - 0.000000000000167 85.0
YYD1_k127_5595593_1 NHL repeat containing protein - - - 0.000000000073 76.0
YYD1_k127_5596265_0 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 2.232e-220 712.0
YYD1_k127_5596265_1 Glycosyl transferase, family 9 K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 330.0
YYD1_k127_5596265_2 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001815 320.0
YYD1_k127_5596265_3 4-amino-4-deoxy-L-arabinose transferase activity - - - 0.000000002612 70.0
YYD1_k127_5600863_0 peptidylprolyl isomerase K03771 - 5.2.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006738 436.0
YYD1_k127_5600863_1 Doxx family - - - 0.000000001321 71.0
YYD1_k127_5600863_2 Belongs to the ompA family - - - 0.00000000401 70.0
YYD1_k127_5600942_0 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 570.0
YYD1_k127_5600942_1 FIST N domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007818 511.0
YYD1_k127_5600942_2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 477.0
YYD1_k127_5600942_3 FIST_C - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008262 454.0
YYD1_k127_5600942_4 FIST N domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001178 346.0
YYD1_k127_5600942_5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000005791 175.0
YYD1_k127_5625157_0 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001343 295.0
YYD1_k127_5625157_1 - - - - 0.00000000000000000004139 96.0
YYD1_k127_5625157_2 Lytic polysaccharide mono-oxygenase, cellulose-degrading - - - 0.000007682 55.0
YYD1_k127_5628861_0 oxidoreductase activity - - - 0.0000000000000000000000000000000000000000000000000000001721 224.0
YYD1_k127_5628861_1 chitinase - - - 0.00000000000003103 88.0
YYD1_k127_5631158_0 - - - - 0.000000000000000000000000000000000000005524 149.0
YYD1_k127_5631158_1 - - - - 0.0000000000000000000000000000004913 138.0
YYD1_k127_5631158_2 FR47-like protein - - - 0.00005684 46.0
YYD1_k127_5649627_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 2.88e-227 717.0
YYD1_k127_5649627_1 Protein of unknown function (DUF4255) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001126 236.0
YYD1_k127_5649627_2 - - - - 0.0000000000000000000000002827 113.0
YYD1_k127_5658545_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003653 564.0
YYD1_k127_5658545_1 COGs COG2192 carbamoyl transferase NodU family K00612 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001599 529.0
YYD1_k127_5658545_2 COGs COG0463 Glycosyltransferase involved in cell wall biogenesis K13002 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 323.0
YYD1_k127_5658545_3 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.0003189 45.0
YYD1_k127_5671295_0 COG3209 Rhs family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000004751 278.0
YYD1_k127_5671295_1 LVIVD repeat - - - 0.000000000000000000000000000000000000000256 168.0
YYD1_k127_5676461_0 Signal transduction histidine kinase, LytS - - - 0.000000000000000000000000000000000000000000000000000000000003002 235.0
YYD1_k127_5676461_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000003017 208.0
YYD1_k127_5676461_2 Signal transduction histidine kinase, LytS - - - 0.00000000000000000000000000000000000000000000000000001283 216.0
YYD1_k127_5676461_3 Histidine kinase - - - 0.00000008406 56.0
YYD1_k127_5678387_0 Alanine dehydrogenase/PNT, C-terminal domain K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009003 589.0
YYD1_k127_5678387_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.000000000000000000000000000000000000000000000000000000000000000003705 230.0
YYD1_k127_5678387_2 COG NOG19094 non supervised orthologous group - - - 0.0000000000000000000000000002254 117.0
YYD1_k127_5678387_3 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) K15460 GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016430,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.223 0.00000000000000000000000004965 117.0
YYD1_k127_5678387_4 - - - - 0.0000000000002429 82.0
YYD1_k127_5678387_5 Belongs to the leguminous lectin family - - - 0.000002517 59.0
YYD1_k127_5682109_0 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005568 530.0
YYD1_k127_5682109_1 COGs COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001216 404.0
YYD1_k127_5682109_2 Anthranilate synthase K01658 - 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000002771 222.0
YYD1_k127_5682109_3 PFAM Penicillin binding protein transpeptidase domain K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000007147 207.0
YYD1_k127_5682109_4 Deoxyhypusine synthase K00809 - 2.5.1.46 0.000000000000000000000000000000000000000000006849 162.0
YYD1_k127_5682109_5 Belongs to the bacterial ribosomal protein bS21 family K02970 - - 0.00000000000000008308 82.0
YYD1_k127_5687168_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004188 431.0
YYD1_k127_5687168_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005362 411.0
YYD1_k127_5687168_10 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000000001031 181.0
YYD1_k127_5687168_11 binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000817 175.0
YYD1_k127_5687168_12 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000001815 164.0
YYD1_k127_5687168_13 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000001068 151.0
YYD1_k127_5687168_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000006014 149.0
YYD1_k127_5687168_15 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000002828 137.0
YYD1_k127_5687168_16 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000003241 137.0
YYD1_k127_5687168_17 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000000000000000000009551 126.0
YYD1_k127_5687168_18 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000005811 124.0
YYD1_k127_5687168_19 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000001055 104.0
YYD1_k127_5687168_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005696 403.0
YYD1_k127_5687168_20 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000007035 78.0
YYD1_k127_5687168_3 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 299.0
YYD1_k127_5687168_4 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004431 276.0
YYD1_k127_5687168_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005948 266.0
YYD1_k127_5687168_6 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000001263 254.0
YYD1_k127_5687168_7 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000001224 242.0
YYD1_k127_5687168_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000004295 217.0
YYD1_k127_5687168_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000001521 214.0
YYD1_k127_5690766_0 Ribose-phosphate pyrophosphokinase K00948 - 2.7.6.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 485.0
YYD1_k127_5690766_1 prohibitin homologues K07192 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003042 335.0
YYD1_k127_5690766_2 amidohydrolase K13566 - 3.5.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000244 269.0
YYD1_k127_5690766_3 This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance K02897 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000004839 200.0
YYD1_k127_5690766_4 serine protease - - - 0.000000000000000000000000000001409 129.0
YYD1_k127_5690766_5 COGs COG0791 Cell wall-associated hydrolase (invasion-associated protein) - - - 0.000000000000000000000000000175 123.0
YYD1_k127_5690766_6 SET domain K07117 - - 0.000000000000000000000001447 107.0
YYD1_k127_5690766_7 EamA-like transporter family - - - 0.00000000000000000000282 98.0
YYD1_k127_57080_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0 1099.0
YYD1_k127_57080_1 Bacterial PH domain K08981 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001467 264.0
YYD1_k127_57080_2 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.0000000000000000000000000000000003563 132.0
YYD1_k127_57080_3 Bacterial PH domain K09167 - - 0.000000000000000000000001123 110.0
YYD1_k127_57080_4 - - - - 0.00000000000005109 78.0
YYD1_k127_57080_5 cellulase activity - - - 0.000002566 60.0
YYD1_k127_57080_6 DNA helicase K03657 - 3.6.4.12 0.0007747 43.0
YYD1_k127_5729222_0 Sulfatase K01130 - 3.1.6.1 0.0 1252.0
YYD1_k127_5729222_1 Activator of Hsp90 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000004894 239.0
YYD1_k127_5729222_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000001702 243.0
YYD1_k127_5729222_4 Glycine-zipper domain - - - 0.000000000000000000000000000000000001016 145.0
YYD1_k127_5729222_5 Cytochrome c K17222 - - 0.0000000000000000000000000000000001836 137.0
YYD1_k127_5755386_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281,K00283 - 1.4.4.2 1.358e-203 640.0
YYD1_k127_5755386_1 Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose K03274 - 5.1.3.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 390.0
YYD1_k127_575562_0 Putative beta-barrel porin-2, OmpL-like. bbp2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 315.0
YYD1_k127_575562_1 FG-GAP repeat - - - 0.0005216 51.0
YYD1_k127_576175_0 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001093 495.0
YYD1_k127_576175_1 Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) K07094 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009626 310.0
YYD1_k127_576175_2 Belongs to the pseudouridine synthase RsuA family K06178 - 5.4.99.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 294.0
YYD1_k127_5770809_0 COGs COG1629 Outer membrane receptor protein mostly Fe transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008981 271.0
YYD1_k127_5787415_0 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 4.131e-250 790.0
YYD1_k127_5787415_1 apolipoprotein N-acyltransferase K03820 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000423 271.0
YYD1_k127_5793220_0 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K01420 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000009766 285.0
YYD1_k127_5793220_1 Belongs to the Dps family K04047 - - 0.0000000000000000000000000000000000000000000000000000000000000002676 223.0
YYD1_k127_5793220_2 Thioredoxin K03671 - - 0.00000000000000000000000000000000001041 138.0
YYD1_k127_5793220_3 COGs COG0607 Rhodanese-related sulfurtransferase - - - 0.00000000000000000000000000002926 121.0
YYD1_k127_5793220_4 - - - - 0.0000000000000003526 80.0
YYD1_k127_5793220_5 Protein of unknown function (DUF2892) - - - 0.0000000000009939 70.0
YYD1_k127_5794019_0 ATPase, P-type, K Mg Cd Cu Zn Na Ca Na H-transporter K01533,K17686 - 3.6.3.4,3.6.3.54 3.196e-312 968.0
YYD1_k127_5794314_0 Dipeptidyl peptidase IV (DPP IV) N-terminal region K01278 - 3.4.14.5 6.972e-296 925.0
YYD1_k127_5801982_0 FeS assembly protein SufB K07033,K09014 GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009536,GO:0009842,GO:0009987,GO:0016043,GO:0016226,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0071840 - 5.218e-246 766.0
YYD1_k127_5801982_1 Acetyl-coenzyme A synthetase N-terminus K01907 - 6.2.1.16 8.839e-201 637.0
YYD1_k127_5801982_2 PFAM Carbamoyl-phosphate synthase L chain, ATP binding K01961,K01965 - 6.3.4.14,6.4.1.2,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 611.0
YYD1_k127_5801982_3 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001068 563.0
YYD1_k127_5801982_4 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005293 528.0
YYD1_k127_5801982_5 FeS assembly ATPase SufC K09013 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006342 355.0
YYD1_k127_5801982_6 TIGRFAM FeS assembly protein SufD K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009148 262.0
YYD1_k127_5801982_7 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000000000000000000000007743 239.0
YYD1_k127_5801982_8 transcriptional regulator - - - 0.000000000000000000000000000000000000000000000002388 177.0
YYD1_k127_5801982_9 Fe-S metabolism associated domain protein K02426 - - 0.0000000000000000000000000000000000000000000001108 177.0
YYD1_k127_5808454_0 RNA-binding PUA-like domain of methyltransferase RsmF - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 316.0
YYD1_k127_5808454_1 Thymidylate kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000216 245.0
YYD1_k127_5808454_2 TIGRFAM 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 - 2.7.6.3 0.00000000000000000000000000000000000000007583 156.0
YYD1_k127_5808454_3 Belongs to the UbiD family K03182 - 4.1.1.98 0.00000000000000000000000002805 109.0
YYD1_k127_5810611_0 PFAM NADH ubiquinone oxidoreductase, subunit G, iron-sulphur binding K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007508 516.0
YYD1_k127_5810611_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172 479.0
YYD1_k127_5810611_2 COG1009 NADH ubiquinone oxidoreductase subunit 5 (chain L) Multisubunit Na H antiporter MnhA subunit K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008897 473.0
YYD1_k127_5810611_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335,K18331 - 1.12.1.3,1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005533 355.0
YYD1_k127_5810611_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000004281 260.0
YYD1_k127_5810611_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.00000000000000000000000000000000000000000001137 167.0
YYD1_k127_5810611_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000000000000007631 139.0
YYD1_k127_5828298_0 PFAM Peptidase family S41 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000524 276.0
YYD1_k127_5842700_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003028 256.0
YYD1_k127_5842700_1 COG1705 Muramidase (flagellum-specific) - - - 0.000000000000000000000000000000000000000000000000000000000000002955 226.0
YYD1_k127_5844997_0 long-chain fatty acid transport protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 392.0
YYD1_k127_5844997_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 327.0
YYD1_k127_5844997_2 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000001342 210.0
YYD1_k127_5844997_3 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family K02503 - - 0.00000000000000000000000000000000000000000006163 164.0
YYD1_k127_5849209_0 Peptidase S9, prolyl oligopeptidase, catalytic domain K01354 - 3.4.21.83 1.956e-223 698.0
YYD1_k127_5849209_1 PFAM Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 356.0
YYD1_k127_5850159_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 505.0
YYD1_k127_5850159_1 BlaR1 peptidase M56 - - - 0.0000000000000000000000000000000000000000000000000000000000000000003104 256.0
YYD1_k127_5850159_2 Penicillinase repressor - - - 0.00000000000000000000000000000000000002331 145.0
YYD1_k127_5850522_0 Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) K18979 - 1.17.99.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000213 404.0
YYD1_k127_5850522_1 agmatine deiminase activity K10536 - 3.5.3.12 0.00000000000001111 79.0
YYD1_k127_5850522_2 Aspartyl protease - - - 0.000000000002869 72.0
YYD1_k127_5850522_3 Zinc metalloprotease (Elastase) - - - 0.0006502 52.0
YYD1_k127_5857998_0 PFAM Family of - - - 0.00000000000000000000005676 115.0
YYD1_k127_5865464_0 Histidine ammonia-lyase K01745 - 4.3.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 479.0
YYD1_k127_5865464_1 outer membrane chaperone Skp (OmpH) K06142 - - 0.00000000000000000000000000000000000000000000000000000008148 200.0
YYD1_k127_5865464_2 PFAM outer membrane chaperone Skp (OmpH) K06142 - - 0.000000000000000000000000000001845 126.0
YYD1_k127_5865464_3 Psort location Cytoplasmic, score - - - 0.000000000000000000000000001837 123.0
YYD1_k127_5867424_0 with chaperone activity ATP-binding subunit K03696 - - 0.0 1050.0
YYD1_k127_5867424_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 564.0
YYD1_k127_5867424_10 Domain of unknown function (DUF4293) - - - 0.00000000000000007723 85.0
YYD1_k127_5867424_11 COG1961 Site-specific recombinases, DNA invertase Pin homologs - - - 0.00003745 46.0
YYD1_k127_5867424_2 ABC-type antimicrobial peptide transport system, permease component K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 440.0
YYD1_k127_5867424_3 OstA-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002587 415.0
YYD1_k127_5867424_4 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002813 271.0
YYD1_k127_5867424_5 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000000000000001878 240.0
YYD1_k127_5867424_6 TatD related DNase K03424 - - 0.000000000000000000000000000000000000000000000001073 178.0
YYD1_k127_5867424_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000000006624 159.0
YYD1_k127_5867424_8 Protein of unknown function (DUF2795) - - - 0.000000000000000000000000000000000000003445 146.0
YYD1_k127_5867424_9 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000009948 92.0
YYD1_k127_5872395_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 451.0
YYD1_k127_5872395_1 Two component transcriptional regulator, LytTR family K02477 - - 0.00000000000000000000000000000000000000000000000000000000000001388 223.0
YYD1_k127_5872395_2 Hep Hag repeat protein - - - 0.0001663 53.0
YYD1_k127_588921_0 Dienelactone hydrolase family - - - 5.056e-209 655.0
YYD1_k127_588921_1 Rhomboid family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005393 248.0
YYD1_k127_588921_2 Belongs to the GbsR family - - - 0.000000000000000000000000000000000000000001525 161.0
YYD1_k127_588921_3 Gscfa family - - - 0.000000000004183 69.0
YYD1_k127_5889362_0 Pyruvate ferredoxin/flavodoxin oxidoreductase K00174 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 490.0
YYD1_k127_5889362_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002419 417.0
YYD1_k127_5889362_2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.000000000000000000000006379 103.0
YYD1_k127_5891238_0 Oxygen tolerance - - - 0.00000000000000000000000000000000000007078 160.0
YYD1_k127_5891238_1 TPR repeat-containing protein - - - 0.00000000000003175 86.0
YYD1_k127_5893468_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006605 443.0
YYD1_k127_5893468_1 Glycosyltransferase, group 2 family protein K07011 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001268 394.0
YYD1_k127_5893468_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009729 378.0
YYD1_k127_5893468_3 OmpA MotB domain protein K03286 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 383.0
YYD1_k127_5893468_4 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000007059 242.0
YYD1_k127_5893468_5 Belongs to the arginase family K01479 - 3.5.3.8 0.0000000000000000000000000000000000000003221 162.0
YYD1_k127_5906451_0 TonB-dependent Receptor Plug K02014 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007425 282.0
YYD1_k127_5915001_0 Outer membrane protein beta-barrel family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007958 490.0
YYD1_k127_5915001_1 Transporter associated domain K03699 - - 0.00000000000000000000000000000000000000000000000000002571 193.0
YYD1_k127_5915001_2 A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD K03581 - 3.1.11.5 0.0000000001904 65.0
YYD1_k127_5922537_0 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002522 595.0
YYD1_k127_5922537_1 CotH kinase protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008237 509.0
YYD1_k127_5922537_2 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006282 437.0
YYD1_k127_5922537_3 PFAM MgsA AAA ATPase C terminal K07478 - - 0.00000000000000000381 84.0
YYD1_k127_5922537_4 PFAM FG-GAP repeat - - - 0.0001491 49.0
YYD1_k127_5931370_0 Psort location OuterMembrane, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002023 299.0
YYD1_k127_5931370_1 Redoxin - - - 0.000000000000000000000000000000000000000000000000000003089 208.0
YYD1_k127_5931370_2 - - - - 0.0000000000000000000000000000000000000000000000002128 181.0
YYD1_k127_5931370_3 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000008954 132.0
YYD1_k127_5931370_4 C-terminal domain of CHU protein family - - - 0.0000000000000000000000002718 117.0
YYD1_k127_5931370_5 sigma-70 region 2 domain protein K03088 - - 0.000000000000000764 81.0
YYD1_k127_5944225_0 Domain of unknown function (DUF4331) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002494 517.0
YYD1_k127_5959337_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001162 287.0
YYD1_k127_5959337_1 Protein of unknown function (DUF3575) - - - 0.000000000000000000000000000000000000000000000000005455 192.0
YYD1_k127_5963742_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.00000000000000000000000000000000002714 152.0
YYD1_k127_5963811_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006033 261.0
YYD1_k127_5963811_1 Chaperone of endosialidase - - - 0.000000000000000000000000001652 130.0
YYD1_k127_5963811_2 Chaperone of endosialidase - - - 0.0000000000000004321 93.0
YYD1_k127_5968253_0 TonB dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002188 357.0
YYD1_k127_5968253_1 Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) K00275 - 1.4.3.5 0.0000000000000000000000000000000000000000000000000000005538 198.0
YYD1_k127_5968253_2 - - - - 0.000000000000000000000000000000000000000000004897 170.0
YYD1_k127_596991_0 Participates in initiation and elongation during chromosome replication - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008773 621.0
YYD1_k127_596991_1 Dystroglycan-type cadherin-like domains. K07004 - - 0.00000000001198 75.0
YYD1_k127_597923_0 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005939 338.0
YYD1_k127_597923_1 YjbR - - - 0.00000000000000000000000000000000000000001577 155.0
YYD1_k127_597923_2 Oligopeptide/dipeptide transporter, C-terminal region K02031,K02032 - - 0.0000000000000000000000000000000000000001733 157.0
YYD1_k127_597923_3 Sterol-binding domain protein - - - 0.00000000000000000000000007695 109.0
YYD1_k127_597923_4 PFAM FAD dependent oxidoreductase - - - 0.0000000000000000001273 97.0
YYD1_k127_5985302_0 OmpA MotB domain protein - - - 0.000000000000000000000000000000000000000000007548 170.0
YYD1_k127_5985302_1 nicotinamide mononucleotide transporter K03811 - - 0.00000000000000000000000003183 115.0
YYD1_k127_5985302_2 amino acid K03294 GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 0.0000002775 53.0
YYD1_k127_598719_0 Belongs to the GPAT DAPAT family K00631 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005417 488.0
YYD1_k127_598719_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 433.0
YYD1_k127_598719_2 Rhodanese Homology Domain K06917 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001946 314.0
YYD1_k127_598719_3 Domain of unknown function (DUF4918) - - - 0.0000000000000000000000000000000000000000000000000000000004836 207.0
YYD1_k127_598719_4 Exonuclease - - - 0.000000000000000000000000000000000000000000000009319 177.0
YYD1_k127_598719_5 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000005996 168.0
YYD1_k127_5996317_1 COG3209 Rhs family protein - - - 0.0000000000000000249 94.0
YYD1_k127_5996317_2 GCN5-related N-acetyl-transferase K06975 - - 0.00000000000009435 75.0
YYD1_k127_5996317_3 Belongs to the peptidase S8 family K01190,K07004,K13277 - 3.2.1.23 0.00004721 48.0
YYD1_k127_600241_0 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009313 449.0
YYD1_k127_600241_1 phosphohydrolase K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001048 388.0
YYD1_k127_6003015_0 Enoyl-(Acyl carrier protein) reductase K13775 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 357.0
YYD1_k127_6003015_1 esterase of the alpha-beta hydrolase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000273 295.0
YYD1_k127_6003015_2 Gaf domain - - - 0.00000000000000000000000000000000000000000000000000000000002884 222.0
YYD1_k127_6003015_3 energy transducer activity K03832 - - 0.000000000000000000000002726 108.0
YYD1_k127_6008210_0 HYR domain - - - 0.000000000000000000000000000000000000000000000000003874 210.0
YYD1_k127_6008210_1 arginyl-trna synthetase - - - 0.0000000000000000003522 104.0
YYD1_k127_6008210_2 Protein conserved in bacteria - - - 0.00000000000000002875 98.0
YYD1_k127_6015677_0 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000000000000000000000000000000000000004214 220.0
YYD1_k127_6015677_1 rna methyltransferase K03437 - - 0.00000000000000000000000000000004575 132.0
YYD1_k127_6015830_0 DNA mismatch repair protein MutT K07098 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005116 465.0
YYD1_k127_6015830_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000000000001836 203.0
YYD1_k127_6015830_2 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000000004677 166.0
YYD1_k127_6015830_3 PKD domain containing protein - - - 0.000000000000000000000000000000005545 130.0
YYD1_k127_6022652_0 OmpA MotB domain protein K02557 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001476 380.0
YYD1_k127_6022652_1 membrane-bound metal-dependent K07038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003988 276.0
YYD1_k127_6022652_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000005328 180.0
YYD1_k127_6022652_3 - - - - 0.00000000000000000001465 96.0
YYD1_k127_6047388_0 Sortilin, neurotensin receptor 3, - - - 2.385e-256 810.0
YYD1_k127_6047388_1 PKD domain containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002301 602.0
YYD1_k127_6047388_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005204 361.0
YYD1_k127_6047388_3 Belongs to the SUA5 family K07566 - 2.7.7.87 0.000000000000000000000000000000000000000000000001881 180.0
YYD1_k127_6047388_4 Efflux pump membrane transporter K03296,K18138 - - 0.00000000000000000000000000000000006317 154.0
YYD1_k127_6062713_0 PFAM sulfatase - - - 1.818e-218 687.0
YYD1_k127_6062713_1 C-terminal domain of CHU protein family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009583 381.0
YYD1_k127_6062713_2 glyoxalase - - - 0.000000000000000000000000000000000000000000000000000000003993 201.0
YYD1_k127_6062713_3 PFAM Outer membrane protein, OmpA MotB, C-terminal - - - 0.000000000000000000000000000001734 141.0
YYD1_k127_6075272_0 Conserved repeat domain - - - 0.000000000000000000000000000000000000000000000007345 189.0
YYD1_k127_6075272_1 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor - - - 0.0000000000000000000000000000000000000000000008117 187.0
YYD1_k127_6087738_0 - catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 0.000000000000000000000000000000000000000000000000000002547 198.0
YYD1_k127_6087738_1 Penicillinase repressor - - - 0.0000000000000000000000000000000000000002708 153.0
YYD1_k127_6087738_2 - - - - 0.00000000000000000000000000000000002246 138.0
YYD1_k127_6087738_3 Domain of unknown function (DUF4249) - - - 0.0000000000000000001813 99.0
YYD1_k127_6087738_4 PFAM TonB-dependent Receptor Plug - - - 0.00004872 46.0
YYD1_k127_6087738_5 PFAM BlaR1 peptidase M56 - - - 0.0009645 43.0
YYD1_k127_6092353_0 Phosphate-selective porin O and P - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001326 445.0
YYD1_k127_6092353_1 Formate nitrite K02598,K06212 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006133 366.0
YYD1_k127_6092353_2 epimerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000133 283.0
YYD1_k127_6092353_3 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000002423 183.0
YYD1_k127_6092822_0 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 434.0
YYD1_k127_6092822_1 COGs COG0659 Sulfate permease and related transporter (MFS superfamily) K01673,K03321 - 4.2.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 433.0
YYD1_k127_6092822_2 Cation transporter/ATPase, N-terminus K01537 - 3.6.3.8 0.00000000000000000000000000000021 124.0
YYD1_k127_6096363_0 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006939 336.0
YYD1_k127_6096363_1 C-terminal domain of CHU protein family - - - 0.0000000000002184 83.0
YYD1_k127_6096363_2 AraC-like ligand binding domain - - - 0.00000007512 55.0
YYD1_k127_6096363_3 Domain of unknown function DUF11 - - - 0.0001472 51.0
YYD1_k127_6096363_4 - - - - 0.0001651 44.0
YYD1_k127_6102667_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000002882 303.0
YYD1_k127_6102667_1 Fungalysin metallopeptidase (M36) - - - 0.00000000000000000000000000000001028 137.0
YYD1_k127_6119728_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007124 518.0
YYD1_k127_6119728_1 Response regulator of the LytR AlgR family K02477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005408 398.0
YYD1_k127_6119728_2 YeeE YedE family K07112 - - 0.000000000000000000000000000000000000000000000000000000000000002091 223.0
YYD1_k127_6119728_3 Sulphur transport K07112 - - 0.0000000000000000000000000000000000000000000008372 173.0
YYD1_k127_6122105_0 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 349.0
YYD1_k127_6122105_2 (ABC) transporter K06147 - - 0.0000000000000000001151 100.0
YYD1_k127_6122105_3 - - - - 0.000000000000000004824 86.0
YYD1_k127_6122105_4 Thioredoxin K01829 - 5.3.4.1 0.00000000000000003421 87.0
YYD1_k127_6122105_5 - - - - 0.00009016 44.0
YYD1_k127_6127334_0 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell - - - 0.00000000000000000000000000000000008934 147.0
YYD1_k127_6127334_1 heme binding - - - 0.00000000000000000000000000002268 128.0
YYD1_k127_6127334_2 Beta-lactamase - - - 0.000000000000007433 81.0
YYD1_k127_6129094_0 regulation of response to stimulus K01126,K21449 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 449.0
YYD1_k127_6129094_1 Putative metal-binding motif K02674 - - 0.00000002612 68.0
YYD1_k127_6143312_0 TIGRFAM Por secretion system C-terminal sorting domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001975 274.0
YYD1_k127_6143312_1 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000002464 137.0
YYD1_k127_6143312_2 regulator of chromosome condensation, RCC1 - - - 0.00000000000000000000000000004292 136.0
YYD1_k127_6143312_3 COG3209 Rhs family protein K01337 - 3.4.21.50 0.000000000000000008711 99.0
YYD1_k127_6143312_4 translation initiation factor activity K06996 - - 0.000002832 49.0
YYD1_k127_6146531_0 Amidohydrolase family - - - 1.889e-200 634.0
YYD1_k127_6146531_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002398 345.0
YYD1_k127_6146531_2 Glycine cleavage H-protein K02437 - - 0.0000000000000000000000000000000000000000000000147 174.0
YYD1_k127_6148864_0 PFAM Methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005095 425.0
YYD1_k127_6148864_1 COG3209 Rhs family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003079 332.0
YYD1_k127_6148864_2 Dihydrodipicolinate reductase, N-terminus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 304.0
YYD1_k127_6148864_3 domain, Protein - - - 0.00000000000000000000000000000000000001393 160.0
YYD1_k127_6148864_4 Cache_2 - - - 0.000000000000000000000296 100.0
YYD1_k127_6148864_5 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0016787,GO:0016817,GO:0016818,GO:0050896 3.6.1.7 0.0000000000000000002793 90.0
YYD1_k127_6148864_6 CarboxypepD_reg-like domain - - - 0.0000000002323 71.0
YYD1_k127_6148864_7 Chaperone of endosialidase - - - 0.0001071 54.0
YYD1_k127_6151171_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 9.499e-248 772.0
YYD1_k127_6151171_1 peptidase activity, acting on L-amino acid peptides K05996 - 3.4.17.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 522.0
YYD1_k127_6151171_2 Transporter associated domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001813 256.0
YYD1_k127_6151171_3 Single-stranded DNA-binding protein K03111 - - 0.0000000000000000000000000000000000000000000000004773 179.0
YYD1_k127_6151171_4 ribonuclease BN K07058 - - 0.0000000000000000000000000000000000001872 146.0
YYD1_k127_6151171_5 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000000000000000005654 138.0
YYD1_k127_6151171_6 Uncharacterized protein conserved in bacteria (DUF2147) - - - 0.00000000000000000000000000000003021 130.0
YYD1_k127_6151171_7 Signal peptide protein - - - 0.000000000000000000000000000001605 124.0
YYD1_k127_6151344_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 6.24e-213 671.0
YYD1_k127_6151344_1 mevalonate kinase activity K00869,K00938 - 2.7.1.36,2.7.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003711 292.0
YYD1_k127_6151344_2 Psort location Cytoplasmic, score 8.96 K02619 - 4.1.3.38 0.00000000009533 64.0
YYD1_k127_6175942_0 COGs COG0659 Sulfate permease and related transporter (MFS superfamily) K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 381.0
YYD1_k127_6175942_1 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001873 357.0
YYD1_k127_6175942_2 Reversible hydration of carbon dioxide - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003734 321.0
YYD1_k127_6175942_3 Belongs to the UPF0403 family - - - 0.0000000000000000000000000000000000000000000000000000000000000005354 221.0
YYD1_k127_6175942_4 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000000000000000000000000000000000000000000000005816 210.0
YYD1_k127_6175942_5 CHAD domain - - - 0.00000000000000000000000000000000008654 145.0
YYD1_k127_6191878_0 Glycerol-3-phosphate dehydrogenase K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 379.0
YYD1_k127_6191878_1 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002717 366.0
YYD1_k127_6191878_2 - - - - 0.00000000000000000000000000000000003341 140.0
YYD1_k127_6191878_3 Phage shock protein A - - - 0.0000000000000000000002995 98.0
YYD1_k127_619486_0 Conserved repeat domain - - - 2.206e-230 752.0
YYD1_k127_619486_1 Necessary for normal cell division and for the maintenance of normal septation K03978 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000008247 213.0
YYD1_k127_6205572_0 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs K12573,K12585 - - 3.044e-214 690.0
YYD1_k127_6205572_1 Methyltransferase FkbM domain - - - 0.0000000000000000000000000000000000000000000000000000000000004342 218.0
YYD1_k127_6205572_2 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000965 146.0
YYD1_k127_6206873_0 COG1807 4-amino-4-deoxy-L-arabinose transferase and related K07264 - 2.4.2.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001425 374.0
YYD1_k127_6206873_1 Outer membrane protein beta-barrel domain - - - 0.000001468 58.0
YYD1_k127_6210_0 Protein of unknown function (DUF1254) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 609.0
YYD1_k127_6210_1 Transposase (IS116 IS110 IS902 family) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001184 340.0
YYD1_k127_6210711_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 5.765e-268 847.0
YYD1_k127_6210711_1 Aminotransferase class-V K00817 - 2.6.1.9 0.000000000074 65.0
YYD1_k127_6213363_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004811 513.0
YYD1_k127_6213363_1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002022 487.0
YYD1_k127_6213363_2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K01921 - 6.3.2.4 0.00000000000000000000000000000005234 125.0
YYD1_k127_6231005_0 DNA polymerase X family - - - 5.236e-217 688.0
YYD1_k127_6231005_1 Erythromycin esterase K06880 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005425 571.0
YYD1_k127_6231005_10 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000000000000000000000000000000008004 231.0
YYD1_k127_6231005_11 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000009341 223.0
YYD1_k127_6231005_12 COGs COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase) - - - 0.0000000000000000000000000000000000000000000000005576 177.0
YYD1_k127_6231005_13 COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) K05770 - - 0.0000000000000000000000000000000000000000000368 165.0
YYD1_k127_6231005_2 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006044 509.0
YYD1_k127_6231005_3 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003685 424.0
YYD1_k127_6231005_4 PBP superfamily domain K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002871 411.0
YYD1_k127_6231005_5 permease protein PstA K02038 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002292 401.0
YYD1_k127_6231005_6 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 393.0
YYD1_k127_6231005_7 Alpha/beta hydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005831 353.0
YYD1_k127_6231005_8 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 342.0
YYD1_k127_6231005_9 Plays a role in the regulation of phosphate uptake K02039 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001309 280.0
YYD1_k127_6238987_0 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009418 474.0
YYD1_k127_6238987_1 Asparagine synthase K01953 - 6.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 363.0
YYD1_k127_6249864_0 Domain of unknown function (DUF4397) - - - 4.41e-220 706.0
YYD1_k127_6254201_0 Fibrobacter succinogenes major domain (Fib_succ_major) - - - 0.0000000000001773 74.0
YYD1_k127_6254201_1 Outer membrane receptor - - - 0.0000000000003067 76.0
YYD1_k127_6254201_2 Endonuclease I - - - 0.00002976 56.0
YYD1_k127_6260886_0 SPTR CHU large protein - - - 0.0000000000000000000000000000000001273 154.0
YYD1_k127_6260886_1 Concanavalin A-like lectin/glucanases superfamily - - - 0.000000000000000000000000000952 132.0
YYD1_k127_6260886_2 COG2931, RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000005838 106.0
YYD1_k127_6260886_3 - - - - 0.000000000000004334 87.0
YYD1_k127_6260886_4 amino acid activation for nonribosomal peptide biosynthetic process - - - 0.0000000001078 76.0
YYD1_k127_626266_0 Zinc-uptake complex component A periplasmic K09815,K11707 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004684 346.0
YYD1_k127_626266_1 ATPases associated with a variety of cellular activities K11710,K19973 - 3.6.3.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037 320.0
YYD1_k127_626266_2 acyl-CoA dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002598 299.0
YYD1_k127_626266_3 Iron dependent repressor, metal binding and dimerisation domain K03709 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002885 244.0
YYD1_k127_626266_4 Domain of unknown function (DUF4286) - - - 0.00000000000000000000000004027 111.0
YYD1_k127_6262944_0 uracil phosphoribosyltransferase K00761 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000002628 262.0
YYD1_k127_6262944_1 - - - - 0.000000000000000000000000000000000000000000000000000003658 201.0
YYD1_k127_6262944_2 TIGRFAM TIGR02757 family protein - - - 0.000000000000002608 76.0
YYD1_k127_6263840_0 PFAM Glucose Sorbosone dehydrogenase K21430 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001604 607.0
YYD1_k127_6263840_1 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000819 306.0
YYD1_k127_6263840_2 Belongs to the peptidase S8 family - - - 0.00004667 52.0
YYD1_k127_627116_0 Serine protease, subtilase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007516 336.0
YYD1_k127_627116_1 Psort location Cytoplasmic, score 8.96 - - - 0.0000000000000000000000000000000000000000003643 162.0
YYD1_k127_627116_2 structural constituent of ribosome K02902 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000001861 58.0
YYD1_k127_627116_3 - - - - 0.00004872 46.0
YYD1_k127_6274039_0 Belongs to the peptidase M16 family K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001395 623.0
YYD1_k127_6281291_0 Cystathionine beta-synthase K01697 - 4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 317.0
YYD1_k127_6281291_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000000000006628 228.0
YYD1_k127_6281291_2 PFAM Peptidoglycan-binding lysin domain - - - 0.0000000000000000000000001997 116.0
YYD1_k127_6287660_0 COGs COG2270 Permease of the major facilitator superfamily K06902 - - 0.00000000000000000000000000000000000000000000000000000000000005432 218.0
YYD1_k127_6287660_1 protein secretion - - - 0.0000000000000000000000000000000000000000000000006791 195.0
YYD1_k127_6293973_0 Repeats in polycystic kidney disease 1 (PKD1) and other proteins - - - 1.894e-194 649.0
YYD1_k127_630446_0 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 GO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003456 469.0
YYD1_k127_630446_1 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003089 420.0
YYD1_k127_630446_2 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006136 292.0
YYD1_k127_630446_3 Protein of unknown function (DUF3810) - - - 0.00000000000000000000000000000000000000000000000000000000004498 219.0
YYD1_k127_630446_4 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000001266 196.0
YYD1_k127_630446_5 DNA RNA non-specific endonuclease K01173 - - 0.00000000000000000000000000000000000000000000000000353 194.0
YYD1_k127_630446_6 Belongs to the thioredoxin family K03671 - - 0.0000000000000000000000000000000000000000000001146 170.0
YYD1_k127_630446_7 Polyphosphate nucleotide phosphotransferase, PPK2 family - - - 0.000000000000000000000000000000000000000000001113 168.0
YYD1_k127_630446_8 Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11783 - 3.2.2.26 0.000000000000000000000000000000002471 138.0
YYD1_k127_630446_9 photosystem II stabilization - - - 0.00000000000000000000002353 110.0
YYD1_k127_6307325_0 PFAM Uncharacterised protein family UPF0118 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018 385.0
YYD1_k127_6307325_1 guanyl-nucleotide exchange factor activity K20276 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 323.0
YYD1_k127_6307325_2 AraC family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002049 255.0
YYD1_k127_6307325_3 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000000000000000000000000000000002697 184.0
YYD1_k127_6307325_4 - - - - 0.0000000000000000000000008488 108.0
YYD1_k127_6307325_5 - - - - 0.00000000000000001037 85.0
YYD1_k127_6307325_6 - - - - 0.00000000000000002158 87.0
YYD1_k127_6307325_7 YtxH-like protein - - - 0.0000000000000474 75.0
YYD1_k127_6307325_8 - - - - 0.0000000002361 63.0
YYD1_k127_630929_0 Cystathionine beta-synthase K01697 - 4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008507 496.0
YYD1_k127_630929_1 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002555 449.0
YYD1_k127_630929_2 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001663 317.0
YYD1_k127_630929_3 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002453 252.0
YYD1_k127_630929_4 Type IX secretion system membrane protein PorP/SprF - - - 0.000000000000000000000000000000000000000000000000000000000000009309 228.0
YYD1_k127_6319831_0 PFAM ASPIC and UnbV - - - 8.471e-293 917.0
YYD1_k127_6328980_0 Tfp pilus assembly protein FimV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 510.0
YYD1_k127_6328980_1 Amidohydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000242 493.0
YYD1_k127_6328980_2 Glutaminase K01425 GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607 3.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 365.0
YYD1_k127_6328980_3 Protein conserved in bacteria - - - 0.000000000000000000000000000000000000132 148.0
YYD1_k127_63658_0 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043628,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000002716 226.0
YYD1_k127_63658_1 transporter antisigma-factor antagonist STAS - - - 0.0000000000000000000000000000000000000000000000001618 180.0
YYD1_k127_6366445_0 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007501 322.0
YYD1_k127_6366445_1 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009139 312.0
YYD1_k127_6366445_2 TPR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 316.0
YYD1_k127_6366445_3 C4-type zinc ribbon domain K07164 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001148 267.0
YYD1_k127_6366445_4 Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose K03272 - 2.7.1.167,2.7.7.70 0.0000000000000000000000000000000000000000000000000001426 192.0
YYD1_k127_6366445_5 Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine K01579 - 4.1.1.11 0.000000000000000000000000000000000000000000000001508 175.0
YYD1_k127_6366445_6 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.0000000000000000000000000009088 114.0
YYD1_k127_6367217_0 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007922 474.0
YYD1_k127_6367217_1 Protein of unknown function DUF58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001967 366.0
YYD1_k127_6367217_2 von Willebrand factor, type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001704 273.0
YYD1_k127_6367217_3 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000002014 200.0
YYD1_k127_6367217_4 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000001103 139.0
YYD1_k127_6372283_0 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006753 403.0
YYD1_k127_6372283_1 ligase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 367.0
YYD1_k127_6372283_2 Belongs to the LOG family K06966 - 3.2.2.10 0.000000000000000000000000000000000000000000000000000001834 197.0
YYD1_k127_638773_0 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000585 254.0
YYD1_k127_638773_1 - - - - 0.00000000000000000006187 91.0
YYD1_k127_6398619_0 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000507 484.0
YYD1_k127_6398619_1 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000007913 113.0
YYD1_k127_640448_0 Peptidase M1, membrane alanine aminopeptidase K01256 - 3.4.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002932 584.0
YYD1_k127_640448_1 amino acid K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002322 355.0
YYD1_k127_640448_2 Pfam Phospholipase Carboxylesterase - - - 0.0000000000000000000000000000000000000000003965 165.0
YYD1_k127_640448_3 PDZ DHR GLGF domain protein - - - 0.000000000000000000000000000000000000000001674 165.0
YYD1_k127_640448_4 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000005819 138.0
YYD1_k127_640448_5 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000005868 126.0
YYD1_k127_640448_6 PDZ DHR GLGF domain protein - - - 0.000000000000000000000000000002334 126.0
YYD1_k127_640448_7 Bacterial protein of unknown function (DUF937) - - - 0.0000000000000000000000000000813 123.0
YYD1_k127_6414431_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005332 361.0
YYD1_k127_6414431_1 Bacterial low temperature requirement A protein (LtrA) - - - 0.000000000000000000000000000000000000000000000005866 184.0
YYD1_k127_6415928_0 cellulase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006535 509.0
YYD1_k127_6415928_1 Hexapeptide repeat of succinyl-transferase K02617,K08279 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004497 284.0
YYD1_k127_6415928_2 TIGRFAM phenylacetic acid degradation protein paaN K02618 - 1.2.1.91,3.3.2.12 0.00000000000000000000000000000000000000000000000000000000001452 209.0
YYD1_k127_641916_0 cellulase activity - - - 0.0002775 54.0
YYD1_k127_6421985_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 1.521e-315 983.0
YYD1_k127_6421985_1 LmbE family - - - 5.595e-250 798.0
YYD1_k127_6421985_10 Phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.00000000000000000000000000000002772 130.0
YYD1_k127_6421985_11 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000003062 124.0
YYD1_k127_6421985_14 TIGRFAM MoaD family protein K03636 - - 0.00000000000000001095 87.0
YYD1_k127_6421985_2 MoeZ MoeB domain K21029,K21147 - 2.7.7.80,2.8.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003168 539.0
YYD1_k127_6421985_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009448 376.0
YYD1_k127_6421985_4 PFAM MazG nucleotide pyrophosphohydrolase K02428 - 3.6.1.66 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 364.0
YYD1_k127_6421985_5 C-terminal domain of 1-Cys peroxiredoxin K03386 - 1.11.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009842 349.0
YYD1_k127_6421985_6 Belongs to the cysteine synthase cystathionine beta- synthase family K12339 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 323.0
YYD1_k127_6421985_7 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004558 241.0
YYD1_k127_6421985_8 GTP cyclohydrolase II - - - 0.0000000000000000000000000000000000000000000000000000000000004951 216.0
YYD1_k127_6421985_9 JAB/MPN domain K21140 - 3.13.1.6 0.000000000000000000000000000000005766 132.0
YYD1_k127_6426786_0 Aldehyde K13877,K14519 - 1.2.1.26,1.2.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006909 481.0
YYD1_k127_6426786_1 Belongs to the DapA family K01714,K21062 - 3.5.4.22,4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 402.0
YYD1_k127_6426786_2 Protein of unknown function (DUF3179) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 342.0
YYD1_k127_6426786_3 Putative MetA-pathway of phenol degradation - - - 0.000000000000000000000000000000000000000000000000000007063 199.0
YYD1_k127_6426786_4 Domain of unknown function (DUF1905) - - - 0.00000000000000000000000000000000000000001113 160.0
YYD1_k127_6426786_5 Cysteine-rich motif following a subset of SET domains K07117 - - 0.0000000000001598 76.0
YYD1_k127_6427635_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.00000000000000000000000000000000000001071 151.0
YYD1_k127_6427635_1 YjbR - - - 0.0000000000000000000000000000000000236 138.0
YYD1_k127_6427635_2 methyltransferase - - - 0.00000000000000000000000000159 122.0
YYD1_k127_6427635_3 Anti-sigma-K factor rskA - - - 0.00000000000000000000007045 109.0
YYD1_k127_6427635_4 PFAM short chain dehydrogenase K00059 - 1.1.1.100 0.000000048 55.0
YYD1_k127_6429125_0 glucosamine N-acyltransferase K02536 - 2.3.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006148 327.0
YYD1_k127_6429125_1 Redoxin - - - 0.00000000000000000000000000000000000000000000000000000000002936 207.0
YYD1_k127_6429125_2 PFAM Aminotransferase class I and II K00817 - 2.6.1.9 0.0000000000756 66.0
YYD1_k127_6433336_0 regulation of response to stimulus - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007259 369.0
YYD1_k127_6433336_1 Hep Hag repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003683 265.0
YYD1_k127_6441752_0 ribonuclease BN K07058 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002673 312.0
YYD1_k127_6441752_1 Domain of Unknown Function (DUF748) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003661 284.0
YYD1_k127_6441752_2 - - - - 0.00000000000000000000000000000000000000000000000000001847 193.0
YYD1_k127_6448714_0 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000003778 145.0
YYD1_k127_6448714_1 Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane - - - 0.00000000000000004788 96.0
YYD1_k127_6456500_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 350.0
YYD1_k127_6456500_1 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.000000000000000000000000000000000000000000000000000000003192 200.0
YYD1_k127_6456500_2 SPTR Efflux transporter, RND family, MFP subunit K02005 - - 0.00000000000000000000000000000000000000008843 157.0
YYD1_k127_6478801_0 PFAM ASPIC and UnbV - - - 4.181e-282 902.0
YYD1_k127_6478801_1 DinB superfamily - - - 0.0000000000000000000000000000001039 129.0
YYD1_k127_6478801_2 - - - - 0.0000000000000000001671 92.0
YYD1_k127_6480635_0 PFAM Cytochrome c assembly protein K02198 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009295 597.0
YYD1_k127_6480635_1 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000000000000000000000000000000001619 133.0
YYD1_k127_6497249_0 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 494.0
YYD1_k127_6497249_1 Fructosamine kinase - - - 0.00000000000000000000000000000000000000000000000000000002721 200.0
YYD1_k127_650160_0 Glycosyl transferase family 21 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002884 510.0
YYD1_k127_650160_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000001803 227.0
YYD1_k127_6516306_0 COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002027 464.0
YYD1_k127_6516306_1 Shikimate kinase K00891 GO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615 2.7.1.71 0.00000000000000000000000000000000306 135.0
YYD1_k127_6516306_2 CAAX protease self-immunity K07052 - - 0.000000000000000000000000002898 118.0
YYD1_k127_6516306_3 Protein of unknown function (DUF1573) - - - 0.000000000000000000000001036 109.0
YYD1_k127_6516306_4 Belongs to the peptidase S8 family K01342,K08651,K14645 - 3.4.21.62,3.4.21.66 0.00000000000000000002712 92.0
YYD1_k127_6516306_5 Preprotein translocase subunit K03210 - - 0.00000000000000000005605 93.0
YYD1_k127_6528091_0 Amidase K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 480.0
YYD1_k127_6528091_1 Participates in initiation and elongation during chromosome replication - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001863 452.0
YYD1_k127_6528091_2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002652 241.0
YYD1_k127_6528091_3 chitinase - - - 0.000000000000000000000000003267 124.0
YYD1_k127_6528091_4 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 - - 0.0000000000000000000000003612 109.0
YYD1_k127_6528091_5 Cupin domain - - - 0.0000000000000000001051 94.0
YYD1_k127_6528091_6 Histidine kinase K02584,K07315,K08968 - 1.8.4.14,3.1.3.3 0.000000001409 60.0
YYD1_k127_6528091_7 Sodium/hydrogen exchanger family - - - 0.00000000152 60.0
YYD1_k127_652894_0 Putative esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000055 422.0
YYD1_k127_652894_1 PFAM Receptor L domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001679 289.0
YYD1_k127_6543196_0 Protein of unknown function (DUF4256) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 308.0
YYD1_k127_6543196_1 PFAM Activator of Hsp90 ATPase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002765 254.0
YYD1_k127_6543196_2 Uncharacterized protein conserved in bacteria (DUF2200) - - - 0.0000000000000000000000000000000000000000000000000000002588 195.0
YYD1_k127_6543196_3 ArsR family transcriptional regulator - - - 0.0000000000000000000000000000000000000000000000000001847 186.0
YYD1_k127_6543196_4 DoxX-like family - - - 0.00000000000000000000000000000000000000000000001921 173.0
YYD1_k127_6543196_5 WD40-like Beta Propeller Repeat K03641 - - 0.000000000001602 72.0
YYD1_k127_6543196_7 AraC-like ligand binding domain - - - 0.0004604 43.0
YYD1_k127_6553772_0 Belongs to the heme-copper respiratory oxidase family K02274 - 1.9.3.1 0.0 1022.0
YYD1_k127_6553772_1 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 1.157e-281 872.0
YYD1_k127_6553772_10 Quinol cytochrome c oxidoreductase - - - 0.00000000000000000000000000000000000000000000000004357 182.0
YYD1_k127_6553772_11 COG1331 Highly conserved protein containing a thioredoxin domain - - - 0.000000000000000000000000000000000000000000000002429 178.0
YYD1_k127_6553772_12 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077 - 0.0000000000000000000000000000000000000000001117 160.0
YYD1_k127_6553772_13 Protein of unknown function (DUF1573) - - - 0.000000000000000000000000000000000000000002051 162.0
YYD1_k127_6553772_14 Protein of unknown function (DUF420) - - - 0.000000000000000000000000000000000000000003053 160.0
YYD1_k127_6553772_15 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000004811 127.0
YYD1_k127_6553772_16 cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000006118 112.0
YYD1_k127_6553772_18 Preprotein translocase SecG subunit K03075 - - 0.000000000000000000000005438 102.0
YYD1_k127_6553772_19 Outer membrane protein beta-barrel domain - - - 0.0000000000000000000003653 106.0
YYD1_k127_6553772_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000182 572.0
YYD1_k127_6553772_20 - - - - 0.0000000000000000000005121 100.0
YYD1_k127_6553772_21 small membrane protein - - - 0.0000000000000000000007802 104.0
YYD1_k127_6553772_24 - - - - 0.0002089 49.0
YYD1_k127_6553772_3 Branched-chain amino acid aminotransferase K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 428.0
YYD1_k127_6553772_4 oxidase subunit III K02276 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006339 411.0
YYD1_k127_6553772_5 4-hydroxybenzoate polyprenyltransferase K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006344 350.0
YYD1_k127_6553772_6 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine K03648 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008229 302.0
YYD1_k127_6553772_7 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002131 277.0
YYD1_k127_6553772_8 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.00000000000000000000000000000000000000000000000000000000000000000000000003252 254.0
YYD1_k127_6553772_9 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576 3.6.1.66 0.0000000000000000000000000000000000000000000000000006801 189.0
YYD1_k127_656444_0 AAA ATPase domain - - - 1.114e-237 746.0
YYD1_k127_656444_1 AAA ATPase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005574 409.0
YYD1_k127_656444_2 catalase activity - - - 0.0000000000000000000002663 101.0
YYD1_k127_6564654_0 PFAM PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002583 445.0
YYD1_k127_6564654_1 COG2812 DNA polymerase III, gamma tau subunits K02341 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000001062 229.0
YYD1_k127_6564654_2 Belongs to the glutathione peroxidase family K00432 - 1.11.1.9 0.000000000000000000000000000000000000000000000000001944 186.0
YYD1_k127_6571170_0 SPTR CHU large protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002306 415.0
YYD1_k127_6571170_1 6-phosphogluconolactonase activity - - - 0.000000000000000000000000000004404 136.0
YYD1_k127_657342_0 Tetratricopeptide repeat - - - 1.286e-212 675.0
YYD1_k127_657342_1 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000002717 230.0
YYD1_k127_657342_2 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000008564 231.0
YYD1_k127_6583440_0 Serine dehydratase alpha chain K01752 - 4.3.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000451 332.0
YYD1_k127_6583440_1 Sulfite exporter TauE/SafE - - - 0.00000000000000000000000000000000000001648 147.0
YYD1_k127_6583440_2 Sulfite exporter TauE/SafE - - - 0.000000000000000000000000000000000009481 137.0
YYD1_k127_6608575_0 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000006555 241.0
YYD1_k127_6610522_0 Belongs to the peptidase S41A family K03797 - 3.4.21.102 3.896e-217 694.0
YYD1_k127_6610522_1 Belongs to the iron ascorbate-dependent oxidoreductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004755 482.0
YYD1_k127_6610522_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004198 352.0
YYD1_k127_6610522_3 Gliding motility protein, GldB - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003249 285.0
YYD1_k127_6610522_4 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.0000000000000000000000000000000000000000000000000000000206 205.0
YYD1_k127_6610522_5 Outer membrane protein beta-barrel domain - - - 0.00000000000000000000000000000000005037 145.0
YYD1_k127_6610522_6 Cytochrome c - - - 0.0000000000000000004486 91.0
YYD1_k127_6610522_7 Helix-hairpin-helix class 2 (Pol1 family) motifs K02335 - 2.7.7.7 0.0000004024 52.0
YYD1_k127_6613246_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family - - - 1.468e-243 772.0
YYD1_k127_6613246_1 Predicted membrane protein (DUF2238) K08984 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000009011 258.0
YYD1_k127_6613246_2 regulator of chromosome condensation, RCC1 - - - 0.0000000000000000000000000000000000000000000006832 192.0
YYD1_k127_6613246_3 Kazal type serine protease inhibitors - - - 0.0000000000000001426 81.0
YYD1_k127_6613246_4 - - - - 0.0006514 50.0
YYD1_k127_6620538_0 Fatty acid desaturase K00508 - 1.14.19.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003298 517.0
YYD1_k127_6620538_1 Fatty acid desaturase K00508 - 1.14.19.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002601 515.0
YYD1_k127_6620538_10 - - - - 0.000000000000914 78.0
YYD1_k127_6620538_11 COG3209 Rhs family protein - - - 0.00001564 56.0
YYD1_k127_6620538_2 Oxidoreductase, FAD FMN-binding protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001977 417.0
YYD1_k127_6620538_3 Secretin and TonB N terminus short domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001896 376.0
YYD1_k127_6620538_4 Glycoside hydrolase family 16 K01216 - 3.2.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007468 357.0
YYD1_k127_6620538_5 SusD family K21572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007294 349.0
YYD1_k127_6620538_6 Glycosyl hydrolases family 16 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 321.0
YYD1_k127_6620538_7 - - - - 0.000000000000000000000000000000000000000000000000000000000000008788 224.0
YYD1_k127_6620538_8 KR domain K07124 - - 0.000000000000000000000000000000000000000000000000000000009016 207.0
YYD1_k127_6620538_9 Lysine transporter LysE - - - 0.000000000000003535 83.0
YYD1_k127_662743_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003268 323.0
YYD1_k127_662743_1 - - - - 0.000000000000000000000000000000000000003841 159.0
YYD1_k127_662743_2 Histidine kinase - - - 0.00000000000000000002849 96.0
YYD1_k127_6650969_0 Y_Y_Y domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602 542.0
YYD1_k127_6656062_0 peptidylprolyl isomerase K01802,K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003056 486.0
YYD1_k127_6656062_1 penicillin-binding protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001025 261.0
YYD1_k127_6656062_2 MORN repeat protein - - - 0.000000000005382 74.0
YYD1_k127_6657283_0 TonB-dependent receptor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 552.0
YYD1_k127_6657283_1 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006042 338.0
YYD1_k127_6657283_2 AhpC/TSA family - - - 0.000000000000000007335 91.0
YYD1_k127_6657283_3 TonB-dependent receptor - - - 0.0000000000004221 74.0
YYD1_k127_6657283_4 - - - - 0.00004089 51.0
YYD1_k127_6674578_0 TIGRFAM N-terminal double-transmembrane domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003692 372.0
YYD1_k127_6674578_1 Dihydroorotase, multifunctional complex type K01465 - 3.5.2.3 0.0000000000000000000005945 99.0
YYD1_k127_6679100_0 Two component regulator propeller domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 611.0
YYD1_k127_6679100_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000000000000000000000000000000000527 247.0
YYD1_k127_6679100_2 Divergent 4Fe-4S mono-cluster - - - 0.000000000000000000000000000000000006939 141.0
YYD1_k127_6679100_3 - - - - 0.0000292 51.0
YYD1_k127_6683965_0 Outer membrane protein assembly complex, YaeT protein K07277 - - 2.306e-294 926.0
YYD1_k127_6683965_1 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009987,GO:0016093,GO:0016094,GO:0016740,GO:0016765,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0071704,GO:1901576,GO:1901615,GO:1901617 2.5.1.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002042 346.0
YYD1_k127_6683965_2 Protein of unknown function (DUF3089) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 332.0
YYD1_k127_6683965_3 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000005002 122.0
YYD1_k127_6683965_4 Outer membrane protein beta-barrel domain - - - 0.00085 45.0
YYD1_k127_6685986_0 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001257 248.0
YYD1_k127_6685986_1 FR47-like protein - - - 0.0000000000000000000000007866 109.0
YYD1_k127_6695219_0 PFAM AICARFT IMPCHase bienzyme K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008929 601.0
YYD1_k127_6695219_1 HD domain K07023 - - 0.00000000002526 64.0
YYD1_k127_6710224_0 COG1055 Na H antiporter NhaD and related arsenite - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009603 537.0
YYD1_k127_6710224_1 fatty acid desaturase - - - 0.000000000000000000000000000000000000000000000000000000557 196.0
YYD1_k127_6710224_2 tail collar domain protein - - - 0.0000000000000000008554 96.0
YYD1_k127_6710224_3 Two component transcriptional regulator, LytTR family K02477 - - 0.000000000000000001358 90.0
YYD1_k127_6710224_4 Tetratricopeptide repeat - - - 0.0000001914 53.0
YYD1_k127_6737758_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002726 362.0
YYD1_k127_6737758_1 LysM domain - - - 0.0000000000000000000000000000000000000000000000003006 183.0
YYD1_k127_6737758_2 - - - - 0.00000000000009066 75.0
YYD1_k127_6737758_3 Putative FMN-binding domain K07734 - - 0.00000000001412 66.0
YYD1_k127_6737758_4 dihydrolipoamide dehydrogenase K00382 - 1.8.1.4 0.00000234 50.0
YYD1_k127_6743374_0 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 374.0
YYD1_k127_6743374_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002208 364.0
YYD1_k127_6743374_2 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002603 341.0
YYD1_k127_6743374_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000007365 204.0
YYD1_k127_6743374_4 Belongs to the universal ribosomal protein uS9 family K02996 GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000001687 196.0
YYD1_k127_6743374_5 D-isomer specific 2-hydroxyacid dehydrogenase K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000002023 188.0
YYD1_k127_6743374_6 Protein of unknown function (DUF3299) K09950 - - 0.000000000000000000000000000000000000009272 150.0
YYD1_k127_6751387_0 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000433 549.0
YYD1_k127_6751387_1 domain, Protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007225 357.0
YYD1_k127_6751387_2 ketosteroid isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000004637 227.0
YYD1_k127_6765231_0 protein secretion - - - 0.000000000000000000000000000000000000000000000000003256 207.0
YYD1_k127_6765231_1 metallopeptidase activity K13735 - - 0.000000000000000000000000000000000000000001177 173.0
YYD1_k127_6770857_0 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002815 359.0
YYD1_k127_6770857_1 Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003633 275.0
YYD1_k127_6770857_2 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000001239 156.0
YYD1_k127_6770857_3 Cytochrome c - - - 0.0000000000000000000000003532 109.0
YYD1_k127_6781353_0 membrane protease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007867 376.0
YYD1_k127_6781353_1 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000006045 262.0
YYD1_k127_6781353_2 Redoxin - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003884 257.0
YYD1_k127_6781353_3 Thioredoxin - - - 0.0000000000000000000000000000000000000000002122 164.0
YYD1_k127_6781353_5 COG NOG17292 non supervised orthologous group - - - 0.00000000000008987 74.0
YYD1_k127_6791016_0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) K01966 - 2.1.3.15,6.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003198 307.0
YYD1_k127_6791016_1 isomerase activity - - - 0.0000000000000000000000000000008521 142.0
YYD1_k127_6791016_2 isomerase activity - - - 0.00000004933 63.0
YYD1_k127_6796816_0 N-acetyl-alpha-D-glucosaminyl L-malate synthase K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002933 388.0
YYD1_k127_6796816_1 MerR family K22491 - - 0.00000000000000000000000000000000000000000000009464 179.0
YYD1_k127_6796816_2 YceI-like domain - - - 0.0000000000000000000000000000000000000000000001615 175.0
YYD1_k127_6796816_3 NUDIX domain K01515,K12945 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0043167,GO:0043169,GO:0046872,GO:0052751 3.6.1.13 0.00000000000000000000000000000001447 132.0
YYD1_k127_6803125_0 Fungalysin metallopeptidase (M36) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 607.0
YYD1_k127_6803125_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218,K03437 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000002223 238.0
YYD1_k127_6803125_2 - - - - 0.00000000000000000000000006387 112.0
YYD1_k127_6808129_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003919 599.0
YYD1_k127_6808129_1 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 607.0
YYD1_k127_6808129_2 An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism K03595 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 355.0
YYD1_k127_6808129_3 phosphorylase K00757 - 2.4.2.3 0.00000000000000000000000000000000000000000000000000000000000000000000000005897 257.0
YYD1_k127_6808129_4 Polysaccharide biosynthesis protein K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000005964 238.0
YYD1_k127_6808129_5 Dioxygenase K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000002164 227.0
YYD1_k127_6808129_6 - - - - 0.0000000000000000000000000000000000000000000000000000000000000003402 226.0
YYD1_k127_6808129_7 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 - 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000003701 217.0
YYD1_k127_6808129_8 ATPase kinase involved in NAD metabolism - - - 0.000000000000000000000005333 111.0
YYD1_k127_6813203_0 Concanavalin A-like lectin/glucanases superfamily - - - 0.0 1297.0
YYD1_k127_6821686_0 Parallel beta-helix repeats - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003964 375.0
YYD1_k127_6822905_0 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009796 514.0
YYD1_k127_6822905_1 Outer membrane protein beta-barrel domain - - - 0.000000000000000000000000000000000000000000000000000000000000000008238 233.0
YYD1_k127_6822905_2 PFAM Uncharacterised protein family UPF0047 - - - 0.0000000000000000000000000000000000000000001683 164.0
YYD1_k127_6822905_3 HAD-superfamily hydrolase subfamily IA, variant 3 K20866 - 3.1.3.10 0.0000000000000000000000000000000000001602 148.0
YYD1_k127_6822905_4 Lysine exporter protein (Lyse ygga) - - - 0.0000000000000000007346 94.0
YYD1_k127_6839319_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178 484.0
YYD1_k127_6839319_1 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004176 374.0
YYD1_k127_6839319_2 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 342.0
YYD1_k127_6839319_3 PFAM Methyltransferase type 12 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001415 296.0
YYD1_k127_6839319_4 NAD(P)H-binding - - - 0.00000000000000000000000000000000004746 141.0
YYD1_k127_6839319_5 TIGRFAM Gliding motility-associated protein, GldC - - - 0.000000000000000000000004797 105.0
YYD1_k127_6869576_0 ASPIC and UnbV - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001608 471.0
YYD1_k127_6869576_1 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000005475 238.0
YYD1_k127_6869576_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000002643 190.0
YYD1_k127_6869576_3 Histidine phosphatase superfamily (branch 1) - - - 0.0000000000000000004144 92.0
YYD1_k127_6877684_0 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000000000000000000001344 253.0
YYD1_k127_6877684_1 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000224 188.0
YYD1_k127_6877684_2 Belongs to the ompA family - - - 0.00000000000000000000000000000000000000000002822 175.0
YYD1_k127_6877684_3 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000002188 67.0
YYD1_k127_6880278_0 PFAM Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000000000000000004888 253.0
YYD1_k127_6880278_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000004283 233.0
YYD1_k127_6880278_2 PFAM Bacterial lipid A biosynthesis acyltransferase K02517 - 2.3.1.241 0.000000000000000000000000000000000000000000000000000000000001948 216.0
YYD1_k127_6880278_3 COG3279 Response regulator of the LytR AlgR family K02477 - - 0.0000000000000000002128 93.0
YYD1_k127_6881368_0 beta-lactamase - - - 2.305e-264 821.0
YYD1_k127_6881368_1 PFAM YeeE YedE family (DUF395) K07112 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002735 246.0
YYD1_k127_6881368_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000000000000002008 220.0
YYD1_k127_6884152_0 SnoaL-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 604.0
YYD1_k127_6890368_0 Carboxypeptidase regulatory-like domain - - - 9.365e-313 991.0
YYD1_k127_6894162_0 ECF sigma factor K03088 - - 0.00000000000000000000000000004017 118.0
YYD1_k127_6897979_0 Arginine deiminase K01478 - 3.5.3.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008695 542.0
YYD1_k127_6897979_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004504 342.0
YYD1_k127_6897979_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616,K08314 - 2.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000002602 233.0
YYD1_k127_6897979_3 ribonuclease BN K07058 - - 0.000000000000000000000000000000000000000000000000000000000000003798 228.0
YYD1_k127_6897979_4 thioesterase K07107 - - 0.0000000000000000000000000000000000000000002966 162.0
YYD1_k127_6906168_0 Belongs to the glycosyl hydrolase 28 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 528.0
YYD1_k127_6906168_1 PFAM Pentapeptide repeats (8 copies) - - - 0.000000000000000000002425 106.0
YYD1_k127_6911681_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family K01768 - 4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003332 422.0
YYD1_k127_6911681_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000001696 222.0
YYD1_k127_6911681_2 SnoaL-like domain - - - 0.0000000000000000000000000000000000000003899 152.0
YYD1_k127_6911681_3 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000281 149.0
YYD1_k127_6911681_4 NhaP-type Na H and K H K03316 - - 0.000003583 49.0
YYD1_k127_692080_0 PFAM Dynamin family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002221 555.0
YYD1_k127_692080_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 508.0
YYD1_k127_692080_2 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004398 280.0
YYD1_k127_692080_3 Domain of unknown function (DUF4252) - - - 0.000000000000000000000000000000000000000003605 160.0
YYD1_k127_692080_4 Pfam Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000105 145.0
YYD1_k127_692080_5 Sigma-70, region 4 K03088 - - 0.000000000000000000000000000001062 127.0
YYD1_k127_692080_6 WbqC-like protein family - - - 0.0000000000000000000000008711 113.0
YYD1_k127_692080_7 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 - 2.7.4.6 0.000000000006623 65.0
YYD1_k127_692080_8 Psort location Cytoplasmic, score 8.96 - - - 0.000000006079 64.0
YYD1_k127_699552_0 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001935 613.0
YYD1_k127_699552_1 FtsX-like permease family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005739 383.0
YYD1_k127_699552_10 GNAT family acetyltransferase K03829 - - 0.00000000000000000000000000000000000008257 144.0
YYD1_k127_699552_11 Histidine kinase - - - 0.0000000000000000000000003624 106.0
YYD1_k127_699552_12 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000008526 68.0
YYD1_k127_699552_2 LytTr DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002808 370.0
YYD1_k127_699552_3 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001861 349.0
YYD1_k127_699552_4 ABC-type transport system involved in lipoprotein release permease component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 356.0
YYD1_k127_699552_5 AdoMet dependent proline di-methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003581 323.0
YYD1_k127_699552_6 Outer membrane lipoprotein-sorting protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003132 321.0
YYD1_k127_699552_7 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 307.0
YYD1_k127_699552_8 COGs COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000003231 213.0
YYD1_k127_699552_9 - - - - 0.0000000000000000000000000000000000000000000000000000000001723 211.0
YYD1_k127_702407_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit K02111 - 3.6.3.14 1.161e-291 900.0
YYD1_k127_702407_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.000000000000000000000000000000000000000000002232 170.0
YYD1_k127_702407_2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex K02115 - - 0.000000000000000000002878 94.0
YYD1_k127_702407_3 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) K02109 - - 0.00000000000004352 74.0
YYD1_k127_709909_0 Belongs to the glycosyl hydrolase 2 family K01190 - 3.2.1.23 2.512e-268 837.0
YYD1_k127_709909_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000394 228.0
YYD1_k127_71381_0 serine-type peptidase activity K08676 - - 0.0 1267.0
YYD1_k127_720693_0 Required for chromosome condensation and partitioning K03529 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 519.0
YYD1_k127_720693_1 queuosine salvage K09125 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 331.0
YYD1_k127_720693_2 COG0023 Translation initiation factor 1 (eIF-1 SUI1) and related K03113 - - 0.00000000000000006432 85.0
YYD1_k127_720693_3 peptidase activity K18988 - 3.4.16.4 0.00000000000002874 84.0
YYD1_k127_73121_0 Putative serine dehydratase domain K20757 - 4.3.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 372.0
YYD1_k127_73121_1 Cellulase N-terminal ig-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007124 290.0
YYD1_k127_73121_2 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000004096 259.0
YYD1_k127_73121_3 Ryanodine receptor Ryr - - - 0.000000000000000000000000000000000000003768 166.0
YYD1_k127_73121_4 TIR domain K12132 - 2.7.11.1 0.000000000000000000000000000003127 139.0
YYD1_k127_73121_5 Dodecin K09165 - - 0.0000000000000000003612 88.0
YYD1_k127_73121_6 protein serine/threonine phosphatase activity K20074 - 3.1.3.16 0.0000000000000004838 93.0
YYD1_k127_73121_7 PFAM Hemolysin-type calcium-binding repeat (2 copies) - - - 0.0009059 51.0
YYD1_k127_759300_0 of the beta-lactamase superfamily I K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000002945 269.0
YYD1_k127_759300_1 - - - - 0.0000000000000000000003138 98.0
YYD1_k127_759300_2 Outer membrane protein beta-barrel domain - - - 0.000000000000002276 85.0
YYD1_k127_759752_0 Cys/Met metabolism PLP-dependent enzyme K01761 - 4.4.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001978 360.0
YYD1_k127_759752_1 COG0604 NADPH quinone reductase and related Zn-dependent - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 335.0
YYD1_k127_759752_2 TIGRFAM phosphoesterase, MJ0936 family K07095 - - 0.00000000000000000000000000000000000000000000000000000000000004587 217.0
YYD1_k127_759752_3 isomerase activity - - - 0.00003974 51.0
YYD1_k127_760256_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 1.462e-221 692.0
YYD1_k127_793890_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003778 483.0
YYD1_k127_793890_1 TIGRFAM Orotidine 5'-phosphate decarboxylase, subfamily 2 K01591 GO:0003674,GO:0003824,GO:0004590,GO:0006139,GO:0006206,GO:0006207,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019856,GO:0034641,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046112,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001566 297.0
YYD1_k127_793890_2 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.00000000000000000000000000000000000000000000000001808 181.0
YYD1_k127_793890_3 AhpC/TSA family - - - 0.0000000000000000000000000000000000000000000002266 173.0
YYD1_k127_793890_4 NifU-like domain - - - 0.00000000000000000000000005115 109.0
YYD1_k127_793890_5 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0003092 49.0
YYD1_k127_795531_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.0000000000000000000000000000000000000000000000000000000000001634 218.0
YYD1_k127_795531_2 - - - - 0.00000004149 64.0
YYD1_k127_795674_0 Heat shock 70 kDa protein K04043 - - 2.512e-287 888.0
YYD1_k127_795674_1 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002437 421.0
YYD1_k127_795674_2 Belongs to the ompA family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000362 380.0
YYD1_k127_795674_3 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 297.0
YYD1_k127_795674_4 - - - - 0.0000000000000000000000000000000000000000000000000000000000001889 225.0
YYD1_k127_795674_5 PFAM NADPH-dependent FMN reductase - - - 0.000000000002906 70.0
YYD1_k127_795674_6 Asparaginase, N-terminal K01424 - 3.5.1.1 0.000000000006691 65.0
YYD1_k127_80132_0 Leukotriene A4 hydrolase, C-terminal - - - 9.248e-222 703.0
YYD1_k127_80132_1 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 333.0
YYD1_k127_80132_2 Redoxin - - - 0.000000000000000000000000000000000000000000000000001096 188.0
YYD1_k127_80132_3 Methyltransferase domain - - - 0.00000000000000000000000002571 110.0
YYD1_k127_80817_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003073 524.0
YYD1_k127_80817_1 COG1538 Outer membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004519 405.0
YYD1_k127_80817_2 COG3209 Rhs family protein - - - 0.0000000000002007 83.0
YYD1_k127_809754_0 - - - - 0.0000000000000000000003354 104.0
YYD1_k127_811274_0 of the AAA class - - - 0.0 1168.0
YYD1_k127_811274_1 PFAM D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.00000000000000000000000000000000005194 145.0
YYD1_k127_811274_2 Protein of unknown function (DUF983) - - - 0.0000000000000000000000003578 109.0
YYD1_k127_811274_3 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.000000000000002676 83.0
YYD1_k127_824309_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006173 531.0
YYD1_k127_82749_0 competence protein COMEC - - - 0.0000000000000000000000000000000000000000000000000000000000005 220.0
YYD1_k127_82749_1 competence protein COMEC - - - 0.0000000000000000000000000002671 124.0
YYD1_k127_829396_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0 1028.0
YYD1_k127_829396_1 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 312.0
YYD1_k127_829396_2 COGs COG0589 Universal stress protein UspA and related nucleotide-binding protein - - - 0.00000000000000000000000000000000000000000005649 165.0
YYD1_k127_829396_3 NADPH-dependent FMN reductase - - - 0.0000000000000000000000000000000000000000107 161.0
YYD1_k127_829396_4 Sortilin, neurotensin receptor 3, - - - 0.000000000000000000000000001248 115.0
YYD1_k127_829396_5 - - - - 0.00000000000000000000271 98.0
YYD1_k127_829396_6 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family K03496 - - 0.0000000000000000001147 90.0
YYD1_k127_840163_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007603 470.0
YYD1_k127_840163_1 - - - - 0.000000000001094 68.0
YYD1_k127_84929_0 Two component regulator three Y domain protein - - - 0.0000000000000000000000000000000000000286 166.0
YYD1_k127_84929_1 Protein of unknown function (DUF2442) - - - 0.00000004475 55.0
YYD1_k127_851093_0 TamB, inner membrane protein subunit of TAM complex - - - 1.189e-220 740.0
YYD1_k127_851093_1 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 1.268e-204 646.0
YYD1_k127_851093_2 homogentisate 1,2-dioxygenase K00451 - 1.13.11.5 5.371e-196 617.0
YYD1_k127_851093_3 4-hydroxyphenylpyruvate dioxygenase K00457 - 1.13.11.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005757 597.0
YYD1_k127_851093_4 Peptidase family M23 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 343.0
YYD1_k127_851093_5 PFAM SMP-30 Gluconolaconase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005796 347.0
YYD1_k127_851093_6 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001109 275.0
YYD1_k127_851093_7 - - - - 0.0000000000002775 80.0
YYD1_k127_851093_8 exo-alpha-(2->6)-sialidase activity - - - 0.00000000004095 78.0
YYD1_k127_851093_9 TamB, inner membrane protein subunit of TAM complex - - - 0.00001091 48.0
YYD1_k127_854755_0 Peptide-N-glycosidase F, C terminal - - - 2.78e-289 921.0
YYD1_k127_854755_1 - - - - 0.0000000000000000000000001716 109.0
YYD1_k127_859144_0 DNA polymerase III alpha subunit K02337 - 2.7.7.7 0.0 1227.0
YYD1_k127_861132_0 C-terminal domain of CHU protein family - - - 0.00000000000000000000000000000000000000000000000000000000000000000002429 266.0
YYD1_k127_861132_1 amine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000002915 200.0
YYD1_k127_86296_0 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005841 605.0
YYD1_k127_86296_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000188 418.0
YYD1_k127_86296_2 heat shock protein binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000009656 231.0
YYD1_k127_86296_3 heat shock protein binding - - - 0.00000000000000000000000000000000000000000000000000000000000831 239.0
YYD1_k127_86296_4 - - - - 0.0000000000000000000000000000000000000000000000000000149 197.0
YYD1_k127_86296_5 Cytochrome C assembly protein - - - 0.0000000000000000006558 88.0
YYD1_k127_86296_6 Class III cytochrome C family - - - 0.000000000005761 81.0
YYD1_k127_863989_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301 411.0
YYD1_k127_863989_1 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000002812 267.0
YYD1_k127_863989_2 membrane transporter protein K07090 - - 0.000000000000000000000000000000000000000000000000000001613 193.0
YYD1_k127_864324_0 arylsulfatase A K01130 - 3.1.6.1 1.615e-274 852.0
YYD1_k127_864324_1 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000006929 251.0
YYD1_k127_864324_2 DoxX-like family - - - 0.000000000000000000000000000000000000000002744 160.0
YYD1_k127_864324_3 - - - - 0.000000000000000000000000000001475 128.0
YYD1_k127_864324_4 Biogenesis protein - - - 0.00000000000000000000000000001909 124.0
YYD1_k127_864324_5 - - - - 0.00000000000000000004781 94.0
YYD1_k127_864324_6 Biogenesis protein - - - 0.0000002859 51.0
YYD1_k127_877849_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 0.0 1186.0
YYD1_k127_877849_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0 1096.0
YYD1_k127_877849_10 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0002061 44.0
YYD1_k127_877849_2 Fructose-bisphosphate aldolase K01624 - 4.1.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002684 538.0
YYD1_k127_877849_3 Belongs to the ATCase OTCase family K00609 GO:0003674,GO:0003824,GO:0004070,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016741,GO:0016743,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005426 497.0
YYD1_k127_877849_4 Belongs to the ompA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002866 507.0
YYD1_k127_877849_5 Pkd domain containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000001251 224.0
YYD1_k127_877849_6 uracil phosphoribosyltransferase K02825 - 2.4.2.9 0.0000000000000000000000000000000000000000000000000000000001444 213.0
YYD1_k127_877849_7 - - - - 0.000000000000000000000000000000009083 132.0
YYD1_k127_877849_9 - - - - 0.000154 50.0
YYD1_k127_879560_0 Glycosyltransferase family 36 - - - 0.0 1088.0
YYD1_k127_879560_1 Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type K11381 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000006176 237.0
YYD1_k127_879560_2 - - - - 0.0000000000000000000000000000006386 126.0
YYD1_k127_879560_3 Putative carbohydrate binding domain K00702 - 2.4.1.20 0.000000001292 61.0
YYD1_k127_883556_0 Sugar (and other) transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 612.0
YYD1_k127_883556_2 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000001257 211.0
YYD1_k127_883556_3 1-(5-phosphoribosyl)-5- (5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase K01814 GO:0000105,GO:0000162,GO:0003674,GO:0003824,GO:0003949,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 5.3.1.16 0.00000000000000000000000001486 114.0
YYD1_k127_904904_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2229.0
YYD1_k127_904904_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 0.0 2155.0
YYD1_k127_904904_10 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.000000000000000000000000000000000000000000000008115 174.0
YYD1_k127_904904_11 PFAM Sigma 54 modulation protein S30EA ribosomal protein K05808 - - 0.000000000000000000000000000002824 123.0
YYD1_k127_904904_12 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000000000005462 73.0
YYD1_k127_904904_13 Lipid-binding putative hydrolase - - - 0.0000000000005359 77.0
YYD1_k127_904904_15 Domain of unknown function (DUF5011) - - - 0.0005621 42.0
YYD1_k127_904904_16 recombinase activity - - - 0.0006317 43.0
YYD1_k127_904904_2 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 1.022e-217 679.0
YYD1_k127_904904_3 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007336 338.0
YYD1_k127_904904_4 C-terminal domain of CHU protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187 314.0
YYD1_k127_904904_5 Participates in transcription elongation, termination and antitermination K02601 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007299 301.0
YYD1_k127_904904_6 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009054 282.0
YYD1_k127_904904_7 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000005089 233.0
YYD1_k127_904904_8 riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.000000000000000000000000000000000000000000000000000000000001043 215.0
YYD1_k127_904904_9 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000000000000007899 197.0
YYD1_k127_906996_0 Domain of unknown function (DUF5122) beta-propeller - - - 0.0000000000000000000000000000000000000000000000000000000000001435 233.0
YYD1_k127_906996_1 - - - - 0.0000000000000000000000000000000000000000000003427 171.0
YYD1_k127_907392_0 Peptidase family C25 - - - 6.915e-267 882.0
YYD1_k127_907392_1 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000352 413.0
YYD1_k127_907392_2 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001904 302.0
YYD1_k127_907392_3 Alpha beta hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003235 260.0
YYD1_k127_907392_4 ABC-2 type transporter K09690 - - 0.00000000000000000000000000000000000000000000000000000000000000001065 232.0
YYD1_k127_907392_5 GHMP kinases N terminal domain K00869 - 2.7.1.36 0.00000000000000000000000000000000000000002024 164.0
YYD1_k127_907392_7 RecX family K03565 - - 0.0000000000000000000013 101.0
YYD1_k127_908161_0 HlyD family secretion protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 327.0
YYD1_k127_908161_1 Alginate lyase - - - 0.0000000000000000000000000000002087 136.0
YYD1_k127_909103_0 carbohydrate binding - - - 0.0 1784.0
YYD1_k127_909103_1 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000000000000000000000000000000000000000000000000000328 206.0
YYD1_k127_923615_0 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000002735 222.0
YYD1_k127_923615_1 PFAM YicC-like family, N-terminal region - - - 0.000000000000000000000000000000000000000000000001641 181.0
YYD1_k127_923615_2 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.000000000000000000000000000000000000001138 153.0
YYD1_k127_923615_3 protein affecting Mg2 Co2 transport K06195 - - 0.000000000000000000000000000001674 125.0
YYD1_k127_936932_0 PFAM Aminotransferase class I and II K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005799 566.0
YYD1_k127_936932_1 Pyridoxal-phosphate dependent enzyme K01697,K01738 - 2.5.1.47,4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001004 417.0
YYD1_k127_936932_2 NAD dependent epimerase dehydratase family protein K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000005359 221.0
YYD1_k127_936932_4 Thermolysin metallopeptidase, catalytic domain K01400 - 3.4.24.28 0.0002601 51.0
YYD1_k127_944550_0 Protein of unknown function (DUF2867) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002464 308.0
YYD1_k127_944550_1 Protein of unknown function (DUF2459) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001827 246.0
YYD1_k127_944550_2 Two component transcriptional regulator, LytTR family K02477 - - 0.0000000000000001197 87.0
YYD1_k127_946415_0 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639,K20967 - 4.1.99.22,4.6.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006823 439.0
YYD1_k127_946415_1 MoeA C-terminal region (domain IV) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001868 363.0
YYD1_k127_946415_2 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003555 283.0
YYD1_k127_946415_3 NlpE N-terminal domain - - - 0.000000000000000000000000000000000001564 145.0
YYD1_k127_946415_4 META domain - - - 0.000000000000000005086 87.0
YYD1_k127_947759_0 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 354.0
YYD1_k127_947759_1 O-Antigen ligase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002209 354.0
YYD1_k127_9498_0 Lamin Tail Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000491 226.0
YYD1_k127_9498_1 Diacylglycerol kinase K00887,K00901 - 2.7.1.107,2.7.1.66 0.0000000000000000000002543 101.0
YYD1_k127_9498_2 endonuclease exonuclease phosphatase - - - 0.000002046 59.0
YYD1_k127_952517_0 Organic solvent tolerance protein OstA - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001521 279.0
YYD1_k127_952517_1 PFAM Pregnancy-associated plasma protein-A - - - 0.0000000000000000000000000000000000000000000000000704 192.0
YYD1_k127_96706_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 577.0
YYD1_k127_96706_1 self proteolysis K03404,K07114,K15125,K20276 - 6.6.1.1 0.00000000000000000000000000000000000003932 152.0
YYD1_k127_978946_0 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006422 519.0
YYD1_k127_978946_1 Protein of unknown function (DUF1800) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000924 494.0
YYD1_k127_978946_2 membrane protein, TerC K05794 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001621 398.0
YYD1_k127_978946_3 Polysaccharide biosynthesis protein K08679 - 5.1.3.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002787 390.0
YYD1_k127_978946_4 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002137 376.0
YYD1_k127_978946_6 acyl-coa hydrolase K01073 - 3.1.2.20 0.0000000000000000000000000000000001836 137.0
YYD1_k127_978946_7 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000002064 117.0
YYD1_k127_978946_8 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 - - 0.00001098 48.0
YYD1_k127_979262_0 FAD-dependent dehydrogenase K07137 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006266 609.0
YYD1_k127_979262_1 SURF4 family K15977 - - 0.0000000000000000000000000000000000000001309 154.0
YYD1_k127_979262_2 2TM domain - - - 0.000004971 55.0
YYD1_k127_990634_0 TonB dependent receptor - - - 4.966e-236 745.0
YYD1_k127_990634_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 2.477e-210 663.0
YYD1_k127_990634_2 PFAM Cytochrome c assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632 368.0
YYD1_k127_990634_3 Transcriptional regulator, asnc family K03719,K05800 - - 0.00000000000000000000000000000000000000000000000000000000000000002349 226.0
YYD1_k127_990634_5 GumN protein K09973 - - 0.00000000000000000000000000000007514 135.0