logo

Overview

ID MAG04617
Name YYD1_bin.11
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Sysuimicrobiota
Class Sysuimicrobiia
Order Sysuimicrobiales
Family Kaftiobacteriaceae
Genus Kaftiobacterium
Species Kaftiobacterium sp035763845
Assembly information
Completeness (%) 75.53
Contamination (%) 0.69
GC content (%) 71.0
N50 (bp) 7,301
Genome size (bp) 1,878,542

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1923

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_101013_0 Molybdopterin oxidoreductase Fe4S4 domain K00336 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006363 587.0
YYD1_k127_101013_1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005046 500.0
YYD1_k127_101013_10 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.00000000000000000000000000000000000006241 164.0
YYD1_k127_101013_11 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00332 - 1.6.5.3 0.000000000000000000000000000000002634 142.0
YYD1_k127_101013_12 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.00000000000000000000000000007384 126.0
YYD1_k127_101013_13 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00330 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098796,GO:1901135,GO:1901360,GO:1901564,GO:1902494 1.6.5.3 0.0000000000000000000000000001558 118.0
YYD1_k127_101013_14 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008961,GO:0009058,GO:0009059,GO:0009898,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0019538,GO:0031224,GO:0031226,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:0140096,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000004663 113.0
YYD1_k127_101013_15 Calcineurin-like phosphoesterase superfamily domain - - - 0.0000000000000000000000003069 110.0
YYD1_k127_101013_16 PFAM NADH-ubiquinone plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000028 100.0
YYD1_k127_101013_17 Helix-turn-helix XRE-family like proteins - - - 0.000000776 55.0
YYD1_k127_101013_2 TIGRFAM proton-translocating NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 502.0
YYD1_k127_101013_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004451 463.0
YYD1_k127_101013_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 454.0
YYD1_k127_101013_5 Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins K04487 - 2.8.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003648 434.0
YYD1_k127_101013_6 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000858 397.0
YYD1_k127_101013_7 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002794 347.0
YYD1_k127_101013_8 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00331 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000001948 243.0
YYD1_k127_101013_9 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000025 224.0
YYD1_k127_1037513_0 Required for chromosome condensation and partitioning K03529 GO:0003674,GO:0005488,GO:0005515,GO:0042802 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004296 586.0
YYD1_k127_1037513_1 glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008814 282.0
YYD1_k127_1037513_2 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) K03110 - - 0.0000000000000000000000000000000000000000001477 164.0
YYD1_k127_1037513_3 Protein of unknown function (DUF402) - - - 0.0000000000000001223 88.0
YYD1_k127_107037_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002945 398.0
YYD1_k127_107037_1 Nitroreductase family - - - 0.000000000000000000000000000000000001012 146.0
YYD1_k127_107037_2 Aha1 domain family - GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006950,GO:0008047,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0030234,GO:0032781,GO:0033554,GO:0034605,GO:0043085,GO:0043462,GO:0044093,GO:0044424,GO:0044464,GO:0050790,GO:0050896,GO:0051087,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0098772 - 0.000000000000000000000003906 117.0
YYD1_k127_107037_3 PFAM MOSC domain - - - 0.00000000000000000000504 98.0
YYD1_k127_107037_4 Flagellar rod assembly protein muramidase FlgJ K02395 - - 0.00000000000000002693 91.0
YYD1_k127_1082463_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004416 528.0
YYD1_k127_1082463_1 Acetamidase formamidase K01455 - 3.5.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 388.0
YYD1_k127_1082463_2 Oligopeptide/dipeptide transporter, C-terminal region K15583 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001295 311.0
YYD1_k127_1082463_3 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000007818 175.0
YYD1_k127_1149033_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003199 404.0
YYD1_k127_1149033_1 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000004675 194.0
YYD1_k127_1149033_2 Protein of unknown function (DUF2905) - - - 0.000000000003412 78.0
YYD1_k127_1149033_3 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000729 44.0
YYD1_k127_1156136_0 RNA polymerase sigma factor, sigma-70 family K03091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002088 302.0
YYD1_k127_1156136_1 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.00000000000000000000000000000000000000000000000000000000000000000000008064 247.0
YYD1_k127_1156136_2 PFAM VanW family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001195 256.0
YYD1_k127_1156136_3 Spermine/spermidine synthase domain - - - 0.00000000000000000000000003717 114.0
YYD1_k127_1156136_4 DALR_2 K01883 GO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576 6.1.1.16 0.0000002076 56.0
YYD1_k127_1157247_0 UvrD/REP helicase N-terminal domain K03657,K07465 - 3.6.4.12 8.866e-318 1010.0
YYD1_k127_1157247_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001719 276.0
YYD1_k127_1157247_2 AAA domain - - - 0.00000000000000000000000000417 129.0
YYD1_k127_1157247_3 Calcineurin-like phosphoesterase K03547 - - 0.0000000000000000000000005247 121.0
YYD1_k127_1157247_4 Modulates RecA activity K03565 - - 0.000000000000000000008496 102.0
YYD1_k127_1167717_0 Belongs to the sigma-70 factor family. ECF subfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004283 558.0
YYD1_k127_1167717_1 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008084 385.0
YYD1_k127_1167717_2 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002653 293.0
YYD1_k127_1167717_3 Aldehyde dehydrogenase K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001787 261.0
YYD1_k127_1167717_4 YCII-related domain - - - 0.000000000000000000000000000000000000000000000001844 177.0
YYD1_k127_1167717_5 Belongs to the peptidase S16 family - - - 0.000000000000002414 80.0
YYD1_k127_1216183_0 Receptor family ligand binding region K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 445.0
YYD1_k127_1216183_1 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006937 413.0
YYD1_k127_1216183_2 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 409.0
YYD1_k127_1216183_3 PFAM ABC transporter related K01995,K01998 - - 0.000000000000000000000000000000000000000000000000000000000000399 214.0
YYD1_k127_1237363_0 Aldehyde oxidase and xanthine dehydrogenase, a b hammerhead domain K03520,K11177 - 1.17.1.4,1.2.5.3 0.0 1070.0
YYD1_k127_1237363_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01907 - 6.2.1.16 2.474e-236 742.0
YYD1_k127_1237363_10 Putative zinc-finger - GO:0005575,GO:0016020 - 0.00003763 56.0
YYD1_k127_1237363_2 PFAM Aldehyde dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007396 534.0
YYD1_k127_1237363_3 CO dehydrogenase flavoprotein domain protein K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000006248 261.0
YYD1_k127_1237363_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000009557 225.0
YYD1_k127_1237363_5 Psort location CytoplasmicMembrane, score - - - 0.00000000000000000000000000000000000000000000000000000000008997 215.0
YYD1_k127_1237363_6 G5 domain protein - - - 0.00000000000000000000000000000001854 133.0
YYD1_k127_1237363_7 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000000000000000007225 120.0
YYD1_k127_1237363_8 Domain of unknown function (DUF4349) - - - 0.000000000000000000000000001065 129.0
YYD1_k127_1237363_9 Protein of unknown function (DUF2877) - - - 0.00000000000000122 89.0
YYD1_k127_1308957_0 xanthine dehydrogenase, a b hammerhead - - - 4.01e-298 934.0
YYD1_k127_1308957_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 509.0
YYD1_k127_1308957_2 PFAM amidohydrolase K01464 - 3.5.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 480.0
YYD1_k127_1308957_3 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004315 371.0
YYD1_k127_1308957_4 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003426 282.0
YYD1_k127_1308957_5 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000003259 229.0
YYD1_k127_1308957_6 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis K00759 - 2.4.2.7 0.0000000000000000000000000000000000000001539 160.0
YYD1_k127_1324781_0 Transport permease protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 364.0
YYD1_k127_1324781_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003501 314.0
YYD1_k127_1324781_2 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002866 294.0
YYD1_k127_1324781_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 - - 0.000000000000000000000000000000000000000000001866 181.0
YYD1_k127_1324781_4 outer membrane efflux protein - - - 0.0000000000000000000000000000000000000000008121 178.0
YYD1_k127_1324781_5 PFAM regulatory protein TetR - - - 0.0000000000000002797 90.0
YYD1_k127_1324781_6 CAAX protease self-immunity - - - 0.000000009502 60.0
YYD1_k127_1339604_0 Domain of unknown function (DUF1998) K06877 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 553.0
YYD1_k127_1339604_1 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 - 2.1.1.198 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000846 302.0
YYD1_k127_1339604_2 Dihydrodipicolinate synthase K01714,K22397 - 4.1.2.28,4.3.3.7 0.00000000000000000000000000000000000000000000000000000000000001301 239.0
YYD1_k127_1339604_3 TIGRFAM TIGR00725 family protein K06966 - 3.2.2.10 0.0000000000000000000000000000000000006268 149.0
YYD1_k127_1347159_0 Purine nucleoside phosphorylase which is highly specific for 6-oxopurine nucleosides. Cleaves guanosine or inosine to respective bases and sugar-1-phosphate molecules. Involved in purine salvage K00772,K03783 - 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002316 368.0
YYD1_k127_1347159_1 aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004667 357.0
YYD1_k127_1347159_2 Domain of unknown function (DUF2088) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002036 337.0
YYD1_k127_1347159_3 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.00000000000000000000000000000000000000000000000000000000000001363 229.0
YYD1_k127_1347159_4 n-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.00000000000598 76.0
YYD1_k127_1347159_5 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.000001647 58.0
YYD1_k127_1394380_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 428.0
YYD1_k127_1394380_1 Metallopeptidase family M24 K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 301.0
YYD1_k127_1394380_2 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000006286 261.0
YYD1_k127_1394380_3 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000005077 123.0
YYD1_k127_1394380_4 Binds to the 23S rRNA K02876 - - 0.0000000000000000000000000000007146 127.0
YYD1_k127_1394380_5 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.000000000005559 68.0
YYD1_k127_1394380_6 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000007394 63.0
YYD1_k127_14141_0 Ammonium Transporter K03320 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002057 590.0
YYD1_k127_14141_1 Anticodon-binding domain of tRNA K01870 - 6.1.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 507.0
YYD1_k127_14141_10 organic phosphonate transport K02044 - - 0.00000000000000000000000000000000000000000000000000000000000000000003346 244.0
YYD1_k127_14141_11 Glycosyl transferase family group 2 K19003 - 2.4.1.336 0.00000000000000000000000000000000000000000000000000000000873 216.0
YYD1_k127_14141_12 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.000000000000000000000000000000000000000000000000000002255 209.0
YYD1_k127_14141_13 Belongs to the multicopper oxidase YfiH RL5 family K05810 - - 0.000000000000000000000000000000000000000001771 171.0
YYD1_k127_14141_14 Belongs to the P(II) protein family K04751 - - 0.00000000000000000000000000001352 118.0
YYD1_k127_14141_15 PFAM bifunctional deaminase-reductase domain protein - - - 0.0000000000000000000000000009476 119.0
YYD1_k127_14141_16 Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA K09772 - - 0.000000000000000000000004995 115.0
YYD1_k127_14141_17 Belongs to the P(II) protein family K04751 - - 0.0000000000000000001051 88.0
YYD1_k127_14141_18 DUF167 K09131 - - 0.00000000000003624 77.0
YYD1_k127_14141_2 Cysteine desulfurase K04487 - 2.8.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004268 379.0
YYD1_k127_14141_3 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000677 380.0
YYD1_k127_14141_4 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006652 375.0
YYD1_k127_14141_5 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS K03151 - 2.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 372.0
YYD1_k127_14141_6 organic phosphonate transmembrane transporter activity K02042 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 374.0
YYD1_k127_14141_7 Citrate synthase, C-terminal domain K01647 - 2.3.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008914 354.0
YYD1_k127_14141_8 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001363 308.0
YYD1_k127_14141_9 COG0438 Glycosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000007838 259.0
YYD1_k127_142290_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 2.141e-194 624.0
YYD1_k127_142290_1 PFAM Peptidase family M20 M25 M40 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 433.0
YYD1_k127_142290_2 flavin adenine dinucleotide binding K16841 - 5.1.99.3 0.000000000000000000000000000000000000000000000000000000000000000000001675 246.0
YYD1_k127_142290_3 - - - - 0.0000000000000000000000000000000000000000000000000001558 194.0
YYD1_k127_142290_4 PFAM HhH-GPD family protein K10773 - 4.2.99.18 0.0004604 43.0
YYD1_k127_1447411_0 Belongs to the ClpA ClpB family K03696 - - 0.0 1065.0
YYD1_k127_1447411_1 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003142 511.0
YYD1_k127_1447411_10 ECF transporter, substrate-specific component - - - 0.00000000000000000000000000000001598 137.0
YYD1_k127_1447411_11 aminopeptidase activity - - - 0.00000000000000000000001456 103.0
YYD1_k127_1447411_2 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002937 454.0
YYD1_k127_1447411_3 shikimate quinate 5-dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005699 400.0
YYD1_k127_1447411_4 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005135 338.0
YYD1_k127_1447411_5 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003039 347.0
YYD1_k127_1447411_6 Large family of predicted nucleotide-binding domains - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005898 325.0
YYD1_k127_1447411_7 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004987 310.0
YYD1_k127_1447411_8 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000000000000000000613 199.0
YYD1_k127_1447411_9 Mazg nucleotide pyrophosphohydrolase - - - 0.00000000000000000000000000000000000008593 152.0
YYD1_k127_1455989_0 Outer membrane protein, OMP85 family K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002161 261.0
YYD1_k127_1455989_1 Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K02536 GO:0003674,GO:0003824,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0046467,GO:0046493,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 2.3.1.191 0.000000000000000000000000000000000000000000000000000000000000000000002133 247.0
YYD1_k127_1455989_2 Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis K02535,K16363 GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006629,GO:0006643,GO:0006644,GO:0006664,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0008654,GO:0008759,GO:0009058,GO:0009245,GO:0009247,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0019637,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0046467,GO:0046493,GO:0046872,GO:0046914,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901269,GO:1901271,GO:1901576,GO:1903509 3.5.1.108,4.2.1.59 0.00000000000000000000000000000000000000000000007265 190.0
YYD1_k127_1455989_3 Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs K02372 - 4.2.1.59 0.0000000000000000000000000000000000000000001992 162.0
YYD1_k127_1455989_4 - - - - 0.000000000000000000000004409 119.0
YYD1_k127_1455989_5 PFAM Outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000000001144 77.0
YYD1_k127_1455989_6 PFAM Outer membrane chaperone Skp (OmpH) K06142 - - 0.0000000073 67.0
YYD1_k127_1464003_0 2-oxoisovalerate dehydrogenase K00167,K21417 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 404.0
YYD1_k127_1464003_1 Dehydrogenase E1 component K00166 - 1.2.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004077 362.0
YYD1_k127_1464003_2 Dihydrolipoyl dehydrogenase K00382 - 1.8.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007167 278.0
YYD1_k127_1464003_3 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627,K09699 - 2.3.1.12,2.3.1.168 0.000000000000000000000000000000000000000000000000009461 192.0
YYD1_k127_1475751_0 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756,K01857 - 4.3.2.2,5.5.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009101 500.0
YYD1_k127_1475751_1 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007795 452.0
YYD1_k127_1475751_2 Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001222 378.0
YYD1_k127_1475751_3 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000222 276.0
YYD1_k127_1475751_4 protocatechuate 3,4-dioxygenase activity K00448 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000004365 189.0
YYD1_k127_1566275_0 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 531.0
YYD1_k127_1566275_1 Divergent polysaccharide deacetylase K09798 - - 0.00000000000000000000000000000000000000000000000000001802 199.0
YYD1_k127_1566275_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.0000000000000000000000001083 113.0
YYD1_k127_1579920_0 protease-associated PA domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 606.0
YYD1_k127_1579920_1 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009227 378.0
YYD1_k127_1579920_2 Belongs to the ABC transporter superfamily K02031,K02032,K13896,K19229,K19230 GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005524,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008144,GO:0008150,GO:0008324,GO:0008519,GO:0009987,GO:0015075,GO:0015101,GO:0015203,GO:0015489,GO:0015672,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0017076,GO:0022857,GO:0030001,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034220,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071804,GO:0071805,GO:0072488,GO:0097159,GO:0097367,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901363,GO:1902047 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 356.0
YYD1_k127_1579920_3 COG4608 ABC-type oligopeptide transport system, ATPase component K02032 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042 328.0
YYD1_k127_1579920_4 helix_turn_helix ASNC type K03718 - - 0.0000000000000000000000000214 125.0
YYD1_k127_1602550_0 Protease prsW family - - - 0.0000000000000007683 89.0
YYD1_k127_1602550_1 helix_turn_helix, Lux Regulon - - - 0.00000000000002016 80.0
YYD1_k127_1603292_0 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 376.0
YYD1_k127_1603292_1 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001076 356.0
YYD1_k127_1603292_2 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006396 347.0
YYD1_k127_1603292_3 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006901 324.0
YYD1_k127_1603292_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000002656 193.0
YYD1_k127_1603292_5 extracellular solute-binding protein, family 5 K02035 - - 0.000000000000001318 79.0
YYD1_k127_1603292_6 Helix-turn-helix domain - - - 0.00000009256 58.0
YYD1_k127_1605875_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.717e-294 925.0
YYD1_k127_1605875_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009253 417.0
YYD1_k127_1605875_10 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000000000000000000000000000000000442 211.0
YYD1_k127_1605875_11 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000002745 180.0
YYD1_k127_1605875_12 Belongs to the phosphoglycerate mutase family K22305 - 3.1.3.3 0.0000000000000000000000000000000000000000000006416 180.0
YYD1_k127_1605875_13 PFAM Chorismate mutase of the AroH class K06208 - 5.4.99.5 0.0000000000000000000000000000000001376 139.0
YYD1_k127_1605875_14 Transcriptional regulator - - - 0.000000000000000000000000000000000188 147.0
YYD1_k127_1605875_15 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0007059,GO:0008150,GO:0008152,GO:0009295,GO:0009330,GO:0009987,GO:0016043,GO:0032991,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.99.1.3 0.0000000000000000000000000007185 120.0
YYD1_k127_1605875_16 - - - - 0.00000000000000000000001465 108.0
YYD1_k127_1605875_17 Domain of unknown function (DUF4129) - - - 0.00000000000003868 86.0
YYD1_k127_1605875_18 - - - - 0.00000000000009379 83.0
YYD1_k127_1605875_19 zinc metalloprotease - - - 0.000008484 57.0
YYD1_k127_1605875_2 Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 419.0
YYD1_k127_1605875_20 Acetyltransferase (GNAT) family - - - 0.0001868 54.0
YYD1_k127_1605875_3 ATPase associated with various cellular activities, AAA_3 K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004161 398.0
YYD1_k127_1605875_4 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735,K13829 - 2.7.1.71,4.2.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004854 379.0
YYD1_k127_1605875_5 Tripartite ATP-independent periplasmic transporter, DctM component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001038 289.0
YYD1_k127_1605875_6 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001105 289.0
YYD1_k127_1605875_7 Threonyl and Alanyl tRNA synthetase second additional domain K07050 - - 0.00000000000000000000000000000000000000000000000000000000000000001419 244.0
YYD1_k127_1605875_8 MFS/sugar transport protein K03292 - - 0.000000000000000000000000000000000000000000000000000000000001028 226.0
YYD1_k127_1605875_9 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.0000000000000000000000000000000000000000000000000000000003179 216.0
YYD1_k127_1635433_0 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003612 366.0
YYD1_k127_1635433_1 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000007817 267.0
YYD1_k127_1635433_2 Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps K01749 GO:0003674,GO:0003824,GO:0004418,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000009296 259.0
YYD1_k127_1635433_3 Uroporphyrinogen-III synthase HemD K01719 - 4.2.1.75 0.00000000000000000000000000000000000006531 156.0
YYD1_k127_1671800_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00283 - 1.4.4.2 8.364e-205 662.0
YYD1_k127_1671800_1 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00282 - 1.4.4.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003345 514.0
YYD1_k127_1671800_2 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000001818 263.0
YYD1_k127_1671800_3 lactoylglutathione lyase activity K01759 - 4.4.1.5 0.00000000000000000000000000000000000000000000008529 172.0
YYD1_k127_1671800_4 Is also involved in protein lipoylation via its role as an octanoyl lipoyl carrier protein intermediate K02437 GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009987,GO:0010467,GO:0016053,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0051604,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901576 - 0.0000000000000000000000000000000000000000004276 160.0
YYD1_k127_1671800_5 threonine dehydratase K01754 - 4.3.1.19 0.00000000000000002015 91.0
YYD1_k127_1677059_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008523 537.0
YYD1_k127_1677059_1 PFAM Multi antimicrobial extrusion protein MatE K03327 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 472.0
YYD1_k127_1677059_2 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006673 407.0
YYD1_k127_1677059_3 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009737 316.0
YYD1_k127_1677059_4 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001817 285.0
YYD1_k127_1677059_5 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000003161 184.0
YYD1_k127_1677059_6 Ferredoxin - - - 0.00000000000000000000000000000000000000000003114 163.0
YYD1_k127_1677059_7 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K06187,K09747 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.00000000000000000000000000001574 121.0
YYD1_k127_1677059_8 - - - - 0.00000000000001914 76.0
YYD1_k127_1717306_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 3.951e-234 736.0
YYD1_k127_1717306_1 Bacterial protein of unknown function (DUF881) - - - 0.000000000000000000000000000000005707 138.0
YYD1_k127_1717306_2 Metal-sensitive transcriptional repressor K21600 - - 0.00000000000001215 78.0
YYD1_k127_1726513_0 elongation factor G K02355 - - 2.059e-226 721.0
YYD1_k127_1726513_1 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000695 544.0
YYD1_k127_1726513_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001452 504.0
YYD1_k127_1726513_3 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007139 362.0
YYD1_k127_1726513_4 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000005399 275.0
YYD1_k127_1726513_5 tRNA synthetases class I (K) K04566 - 6.1.1.6 0.00000000000000005309 83.0
YYD1_k127_1729112_0 Response regulator receiver - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001523 252.0
YYD1_k127_1729112_1 PFAM Vitamin K epoxide reductase - - - 0.000000000000000000000000000000000000000247 162.0
YYD1_k127_1729112_2 Involved in the degradation of specific anti-sigma factors - - - 0.000000000000000000000000000001229 129.0
YYD1_k127_1729112_3 - - - - 0.000000000000000009903 86.0
YYD1_k127_1729112_4 Protein of unknown function (DUF3795) - - - 0.0003183 51.0
YYD1_k127_1737821_0 glutamate synthase alpha subunit domain protein K00265 - 1.4.1.13,1.4.1.14 0.0 1133.0
YYD1_k127_1749575_0 Pyridoxal-dependent decarboxylase conserved domain K01593 - 4.1.1.105,4.1.1.28 7.548e-198 629.0
YYD1_k127_1749575_1 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001488 273.0
YYD1_k127_1749575_2 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000000000000000000000000002362 239.0
YYD1_k127_1749575_3 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000004645 196.0
YYD1_k127_1749575_4 Phosphoribosyl transferase domain K07100 - - 0.000000000000000000000000000000000000002137 168.0
YYD1_k127_1749575_5 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000526 127.0
YYD1_k127_1749575_6 Fungal trichothecene efflux pump (TRI12) - - - 0.0009906 45.0
YYD1_k127_1766998_0 ABC-type sugar transport system, permease component K17246 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002422 270.0
YYD1_k127_1766998_1 Protein of unknown function (DUF4127) - - - 0.0000000000000000000000000000000000000001415 165.0
YYD1_k127_1766998_2 Binding-protein-dependent transport system inner membrane component K17242,K17245 - - 0.0000000000000000000000000000000000000372 146.0
YYD1_k127_1774947_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002911 395.0
YYD1_k127_1774947_1 negative regulation of translational initiation K05554,K15885 - - 0.000000000000000000000000005414 117.0
YYD1_k127_1774947_2 Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di-O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains K00311,K17830 - 1.3.1.101,1.3.7.11,1.5.5.1 0.0001586 53.0
YYD1_k127_1861519_0 Polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 466.0
YYD1_k127_1861519_1 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004144 387.0
YYD1_k127_1861519_2 Aminotransferase class I and II K10907 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 397.0
YYD1_k127_1861519_3 Belongs to the DegT DnrJ EryC1 family K18653 GO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009058,GO:0009987,GO:0016740,GO:0016769,GO:0016999,GO:0017000,GO:0017144,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044249,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363 2.6.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003449 324.0
YYD1_k127_1861519_4 Nucleotidyl transferase K00973 - 2.7.7.24 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001953 316.0
YYD1_k127_1861519_5 methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000276 211.0
YYD1_k127_1861519_6 RelE-like toxin of type II toxin-antitoxin system HigB K07334 - - 0.00000000000000006875 82.0
YYD1_k127_1861519_7 Dehydrogenase E1 component K00161,K21416 - 1.2.4.1 0.000000009497 59.0
YYD1_k127_1903040_0 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 520.0
YYD1_k127_1903040_1 AI-2E family transporter K03548 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944 - 0.0000000000000000000000000000000000000000003338 171.0
YYD1_k127_1903731_0 Alpha/beta hydrolase family K01259 - 3.4.11.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001278 513.0
YYD1_k127_1903731_1 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006908 332.0
YYD1_k127_1903731_2 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000001725 224.0
YYD1_k127_1903731_3 PFAM thioesterase superfamily K07107 - - 0.000000000000000000000000000001837 126.0
YYD1_k127_1913974_0 Belongs to the thiolase family K00626,K02615 - 2.3.1.174,2.3.1.223,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 559.0
YYD1_k127_1913974_1 Enoyl-CoA hydratase/isomerase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005267 387.0
YYD1_k127_1913974_2 COG1024 Enoyl-CoA hydratase carnithine racemase K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000171 326.0
YYD1_k127_1913974_3 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001324 299.0
YYD1_k127_1913974_4 Ethyl tert-butyl ether degradation - - - 0.00000000000000000000000000000000004778 136.0
YYD1_k127_1913974_5 membrane K08976 - - 0.00000000000000000000000001541 126.0
YYD1_k127_1913974_6 n-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.000000000005302 78.0
YYD1_k127_1913974_7 Lysylphosphatidylglycerol synthase TM region - - - 0.0000003314 62.0
YYD1_k127_1913974_8 type IV pilus assembly PilZ - - - 0.0003807 53.0
YYD1_k127_1945988_0 Glycosyl hydrolase 36 superfamily, catalytic domain K00702,K13688 - 2.4.1.20 0.0 1993.0
YYD1_k127_1960464_0 3-hydroxyacyl-CoA dehydrogenase K07516 - 1.1.1.35 9.127e-263 841.0
YYD1_k127_1960464_1 PFAM peptidase S45 penicillin amidase K01434 - 3.5.1.11 1.17e-210 682.0
YYD1_k127_1960464_2 Multicopper oxidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005532 426.0
YYD1_k127_1960464_3 transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001212 349.0
YYD1_k127_1960464_4 PFAM PrkA AAA domain K07180 - - 0.0000000000000000000000000000000000000000000000000000000000000000006795 249.0
YYD1_k127_1960464_5 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family - - - 0.0000000000000000000000000000000000000000000000000000000000000001799 233.0
YYD1_k127_1960464_6 iron dependent repressor K03709 - - 0.0000000000000000000000000000000000000000000000000000379 203.0
YYD1_k127_1960464_7 PFAM Bacterial regulatory proteins, tetR family - - - 0.000000000000000000000000000000000003929 149.0
YYD1_k127_1960464_8 PFAM SpoVR like protein K06415 - - 0.00000000000000000000000000000000003341 140.0
YYD1_k127_1960464_9 Belongs to the UPF0229 family K09786 - - 0.0000000003393 72.0
YYD1_k127_2034266_0 PFAM acetyl-CoA hydrolase transferase K01067 - 3.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001247 416.0
YYD1_k127_2034266_1 alanine dehydrogenase activity K00259 - 1.4.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 308.0
YYD1_k127_2034266_2 PFAM NAD dependent epimerase dehydratase family K08679 - 5.1.3.6 0.0002336 46.0
YYD1_k127_2038993_0 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K00856,K10710,K22026 - 2.7.1.15,2.7.1.20,2.7.1.213,2.7.1.218,2.7.1.73 0.000000000000000000000000000000000000000000000000000000000000001509 228.0
YYD1_k127_2038993_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000006866 106.0
YYD1_k127_2038993_3 N-acetylmuramoyl-L-alanine amidase K01448 - 3.5.1.28 0.0000000000000000007233 96.0
YYD1_k127_2045516_0 PFAM Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005619 433.0
YYD1_k127_2045516_1 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 366.0
YYD1_k127_2045516_2 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006079 363.0
YYD1_k127_2045516_3 Ribulose-phosphate 3 epimerase family K01783 GO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0043167,GO:0043169,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575 5.1.3.1 0.0000000000000000000000000000000000000000000000000000000000000001197 248.0
YYD1_k127_2045516_4 histone deacetylase - - - 0.0000000000000000000000000000000000000003095 154.0
YYD1_k127_2052785_0 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit K02117 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044464,GO:0044769,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0099131,GO:0099132,GO:1902600 3.6.3.14,3.6.3.15 4.487e-252 789.0
YYD1_k127_2052785_1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit K02118 - - 2.006e-226 713.0
YYD1_k127_2052785_2 Produces ATP from ADP in the presence of a proton gradient across the membrane K02120 - - 0.0000000000000000000000000000000000000000000000000000000001399 210.0
YYD1_k127_2052785_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02122 - - 0.00000000000000000006758 93.0
YYD1_k127_2052785_4 subunit (C K02119 - - 0.000003476 55.0
YYD1_k127_2085637_0 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267 438.0
YYD1_k127_2085637_1 metal-dependent phosphohydrolase HD region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000211 260.0
YYD1_k127_2085637_2 RNA polymerase sigma-54 factor K03092 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000008224 93.0
YYD1_k127_2090526_0 Glycoside hydrolase family 3 K01207 - 3.2.1.52 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007336 370.0
YYD1_k127_2090526_1 SIS domain K00820 - 2.6.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005138 290.0
YYD1_k127_2090526_2 Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling K09001 - 2.7.1.170 0.000000000000000000000000000000000000000000000000000000000000000000000000004412 259.0
YYD1_k127_2090526_3 Methyltransferase domain - - - 0.000000000000000000000000000000000004523 146.0
YYD1_k127_2141517_0 ABC transporter substrate-binding protein K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001451 330.0
YYD1_k127_2141517_1 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000002215 220.0
YYD1_k127_2141517_2 Amidohydrolase family - - - 0.0000000000000000000000311 101.0
YYD1_k127_21462_0 ABC transporter K06147,K18890 - - 2.173e-206 685.0
YYD1_k127_21462_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 578.0
YYD1_k127_21462_10 lactoylglutathione lyase activity - - - 0.0000000000000001246 83.0
YYD1_k127_21462_11 Ribosome-associated heat shock protein implicated in recycling of 50S subunit - - - 0.0000000000002384 78.0
YYD1_k127_21462_12 Septum formation initiator K13052 - - 0.00000006797 63.0
YYD1_k127_21462_13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15975 - - 0.0000002746 53.0
YYD1_k127_21462_2 ABC transporter transmembrane K18889 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005045 563.0
YYD1_k127_21462_3 Belongs to the UPF0271 (lamB) family K07160 - - 0.000000000000000000000000000000000000000000000000000000000000000001508 235.0
YYD1_k127_21462_4 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000007862 171.0
YYD1_k127_21462_5 peptidyl-prolyl cis-trans isomerase activity K03769,K03771 - 5.2.1.8 0.000000000000000000000000000000000000000007287 167.0
YYD1_k127_21462_6 S1 RNA binding domain protein K07571 - - 0.00000000000000000000000000000000000001318 147.0
YYD1_k127_21462_7 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.0000000000000000000000000006644 119.0
YYD1_k127_21462_8 Thioredoxin - - - 0.0000000000000000000000003228 108.0
YYD1_k127_21462_9 PFAM Prenyltransferase squalene oxidase - - - 0.000000000000000001679 98.0
YYD1_k127_2191793_0 Dehydratase family K01687 - 4.2.1.9 3.158e-243 768.0
YYD1_k127_2191793_1 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002336 535.0
YYD1_k127_2191793_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001438 422.0
YYD1_k127_2191793_3 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002093 395.0
YYD1_k127_2191793_4 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 - 4.2.1.33,4.2.1.35 0.000000000000000000000000000000000000000000000000000001802 214.0
YYD1_k127_2191793_5 protocatechuate 3,4-dioxygenase activity K03381 - 1.13.11.1 0.000000000000000000000000000000000000000001938 164.0
YYD1_k127_2191793_6 Belongs to the UPF0312 family - - - 0.000000000000000000000000000000000002546 149.0
YYD1_k127_2191793_7 TrpR family protein YerC YecD - - - 0.00000000000000000000000000000053 124.0
YYD1_k127_2208038_0 Penicillin-binding Protein K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 563.0
YYD1_k127_2208038_1 transcriptional regulatory protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004401 283.0
YYD1_k127_2208038_2 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.000000000007635 68.0
YYD1_k127_2208038_3 - - - - 0.0008605 49.0
YYD1_k127_2235111_0 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004178 331.0
YYD1_k127_2235111_1 Belongs to the phosphoglycerate kinase family K00927,K01803 - 2.7.2.3,5.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001721 282.0
YYD1_k127_2235111_2 Bacterial protein of unknown function (DUF881) - - - 0.0000000000000000000000000000000000000005537 158.0
YYD1_k127_2235111_3 small basic protein - - - 0.0000000000000000000000000000002869 127.0
YYD1_k127_2235111_4 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.00000000000000000000000000003117 118.0
YYD1_k127_2237302_0 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000000000004997 236.0
YYD1_k127_2237302_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000002677 183.0
YYD1_k127_2237302_2 Cytochrome c3 - - - 0.000000000000000003064 92.0
YYD1_k127_2237302_3 response regulator - - - 0.00006766 51.0
YYD1_k127_2265625_0 maltose binding K15770,K17237 - - 2.577e-200 631.0
YYD1_k127_2265625_1 arylsulfatase activity K01138 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000587 535.0
YYD1_k127_2265625_2 Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions K00850,K21071 - 2.7.1.11,2.7.1.90 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004304 415.0
YYD1_k127_2265625_3 Belongs to the hyi family K01816 - 5.3.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 312.0
YYD1_k127_2295542_0 Formyl transferase, C-terminal domain K00604 GO:0003674,GO:0003824,GO:0004479,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006413,GO:0006464,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0016742,GO:0019538,GO:0019988,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036211,GO:0043043,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0071704,GO:0071951,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003295 319.0
YYD1_k127_2295542_1 helicase superfamily c-terminal domain K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000007649 312.0
YYD1_k127_2295542_2 Putative neutral zinc metallopeptidase K06973 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000385 254.0
YYD1_k127_2295542_3 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008463,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564 3.5.1.88 0.00000000000000000000000000000000000000000006796 167.0
YYD1_k127_2304552_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 1.059e-243 768.0
YYD1_k127_2304552_1 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0018130,GO:0019438,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000005863 254.0
YYD1_k127_2304552_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000002182 220.0
YYD1_k127_2304552_3 S4 domain K14761 - - 0.000000000006527 69.0
YYD1_k127_2304552_4 Protein of unknown function (DUF721) - - - 0.00000002113 62.0
YYD1_k127_2304552_5 Domain of unknown function (DUF370) - - - 0.00000004005 59.0
YYD1_k127_2315023_0 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS K01881 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 6.1.1.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 595.0
YYD1_k127_2315023_1 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 433.0
YYD1_k127_2315023_2 ATPases associated with a variety of cellular activities - - - 0.000000000000000000000000000000000002697 140.0
YYD1_k127_2315080_0 With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA K02609 - 1.14.13.149 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001289 369.0
YYD1_k127_2315080_1 COGs COG1253 Hemolysins and related protein containing CBS domains - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002938 319.0
YYD1_k127_2315080_2 PA domain K19701 - 3.4.11.10,3.4.11.6 0.00000000000000000000000000000000000000000000000000000000000008956 231.0
YYD1_k127_2315080_3 Phenylacetate-CoA oxygenase K02611 - 1.14.13.149 0.00000000000000000000000000000000000000000000000000000000006003 215.0
YYD1_k127_2315080_4 Pfam:DUF59 K02612 - - 0.0000000000000000000000000000000001882 147.0
YYD1_k127_2315080_5 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000005648 102.0
YYD1_k127_2315080_6 Phenylacetate-CoA oxygenase K02610 - - 0.000000000000001099 81.0
YYD1_k127_2315080_7 DinB family - - - 0.0000004838 58.0
YYD1_k127_2315080_8 DinB family - - - 0.00005334 55.0
YYD1_k127_2352303_0 Belongs to the peptidase S16 family K01338,K04076 - 3.4.21.53 1.017e-240 761.0
YYD1_k127_2352303_1 ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner K06942 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 370.0
YYD1_k127_2352303_2 PFAM GGDEF domain containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002278 327.0
YYD1_k127_2352303_3 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000001069 174.0
YYD1_k127_2352303_4 binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000001106 147.0
YYD1_k127_2352303_5 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000000000000000000000005831 133.0
YYD1_k127_2352303_6 Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit K02963 - - 0.000000000000000000000000005531 112.0
YYD1_k127_2352303_7 Binds together with S18 to 16S ribosomal RNA K02990 - - 0.00000000000000002555 98.0
YYD1_k127_2359881_0 Bacterial extracellular solute-binding protein K17244 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006394 401.0
YYD1_k127_2359881_1 Binding-protein-dependent transport system inner membrane component K17242,K17245 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000372 332.0
YYD1_k127_2359881_2 Glycosyl hydrolase family 20, catalytic domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 315.0
YYD1_k127_2359881_3 Binding-protein-dependent transport system inner membrane component K17246 - - 0.00000000000000000000000000001367 123.0
YYD1_k127_2393923_0 GXGXG motif - - - 2.766e-244 773.0
YYD1_k127_2411805_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.0 1479.0
YYD1_k127_2411805_1 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 334.0
YYD1_k127_2411805_2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 331.0
YYD1_k127_2411805_3 Participates in transcription elongation, termination and antitermination K02601 - - 0.00000000000000000000000000000000000000000000000000000000000000005831 231.0
YYD1_k127_2411805_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors K02867 - - 0.000000000000000000000000000000000000000000000000000000000000004099 218.0
YYD1_k127_2411805_5 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 - - 0.0000000000000000000000000000000000000000000209 169.0
YYD1_k127_2411805_6 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.0000000000000000000000000000000000000000004675 161.0
YYD1_k127_2411805_7 Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation K03073 - - 0.00000214 54.0
YYD1_k127_2422351_0 fatty acid desaturase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003147 368.0
YYD1_k127_2422351_1 Metallo-beta-lactamase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 295.0
YYD1_k127_2422351_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.0000000000000000000000000000000000000004659 152.0
YYD1_k127_2422351_3 Peptidase family M28 - - - 0.0000000000001878 80.0
YYD1_k127_2422485_0 Acyl-CoA dehydrogenase, C-terminal domain K16173 - 1.3.99.32 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008292 529.0
YYD1_k127_2422485_1 TIGRFAM acetylornithine deacetylase or succinyl- diaminopimelate desuccinylase K01439 - 3.5.1.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008853 295.0
YYD1_k127_2422485_2 succinyl-diaminopimelate desuccinylase activity K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000001869 237.0
YYD1_k127_2422485_3 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000008524 196.0
YYD1_k127_2422485_4 Cytochrome c biogenesis protein K06196 - - 0.000000000000000000000000000000000000000000000000001143 196.0
YYD1_k127_2422485_5 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000007954 176.0
YYD1_k127_2422485_6 Catalyzes the cleavage of the N-glycosidic bond of deoxyribonucleoside 5'-monophosphates to yield deoxyribose 5- phosphate and a purine or pyrimidine base - - - 0.00000000000000000000002599 112.0
YYD1_k127_2422485_7 Predicted ATPase of the ABC class - - - 0.00000000000000001278 90.0
YYD1_k127_2422485_8 adenylyl cyclase CyaB K01524 - 3.6.1.11,3.6.1.40 0.00000000000002562 84.0
YYD1_k127_2425565_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005198 399.0
YYD1_k127_2425565_1 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001994 301.0
YYD1_k127_2425565_10 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000000000000000002 167.0
YYD1_k127_2425565_11 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 - - 0.000000000000000000000000000000000000001051 151.0
YYD1_k127_2425565_12 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.000000000000000000000000000000000000005826 148.0
YYD1_k127_2425565_13 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000000001506 141.0
YYD1_k127_2425565_14 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.0000000000000000000000000000002362 126.0
YYD1_k127_2425565_15 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000000001235 123.0
YYD1_k127_2425565_16 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000001437 105.0
YYD1_k127_2425565_17 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.00000000000000002132 93.0
YYD1_k127_2425565_18 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000003585 75.0
YYD1_k127_2425565_19 Belongs to the universal ribosomal protein uL29 family K02904 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000004384 53.0
YYD1_k127_2425565_2 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002423 256.0
YYD1_k127_2425565_3 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.000000000000000000000000000000000000000000000000000000000000000000007781 238.0
YYD1_k127_2425565_4 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000002811 231.0
YYD1_k127_2425565_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000001388 223.0
YYD1_k127_2425565_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000002085 214.0
YYD1_k127_2425565_7 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000069 193.0
YYD1_k127_2425565_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 - - 0.0000000000000000000000000000000000000000000000000003858 190.0
YYD1_k127_2425565_9 One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome K02926 - - 0.00000000000000000000000000000000000000000000000000247 198.0
YYD1_k127_2430098_0 Domain of unknown function (DUF3536) - - - 3.539e-197 644.0
YYD1_k127_2430098_1 Belongs to the glycosyl hydrolase 57 family K03406,K16149 GO:0000271,GO:0003674,GO:0003824,GO:0003844,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0055114,GO:0071704,GO:1901576 2.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002263 531.0
YYD1_k127_2430098_2 PFAM Glycosyl transferases group 1 K13057 - 2.4.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004714 484.0
YYD1_k127_2430098_3 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002753 473.0
YYD1_k127_2430098_4 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000008428 124.0
YYD1_k127_2430098_5 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087 GO:0003674,GO:0003824,GO:0004805,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0034637,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0046351,GO:0071704,GO:1901576 3.1.3.12 0.0000000000000000006866 90.0
YYD1_k127_2433834_0 AMP-binding enzyme K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 442.0
YYD1_k127_2433834_1 response regulator - - - 0.000000000000000000000000000000000000000000000000000000000000003797 230.0
YYD1_k127_2433834_2 Histidine kinase - - - 0.00000000000000000000008955 111.0
YYD1_k127_2433834_3 Ornithine cyclodeaminase/mu-crystallin family K01750,K18258,K19244 - 1.4.1.1,1.5.1.25,4.3.1.12 0.00001554 50.0
YYD1_k127_2468691_0 Ring hydroxylating alpha subunit (catalytic domain) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002258 313.0
YYD1_k127_2468691_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002073 280.0
YYD1_k127_2468691_2 thiamine-containing compound biosynthetic process K04102 - 4.1.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004918 275.0
YYD1_k127_2468691_3 COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit K00499,K16319 - 1.14.12.1,1.14.15.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000001668 278.0
YYD1_k127_2468691_4 - - - - 0.000000000000000000000000000000000000000000001971 177.0
YYD1_k127_2468691_5 COG5517 Small subunit of phenylpropionate dioxygenase - - - 0.000000000000000000000000000003734 125.0
YYD1_k127_2468691_6 dioxygenase beta subunit K16320 - 1.14.12.1 0.00000000000000000001331 98.0
YYD1_k127_2468691_7 Auxin binding protein - - - 0.000000000000255 71.0
YYD1_k127_2488956_0 COG COG1459 Type II secretory pathway component PulF Cell motility and secretion Intracellular trafficking and secretion K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001157 256.0
YYD1_k127_2488956_1 O-Antigen ligase K18814 - - 0.00000000000000000000003911 113.0
YYD1_k127_2488956_2 Histidine Phosphotransfer domain - - - 0.0000000157 58.0
YYD1_k127_2488956_3 Tfp pilus assembly protein - - - 0.000009517 57.0
YYD1_k127_2488956_4 Prokaryotic N-terminal methylation motif K02650 - - 0.0008296 49.0
YYD1_k127_2498328_0 Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol K00919 - 2.7.1.148 0.000000000000000000000000000000000000000000000000000000000000000001301 239.0
YYD1_k127_2498328_1 MobA-like NTP transferase domain - - - 0.0000000000000000000000000000000000000000000001384 177.0
YYD1_k127_2498328_2 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.000000000000000000000000002167 120.0
YYD1_k127_2528193_0 Belongs to the PdxA family K00097,K22024 - 1.1.1.262,1.1.1.408,1.1.1.409 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006968 344.0
YYD1_k127_2528193_1 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002578 263.0
YYD1_k127_2528193_2 Protein of unknown function (DUF2652) - - - 0.000000000000000000000000000000000000000000000000000000000000000000008155 252.0
YYD1_k127_2528193_3 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000001476 103.0
YYD1_k127_2528193_4 protein kinase activity - - - 0.0003385 53.0
YYD1_k127_2597033_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 2.357e-299 941.0
YYD1_k127_2597033_1 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 604.0
YYD1_k127_2597033_2 PFAM Type II secretion system protein E K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006476 492.0
YYD1_k127_2597033_3 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004865 404.0
YYD1_k127_2597033_4 Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins K01358 - 3.4.21.92 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005992 288.0
YYD1_k127_2597033_5 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000000007679 242.0
YYD1_k127_2597033_6 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.00000000000000000000002997 105.0
YYD1_k127_2597033_7 HEAT repeats - - - 0.000000000003284 78.0
YYD1_k127_2615015_0 Type IV pilus assembly protein PilM; K02662 - - 0.00000000000000000000000000000000001726 148.0
YYD1_k127_2615015_1 pilus organization - - - 0.000000000001242 82.0
YYD1_k127_2615015_2 - - - - 0.00001115 59.0
YYD1_k127_2615015_3 PFAM Fimbrial assembly family protein K02663 - - 0.0001952 50.0
YYD1_k127_2620195_0 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 1.739e-217 683.0
YYD1_k127_2620195_1 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 GO:0000271,GO:0003674,GO:0003824,GO:0004373,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576 2.4.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006378 456.0
YYD1_k127_2620195_10 peroxiredoxin activity - - - 0.00000000000000000000000000000000000000000000000000000002143 201.0
YYD1_k127_2620195_11 Metallo-beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000001074 181.0
YYD1_k127_2620195_12 Zincin-like metallopeptidase - - - 0.0000000000000000000000000008496 119.0
YYD1_k127_2620195_13 LUD domain K00782 - - 0.0000000000000000004768 98.0
YYD1_k127_2620195_14 Conserved Protein - - - 0.000000000000000001483 88.0
YYD1_k127_2620195_2 MOFRL family K11529 - 2.7.1.165 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000592 443.0
YYD1_k127_2620195_3 PFAM aminotransferase class V K04127 - 5.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001723 434.0
YYD1_k127_2620195_4 Pfam:DUF162 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009808 425.0
YYD1_k127_2620195_5 galactose-1-phosphate uridylyltransferase K00965 - 2.7.7.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007466 385.0
YYD1_k127_2620195_6 Aminotransferase class-V K00830 - 2.6.1.44,2.6.1.45,2.6.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004626 368.0
YYD1_k127_2620195_7 signal peptide peptidase SppA, 36K type K04773 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 354.0
YYD1_k127_2620195_8 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008152 299.0
YYD1_k127_2620195_9 Cysteine-rich domain K18928 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000005912 265.0
YYD1_k127_2637036_0 6-phosphogluconate dehydrogenase K00033 - 1.1.1.343,1.1.1.44 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003371 420.0
YYD1_k127_2637036_1 TIGRFAM phosphate ABC transporter, phosphate-binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001055 407.0
YYD1_k127_2637036_10 CoA binding domain K06929 - - 0.00000000000000000000000000000000000002195 149.0
YYD1_k127_2637036_11 Transcriptional regulatory protein, C terminal K07776 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0006355,GO:0008150,GO:0009405,GO:0009889,GO:0010468,GO:0010556,GO:0010565,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0031323,GO:0031326,GO:0044419,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051252,GO:0051704,GO:0060255,GO:0062012,GO:0065007,GO:0080090,GO:0080134,GO:0097159,GO:1901363,GO:1902882,GO:1903506,GO:2000112,GO:2001141 - 0.0000000000000000000005588 109.0
YYD1_k127_2637036_12 glutaredoxin-like protein, YruB-family - - - 0.000000000119 63.0
YYD1_k127_2637036_2 TIGRFAM phosphate ABC transporter, phosphate-binding protein K02040 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 405.0
YYD1_k127_2637036_3 Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system K02036 - 3.6.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001886 347.0
YYD1_k127_2637036_4 probably responsible for the translocation of the substrate across the membrane K02037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002146 319.0
YYD1_k127_2637036_5 radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 302.0
YYD1_k127_2637036_6 TIGRFAM phosphate ABC transporter K02038 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003466 307.0
YYD1_k127_2637036_7 Plays a role in the regulation of phosphate uptake K02039 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009892,GO:0010563,GO:0010966,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0032879,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0042802,GO:0042803,GO:0043269,GO:0043271,GO:0044070,GO:0044424,GO:0044464,GO:0045936,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051174,GO:0065007,GO:1903792,GO:1903795,GO:1903796,GO:1903959,GO:1903960,GO:2000185,GO:2000186 - 0.00000000000000000000000000000000000000000000000001747 194.0
YYD1_k127_2637036_8 PFAM glucosamine galactosamine-6-phosphate isomerase K01057 - 3.1.1.31 0.0000000000000000000000000000000000000000000000000312 196.0
YYD1_k127_2637036_9 YbaK prolyl-tRNA synthetase associated region - - - 0.000000000000000000000000000000000000000000368 169.0
YYD1_k127_2643689_0 ABC-type dipeptide transport system periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004833 502.0
YYD1_k127_2643689_1 COGs COG0601 ABC-type dipeptide oligopeptide nickel transport systems permease components K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001242 370.0
YYD1_k127_2643689_2 PFAM Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000000000000000000000000000000000149 177.0
YYD1_k127_2649370_0 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007217 606.0
YYD1_k127_2649370_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004455,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009987,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0022607,GO:0036094,GO:0042802,GO:0043167,GO:0043169,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.86 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008894 457.0
YYD1_k127_2649370_2 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.00000000000000000000000000000000000000000000000000526 184.0
YYD1_k127_2649370_3 Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.000000000000000000000000000000000000000000008661 167.0
YYD1_k127_2660695_0 Heavy-metal-associated domain K17686 - 3.6.3.54 4.56e-261 825.0
YYD1_k127_2660695_1 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) K01560 - 3.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000001091 254.0
YYD1_k127_2660695_2 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.00000000000000000000000000000000000000000298 158.0
YYD1_k127_2660695_3 - - - - 0.000000000000002244 79.0
YYD1_k127_2660695_4 Staphylococcal nuclease homologues K01174 - 3.1.31.1 0.0000000002044 66.0
YYD1_k127_2698274_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012 500.0
YYD1_k127_2698274_1 Chromate transporter K07240 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211 430.0
YYD1_k127_2698274_10 Domain in cystathionine beta-synthase and other proteins. - - - 0.000000000001179 79.0
YYD1_k127_2698274_2 VIT family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001519 396.0
YYD1_k127_2698274_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.000000000000000000000000000000000000000000000004079 186.0
YYD1_k127_2698274_4 Hydrolase of the alpha beta-hydrolase K07020 - - 0.0000000000000000000000000000000000000001239 161.0
YYD1_k127_2698274_5 Carboxymuconolactone decarboxylase family - - - 0.000000000000000000000001654 106.0
YYD1_k127_2698274_6 Protein of unknown function (DUF1232) - - - 0.00000000000000000000271 98.0
YYD1_k127_2698274_7 Carboxymuconolactone decarboxylase family - - - 0.0000000000000000001623 91.0
YYD1_k127_2698274_8 COG0517 FOG CBS domain - - - 0.000000000000006637 87.0
YYD1_k127_2698274_9 PFAM diacylglycerol kinase catalytic region - - - 0.0000000000002517 74.0
YYD1_k127_274114_0 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003451 531.0
YYD1_k127_274114_1 PFAM ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 467.0
YYD1_k127_274114_2 protein (some members contain a von Willebrand factor type A (vWA) domain) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 344.0
YYD1_k127_274114_3 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009974 273.0
YYD1_k127_274114_4 von Willebrand factor, type A K07114 - - 0.000000000000000000000000000000000000000000000000000000000000004706 226.0
YYD1_k127_274114_5 Von Willebrand factor type A K07114 - - 0.000000000000000000000000000000000000000000329 179.0
YYD1_k127_274114_6 Trypsin - - - 0.0000000000000000000000000000000000000006716 161.0
YYD1_k127_2744231_0 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001796 453.0
YYD1_k127_2744231_1 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002426 290.0
YYD1_k127_2744231_2 Transmembrane secretion effector - - - 0.000000000000000000000000006171 118.0
YYD1_k127_2744231_3 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000000000000000822 109.0
YYD1_k127_2744231_4 CAAX amino terminal protease family K07052 - - 0.0000000000000008854 89.0
YYD1_k127_2744231_5 CAAX protease self-immunity K07052 - - 0.000000000002646 78.0
YYD1_k127_2768810_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1141.0
YYD1_k127_2768810_1 Glycyl-tRNA synthetase beta subunit K01879 - 6.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 536.0
YYD1_k127_2768810_2 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002324 340.0
YYD1_k127_2768810_3 Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase K05808 - - 0.0000000000000000000000000000000000000000000001002 175.0
YYD1_k127_2768810_4 - - - - 0.000000000000000000000001616 118.0
YYD1_k127_2768810_5 lactoylglutathione lyase activity - - - 0.000000000000000000001055 100.0
YYD1_k127_2768810_6 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0000006026 61.0
YYD1_k127_2768810_7 Glycyl-tRNA synthetase, alpha subunit K01878,K14164 GO:0003674,GO:0003824,GO:0004812,GO:0004820,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016874,GO:0016875,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0140098,GO:0140101 6.1.1.14 0.000001426 51.0
YYD1_k127_2809090_0 Belongs to the peptidase M16 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 415.0
YYD1_k127_2809090_1 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005285 388.0
YYD1_k127_2809090_2 Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000036 321.0
YYD1_k127_2809090_3 Dihydrodipicolinate reductase, C-terminus K00215 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576 1.17.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000002958 271.0
YYD1_k127_2809090_4 Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1- 4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB K16147 - 2.4.99.16 0.0000000000738 68.0
YYD1_k127_2903801_0 Apoptosis-inducing factor, mitochondrion-associated, C-term - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004343 476.0
YYD1_k127_2903801_1 L-lactate permease K03303 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007222 312.0
YYD1_k127_2903801_2 hydrolase or acyltransferase of alpha beta superfamily - - - 0.000000000000000000000000000000000000000000000000000000000003152 218.0
YYD1_k127_2903801_3 Tripartite tricarboxylate transporter TctA family K07793 - - 0.000000000000000000000000000000000000000000000000000000002237 205.0
YYD1_k127_2903801_4 Belongs to the heme-copper respiratory oxidase family - - - 0.0000000000000000000000000002133 129.0
YYD1_k127_290653_0 (ABC) transporter K11085 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006857 523.0
YYD1_k127_290653_1 Glycosyl transferase - - - 0.000000000000000000000000000000000002573 151.0
YYD1_k127_290653_2 lipid A disaccharide synthetase K00748 - 2.4.1.182 0.000000000000005704 84.0
YYD1_k127_2927868_0 SMART ATP-binding region ATPase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002879 417.0
YYD1_k127_2927868_1 MASE1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 324.0
YYD1_k127_2927868_2 protein histidine kinase activity K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000866 274.0
YYD1_k127_2927868_3 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000122 174.0
YYD1_k127_2933172_0 protease-associated PA domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000235 490.0
YYD1_k127_2933172_1 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 330.0
YYD1_k127_2933172_2 ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000009715 302.0
YYD1_k127_2933172_3 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001261 281.0
YYD1_k127_2933172_4 Amidohydrolase K07045 - - 0.000000000000000000000000000000000000000000000000000000000000000005607 246.0
YYD1_k127_2933172_5 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000000000000000000002976 190.0
YYD1_k127_2933172_6 Isochorismatase family - - - 0.0000000000000000000000000000001338 132.0
YYD1_k127_2933172_7 Creatinine amidohydrolase K01470 - 3.5.2.10 0.00000000000000000000000002633 121.0
YYD1_k127_2933172_8 Xaa-Pro aminopeptidase K01271 - 3.4.13.9 0.0000000000109 77.0
YYD1_k127_2961_0 Heavy metal translocating P-type atpase K01533 - 3.6.3.4 6.665e-220 707.0
YYD1_k127_2961_1 Belongs to the Glu Leu Phe Val dehydrogenases family K00261 - 1.4.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006364 530.0
YYD1_k127_2961_10 DeoC/LacD family aldolase K01635 - 4.1.2.40 0.0000000000000000000000000005564 116.0
YYD1_k127_2961_11 translation release factor activity K03265 - - 0.00000007365 56.0
YYD1_k127_2961_2 Class II Aldolase and Adducin N-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006991 484.0
YYD1_k127_2961_3 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 404.0
YYD1_k127_2961_4 PFAM Integral membrane protein TerC K05794 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002861 374.0
YYD1_k127_2961_5 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000002009 267.0
YYD1_k127_2961_6 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000003147 241.0
YYD1_k127_2961_7 PFAM FAD dependent oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001123 248.0
YYD1_k127_2961_8 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000000000000000000000000004878 158.0
YYD1_k127_2961_9 cytochrome c nitrite reductase K15876 - - 0.000000000000000000000000000000001777 134.0
YYD1_k127_2986172_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000985 522.0
YYD1_k127_2986172_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K09251 - 2.6.1.82 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000513 516.0
YYD1_k127_2986172_2 Yqey-like protein K09117 - - 0.0000000000000000000000000406 109.0
YYD1_k127_2986172_3 NUDIX domain - - - 0.000000000000000004172 93.0
YYD1_k127_2986172_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.000000000006284 78.0
YYD1_k127_2987328_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003947 510.0
YYD1_k127_2987328_1 May be involved in the transport of PQQ or its precursor to the periplasm K06136,K06167 GO:0006082,GO:0006464,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0018130,GO:0018189,GO:0018193,GO:0018212,GO:0019538,GO:0019752,GO:0034641,GO:0036211,GO:0042180,GO:0042181,GO:0042364,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072350,GO:0072351,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901661,GO:1901663 3.1.4.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002233 337.0
YYD1_k127_2987328_2 endonuclease III K00558,K01962,K01963,K03575 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:1901360 2.1.1.37,2.1.3.15,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000005973 248.0
YYD1_k127_2987328_3 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000003823 222.0
YYD1_k127_2987328_4 TIGRFAM haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED - - - 0.00000000000000000000005229 113.0
YYD1_k127_2987328_5 enzyme binding K00567,K07443 - 2.1.1.63 0.0000000000000000000001323 100.0
YYD1_k127_2987328_6 HNH nucleases - - - 0.000000000000000000002689 99.0
YYD1_k127_2987328_7 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000006405 91.0
YYD1_k127_2987328_8 chlorophyll binding - - - 0.000000000005774 78.0
YYD1_k127_2987328_9 HPr Serine kinase C-terminal domain - - - 0.00000006332 63.0
YYD1_k127_2987507_0 Glutamate synthase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002597 546.0
YYD1_k127_2987507_1 GXGXG motif - - - 0.000000000000000000000000000000000000000000000000000000000000000000000002302 262.0
YYD1_k127_2989649_0 Amylo-alpha-1,6-glucosidase - - - 1.208e-213 687.0
YYD1_k127_2989649_1 Glycosyltransferase Family 4 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009511 377.0
YYD1_k127_2989649_2 Periplasmic binding protein K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 345.0
YYD1_k127_2989649_3 ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003867 319.0
YYD1_k127_2989649_4 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) K02626 - 4.1.1.19 0.00000000000000000000000000004584 130.0
YYD1_k127_2989649_5 PFAM glycoside hydrolase family 39 K21000 - - 0.0000000003285 73.0
YYD1_k127_2989649_6 Domain of unknown function (DUF892) - - - 0.000001171 51.0
YYD1_k127_2989649_7 Carbohydrate family 9 binding domain-like - - - 0.000004256 59.0
YYD1_k127_3028164_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005923 480.0
YYD1_k127_3028164_1 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 328.0
YYD1_k127_3028164_2 Protein of unknown function DUF72 - - - 0.0000000000000000000000000000000000000000000000000000000000000000007495 236.0
YYD1_k127_3028164_3 Polysaccharide pyruvyl transferase, CsaB - - - 0.00000000000000000000000000000000000000000000000000000000002557 222.0
YYD1_k127_3028164_4 stage V sporulation protein S K06416 - - 0.0000000000000000000000000000000000608 136.0
YYD1_k127_3028164_5 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000003697 68.0
YYD1_k127_3030755_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000129 93.0
YYD1_k127_3030755_1 AI-2E family transporter - - - 0.0000000000002175 77.0
YYD1_k127_3030755_2 Domain of unknown function (DUF309) K09763 - - 0.00000000002438 76.0
YYD1_k127_3030755_3 - - - - 0.0000000009378 70.0
YYD1_k127_3030755_4 Copper binding proteins, plastocyanin/azurin family - - - 0.000000005042 64.0
YYD1_k127_3036837_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 5.1e-239 759.0
YYD1_k127_3036837_1 MgsA AAA+ ATPase C terminal K07478 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 535.0
YYD1_k127_3036837_10 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.0000000000000000001556 98.0
YYD1_k127_3036837_11 DNA helicase K03654 GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363 3.6.4.12 0.000000009202 68.0
YYD1_k127_3036837_12 SnoaL-like polyketide cyclase - - - 0.00000854 58.0
YYD1_k127_3036837_13 tail specific protease K03797 - 3.4.21.102 0.0004321 52.0
YYD1_k127_3036837_2 L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp K01876,K09759 - 6.1.1.12,6.1.1.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002155 508.0
YYD1_k127_3036837_3 PFAM aminotransferase class I and II K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009532 492.0
YYD1_k127_3036837_4 PFAM tRNA synthetase, class II (G, H, P and S) K01892 - 6.1.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005445 412.0
YYD1_k127_3036837_5 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002203 375.0
YYD1_k127_3036837_6 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 373.0
YYD1_k127_3036837_7 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002143 376.0
YYD1_k127_3036837_8 COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon K07015 - - 0.000000000000000000000000000000000000000000000000000000000000000001072 235.0
YYD1_k127_3036837_9 regulation of translation K03530 - - 0.00000000000000000000000000000000001292 143.0
YYD1_k127_3065007_0 Catalyzes two subsequent steps in gluconeogenesis the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P) K01622 - 3.1.3.11,4.1.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009365 541.0
YYD1_k127_3065007_1 Probable RNA and SrmB- binding site of polymerase A K00970 - 2.7.7.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002773 435.0
YYD1_k127_3065007_2 Asparaginyl-tRNA synthetase K01893 GO:0003674,GO:0003824,GO:0004812,GO:0004816,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006421,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001951 333.0
YYD1_k127_3065007_3 CobQ CobB MinD ParA nucleotide binding domain K03496 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002389 258.0
YYD1_k127_3065007_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000008539 179.0
YYD1_k127_3065007_5 Peroxiredoxin K03564 - 1.11.1.15 0.000000000000000000000000000000000003672 139.0
YYD1_k127_3065007_6 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000000001409 129.0
YYD1_k127_3065007_7 Redoxin K03564 - 1.11.1.15 0.000000007847 58.0
YYD1_k127_3114938_0 Belongs to the SEDS family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005251 486.0
YYD1_k127_3114938_1 serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 321.0
YYD1_k127_3114938_2 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000009738 239.0
YYD1_k127_3114938_3 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.00000000000000000000000001721 125.0
YYD1_k127_3114938_4 GGDEF FHA domain protein - - - 0.00000000000000004548 82.0
YYD1_k127_3114938_5 (FHA) domain - - - 0.00000000000004764 80.0
YYD1_k127_3133515_0 peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006733 565.0
YYD1_k127_3133515_1 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000008513 289.0
YYD1_k127_3133515_10 Helix-turn-helix domain - - - 0.000000578 56.0
YYD1_k127_3133515_2 PFAM metallophosphoesterase - - - 0.000000000000000000000000000000000000000000000000000001157 205.0
YYD1_k127_3133515_3 ATP cob(I)alamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000002368 203.0
YYD1_k127_3133515_4 COG1670 acetyltransferases, including N-acetylases of ribosomal proteins - - - 0.0000000000000000000000000000000000000000000001218 172.0
YYD1_k127_3133515_5 Major facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000001692 184.0
YYD1_k127_3133515_6 PFAM YbaK prolyl-tRNA synthetase associated region K19055 - - 0.000000000000000000000000000000000000000003811 161.0
YYD1_k127_3133515_7 - - - - 0.0000000000000000000000000000000000004387 148.0
YYD1_k127_3133515_8 ArsR family transcriptional regulator - - - 0.000000000000000000004706 105.0
YYD1_k127_3133515_9 Cytochrome C biogenesis protein K02200 - - 0.00000000000000000001885 97.0
YYD1_k127_318445_0 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000002868 150.0
YYD1_k127_318445_1 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000003354 122.0
YYD1_k127_318445_2 DNA-directed 5'-3' RNA polymerase activity K03060 GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030312,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0071944,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 2.7.7.6 0.000000000005028 68.0
YYD1_k127_318445_3 COG0477 Permeases of the major facilitator superfamily - - - 0.00000000003306 75.0
YYD1_k127_318445_4 LysM domain - - - 0.000000008965 65.0
YYD1_k127_3186574_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 360.0
YYD1_k127_3186574_1 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16786 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008812 330.0
YYD1_k127_3186574_2 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001797 276.0
YYD1_k127_3186574_3 ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates K16787 - - 0.000000000000000000000000000000000000000000000000000000000000000002939 233.0
YYD1_k127_3186574_4 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.0000000000000000000000000000000000000000000000000000000009347 202.0
YYD1_k127_3186574_5 Ribosomal protein L17 K02879 - - 0.00000000000000000000000000000001573 129.0
YYD1_k127_3186574_6 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 - - 0.000000000000000002873 85.0
YYD1_k127_319481_0 cell division ATP-binding protein FtsE K09812 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009493 284.0
YYD1_k127_319481_1 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.00000000000000000000000000000000000000000000000000000000000000000000000001083 261.0
YYD1_k127_319481_2 PFAM Peptidase M23 K21471 - - 0.0000000000000000000000000000000000000000000000000000000000001537 232.0
YYD1_k127_319481_3 Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation K09811 - - 0.00000000000000000000000000000000000000000000000008927 189.0
YYD1_k127_319481_4 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000001613 177.0
YYD1_k127_319481_5 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.000000000000000000000000006893 113.0
YYD1_k127_319481_6 CutA1 divalent ion tolerance protein K03926 - - 0.0000000001533 62.0
YYD1_k127_3198674_0 4Fe-4S dicluster domain K00184 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000136 257.0
YYD1_k127_3198674_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000003586 189.0
YYD1_k127_3198674_2 PFAM Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000001515 156.0
YYD1_k127_3198674_3 PFAM Copper binding proteins, plastocyanin azurin family - - - 0.000000000000000000000000000002894 124.0
YYD1_k127_3198674_4 Cytochrome C oxidase, subunit II K00376,K02275 - 1.7.2.4,1.9.3.1 0.0000002374 61.0
YYD1_k127_3218310_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 1.672e-250 802.0
YYD1_k127_3218310_1 Beta-Casp domain K07576 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003595 454.0
YYD1_k127_3218310_2 Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000005417 178.0
YYD1_k127_3218310_3 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains) - - - 0.00000000000000000000000000000005238 134.0
YYD1_k127_3218310_4 Transglycosylase SLT domain - - - 0.0000000000000000000000005842 115.0
YYD1_k127_3218310_5 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 0.000000000000000000000005832 113.0
YYD1_k127_3218310_6 ParB-like nuclease domain K03497 - - 0.00000000000003361 77.0
YYD1_k127_3218310_8 TonB dependent receptor K02014 - - 0.0001 51.0
YYD1_k127_3232949_0 Endoribonuclease that initiates mRNA decay K18682 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005745 558.0
YYD1_k127_3232949_1 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005002 413.0
YYD1_k127_3232949_2 metallophosphoesterase K02029,K02030,K09769 GO:0003674,GO:0003824,GO:0004112,GO:0004113,GO:0008081,GO:0016787,GO:0016788,GO:0042578 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003263 301.0
YYD1_k127_3232949_3 SMART phosphoesterase PHP domain protein K07053 - 3.1.3.97 0.00000000000000000000000000000000000000000000000000000000000000000000001354 252.0
YYD1_k127_3232949_4 Elongation factor SelB, winged helix K03833 - - 0.0000000000000012 90.0
YYD1_k127_3232949_5 zinc-ribbon domain - - - 0.00007403 48.0
YYD1_k127_3240767_0 COG0488 ATPase components of ABC transporters with duplicated ATPase domains K06158 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002878 404.0
YYD1_k127_3240767_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA K02992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000005907 239.0
YYD1_k127_3240767_2 Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit K02950 - - 0.00000000000000000000000000000000000000000000000000000001056 201.0
YYD1_k127_3240767_3 PFAM ribosomal protein L7Ae L30e S12e Gadd45 K07590 - - 0.0000000000000000624 84.0
YYD1_k127_3240767_4 Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome K02355 - - 0.000000000000001234 78.0
YYD1_k127_3282562_0 Alcohol dehydrogenase GroES-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003656 313.0
YYD1_k127_3282562_1 nitrite transmembrane transporter activity K02575,K08223 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005081 317.0
YYD1_k127_3282562_2 PUCC protein - - - 0.0000000000000000000000000000000000000001279 168.0
YYD1_k127_3282562_3 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases K08319 - 1.1.1.411 0.0000000000000000000002381 104.0
YYD1_k127_3282562_4 Ring hydroxylating beta subunit K16303 - 1.14.12.25 0.0002999 44.0
YYD1_k127_32847_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 - 6.5.1.2 2.677e-223 713.0
YYD1_k127_32847_1 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 3.425e-202 637.0
YYD1_k127_32847_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006061 496.0
YYD1_k127_32847_3 Carbamoyl-phosphate synthetase large chain domain protein K01961,K01968,K11263 - 6.3.4.14,6.4.1.2,6.4.1.3,6.4.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003311 443.0
YYD1_k127_32847_4 PFAM carboxyl transferase K01966 - 2.1.3.15,6.4.1.3 0.0000000000000000000000000000461 117.0
YYD1_k127_32847_5 ThiS family K03636 - - 0.00000000000000000000000004205 111.0
YYD1_k127_32847_6 Sporulation and spore germination - - - 0.0000000000000000000000112 108.0
YYD1_k127_32847_7 - - - - 0.0000000000002516 83.0
YYD1_k127_32847_8 TIGRFAM Oxaloacetate decarboxylase, alpha subunit K01571 - 4.1.1.3 0.00000006013 61.0
YYD1_k127_32847_9 PFAM GCN5-related N-acetyltransferase - - - 0.00005216 52.0
YYD1_k127_3294971_0 PFAM RNA-binding protein AU-1 Ribonuclease E G K08301 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 524.0
YYD1_k127_3294971_1 Cell shape determining protein, MreB Mrl family K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000564 484.0
YYD1_k127_3294971_10 Methyl-viologen-reducing hydrogenase, delta subunit K02572,K02573,K03522 - - 0.00000000000000000000000000000000000000000000001701 188.0
YYD1_k127_3294971_11 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.00000000000000000000000000000000000000000003295 179.0
YYD1_k127_3294971_12 Belongs to the bacterial ribosomal protein bL27 family K02899 - - 0.000000000000000000000000000000006969 128.0
YYD1_k127_3294971_13 This protein binds to 23S rRNA in the presence of protein L20 K02888 - - 0.000000000000000000000000000001705 126.0
YYD1_k127_3294971_14 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 GO:0003674,GO:0005488,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0044087,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113 - 0.0000000000000000000001211 113.0
YYD1_k127_3294971_15 rod shape-determining protein MreD K03571 - - 0.0000000000001802 83.0
YYD1_k127_3294971_16 protein secretion K03116 - - 0.0000000000002151 71.0
YYD1_k127_3294971_17 PFAM methyl-viologen-reducing hydrogenase delta subunit - - - 0.0000000000002187 83.0
YYD1_k127_3294971_18 Domain of unknown function (DUF4321) - - - 0.0000000004379 64.0
YYD1_k127_3294971_19 - - - - 0.0000000005228 66.0
YYD1_k127_3294971_2 PFAM penicillin-binding protein transpeptidase K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001493 455.0
YYD1_k127_3294971_20 Cytochrome Cbb3 K03888 - - 0.000002543 54.0
YYD1_k127_3294971_21 FR47-like protein K03789 - 2.3.1.128 0.00002636 55.0
YYD1_k127_3294971_3 An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control K03979 GO:0000003,GO:0000160,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0017076,GO:0019001,GO:0019954,GO:0023052,GO:0030436,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035556,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043934,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0097159,GO:0097367,GO:1901265,GO:1901363 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008322 415.0
YYD1_k127_3294971_4 Peptidoglycan polymerase that is essential for cell wall elongation K05837 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001352 342.0
YYD1_k127_3294971_5 Belongs to the UPF0758 family K03630 - - 0.0000000000000000000000000000000000000000000000000000000000004841 218.0
YYD1_k127_3294971_6 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.000000000000000000000000000000000000000000000000000000000001078 216.0
YYD1_k127_3294971_7 Belongs to the FPP GGPP synthase family K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000003769 218.0
YYD1_k127_3294971_8 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000000000000000000006844 206.0
YYD1_k127_3294971_9 Involved in formation and maintenance of cell shape K03570 - - 0.00000000000000000000000000000000000000000000001638 188.0
YYD1_k127_332891_0 Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 368.0
YYD1_k127_332891_1 Phosphodiester glycosidase - - - 0.00000000000000000000000000000000000000000000000000000000649 217.0
YYD1_k127_332891_2 Methyltransferase domain - - - 0.00000000000000000000000000000000000000000002607 169.0
YYD1_k127_332891_3 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.00000000000000000000000000000766 137.0
YYD1_k127_332891_4 geranylgeranyl reductase activity K21401 - 1.3.99.38 0.0000000000000000000000858 111.0
YYD1_k127_3340874_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 578.0
YYD1_k127_3340874_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.000000000000000000000000001218 122.0
YYD1_k127_3363838_0 4-hydroxyphenylacetate 3-hydroxylase C terminal K00483 - 1.14.14.9 2.472e-213 672.0
YYD1_k127_3363838_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004127 462.0
YYD1_k127_3363838_2 ABC transporter K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 310.0
YYD1_k127_3363838_3 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000008139 262.0
YYD1_k127_3363838_4 Efflux ABC transporter permease protein K02004 - - 0.000000000000000000000000000000000000000000000000000000005349 222.0
YYD1_k127_3363838_5 Flavin reductase like domain - - - 0.0000000000000000000000000000000000000000009002 178.0
YYD1_k127_3363838_6 Mycolic acid cyclopropane synthetase - - - 0.00000000000000000000000000000000000006678 163.0
YYD1_k127_3363838_7 Barrel-sandwich domain of CusB or HlyD membrane-fusion K02005 - - 0.0000000000000000000000007304 119.0
YYD1_k127_3446236_0 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003307 364.0
YYD1_k127_3446236_1 Belongs to the ABC transporter superfamily K02031,K02032,K13896,K19229,K19230 GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005524,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008144,GO:0008150,GO:0008324,GO:0008519,GO:0009987,GO:0015075,GO:0015101,GO:0015203,GO:0015489,GO:0015672,GO:0015695,GO:0015696,GO:0015846,GO:0015847,GO:0017076,GO:0022857,GO:0030001,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034220,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071804,GO:0071805,GO:0072488,GO:0097159,GO:0097367,GO:0098655,GO:0098660,GO:0098662,GO:1901265,GO:1901363,GO:1902047 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005149 366.0
YYD1_k127_3446236_2 COG1173 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001117 330.0
YYD1_k127_3446236_3 TIGRFAM oligopeptide dipeptide ABC transporter, ATPase subunit K02032 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007721 301.0
YYD1_k127_3446236_4 extracellular solute-binding protein, family 5 K02035 - - 0.0000000000000000000000000000000000000000000002037 175.0
YYD1_k127_3446236_5 Cupin domain - - - 0.000000000000000000000000000000000000006183 152.0
YYD1_k127_3446236_6 (E1) component, eukaryotic type, alpha subunit K21416 - - 0.000000000000000000000000009186 124.0
YYD1_k127_3446236_7 - - - - 0.000002877 59.0
YYD1_k127_3484668_0 Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily K02015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003088 306.0
YYD1_k127_3484668_1 PFAM ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000003889 253.0
YYD1_k127_3484668_2 Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives K00796 - 2.5.1.15 0.000000000000000000000000000000000000000000000000000000000000000000008225 248.0
YYD1_k127_3484668_3 GTP cyclohydrolase I K01495 - 3.5.4.16 0.0000000000000000000000000000000000000000000000000000000000000000003523 234.0
YYD1_k127_3484668_4 PFAM ABC-2 type transporter K01992 - - 0.00000000004075 66.0
YYD1_k127_3484668_5 - - - - 0.00000002358 58.0
YYD1_k127_3506758_0 tryptophan synthase activity K01696,K06001 - 4.2.1.20 7.303e-217 681.0
YYD1_k127_3506758_1 Belongs to the GTP cyclohydrolase I type 2 NIF3 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000129 255.0
YYD1_k127_3506758_2 Iron permease FTR1 family K07243 - - 0.0000000000000000000000000000000000000000000000000000000000000000000008256 246.0
YYD1_k127_3506758_3 Ferric uptake regulator family K22297 - - 0.0000000000000000000000000000004192 127.0
YYD1_k127_3506758_4 iron dependent repressor K03709 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005506,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006355,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0009058,GO:0009237,GO:0009712,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016151,GO:0018958,GO:0019184,GO:0019219,GO:0019222,GO:0019290,GO:0019540,GO:0019748,GO:0030145,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0034641,GO:0040007,GO:0043043,GO:0043167,GO:0043169,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0044550,GO:0045892,GO:0045934,GO:0046870,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.000000000000000000000000000006311 132.0
YYD1_k127_3506758_5 YwiC-like protein - - - 0.000001019 61.0
YYD1_k127_3506758_6 ATPase of the ABC class - - - 0.000005792 49.0
YYD1_k127_3520287_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004594 477.0
YYD1_k127_3520287_1 Belongs to the SEDS family K03588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002379 366.0
YYD1_k127_3520287_2 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015 348.0
YYD1_k127_3520287_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000445 278.0
YYD1_k127_3520287_4 TIGRFAM stage V sporulation protein D K03587,K08384 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000006418 253.0
YYD1_k127_3520287_5 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.0000000000000000000000000000000000000000000000000000000000000000001019 256.0
YYD1_k127_3520287_6 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000003242 235.0
YYD1_k127_3529641_0 peptidase dimerisation domain protein K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002459 291.0
YYD1_k127_3529641_1 DinB family - - - 0.00000000000000000000000000000000000000000000000001466 193.0
YYD1_k127_3529641_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.000000000000000000000000000000000000000000000001626 182.0
YYD1_k127_3529641_3 Uncharacterized conserved protein (DUF2277) - - - 0.000000000000000000000000000000006973 130.0
YYD1_k127_3529641_4 Domain of unknown function (DU1801) - - - 0.0000000000000000000001841 109.0
YYD1_k127_3555561_0 PFAM Prolyl oligopeptidase family - - - 2.601e-263 828.0
YYD1_k127_3555561_1 PFAM EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 312.0
YYD1_k127_3555561_2 Catalytic LigB subunit of aromatic ring-opening dioxygenase - - - 0.000000000000000000000000000000000000000000000000000000000003456 221.0
YYD1_k127_3555561_3 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.0000000000000000000000000000000000000000000000000001406 192.0
YYD1_k127_3555561_4 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K02549,K19802,K21624 - 4.2.1.113,4.2.1.171,5.1.1.20 0.000000000000000000000000002319 113.0
YYD1_k127_3555561_5 - - - - 0.00000000004435 72.0
YYD1_k127_3713309_0 PFAM transposase IS116 IS110 IS902 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001181 314.0
YYD1_k127_3713309_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000000003735 191.0
YYD1_k127_3713309_2 PKD domain - - - 0.00000000000000000000000001374 121.0
YYD1_k127_3713309_3 glyoxalase III activity - - - 0.000000000000000000000002235 113.0
YYD1_k127_3713309_4 Two component regulator propeller - - - 0.000002466 59.0
YYD1_k127_3763883_0 Flavin containing amine oxidoreductase - - - 1.208e-209 664.0
YYD1_k127_3763883_1 - - - - 0.0000000000000000000004713 100.0
YYD1_k127_3763883_2 Acetyltransferase (GNAT) domain - - - 0.00021 52.0
YYD1_k127_3767095_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0 1073.0
YYD1_k127_3767095_1 secondary active sulfate transmembrane transporter activity K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004728 370.0
YYD1_k127_3767095_2 geranylgeranyl reductase activity K14266 - 1.14.19.9 0.0000000000000000000000000000000000000000000000000000005029 211.0
YYD1_k127_3767095_3 Bacterial protein of unknown function (DUF881) - - - 0.0000000000000000000000000000000001311 151.0
YYD1_k127_3783033_0 PFAM luciferase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 328.0
YYD1_k127_3783033_1 Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates K00989,K02428 - 2.7.7.56,3.6.1.66 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005758 314.0
YYD1_k127_3783033_2 DNA ligase K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000002434 237.0
YYD1_k127_3783033_3 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000004718 220.0
YYD1_k127_3783033_4 PFAM Copper amine oxidase N-terminal domain K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000006095 201.0
YYD1_k127_3805268_0 Nickel-dependent hydrogenase K00436 - 1.12.1.2 9.629e-194 613.0
YYD1_k127_3805268_1 TIGRFAM TRAP transporter, 4TM 12TM fusion protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005244 563.0
YYD1_k127_3805268_2 Aldo/keto reductase family K16950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003249 359.0
YYD1_k127_3805268_3 coenzyme F420 hydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005923 368.0
YYD1_k127_3805268_4 2 iron, 2 sulfur cluster binding K02823 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 356.0
YYD1_k127_3805268_5 Cyclic nucleotide-monophosphate binding domain - - - 0.0000000000000000000000000000000000987 144.0
YYD1_k127_3805268_6 Hydrogenase maturation protease K03605 - - 0.0000000000000000000000000000704 122.0
YYD1_k127_3805268_7 TRAP transporter solute receptor, TAXI family K07080 - - 0.00000000000000000000000003571 110.0
YYD1_k127_3805268_8 Hydrogenase/urease nickel incorporation, metallochaperone, hypA - - - 0.00000000002448 68.0
YYD1_k127_385552_0 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008946 342.0
YYD1_k127_385552_1 Glycosyltransferase like family 2 K13002 - - 0.0000000000000000000000000000000000000000000000000000000003297 212.0
YYD1_k127_385552_2 Protein conserved in bacteria - - - 0.000000000000000000000000000000007824 143.0
YYD1_k127_385552_3 nucleic acid-binding protein contains PIN domain - - - 0.0000000000000000003308 96.0
YYD1_k127_385552_4 acetyltransferase K03789 - 2.3.1.128 0.0005081 44.0
YYD1_k127_385552_5 - - - - 0.0007284 46.0
YYD1_k127_385803_0 PFAM Glycosyl transferase, group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002021 376.0
YYD1_k127_385803_1 ATPase family associated with various cellular activities (AAA) K03924 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159 342.0
YYD1_k127_385803_10 Tetratricopeptide repeat - - - 0.0000000000002362 78.0
YYD1_k127_385803_2 PFAM sugar transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 310.0
YYD1_k127_385803_3 PFAM Transglutaminase-like superfamily K22452 - 2.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000002276 277.0
YYD1_k127_385803_4 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000000003054 219.0
YYD1_k127_385803_5 PFAM Glycosyl transferase, group 1 - - - 0.000000000000000000000000000000000000000000000007135 192.0
YYD1_k127_385803_6 Protein of unknown function DUF58 - - - 0.0000000000000000002328 100.0
YYD1_k127_385803_7 Glycosyl transferase family 2 - - - 0.000000000000000006987 94.0
YYD1_k127_385803_8 O-antigen ligase like membrane protein - - - 0.00000000000000001583 96.0
YYD1_k127_385803_9 O-Antigen ligase K18814 - - 0.0000000000000001932 95.0
YYD1_k127_3935193_0 TIGR00255 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000224 278.0
YYD1_k127_3935193_1 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K01598,K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000001057 189.0
YYD1_k127_3935193_2 Belongs to the cytidylate kinase family. Type 2 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000002674 164.0
YYD1_k127_3935193_3 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.0000000000000000000000000000000000000000641 171.0
YYD1_k127_3935193_4 Belongs to the UPF0296 family K09777 - - 0.000000000000000000000000000000000002294 139.0
YYD1_k127_3935193_5 Fibronectin-binding protein A N-terminus (FbpA) - - - 0.00000000000000000000000009435 119.0
YYD1_k127_3935193_6 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006276,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010332,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042221,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0046677,GO:0050896,GO:0051276,GO:0051716,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 - 0.00007729 48.0
YYD1_k127_3943399_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009394 494.0
YYD1_k127_3943399_1 Binding-protein-dependent transport system inner membrane component - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000006228 272.0
YYD1_k127_403293_0 PFAM Binding-protein-dependent transport system inner membrane component K02025,K10233 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008672 378.0
YYD1_k127_403293_1 PFAM Binding-protein-dependent transport system inner membrane component K10119,K10234 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004156 375.0
YYD1_k127_403293_2 Glycosyl transferases group 1 K13057 - 2.4.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002089 279.0
YYD1_k127_403293_3 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000002189 105.0
YYD1_k127_403477_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002035 467.0
YYD1_k127_403477_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 - 5.4.99.25 0.000000000000000000000000000000000000000000000000000000000000000000000004877 255.0
YYD1_k127_403477_2 PFAM phosphoesterase, RecJ domain protein K06881 - 3.1.13.3,3.1.3.7 0.0000000000000000000000000000000000000000000000000000000000000002644 232.0
YYD1_k127_403477_3 Belongs to the ribF family K11753 - 2.7.1.26,2.7.7.2 0.00000000000000000000000000000000000000000000000000000000000001776 232.0
YYD1_k127_403477_4 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000000000363 214.0
YYD1_k127_403477_5 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.00000000000000000000000000000008357 127.0
YYD1_k127_403477_6 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.0000000000000000000000000000008323 136.0
YYD1_k127_403477_7 Protein of unknown function (DUF503) K09764 - - 0.00000000000000000003153 93.0
YYD1_k127_4052715_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 3.662e-195 631.0
YYD1_k127_4052715_1 PFAM ABC transporter K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000107 336.0
YYD1_k127_4052715_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) K01912 - 6.2.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001331 329.0
YYD1_k127_4052715_3 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000003417 229.0
YYD1_k127_4076347_0 Thermophilic metalloprotease (M29) K19689 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 434.0
YYD1_k127_4076347_1 Belongs to the pyruvate kinase family K00873 - 2.7.1.40 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001805 284.0
YYD1_k127_4076347_2 LemA family K03744 - - 0.00000000000000000000000000000000000000000000000000000000000002111 219.0
YYD1_k127_4076347_3 VIT family - - - 0.0000000000000000004187 88.0
YYD1_k127_4078214_0 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008479 294.0
YYD1_k127_4078214_1 Beta-lactamase superfamily domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003307 288.0
YYD1_k127_4078214_2 PAS domain - - - 0.00000000000000000000000000000000000000004877 156.0
YYD1_k127_4078214_3 regulatory protein, gntR - - - 0.00000000000000000000000000001129 132.0
YYD1_k127_4078214_4 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.00000000000000000000000000009019 117.0
YYD1_k127_4100292_0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase K19200 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064 334.0
YYD1_k127_4100292_1 PFAM Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 294.0
YYD1_k127_4100292_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000006705 226.0
YYD1_k127_4100292_3 Acetyltransferase (GNAT) family - - - 0.0000000000000000000000000000000000000000000006365 188.0
YYD1_k127_4100292_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08968 - 1.8.4.14 0.000000000000000000000000000000000000000000003664 170.0
YYD1_k127_4100292_5 pterin-4-alpha-carbinolamine dehydratase K01724 GO:0003674,GO:0003824,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008124,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0018130,GO:0019438,GO:0019751,GO:0034311,GO:0034312,GO:0034641,GO:0042558,GO:0042559,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617 4.2.1.96 0.00000000000000000000000000000000000000000006424 162.0
YYD1_k127_4100292_6 Exopolysaccharide synthesis, ExoD - - - 0.0000000000000000000004796 106.0
YYD1_k127_4100292_7 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000207 98.0
YYD1_k127_4100292_8 Transcriptional regulator, arsR - - - 0.00002399 50.0
YYD1_k127_4121091_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000003105 252.0
YYD1_k127_4121091_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000005946 237.0
YYD1_k127_4121091_2 LysE type translocator - - - 0.00000000000000000000000000000000000000000000000000000000001033 221.0
YYD1_k127_4121091_3 PFAM AzlC family protein - - - 0.00000000000000000000000000000000000000000000000000000000002104 224.0
YYD1_k127_4121091_4 OsmC-like protein K07397 - - 0.00000000000000000000000000001321 125.0
YYD1_k127_4121091_5 beta-lactamase domain protein K05555 - - 0.0000000000000000000000000001547 127.0
YYD1_k127_4121091_6 Branched-chain amino acid transport protein (AzlD) - - - 0.00000000000001655 84.0
YYD1_k127_4121091_7 VanZ like family - - - 0.00055 46.0
YYD1_k127_4126097_0 PFAM Methylmalonyl-CoA mutase K01848 - 5.4.99.2 9.658e-221 697.0
YYD1_k127_4126097_1 Cysteine-rich domain K11473,K21834 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001648 510.0
YYD1_k127_4126097_2 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K07442 - 2.1.1.219,2.1.1.220 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 297.0
YYD1_k127_4126097_3 B12 binding domain K01849 - 5.4.99.2 0.000000000000000000000000000000000000000000000000000000002891 207.0
YYD1_k127_4126097_4 electron transfer flavoprotein K03522,K22432 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016627,GO:0016628,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071949,GO:0097159,GO:1901265,GO:1901363 1.3.1.108 0.000000000000000000000000000000000000000000106 163.0
YYD1_k127_4126097_5 domain protein K03281 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000009947 63.0
YYD1_k127_4136960_0 FAD linked oxidase domain protein - - - 4.488e-296 938.0
YYD1_k127_4136960_1 PFAM peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001253 491.0
YYD1_k127_4136960_10 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.00000000000000000000000000581 117.0
YYD1_k127_4136960_11 small multi-drug export - - - 0.00000000000000000004491 106.0
YYD1_k127_4136960_12 Transcriptional regulator K05804,K13652,K13653 - - 0.000000000000000001352 92.0
YYD1_k127_4136960_13 AsnC family - - - 0.0000000000000002246 82.0
YYD1_k127_4136960_14 YGGT family K02221 - - 0.0000000000401 68.0
YYD1_k127_4136960_15 Belongs to the UPF0312 family - - - 0.0000000004471 67.0
YYD1_k127_4136960_16 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000002371 57.0
YYD1_k127_4136960_17 PFAM PEGA domain - - - 0.0003266 51.0
YYD1_k127_4136960_2 Ornithine cyclodeaminase/mu-crystallin family K01750,K19244 - 1.4.1.1,4.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000001385 271.0
YYD1_k127_4136960_3 PFAM thioesterase superfamily - - - 0.00000000000000000000000000000000000000000000000000000001392 209.0
YYD1_k127_4136960_4 Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine K01611 - 4.1.1.50 0.0000000000000000000000000000000000000000000000000001408 190.0
YYD1_k127_4136960_5 PFAM Major Facilitator Superfamily K08223 - - 0.00000000000000000000000000000000000000000000000001613 199.0
YYD1_k127_4136960_6 Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate K00872 - 2.7.1.39 0.000000000000000000000000000000000000000001058 165.0
YYD1_k127_4136960_7 Methyltransferase domain - - - 0.00000000000000000000000000000000000006061 158.0
YYD1_k127_4136960_8 NUDIX domain - - - 0.00000000000000000000000000000000001368 151.0
YYD1_k127_4136960_9 Cold shock protein K03704 - - 0.0000000000000000000000000004899 114.0
YYD1_k127_4149399_0 COG0747 ABC-type dipeptide transport system, periplasmic component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001933 398.0
YYD1_k127_4149399_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 317.0
YYD1_k127_4149399_2 ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009567 310.0
YYD1_k127_4149399_3 OsmC-like protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001193 284.0
YYD1_k127_4149399_4 Amidohydrolase family K01443 - 3.5.1.25 0.000000000000003067 83.0
YYD1_k127_4149399_5 Carboxymuconolactone decarboxylase family - - - 0.0004981 44.0
YYD1_k127_4168697_0 Uncharacterized protein family (UPF0051) K09014 - - 2.289e-235 734.0
YYD1_k127_4168697_1 Transketolase, pyrimidine binding domain K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008865 437.0
YYD1_k127_4168697_10 PFAM Rieske 2Fe-2S domain K05710 - - 0.00000000000000000000000002101 119.0
YYD1_k127_4168697_11 Chaperone - - - 0.00000000000000000004488 100.0
YYD1_k127_4168697_12 Scaffold protein Nfu/NifU N terminal - - - 0.0000000000009008 77.0
YYD1_k127_4168697_13 Cna B domain protein - - - 0.000000000116 75.0
YYD1_k127_4168697_14 PFAM GGDEF domain containing protein - - - 0.00000001748 66.0
YYD1_k127_4168697_15 Roadblock/LC7 domain K07131 - - 0.00001163 54.0
YYD1_k127_4168697_2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 353.0
YYD1_k127_4168697_3 Uncharacterized protein family (UPF0051) K09015 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004545 353.0
YYD1_k127_4168697_4 ATPases associated with a variety of cellular activities K09013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003772 316.0
YYD1_k127_4168697_5 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor K00161,K11381 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000005426 312.0
YYD1_k127_4168697_6 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000002839 253.0
YYD1_k127_4168697_7 RNA polymerase sigma-54 factor K03092 GO:0000976,GO:0001067,GO:0001130,GO:0001216,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032991,GO:0032993,GO:0042802,GO:0043565,GO:0044212,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141 - 0.0000000000000000000000000000000000000000000000000000000000000001153 232.0
YYD1_k127_4168697_8 PFAM adenosine AMP deaminase K01488 - 3.5.4.4 0.0000000000000000000000000000000000000000000000000000000003436 217.0
YYD1_k127_4168697_9 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K02405 - - 0.00000000000000000000000000000000000000009247 164.0
YYD1_k127_4199435_0 Mo-co oxidoreductase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003158 338.0
YYD1_k127_4199435_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00382 - 1.8.1.4 0.00000000000000000000000000000000000000000000000000000000000000006111 237.0
YYD1_k127_4199435_2 electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon- concentration K05581 GO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0008137,GO:0008150,GO:0008152,GO:0009987,GO:0015980,GO:0016491,GO:0016651,GO:0016655,GO:0044237,GO:0045333,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000001083 105.0
YYD1_k127_4199435_3 Uncharacterized conserved protein (DUF2203) - - - 0.00000000000000009495 88.0
YYD1_k127_4201891_0 TrkA-N domain K03455,K10716 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003763 489.0
YYD1_k127_4201891_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008792 375.0
YYD1_k127_4201891_10 Transcriptional regulator - - - 0.000000000000005288 83.0
YYD1_k127_4201891_2 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 6.1.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 371.0
YYD1_k127_4201891_3 Esterase PHB depolymerase K03932 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004216 250.0
YYD1_k127_4201891_4 PFAM 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.000000000000000000000000000000000000000000000000004281 193.0
YYD1_k127_4201891_5 Transporter, CPA2 family - - - 0.00000000000000000000000000000000000000000000000009611 186.0
YYD1_k127_4201891_6 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000005497 151.0
YYD1_k127_4201891_7 Phosphoesterase (MutT - - - 0.000000000000000000000000000000001998 150.0
YYD1_k127_4201891_8 MotA TolQ ExbB proton channel K03561,K03562 - - 0.0000000000000000000000000000002492 137.0
YYD1_k127_4201891_9 Archease protein family (MTH1598/TM1083) - - - 0.000000000000000000000000006273 119.0
YYD1_k127_4208507_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002051 567.0
YYD1_k127_4208507_1 Aminotransferase class-V K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 337.0
YYD1_k127_4208507_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002788 312.0
YYD1_k127_4208507_3 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.0004643 49.0
YYD1_k127_4218608_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 523.0
YYD1_k127_4218608_1 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003162 387.0
YYD1_k127_4218608_2 Psort location CytoplasmicMembrane, score 10.00 K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 327.0
YYD1_k127_4218608_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K15581 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000833 314.0
YYD1_k127_4218608_4 Extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 321.0
YYD1_k127_4218608_5 D-isomer specific 2-hydroxyacid dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001959 311.0
YYD1_k127_4218608_6 Calcineurin-like phosphoesterase superfamily domain - - - 0.000000000000000000000000000000000000000000000000004581 186.0
YYD1_k127_4218608_7 PFAM Conserved Archaeal protein (DUF2204) - - - 0.000000000000000000000000001718 120.0
YYD1_k127_4218608_8 Ami_3 K01448 - 3.5.1.28 0.00007455 55.0
YYD1_k127_4262320_0 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006903 434.0
YYD1_k127_4262320_1 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004017 366.0
YYD1_k127_4262320_2 Sodium:sulfate symporter transmembrane region - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006368 362.0
YYD1_k127_4262320_3 Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA K07442 - 2.1.1.219,2.1.1.220 0.00000000000000000000000000000000000000000000001883 175.0
YYD1_k127_4263624_0 Thiamine pyrophosphate enzyme, central domain K01652 - 2.2.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 352.0
YYD1_k127_4263624_1 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033,K15581 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 306.0
YYD1_k127_4263624_2 Peptidase family M20/M25/M40 - - - 0.00000000000000000000000009788 121.0
YYD1_k127_427016_0 4-hydroxyphenylacetate 3-hydroxylase C terminal K00483,K14534 - 1.14.14.9,4.2.1.120,5.3.3.3 1.23e-210 666.0
YYD1_k127_427016_1 ABC transporter, substratebinding protein K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111 525.0
YYD1_k127_427016_2 Galactose oxidase, central domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005817 325.0
YYD1_k127_427016_3 Cobalamin-independent synthase, Catalytic domain K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 307.0
YYD1_k127_427016_4 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003403 296.0
YYD1_k127_427016_5 Putative cyclase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007615 275.0
YYD1_k127_427016_6 branched-chain amino acid K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000004504 229.0
YYD1_k127_427016_7 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000006546 212.0
YYD1_k127_427016_8 Branched-chain amino acid transport system / permease component K01998 - - 0.00000000000000000000000000000000000249 157.0
YYD1_k127_427016_9 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 - - 0.00000000000000000000000000000000002824 149.0
YYD1_k127_4279563_0 Membrane-associated phospholipid phosphatase K19302 - 3.6.1.27 0.0000000000000000000000000000000000000000000000000000000000000007406 233.0
YYD1_k127_4279563_1 lipid kinase, YegS Rv2252 BmrU family - - - 0.0000000000000000000000000000000000000000000004076 175.0
YYD1_k127_4279563_2 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000000000000000000000000004453 167.0
YYD1_k127_4279563_3 Peptidase family M28 - - - 0.00000000000001662 87.0
YYD1_k127_4293863_0 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003057 354.0
YYD1_k127_4293863_1 GGDEF domain K02488 - 2.7.7.65 0.000000000000000000000000000000000000000000001229 187.0
YYD1_k127_4293863_2 Transglycosylase SLT domain K08309 - - 0.0000000000000000000000000000000000000000006331 179.0
YYD1_k127_4293863_3 Nitroreductase family - - - 0.0000000000000000000000000001611 121.0
YYD1_k127_4293863_4 AMP-binding enzyme K00666,K12426,K12427,K12428,K21059 - 2.7.7.95,6.2.1.51 0.0000000000000000002105 103.0
YYD1_k127_42957_0 Methylenetetrahydrofolate reductase K00297,K00547,K00548 - 1.5.1.20,2.1.1.10,2.1.1.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007607 605.0
YYD1_k127_42957_1 acyl-coa dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008369 407.0
YYD1_k127_42957_2 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003871,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0030312,GO:0032259,GO:0034641,GO:0035999,GO:0036211,GO:0040007,GO:0042084,GO:0042085,GO:0042558,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0050667,GO:0051186,GO:0071704,GO:0071944,GO:0140096,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007514 366.0
YYD1_k127_42957_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 GO:0003674,GO:0003824,GO:0004766,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0010487,GO:0016740,GO:0016765,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0050314,GO:0071704,GO:1901564,GO:1901566,GO:1901576 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000002168 264.0
YYD1_k127_42957_4 Belongs to the RtcB family K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000002486 230.0
YYD1_k127_42957_5 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation K00549 - 2.1.1.14 0.00000000000000000000000000000000000000000000000000000000000001094 236.0
YYD1_k127_42957_6 Cyclase dehydrase - - - 0.00007396 54.0
YYD1_k127_4339549_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 1.884e-249 789.0
YYD1_k127_4339549_1 Magnesium chelatase, subunit ChlI K07391 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001781 560.0
YYD1_k127_4339549_2 Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002026 317.0
YYD1_k127_4339549_3 DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003542 284.0
YYD1_k127_4339549_4 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.00000000000000000000000000000000000000000000000000000000002168 230.0
YYD1_k127_4339549_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000000000000000000000000000000000000000000000000000001002 218.0
YYD1_k127_4339549_6 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000001021 178.0
YYD1_k127_4339549_7 Uncharacterised protein family UPF0102 K07460 - - 0.000000000000000000000000004225 114.0
YYD1_k127_4345910_0 PFAM membrane bound O-acyl transferase MBOAT family protein K19294 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004674 460.0
YYD1_k127_4345910_1 radical SAM domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001065 419.0
YYD1_k127_4345910_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000002733 248.0
YYD1_k127_4345910_3 - - - - 0.0000000000000000000001259 102.0
YYD1_k127_4360656_0 Type II IV secretion system protein K02454,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001207 524.0
YYD1_k127_4360656_1 PFAM Type II secretion system protein E K02454,K02652 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000869 481.0
YYD1_k127_4360656_2 twitching motility protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006187 411.0
YYD1_k127_4360656_3 PFAM Type II secretion system F domain K02653 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004069 356.0
YYD1_k127_4360656_4 secretion system protein G K02456 - - 0.00000000004339 70.0
YYD1_k127_4360656_5 Prokaryotic N-terminal methylation motif K02650 - - 0.0000000001216 69.0
YYD1_k127_4371411_0 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009038 291.0
YYD1_k127_4371411_1 dCMP deaminase activity K01493 - 3.5.4.12 0.00000000000000000000000000000000000000000000000001314 196.0
YYD1_k127_4371411_2 PFAM Ribose galactose isomerase K01808 - 5.3.1.6 0.00000000000000000000000000000000000000000000000003141 189.0
YYD1_k127_4371411_3 Telomere recombination K07566 - 2.7.7.87 0.00000000000000000000000000000000000007836 148.0
YYD1_k127_4371411_4 PFAM TRAP C4-dicarboxylate transport system permease DctM subunit - - - 0.00000000000000000000000000000000008864 134.0
YYD1_k127_4371411_5 glycerophosphoryl diester phosphodiesterase K01113,K01126 - 3.1.3.1,3.1.4.46 0.00000000000000007194 91.0
YYD1_k127_4397315_0 High confidence in function and specificity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 376.0
YYD1_k127_4397315_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.0000000000000000000000000000000000000000000000000000000006799 210.0
YYD1_k127_4414421_0 Permease K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 368.0
YYD1_k127_4414421_1 Peptide ABC transporter permease K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000139 335.0
YYD1_k127_4414421_2 COG0747 ABC-type dipeptide transport system, periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004316 261.0
YYD1_k127_4414421_3 protease-associated PA domain protein - - - 0.000000000000000002917 86.0
YYD1_k127_4418690_0 Psort location CytoplasmicMembrane, score K07793 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001335 507.0
YYD1_k127_4418690_1 Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 475.0
YYD1_k127_4418690_10 Tripartite tricarboxylate transporter TctB family - - - 0.0002458 47.0
YYD1_k127_4418690_2 aminopeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004547 302.0
YYD1_k127_4418690_3 Leucyl aminopeptidase (Aminopeptidase t) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002493 270.0
YYD1_k127_4418690_4 Putative glycosyl hydrolase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001115 263.0
YYD1_k127_4418690_5 Sodium:sulfate symporter transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001105 261.0
YYD1_k127_4418690_6 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000003008 247.0
YYD1_k127_4418690_7 Short-chain dehydrogenase reductase sdr - - - 0.00000000000000000000000000000000000000000000007989 192.0
YYD1_k127_4418690_8 Protein of unknown function (DUF1572) - - - 0.00000003359 62.0
YYD1_k127_4418690_9 Tripartite tricarboxylate transporter TctB family - - - 0.00007869 51.0
YYD1_k127_4419269_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K03296 - - 8.736e-233 762.0
YYD1_k127_4419269_2 PFAM Rhomboid family - - - 0.00000000000000000000000002873 124.0
YYD1_k127_4419269_3 Cyclic nucleotide-monophosphate binding domain - - - 0.000000000000000000000004121 107.0
YYD1_k127_4419269_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000033 114.0
YYD1_k127_4419269_5 BetI-type transcriptional repressor, C-terminal - - - 0.000000000000000000003433 100.0
YYD1_k127_4424376_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000001031 217.0
YYD1_k127_4424376_1 Ribonuclease B OB domain K03704 - - 0.00000000000000000000000001255 112.0
YYD1_k127_4424376_2 two component, sigma54 specific, transcriptional regulator, Fis family K02481 - - 0.00000000000000000000002128 108.0
YYD1_k127_4424376_3 STAS domain - - - 0.0000000000000004454 83.0
YYD1_k127_4424376_4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.00000000000002057 80.0
YYD1_k127_4424376_5 Tetratricopeptide repeat - - - 0.00003666 56.0
YYD1_k127_4424376_6 transcriptional regulators - - - 0.0001122 54.0
YYD1_k127_4424376_7 PFAM DNA polymerase beta domain protein region - - - 0.0003834 51.0
YYD1_k127_4447162_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005825 588.0
YYD1_k127_4447162_1 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002304 521.0
YYD1_k127_4447162_2 KR domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001316 269.0
YYD1_k127_4447162_3 Cupin - - - 0.000000000000000000000000000000001565 133.0
YYD1_k127_4447162_4 Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins - - - 0.00000000002869 76.0
YYD1_k127_4447162_5 Activator of Hsp90 ATPase 1 family protein - - - 0.00005495 48.0
YYD1_k127_4459627_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 2.193e-252 814.0
YYD1_k127_4459627_1 PFAM amidohydrolase K01464,K01465 - 3.5.2.2,3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001475 587.0
YYD1_k127_4459627_10 guanylate cyclase catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000232 203.0
YYD1_k127_4459627_11 PFAM Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000531 199.0
YYD1_k127_4459627_12 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000000001203 201.0
YYD1_k127_4459627_13 helix_turn_helix isocitrate lyase regulation - - - 0.0000000000000000000000000000000000000000000006147 177.0
YYD1_k127_4459627_14 Protein of unknown function (DUF3891) - - - 0.0000000000000000000000000000000000000000129 171.0
YYD1_k127_4459627_15 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.0000000000000000000000000000000001251 154.0
YYD1_k127_4459627_16 Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate K01704 GO:0003674,GO:0003824,GO:0003861,GO:0016829,GO:0016835,GO:0016836 4.2.1.33,4.2.1.35 0.00000000000000000000000000000001037 146.0
YYD1_k127_4459627_17 Receptor family ligand binding region K01999 - - 0.000000000000000000000007742 116.0
YYD1_k127_4459627_2 Aconitase family (aconitate hydratase) K01703 - 4.2.1.33,4.2.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001898 353.0
YYD1_k127_4459627_3 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002715 334.0
YYD1_k127_4459627_4 Peptidase dimerisation domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 317.0
YYD1_k127_4459627_5 PFAM Isocitrate lyase family K03417,K20454 - 4.1.3.30,4.1.3.32 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000761 295.0
YYD1_k127_4459627_6 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004375 277.0
YYD1_k127_4459627_7 Binding-protein-dependent transport system inner membrane component - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004498 275.0
YYD1_k127_4459627_8 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004015 264.0
YYD1_k127_4459627_9 pyridine nucleotide-disulphide oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000004115 226.0
YYD1_k127_4464364_0 Cytochrome P450 - - - 9.618e-201 632.0
YYD1_k127_4464364_1 Domain of unknown function (DUF4010) - - - 0.0000000000000000000000000000000000000000000000000000000000001728 229.0
YYD1_k127_4464364_2 low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.000000000000000000000007601 104.0
YYD1_k127_4464364_3 potassium uptake protein, TrkH family K03498 - - 0.000000000000000000000832 98.0
YYD1_k127_4470787_0 Polysulphide reductase, NrfD - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003369 393.0
YYD1_k127_4470787_1 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003371 284.0
YYD1_k127_4470787_2 4Fe-4S dicluster domain K00184 - - 0.00000000000000000000000000000000000000000000000000000000000008488 224.0
YYD1_k127_4470787_3 Cytochrome c - - - 0.00000000000000000002591 102.0
YYD1_k127_4470787_4 Cytochrome c - - - 0.0000000000216 69.0
YYD1_k127_4475818_0 NMT1-like family K02051,K15553 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 390.0
YYD1_k127_4475818_1 PFAM PfkB domain protein K00847,K00874 - 2.7.1.4,2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000004585 258.0
YYD1_k127_4475818_2 Aldolase/RraA - - - 0.00000000000000000000000000000000000000000000000000000001096 204.0
YYD1_k127_4475818_3 Bacterial transcriptional regulator K13641 - - 0.00000000000000000000000000002033 121.0
YYD1_k127_451794_0 DNA replication proofreading K02336,K06877 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 483.0
YYD1_k127_451794_1 Saccharopine dehydrogenase NADP binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008129 273.0
YYD1_k127_451794_2 - - - - 0.0000000000000000753 83.0
YYD1_k127_451794_3 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage - - - 0.0000000006864 68.0
YYD1_k127_451794_4 membrane K08976 - - 0.000000009078 57.0
YYD1_k127_4543687_0 Subunit A of antiporter complex involved in resistance to high concentrations of Na , K , Li and or alkali K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000199 546.0
YYD1_k127_4543687_1 NADH-quinone oxidoreductase, chain M K00342 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003999 494.0
YYD1_k127_4543687_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 GO:0003674,GO:0003824,GO:0003954,GO:0008137,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002436 367.0
YYD1_k127_4543687_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000004655 162.0
YYD1_k127_4543687_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340,K05576 - 1.6.5.3 0.0000000000000000000000007147 119.0
YYD1_k127_4543687_5 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000004617 107.0
YYD1_k127_4543687_6 Belongs to the V-ATPase 116 kDa subunit family K02123 GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019899,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044769,GO:0045851,GO:0046034,GO:0046390,GO:0046483,GO:0046961,GO:0048878,GO:0050801,GO:0051117,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0055086,GO:0065007,GO:0065008,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.0001026 48.0
YYD1_k127_4545335_0 Participates in initiation and elongation during chromosome replication K02314,K02316,K17680 - 3.6.4.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002256 402.0
YYD1_k127_4545335_1 - - - - 0.0002769 49.0
YYD1_k127_4551840_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001203 578.0
YYD1_k127_4551840_1 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002468 467.0
YYD1_k127_4551840_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002365 405.0
YYD1_k127_4551840_3 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007534 401.0
YYD1_k127_4551840_4 Cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000195 260.0
YYD1_k127_4551840_5 membrane-associated Zn-dependent proteases 1 - - - 0.0000000000000000000000000000000000000000000000000000000004009 216.0
YYD1_k127_4551840_6 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000001859 188.0
YYD1_k127_4551840_7 ABC-2 family transporter protein K09696 - - 0.00000000000000000000000000000000000000002009 175.0
YYD1_k127_4551840_8 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07104 - 1.13.11.2 0.00000000000000000000000000000000000006516 147.0
YYD1_k127_4551840_9 Cell division protein FtsQ K03589 - - 0.000007626 57.0
YYD1_k127_4586427_0 Von Willebrand factor type A - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004046 286.0
YYD1_k127_4586427_1 von Willebrand factor, type A - - - 0.000000000000000000000000000000000000000001154 179.0
YYD1_k127_4586427_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000001263 90.0
YYD1_k127_4586427_3 AAA domain - - - 0.00000000000000001374 82.0
YYD1_k127_4605192_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003023 514.0
YYD1_k127_4605192_1 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003384 450.0
YYD1_k127_4605192_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766,K13497 - 2.4.2.18,4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002517 362.0
YYD1_k127_4605192_3 Peptidase C26 K01658 - 4.1.3.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000003861 268.0
YYD1_k127_4605192_4 Belongs to the TrpC family K01609 - 4.1.1.48 0.0000000000000000000000000000000000000000000000000000000001664 223.0
YYD1_k127_4605192_5 Belongs to the TrpF family K01817 - 5.3.1.24 0.0000000000000000004618 88.0
YYD1_k127_4605306_0 E1-E2 ATPase K01533,K17686 - 3.6.3.4,3.6.3.54 1.118e-288 911.0
YYD1_k127_4605306_1 Stage II sporulation protein E (SpoIIE) - - - 0.00000000000000000000000000000000000000001019 171.0
YYD1_k127_4605306_2 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.00000000000000000000000000000006367 145.0
YYD1_k127_4605306_3 Metal-sensitive transcriptional repressor K21600 - - 0.000000000000001616 78.0
YYD1_k127_4605306_4 Nitrogen fixation protein FixI K01533 - 3.6.3.4 0.000006379 50.0
YYD1_k127_4623102_0 ABC-type dipeptide transport system periplasmic component K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008813 503.0
YYD1_k127_4623102_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004333 390.0
YYD1_k127_4623102_10 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000002555 156.0
YYD1_k127_4623102_12 amino acid K03294 - - 0.000000000000000005225 90.0
YYD1_k127_4623102_13 membrane - - - 0.0000000000004556 78.0
YYD1_k127_4623102_14 PDZ DHR GLGF domain protein K04771 - 3.4.21.107 0.000000001792 68.0
YYD1_k127_4623102_15 Histidine kinase-like ATPase domain K04757 - 2.7.11.1 0.0000001142 59.0
YYD1_k127_4623102_16 antisigma factor binding K03090,K04749,K06378 - - 0.00004021 52.0
YYD1_k127_4623102_17 C-terminus of AA_permease K03294 - - 0.0009968 51.0
YYD1_k127_4623102_2 Peptidase S9 prolyl oligopeptidase active site - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002484 367.0
YYD1_k127_4623102_3 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0022857,GO:0051179,GO:0051234,GO:0055085 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003411 326.0
YYD1_k127_4623102_4 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002291 317.0
YYD1_k127_4623102_5 PFAM binding-protein-dependent transport systems inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003751 305.0
YYD1_k127_4623102_6 Histidine kinase K02480 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004131 284.0
YYD1_k127_4623102_7 Short-chain Dehydrogenase reductase - - - 0.0000000000000000000000000000000000000000000000000000000004575 210.0
YYD1_k127_4623102_8 PFAM Haloacid dehalogenase domain protein hydrolase - - - 0.0000000000000000000000000000000000000000000000000000004199 207.0
YYD1_k127_4623102_9 Two component transcriptional regulator, LuxR family - - - 0.000000000000000000000000000000000000000000000000000003048 213.0
YYD1_k127_4662304_0 PFAM Cytochrome c assembly protein K02198 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002636 496.0
YYD1_k127_4662304_1 Cytochrome C assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000000005941 205.0
YYD1_k127_4662304_2 Cytochrome b6 K02635,K02704 - - 0.000000000000000000000000000000000000004542 165.0
YYD1_k127_4662304_3 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000000000000009706 101.0
YYD1_k127_4662304_4 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000001667 82.0
YYD1_k127_4662304_5 PFAM Rieske 2Fe-2S domain - - - 0.00000000000004764 80.0
YYD1_k127_4662304_6 Belongs to the ABC transporter superfamily - - - 0.0000000003022 63.0
YYD1_k127_4662304_7 Iron permease FTR1 K07243 - - 0.000000005644 69.0
YYD1_k127_4662304_8 permease K07243 - - 0.00001359 58.0
YYD1_k127_4677132_0 PFAM Glucose Sorbosone dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001078 444.0
YYD1_k127_4677132_1 PFAM Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005502 339.0
YYD1_k127_4677132_2 Psort location Cytoplasmic, score 8.87 K14591 - - 0.00000000000000000000000000000000000000000000000000000000134 207.0
YYD1_k127_4677132_3 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.00000000000000000000000000000000000000000009225 162.0
YYD1_k127_4677132_4 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000001266 175.0
YYD1_k127_4677132_5 Rubrerythrin K22336 - 1.16.3.1 0.00000000000000000000000000000000000000000186 167.0
YYD1_k127_4691376_1 Tripartite tricarboxylate transporter TctA family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 474.0
YYD1_k127_4691376_2 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009644 374.0
YYD1_k127_4691376_3 protocatechuate 3,4-dioxygenase activity K00449 - 1.13.11.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001777 327.0
YYD1_k127_4691376_4 Class II Aldolase and Adducin N-terminal domain K03077 - 5.1.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000009529 275.0
YYD1_k127_4691376_5 protocatechuate 3,4-dioxygenase activity K00448 - 1.13.11.3 0.00000000000000000000000000000000000000000000000000000000000000000007639 242.0
YYD1_k127_4691376_6 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000007156 190.0
YYD1_k127_4691376_7 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.000000000000000000000000000000000000000004545 171.0
YYD1_k127_470124_0 Isocitrate/isopropylmalate dehydrogenase K00031 - 1.1.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 573.0
YYD1_k127_470124_1 Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate K01679 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001321 507.0
YYD1_k127_470124_10 PFAM membrane protein of K08972 - - 0.0000000000000000000003728 110.0
YYD1_k127_470124_2 Required for morphogenesis under gluconeogenic growth conditions - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009137 388.0
YYD1_k127_470124_3 Catalyzes the reversible oxidation of malate to oxaloacetate K00016,K00024 - 1.1.1.27,1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008062 377.0
YYD1_k127_470124_4 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001515 356.0
YYD1_k127_470124_5 Displays ATPase and GTPase activities K06958 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 338.0
YYD1_k127_470124_6 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 350.0
YYD1_k127_470124_7 Acetyltransferase (GNAT) domain K22479 - - 0.000000000000000000000000000000000000000000000000000000000001203 214.0
YYD1_k127_470124_8 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.0000000000000000000000000000000000000003169 169.0
YYD1_k127_470124_9 FCD K05799 - - 0.00000000000000000000000000000000000007049 151.0
YYD1_k127_4714363_0 PFAM DAHP synthetase I K03856 - 2.5.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001882 413.0
YYD1_k127_4714363_1 PFAM Prephenate dehydrogenase K04517 - 1.3.1.12 0.000000000000000000000000000000000000005728 166.0
YYD1_k127_4714363_2 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000000000000001071 151.0
YYD1_k127_4714363_3 CAAX protease self-immunity K07052 - - 0.0000003306 54.0
YYD1_k127_4715026_0 TIGRFAM single-stranded-DNA-specific exonuclease RecJ K07462 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 458.0
YYD1_k127_4715026_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001819 377.0
YYD1_k127_4715026_2 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000000002178 231.0
YYD1_k127_4715026_3 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000004152 190.0
YYD1_k127_4715026_4 response regulator, receiver - - - 0.0000000000000000000000000000000000000000000000002368 190.0
YYD1_k127_4715026_5 Lipopolysaccharide assembly protein A domain - - - 0.00007543 51.0
YYD1_k127_4718980_0 PFAM type II secretion system protein E K02652 - - 0.00000000000000000000000000002038 134.0
YYD1_k127_4718980_1 Roadblock LC7 K07131 - - 0.00000000000000000000002687 104.0
YYD1_k127_4718980_2 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03090 GO:0000988,GO:0000990,GO:0003674,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043254,GO:0043620,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000002584 90.0
YYD1_k127_4718980_3 Transcriptional regulator K21089,K21972,K22491 GO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141 - 0.0000000000000006474 81.0
YYD1_k127_4718980_4 Roadblock/LC7 domain - - - 0.0000000007025 64.0
YYD1_k127_4721743_0 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K00850 - 2.7.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000133 434.0
YYD1_k127_4721743_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001116 285.0
YYD1_k127_4721743_2 helix_turn_helix, Lux Regulon K11618 - - 0.00000000000000000000000000000000000000000000000000000000000000000000006067 246.0
YYD1_k127_4721743_3 DeoC/LacD family aldolase K01635 - 4.1.2.40 0.000000000000000000000000000000000000000000000000000000000000000000228 243.0
YYD1_k127_4741894_0 Isocitrate/isopropylmalate dehydrogenase K07246 - 1.1.1.83,1.1.1.93,4.1.1.73 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008649 329.0
YYD1_k127_4741894_1 Tripartite tricarboxylate transporter family receptor - - - 0.0000000000000000000000000000000000000000000000000000000000000000001443 254.0
YYD1_k127_4741894_2 aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000005688 233.0
YYD1_k127_4741894_3 FCD - - - 0.0000000000000000000000000000000002382 146.0
YYD1_k127_4741894_4 Tripartite tricarboxylate transporter TctB family K07794 - - 0.0001124 47.0
YYD1_k127_4762986_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 1.638e-229 736.0
YYD1_k127_4762986_1 Belongs to the dGTPase family. Type 2 subfamily K01129 GO:0003674,GO:0003824,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003116 316.0
YYD1_k127_4782642_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 4.775e-197 636.0
YYD1_k127_4782642_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002602 558.0
YYD1_k127_4782642_10 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.000000000000000000000000000000000000000000000002169 186.0
YYD1_k127_4782642_11 Proton-coupled thiamine transporter YuaJ K16789 - - 0.00000000000000000000000000000000000000000000001762 180.0
YYD1_k127_4782642_12 thiamine pyrophosphokinase K00949 - 2.7.6.2 0.000000000000000000000000000000000000000000405 166.0
YYD1_k127_4782642_13 Methyltransferase K08316 - 2.1.1.171 0.000000000000000000000000000000000002394 143.0
YYD1_k127_4782642_14 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.00000000000000000000000000004711 117.0
YYD1_k127_4782642_15 PFAM AIR synthase related protein K04655 - - 0.0000000000000000000000000008393 117.0
YYD1_k127_4782642_16 Belongs to the bacterial ribosomal protein bL28 family K02902 - - 0.00000000000000000002993 91.0
YYD1_k127_4782642_17 metal-binding, possibly nucleic acid-binding protein K07040 - - 0.0000000000000003276 84.0
YYD1_k127_4782642_18 Belongs to the bacterial ribosomal protein bL32 family K02911 - - 0.0000000000000003299 79.0
YYD1_k127_4782642_19 negative regulation of DNA recombination - - - 0.0000000000009208 79.0
YYD1_k127_4782642_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 425.0
YYD1_k127_4782642_3 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002558 340.0
YYD1_k127_4782642_4 Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress K04083 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 297.0
YYD1_k127_4782642_5 malonyl CoA-acyl carrier protein transacylase K00645 - 2.3.1.39 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 302.0
YYD1_k127_4782642_6 3-oxoacyl-ACP reductase K00059 GO:0000166,GO:0003674,GO:0003824,GO:0004312,GO:0004316,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0030497,GO:0032787,GO:0036094,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050661,GO:0050662,GO:0055114,GO:0071704,GO:0072330,GO:0097159,GO:1901265,GO:1901363,GO:1901576 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000002022 268.0
YYD1_k127_4782642_7 TIGRFAM Diguanylate cyclase - - - 0.000000000000000000000000000000000000000000000000000000000017 219.0
YYD1_k127_4782642_8 Protein similar to CwfJ C-terminus 1 K19710 - 2.7.7.53 0.000000000000000000000000000000000000000000000000000007091 201.0
YYD1_k127_4782642_9 Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism K03685 - 3.1.26.3 0.00000000000000000000000000000000000000000000000000001962 197.0
YYD1_k127_4796081_0 Elongator protein 3, MiaB family, Radical SAM K22226,K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 423.0
YYD1_k127_4796081_1 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001633 383.0
YYD1_k127_4796081_2 Delta-aminolevulinic acid dehydratase K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002161 355.0
YYD1_k127_4796081_3 PFAM Chlorite dismutase - - - 0.000000000000000000000000000000000000000000000000000000000000000000006049 241.0
YYD1_k127_4796081_4 Catalyzes the ferrous insertion into protoporphyrin IX K01772 GO:0003674,GO:0003824,GO:0004325,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000113 196.0
YYD1_k127_4815842_0 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000007107 325.0
YYD1_k127_4815842_1 PFAM Peptidase family M23 K08259 - 3.4.24.75 0.000000000006706 66.0
YYD1_k127_4815842_2 Belongs to the anti-sigma-factor antagonist family K06378 - - 0.00000000001139 75.0
YYD1_k127_4944846_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K03737 - 1.2.7.1 0.0 1330.0
YYD1_k127_4944846_1 PFAM CBS domain containing protein K04767 - - 0.000000000000000000000000000000000000000000000000004229 189.0
YYD1_k127_4944846_2 OsmC-like protein K07397 - - 0.0000000002301 62.0
YYD1_k127_4944846_3 - - - - 0.0001071 44.0
YYD1_k127_4952439_0 peptidase M20 K01439 - 3.5.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000876 512.0
YYD1_k127_4952439_1 Domain of unknown function (DUF1998) K06877 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003103 361.0
YYD1_k127_4952439_2 40-residue YVTN family beta-propeller - - - 0.00000000000000000000000000000000000000001909 172.0
YYD1_k127_4952439_3 Thioredoxin domain - - - 0.0000000000000000000000000000007873 126.0
YYD1_k127_4952439_4 alkyl hydroperoxide reductase activity - - - 0.000000000000004912 77.0
YYD1_k127_4952439_5 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 - 3.1.26.4 0.000000005489 68.0
YYD1_k127_4952439_6 Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses K01179,K01637 - 3.2.1.4,4.1.3.1 0.0000001614 64.0
YYD1_k127_4953820_0 Bacterial extracellular solute-binding proteins, family 5 Middle - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001267 628.0
YYD1_k127_4953820_1 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001685 411.0
YYD1_k127_4953820_2 N-terminal TM domain of oligopeptide transport permease C - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005624 326.0
YYD1_k127_4953820_3 6-phosphogluconate dehydrogenase, NAD-binding K00020,K00042 - 1.1.1.31,1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000004748 245.0
YYD1_k127_495575_0 Aldo keto - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003214 389.0
YYD1_k127_495575_1 Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) K01714 - 4.3.3.7 0.000000000000000000000000000000000000000000000000000000000000167 220.0
YYD1_k127_495575_2 protein with SCP PR1 domains - - - 0.0000000000000000000000000000003448 136.0
YYD1_k127_495575_3 - - - - 0.00000000000000000000000002583 116.0
YYD1_k127_495575_4 PFAM SMP-30 Gluconolaconase - - - 0.0000000002018 72.0
YYD1_k127_497063_0 permease K06901 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 415.0
YYD1_k127_497063_1 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000001411 224.0
YYD1_k127_497063_2 Cytidylate kinase-like family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000558 165.0
YYD1_k127_497063_3 regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed - - - 0.00000004207 64.0
YYD1_k127_497063_4 PBS lyase HEAT-like repeat - - - 0.00001358 57.0
YYD1_k127_4979668_0 SMART Metal-dependent phosphohydrolase, HD region K07037 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003622 520.0
YYD1_k127_4979668_1 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000000008365 106.0
YYD1_k127_4979668_2 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0030312,GO:0040007,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000002181 101.0
YYD1_k127_4985256_0 Aldehyde dehydrogenase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 402.0
YYD1_k127_4985256_1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 0.00000000000000000000000000000000000000000000000000000000000000000000000001071 274.0
YYD1_k127_4985256_2 Glycine D-amino acid oxidase (deaminating) K00303 - 1.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000005413 262.0
YYD1_k127_4985256_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.0000000000000000000000000000000000000000000000000000000000000000000006112 245.0
YYD1_k127_4985256_4 Creatinase/Prolidase N-terminal domain K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000001242 198.0
YYD1_k127_4985256_5 Pyridoxamine 5'-phosphate oxidase K07005 - - 0.000000000009469 71.0
YYD1_k127_4985256_6 Family of unknown function (DUF1028) - - - 0.0000000001459 64.0
YYD1_k127_4985256_7 Regulatory protein GntR HTH K05799 - - 0.0000003405 61.0
YYD1_k127_4990780_0 Amino acid permease - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007939 625.0
YYD1_k127_4990780_1 PFAM Amidohydrolase 3 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003977 454.0
YYD1_k127_4990780_2 TIGRFAM Potassium uptake protein TrkH K03498 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008674 359.0
YYD1_k127_4990780_3 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001147 255.0
YYD1_k127_4990780_4 Histidine kinase K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000002182 223.0
YYD1_k127_4990780_5 Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins - - - 0.00000000000000000000000000000002421 134.0
YYD1_k127_4990780_6 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.00000000000000002269 91.0
YYD1_k127_5009438_0 S-adenosylmethionine synthetase (AdoMet synthetase) K00789 - 2.5.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006641 487.0
YYD1_k127_5009438_1 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002581 422.0
YYD1_k127_5009438_2 Domain present in PSD-95, Dlg, and ZO-1/2. K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006939 263.0
YYD1_k127_5009438_3 (Rhomboid) family K07059 - - 0.0000000000000000000000000000000000000000000000000000000000000183 233.0
YYD1_k127_5009438_4 pathogenesis K07507 - - 0.000000000000000000000000000000000000000000000346 189.0
YYD1_k127_5009438_5 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000000000000000000006439 103.0
YYD1_k127_5009438_6 Amidohydrolase family - - - 0.0002032 51.0
YYD1_k127_5011430_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.3 1.754e-242 766.0
YYD1_k127_5011430_1 DNA internalization-related competence protein ComEC Rec2 K02238 - - 0.00000000000000000000000000000000000000003297 172.0
YYD1_k127_5011430_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 GO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006399,GO:0006450,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360 - 0.000000000000001354 77.0
YYD1_k127_5027094_0 Belongs to the universal ribosomal protein uS2 family K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002127 342.0
YYD1_k127_5027094_1 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003149 284.0
YYD1_k127_5027094_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001325 273.0
YYD1_k127_5027094_3 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.000000000000000000000000000000000000000000000000000000000000000007272 229.0
YYD1_k127_5027094_4 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.0000000000000000000000000000000000000000000000000000000000000004649 234.0
YYD1_k127_5027094_5 Belongs to the 'phage' integrase family. XerC subfamily K03733,K04763 - - 0.00000000000000000000000000000000000000002065 155.0
YYD1_k127_5027094_6 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000265 148.0
YYD1_k127_5027094_7 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.000000002801 62.0
YYD1_k127_5030204_0 Cys/Met metabolism PLP-dependent enzyme K00639 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008710,GO:0008890,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0018130,GO:0019752,GO:0019842,GO:0030170,GO:0032787,GO:0034641,GO:0036094,GO:0042364,GO:0043167,GO:0043168,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0070279,GO:0071704,GO:0072330,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 484.0
YYD1_k127_5030204_1 Catalyzes the NAD( )-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate K00060 - 1.1.1.103 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001271 367.0
YYD1_k127_5030204_2 ABC transporter, ATP-binding protein K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 333.0
YYD1_k127_5030204_3 His Kinase A (phosphoacceptor) domain K07636 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007595 353.0
YYD1_k127_5030204_4 MoeA domain protein domain I and II K03750 - 2.10.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004093 336.0
YYD1_k127_5030204_5 PFAM response regulator receiver K02483,K07658,K07668 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003973 275.0
YYD1_k127_5030204_6 Branched-chain amino acid ATP-binding cassette transporter K01995 - - 0.000000000000000000000000000000000000000000006771 164.0
YYD1_k127_5030204_7 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.0000000000000000000000000000000000005097 143.0
YYD1_k127_5030204_8 Aminotransferase K00812,K22457 GO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769,GO:0047297 2.6.1.1,2.6.1.14 0.0000000000000000000115 107.0
YYD1_k127_5030204_9 Membrane - - - 0.000002015 55.0
YYD1_k127_5053831_0 Penicillin-binding Protein K05366 - 2.4.1.129,3.4.16.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008535 493.0
YYD1_k127_5053831_1 PFAM Alcohol dehydrogenase GroES-like domain K00344 - 1.6.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 347.0
YYD1_k127_5053831_2 TIGRFAM Diguanylate cyclase K21022 - 2.7.7.65 0.00000000000000000000000000000000000006542 158.0
YYD1_k127_5067364_0 Domain of unknown function (DUF1727) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 415.0
YYD1_k127_5067364_1 CobB/CobQ-like glutamine amidotransferase domain K07009 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000936 264.0
YYD1_k127_5067364_2 Permeases of the drug metabolite transporter (DMT) K03298 - - 0.00000000000000000000000000000000000000000000000000001845 204.0
YYD1_k127_5067364_3 Thioredoxin - - - 0.000000000000000000000000000000000000000000009269 165.0
YYD1_k127_5067364_4 Histone methylation protein DOT1 - - - 0.000000000000000000000000000000000000000000671 163.0
YYD1_k127_5067364_5 Major facilitator superfamily - - - 0.000000000000000000000000000001344 139.0
YYD1_k127_5083054_0 CobW/HypB/UreG, nucleotide-binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 592.0
YYD1_k127_5083054_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001105 367.0
YYD1_k127_5083054_2 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001365 303.0
YYD1_k127_5083054_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.00000000000000000000000000000000000000000000000000000000000000000000000000006384 266.0
YYD1_k127_5083054_4 Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid K05946 - 2.4.1.187 0.00000000000000000000000000000000000000000000000000000000000004319 238.0
YYD1_k127_5083054_5 Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate K03431 - 5.4.2.10 0.0000000000000000000000000000000000000000000000005887 183.0
YYD1_k127_5083054_6 Toxic component of a toxin-antitoxin (TA) module. An RNase K07064 - - 0.0000000000000000000000000000000000000000007297 165.0
YYD1_k127_5083054_7 PFAM YbbR family protein - - - 0.0000004161 60.0
YYD1_k127_5083054_8 positive regulation of growth - - - 0.000000623 55.0
YYD1_k127_5112910_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001484 394.0
YYD1_k127_5112910_1 Psort location CytoplasmicMembrane, score 10.00 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006656 284.0
YYD1_k127_5112910_2 PFAM thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000001287 253.0
YYD1_k127_5112910_3 Belongs to the bacterial glucokinase family K00845 - 2.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000007163 231.0
YYD1_k127_5112910_4 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 - 2.1.1.297 0.000000000000000000000000000000000000000000000000000000009894 220.0
YYD1_k127_5112910_5 TIGRFAM chromate transporter, chromate ion transporter (CHR) family K07240 - - 0.0000000000000000000000000000000000002162 144.0
YYD1_k127_5112910_6 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000001726 117.0
YYD1_k127_5112910_7 Telomere recombination K07566 - 2.7.7.87 0.00000000000003408 76.0
YYD1_k127_518294_0 Belongs to the citrate synthase family K01647 - 2.3.3.1 1.602e-208 656.0
YYD1_k127_518294_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 589.0
YYD1_k127_518294_2 NapC/NirT cytochrome c family, N-terminal region - - - 0.00000000000000000000000000000000000000000000000003895 189.0
YYD1_k127_518294_3 Barrel-sandwich domain of CusB or HlyD membrane-fusion - - - 0.00000000000000000000000000000000000000000000008949 184.0
YYD1_k127_518294_4 Integral membrane sensor signal transduction histidine kinase K07680,K07778,K11617,K14988 - 2.7.13.3 0.00000000000000017 89.0
YYD1_k127_518294_5 - - - - 0.0000000001637 68.0
YYD1_k127_5200760_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K09163 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001618 286.0
YYD1_k127_5200760_1 Ferrous iron transport B domain protein K04759 - - 0.0000000000000000000000000000000000000000000000009336 190.0
YYD1_k127_5200760_2 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.4.2.29 0.00000000000000000000000000000000000000000000003164 173.0
YYD1_k127_5200760_3 Preprotein translocase subunit YajC K03210 - - 0.00000000000000009141 89.0
YYD1_k127_5200760_4 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.000000000000000703 83.0
YYD1_k127_520082_0 PFAM Aminotransferase class I and II K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001704 462.0
YYD1_k127_520082_1 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 419.0
YYD1_k127_520082_2 Carboxymuconolactone decarboxylase family - - - 0.00000000000000000000000000000000000000000000000000000000000000007971 225.0
YYD1_k127_520082_3 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000002803 123.0
YYD1_k127_5217061_0 SPTR ATPase associated with various cellular activities AAA_3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006966 390.0
YYD1_k127_5217061_1 XdhC Rossmann domain K07402 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003391 329.0
YYD1_k127_5217061_2 COGs COG3552 Protein containing von Willebrand factor type A (vWA) domain K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001632 295.0
YYD1_k127_5217061_3 periplasmic protein (DUF2233) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007739 264.0
YYD1_k127_5217061_4 MobA-Related Protein K00087,K07141,K07402,K19190 - 1.1.1.328,1.17.1.4,2.7.7.76 0.0000000000000000000000000000000001373 142.0
YYD1_k127_5217061_5 PFAM S-layer domain-containing protein - - - 0.0000000509 66.0
YYD1_k127_5217061_6 carbon monoxide dehydrogenase subunit G K09386 - - 0.00001771 48.0
YYD1_k127_5239037_0 Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides K01255 - 3.4.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003565 316.0
YYD1_k127_5239037_1 Belongs to the MIP aquaporin (TC 1.A.8) family K06188 - - 0.0000000000000000000000000000000000000000000000000000000002522 210.0
YYD1_k127_5239037_2 Beta-lactamase superfamily domain - - - 0.00000000000000000000000000000000000000000000000000004409 196.0
YYD1_k127_5239037_3 Belongs to the arginase family K01476 - 3.5.3.1 0.00000000000000000000000000000000000008123 151.0
YYD1_k127_5239037_4 glyoxalase bleomycin resistance protein dioxygenase K06996 - - 0.00000000000001422 78.0
YYD1_k127_5255046_0 Histidine kinase K00936,K01719,K01768,K02030,K02584,K10441,K13924,K20962 - 2.1.1.80,2.7.13.3,3.1.1.61,3.1.4.52,3.6.3.17,4.2.1.75,4.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 425.0
YYD1_k127_5255046_1 NAD synthase K01916 - 6.3.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003705 289.0
YYD1_k127_5255046_2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K00573 - 2.1.1.77 0.000000000000000000000000000000000000000000000000000000000000000009222 242.0
YYD1_k127_5255046_3 ANTAR K22010 GO:0000160,GO:0003674,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0030312,GO:0035556,GO:0040007,GO:0043167,GO:0043168,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944 - 0.000000000000000000000000000000000000000000000000000003215 214.0
YYD1_k127_5255046_4 Uncharacterized ACR, COG1430 K09005 - - 0.00000000000000000000000000008462 124.0
YYD1_k127_5255046_5 TIGRFAM geranylgeranyl reductase - - - 0.0000000007082 63.0
YYD1_k127_5260982_0 PFAM Tripartite tricarboxylate transporter TctA family K07793 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000733 562.0
YYD1_k127_5260982_1 PFAM Pyridoxal-dependent decarboxylase K01593 - 4.1.1.105,4.1.1.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000147 526.0
YYD1_k127_5260982_10 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.0000000000000004438 86.0
YYD1_k127_5260982_11 Tripartite tricarboxylate transporter TctB family - - - 0.0000001679 64.0
YYD1_k127_5260982_12 - - - - 0.000003248 56.0
YYD1_k127_5260982_2 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K15580 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001479 537.0
YYD1_k127_5260982_3 adenylyl cyclase class-3 4 guanylyl cyclase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005935 479.0
YYD1_k127_5260982_4 N-terminal TM domain of oligopeptide transport permease C K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002458 387.0
YYD1_k127_5260982_5 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006473 398.0
YYD1_k127_5260982_6 peptidase M42 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001455 295.0
YYD1_k127_5260982_7 Tripartite tricarboxylate transporter family receptor K07795 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002951 279.0
YYD1_k127_5260982_8 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.0000000000000000000004796 106.0
YYD1_k127_5260982_9 FCD - - - 0.0000000000000000004033 97.0
YYD1_k127_5262453_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 6.745e-275 863.0
YYD1_k127_5262453_1 nuclear chromosome segregation - - - 0.00003331 46.0
YYD1_k127_5306236_0 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002073 404.0
YYD1_k127_5306236_1 Branched-chain amino acid transport system / permease component K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003598 414.0
YYD1_k127_5306236_2 Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family K01486 - 3.5.4.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002266 281.0
YYD1_k127_5306236_3 ATPases associated with a variety of cellular activities - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000002808 269.0
YYD1_k127_532272_0 ABC transporter permease K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000168 274.0
YYD1_k127_532272_1 ABC transporter substrate-binding protein K02035,K13889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001506 273.0
YYD1_k127_532272_2 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000000000001159 246.0
YYD1_k127_532272_3 Creatinase/Prolidase N-terminal domain K01271 - 3.4.13.9 0.0000000000000000000000000000000000000000000000000002478 211.0
YYD1_k127_532272_4 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.000000000000000000000000000000000000000000000000001447 203.0
YYD1_k127_532272_5 Glycine D-amino acid oxidase (deaminating) K00303 - 1.5.3.1 0.0008231 51.0
YYD1_k127_5328495_0 Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008752 422.0
YYD1_k127_5328495_1 COG3842 ABC-type spermidine putrescine transport systems, ATPase components K02010,K02017,K15497 - 3.6.3.29,3.6.3.30,3.6.3.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002536 306.0
YYD1_k127_5328495_2 Bacterial extracellular solute-binding protein K02012 - - 0.00000000000000000000000000000000000000000000000005107 193.0
YYD1_k127_5328495_3 Belongs to the UPF0337 (CsbD) family - - - 0.00001145 50.0
YYD1_k127_5346711_0 ABC-type polar amino acid transport system ATPase component K09972 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001632 271.0
YYD1_k127_5346711_1 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001574 251.0
YYD1_k127_5346711_2 TIGRFAM amine acid ABC transporter, permease protein, 3-TM region, His Glu Gln Arg opine family K09971,K10040 - - 0.000000000000000000000000000000000000000000000000000000000004268 231.0
YYD1_k127_5385558_0 nitrogen compound transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008918 314.0
YYD1_k127_5385558_1 Psort location CytoplasmicMembrane, score 10.00 K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001651 310.0
YYD1_k127_5385558_2 Ketopantoate reductase PanE/ApbA C terminal K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000007564 250.0
YYD1_k127_5385558_3 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000003251 228.0
YYD1_k127_5411964_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 430.0
YYD1_k127_5411964_1 Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis K02945,K03527 - 1.17.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000004903 249.0
YYD1_k127_5411964_10 PspC domain - - - 0.00000000001546 74.0
YYD1_k127_5411964_2 PFAM diacylglycerol kinase catalytic region - - - 0.00000000000000000000000000000000000000000000000000000000000000000198 239.0
YYD1_k127_5411964_3 ABC transporter K02013 - 3.6.3.34 0.0000000000000000000000000000000000000000000000000000000000000009127 238.0
YYD1_k127_5411964_4 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000000000000000000000000000000000304 206.0
YYD1_k127_5411964_5 ABC-type Fe3 -hydroxamate transport system, periplasmic component K02016 - - 0.0000000000000000000000000000000000000000000000000002901 198.0
YYD1_k127_5411964_6 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000001846 152.0
YYD1_k127_5411964_7 Putative tRNA binding domain K06878 - - 0.0000000000000000000000000000000000003008 147.0
YYD1_k127_5411964_8 COG2301 Citrate lyase beta subunit K01644 - 4.1.3.34 0.000000000000000000000000000000000003386 145.0
YYD1_k127_5411964_9 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.00000000000000000000000000000000009238 139.0
YYD1_k127_55069_0 AMP-binding enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001735 467.0
YYD1_k127_55069_1 PFAM Polysaccharide pyruvyl transferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004159 453.0
YYD1_k127_55069_2 - - - - 0.000000000000001438 83.0
YYD1_k127_55069_3 - - - - 0.00000001132 58.0
YYD1_k127_5511494_0 Belongs to the glycosyl hydrolase 57 family K22451 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464 2.4.1.25 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004754 545.0
YYD1_k127_5511494_1 ABC-type sugar transport system periplasmic component K10232 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002156 459.0
YYD1_k127_5511494_2 PFAM FAD linked oxidase domain protein K11472 - - 0.0000000000000000000000000000000000000000000000000000000000000000001761 246.0
YYD1_k127_5511494_3 short-chain dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000002393 207.0
YYD1_k127_5511494_4 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000000000004438 142.0
YYD1_k127_5511494_5 Domain in cystathionine beta-synthase and other proteins. - - - 0.00000000000003858 82.0
YYD1_k127_5511494_6 Type IV pilus biogenesis stability protein PilW - - - 0.00000000008803 75.0
YYD1_k127_55119_0 AIR synthase related protein, C-terminal domain K01952 - 6.3.5.3 1.434e-213 698.0
YYD1_k127_55119_1 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009871 505.0
YYD1_k127_55119_10 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.0000000000000002557 82.0
YYD1_k127_55119_11 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) - - - 0.000000000000001868 78.0
YYD1_k127_55119_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000325 513.0
YYD1_k127_55119_3 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003853 478.0
YYD1_k127_55119_4 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002074 421.0
YYD1_k127_55119_5 helix_turn_helix, Lux Regulon - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 329.0
YYD1_k127_55119_6 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006675 309.0
YYD1_k127_55119_7 SAICAR synthetase K01923 - 6.3.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004338 323.0
YYD1_k127_55119_8 PFAM AIR synthase related protein, N-terminal domain K01933 - 6.3.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000007437 283.0
YYD1_k127_55119_9 Formyl transferase K11175 - 2.1.2.2 0.0000000000000000000000000000000000000000000000000000000000000000002954 249.0
YYD1_k127_5511965_0 3-beta hydroxysteroid dehydrogenase/isomerase family K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007947 336.0
YYD1_k127_5511965_1 Permease YjgP YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001748 258.0
YYD1_k127_5511965_2 OstA-like protein - - - 0.0000003616 62.0
YYD1_k127_5511965_3 lipopolysaccharide transmembrane transporter activity K09774,K11719 - - 0.0002308 53.0
YYD1_k127_5511965_4 Lipopolysaccharide-assembly, LptC-related - - - 0.0005328 49.0
YYD1_k127_5516288_0 FAD dependent oxidoreductase K00301 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002337 414.0
YYD1_k127_5516288_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002333 353.0
YYD1_k127_5516288_2 DEAD DEAH box helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007462 326.0
YYD1_k127_5516288_3 PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) - - - 0.000000000000001753 87.0
YYD1_k127_5516288_4 Participates in initiation and elongation during chromosome replication - - - 0.00002565 55.0
YYD1_k127_5527795_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.416e-205 655.0
YYD1_k127_5527795_1 Binding-protein-dependent transport system inner membrane component K02011 - - 1.749e-203 658.0
YYD1_k127_5527795_10 Bacterial extracellular solute-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008125 309.0
YYD1_k127_5527795_11 helix_turn _helix lactose operon repressor K05499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001433 286.0
YYD1_k127_5527795_12 iron ion homeostasis K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001754 283.0
YYD1_k127_5527795_13 Xylose isomerase-like TIM barrel K22233 - - 0.00000000000000000000000000000000000000000000000000000000000000004289 232.0
YYD1_k127_5527795_14 transmembrane transport K02025,K15771 - - 0.0000000000000000000000000000000000000000000000000000000000000002182 231.0
YYD1_k127_5527795_15 glycerophosphodiester transmembrane transport K02026 - - 0.00000000000000000000000000000000000000000000000000002804 198.0
YYD1_k127_5527795_16 Xylose isomerase-like TIM barrel K06606 - 5.3.99.11 0.000000000000000000000000000000000000000000009983 176.0
YYD1_k127_5527795_17 Belongs to the hyi family K01816,K22131 - 5.3.1.22,5.3.1.35 0.00000000000000000000000000000000000000000001277 181.0
YYD1_k127_5527795_18 TIGRFAM Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily - - - 0.000000000000000000000000000000000000000233 167.0
YYD1_k127_5527795_19 Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein K00997 - 2.7.8.7 0.0000000000000000000000001043 111.0
YYD1_k127_5527795_2 Creatinine amidohydrolase K01470,K22232 - 3.5.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 504.0
YYD1_k127_5527795_20 arylsulfatase activity K01138 - - 0.00000000000000000001157 106.0
YYD1_k127_5527795_21 tetraacyldisaccharide 4'-kinase activity K09791 - - 0.000000000000002651 84.0
YYD1_k127_5527795_22 Tetratricopeptide repeat - - - 0.000000000647 71.0
YYD1_k127_5527795_3 Catalyzes the NAD(P)( )-dependent oxidation of D-glucose to D-gluconate via gluconolactone. Can utilize both NAD( ) and NADP( ) as electron acceptor. Is involved in the degradation of glucose through a - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 469.0
YYD1_k127_5527795_4 thiamine transport K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 469.0
YYD1_k127_5527795_5 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009938 419.0
YYD1_k127_5527795_6 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 390.0
YYD1_k127_5527795_7 PFAM Xylose isomerase domain-containing protein TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004935 373.0
YYD1_k127_5527795_8 Homoserine dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005126 350.0
YYD1_k127_5527795_9 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009782 361.0
YYD1_k127_5539384_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003628 399.0
YYD1_k127_5539384_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065 - 2.1.3.3,2.1.3.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002725 377.0
YYD1_k127_5539384_2 radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004295 280.0
YYD1_k127_5539384_3 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain - - - 0.0000000000000000000000000000000000000000002167 164.0
YYD1_k127_5539384_4 quinone binding - - - 0.000002993 60.0
YYD1_k127_5550763_0 Predicted permease K07089 - - 0.000000000000000000000000000000000000000000000000000000000796 208.0
YYD1_k127_5550763_1 Metal-dependent phosphohydrolase, HD region - - - 0.000000000000000000000000000000000000000000000000000000101 205.0
YYD1_k127_5550763_2 Maf-like protein K06287 - - 0.00000000000000000000000000000000000000000002538 168.0
YYD1_k127_5550763_3 DNA-binding transcription factor activity - - - 0.000000000000006076 80.0
YYD1_k127_5589702_0 ADP binding K08282,K13419 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.7.11.1 2.501e-239 756.0
YYD1_k127_5589702_1 ABC transporter K17215 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006031 527.0
YYD1_k127_5589702_2 PFAM Inosine uridine-preferring nucleoside hydrolase K01239,K01250 - 3.2.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001756 397.0
YYD1_k127_5589702_3 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002196 360.0
YYD1_k127_5589702_4 PFAM Periplasmic binding protein LacI transcriptional regulator K10439,K17202 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007275 340.0
YYD1_k127_5589702_5 Cupin 2, conserved barrel domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002307 267.0
YYD1_k127_5589702_6 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00847,K00852 - 2.7.1.15,2.7.1.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000008419 274.0
YYD1_k127_5589702_7 Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose K06726 - 5.4.99.62 0.00000000000000000000000000000000000006654 148.0
YYD1_k127_5589702_8 ADP binding K08282,K13419 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 2.7.11.1 0.000000000000000000000000000000000004345 141.0
YYD1_k127_5594371_0 Binding-protein-dependent transport system inner membrane component K02011 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 363.0
YYD1_k127_5594371_1 PFAM ABC transporter K02010,K02017,K02062,K10112,K10199,K17314 - 3.6.3.29,3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002079 361.0
YYD1_k127_5594371_2 HAD family hydrolase K01091,K06019 - 3.1.3.18,3.6.1.1 0.0000000000000000000000000000000001835 141.0
YYD1_k127_5611127_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000308 423.0
YYD1_k127_5611127_1 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007423 329.0
YYD1_k127_5611127_2 Histidine kinase K07675 - 2.7.13.3 0.000000000000001352 87.0
YYD1_k127_5633634_0 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001018 380.0
YYD1_k127_5633634_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005477 335.0
YYD1_k127_5633634_2 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.0000000000000000000000000000000000000000000000000000000000000000002337 239.0
YYD1_k127_5633634_3 luxR family K00852,K00874,K16328 GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237,GO:0050225 2.7.1.15,2.7.1.45,2.7.1.83 0.0000000000000000000000000000003881 141.0
YYD1_k127_5648407_0 von Willebrand factor (vWF) type A domain K07114 - - 0.0000000000000000000000000000000000000000000000000000000003167 226.0
YYD1_k127_5684289_0 Binding-protein-dependent transport system inner membrane component K17317 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008952 367.0
YYD1_k127_5684289_1 PFAM Binding-protein-dependent transport system inner membrane component K17316 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001488 343.0
YYD1_k127_5684289_2 Allophanate hydrolase subunit 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000921 324.0
YYD1_k127_5684289_3 amino acid-binding ACT domain protein K04518 - 4.2.1.51 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002976 300.0
YYD1_k127_5684289_4 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000006981 291.0
YYD1_k127_5684289_5 Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.000000000000000000000000000000000000003554 149.0
YYD1_k127_5684289_6 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.00000000000002195 77.0
YYD1_k127_5732821_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K02887,K03628 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008416 513.0
YYD1_k127_5732821_1 Arginyl tRNA synthetase N terminal dom K01887 - 6.1.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000878 457.0
YYD1_k127_5732821_2 Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway K00616 - 2.2.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000001412 271.0
YYD1_k127_5732821_3 TIGRFAM periplasmic serine protease, Do DeqQ family K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000006811 199.0
YYD1_k127_5732821_4 Intracellular proteinase inhibitor - - - 0.000000004195 68.0
YYD1_k127_5732821_5 Belongs to the peptidase S8 family K01361,K08652 - 3.4.21.110,3.4.21.96 0.00000009299 64.0
YYD1_k127_5732821_6 Phosphodiester glycosidase - - - 0.00002556 56.0
YYD1_k127_5740404_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001083 383.0
YYD1_k127_5740404_1 PFAM ABC transporter K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000004673 293.0
YYD1_k127_5740404_2 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000217 282.0
YYD1_k127_5740404_3 PFAM Extracellular ligand-binding receptor - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006104 293.0
YYD1_k127_5740404_4 PFAM Branched-chain amino acid transport system permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002813 275.0
YYD1_k127_5740404_5 PFAM Branched-chain amino acid transport system permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000002406 255.0
YYD1_k127_5740404_6 GDP-mannose mannosyl hydrolase activity K03574 - 3.6.1.55 0.000000000000000000000000000000007858 139.0
YYD1_k127_5740404_7 - - - - 0.000000000000000000292 94.0
YYD1_k127_5740404_8 AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.0000000001375 61.0
YYD1_k127_5742164_0 Tripartite tricarboxylate transporter TctA family K07793 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001213 597.0
YYD1_k127_5742164_1 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00169,K19070 GO:0003674,GO:0003824,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005289 540.0
YYD1_k127_5742164_2 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00170,K19071 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 494.0
YYD1_k127_5742164_3 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor K00171,K00172,K19072 GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016054,GO:0016491,GO:0016625,GO:0016903,GO:0019752,GO:0033609,GO:0033611,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0071704,GO:1901575 1.2.7.1,1.2.7.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 344.0
YYD1_k127_5742164_4 Tripartite tricarboxylate transporter family receptor K07795 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005104 308.0
YYD1_k127_5742164_5 Tripartite tricarboxylate transporter TctB family - - - 0.00000000000000000002159 97.0
YYD1_k127_5742164_6 Transcriptional regulator K05799,K13637 - - 0.00000000000000001879 85.0
YYD1_k127_57461_0 Aconitase family (aconitate hydratase) K01681 - 4.2.1.3 2.3e-223 725.0
YYD1_k127_57461_1 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 452.0
YYD1_k127_57461_2 Protein of unknown function (DUF1800) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004036 338.0
YYD1_k127_57461_3 Family of unknown function (DUF1028) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006638 330.0
YYD1_k127_57461_4 COG1131 ABC-type multidrug transport system, ATPase component K01990,K11050 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 298.0
YYD1_k127_57461_5 Uroporphyrinogen decarboxylase (URO-D) K01599 - 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000007751 283.0
YYD1_k127_57461_6 Creatinase/Prolidase N-terminal domain K08688 - 3.5.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000001271 256.0
YYD1_k127_57461_7 Protein of unknown function (DUF1501) - - - 0.0000000000000000000000000000000000000000000000000001021 194.0
YYD1_k127_57461_8 ABC-2 type transporter K01992 - - 0.00000000000000000000000000000000000000000001708 183.0
YYD1_k127_57461_9 Acetyltransferase (GNAT) domain - - - 0.000000000001946 74.0
YYD1_k127_5788144_0 PFAM Uncharacterised protein family UPF0182 K09118 - - 1.361e-242 782.0
YYD1_k127_5788144_1 Iron-sulfur cluster assembly protein - - - 0.000000000000000000002185 111.0
YYD1_k127_5788144_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000001437 67.0
YYD1_k127_5833532_0 ATPases associated with a variety of cellular activities K02049 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008719 279.0
YYD1_k127_5833532_1 Methyladenine glycosylase K01246 - 3.2.2.20 0.000000000000000000000000000000000000000000000000000000000000000000000006896 249.0
YYD1_k127_5833532_2 PFAM binding-protein-dependent transport systems inner membrane component K02050 - - 0.00000000000000000000000000000000000000000000000000000000000000004284 237.0
YYD1_k127_5833532_3 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000000000001029 181.0
YYD1_k127_5833532_4 NMT1-like family K02051 - - 0.00000000000000000000000000000000003572 148.0
YYD1_k127_584119_0 Carbamoyl-phosphate synthetase ammonia chain K01955 - 6.3.5.5 1.695e-222 704.0
YYD1_k127_584119_1 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004815 383.0
YYD1_k127_584119_2 Belongs to the CarA family K01956 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 362.0
YYD1_k127_584119_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.000000000000000000000000000000000000000000000000000000000000000000004053 255.0
YYD1_k127_584119_4 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.000000000000000000000000000000000000000000000000000000000000002851 229.0
YYD1_k127_584119_5 Ribosomal protein L11 methyltransferase K02687 - - 0.000000000000000000000000000000000000000000000000000000002595 218.0
YYD1_k127_584119_6 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070042,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.193 0.0000000000000000000000000000000000000000000000901 181.0
YYD1_k127_584119_7 TIGRFAM DNA polymerase III, delta subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000008464 160.0
YYD1_k127_584119_8 Binds directly to 16S ribosomal RNA K02968 - - 0.0000002969 55.0
YYD1_k127_5869413_0 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003032 286.0
YYD1_k127_5869413_1 nucleotidyltransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000001285 218.0
YYD1_k127_5869413_2 Peptidase family M1 domain K01256 - 3.4.11.2 0.000000000000000000000000005369 127.0
YYD1_k127_5869413_3 response to copper ion K07156 - - 0.00000000000000000000000001853 125.0
YYD1_k127_5869610_0 Proline dehydrogenase K00318 GO:0000166,GO:0003674,GO:0003824,GO:0004657,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006560,GO:0006562,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016491,GO:0016645,GO:0019752,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004468 401.0
YYD1_k127_5869610_1 Low affinity iron permease - - - 0.000000000000000000000000000000004035 132.0
YYD1_k127_5869610_2 - - - - 0.00000003397 63.0
YYD1_k127_5869610_3 Cupin 2, conserved barrel domain protein - - - 0.000002196 60.0
YYD1_k127_5873405_0 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000006416 241.0
YYD1_k127_5873405_1 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000002229 239.0
YYD1_k127_5874629_0 PFAM Type II secretion system protein E K02454,K02652 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009967 556.0
YYD1_k127_5874629_1 Sigma-70, region 4 type 2 K11618 - - 0.0000000000000000000000000000000000000000000000000000000005938 211.0
YYD1_k127_5874629_2 Histidine kinase K02480 - 2.7.13.3 0.00000000000000000000000000147 121.0
YYD1_k127_5874629_3 PFAM response regulator receiver - - - 0.0000000000000000001031 91.0
YYD1_k127_5874629_4 HD domain - - - 0.00002617 55.0
YYD1_k127_5920145_0 TIGRFAM acetyl-CoA carboxylase, biotin carboxylase K01961 - 6.3.4.14,6.4.1.2 1.447e-194 616.0
YYD1_k127_5920145_1 ABC transporter K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 478.0
YYD1_k127_5920145_2 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004162 347.0
YYD1_k127_5920145_3 TIGRFAM bifunctional phosphoglucose phosphomannose isomerase K15916 - 5.3.1.8,5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000006267 296.0
YYD1_k127_5920145_4 TIGRFAM ROK family protein K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000003006 289.0
YYD1_k127_5920145_5 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.00000000000000000000000000000000000000000000000000000000001273 216.0
YYD1_k127_5920145_6 dna methylase K07316 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000101 201.0
YYD1_k127_5920145_7 Belongs to the peptidase S8 family K14645 - - 0.0000000000000000000000000000000000000000204 162.0
YYD1_k127_5920145_8 Acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571,K01960 - 4.1.1.3,6.4.1.1 0.000000000000000000000000000000000001895 145.0
YYD1_k127_5920145_9 Intracellular proteinase inhibitor - - - 0.0000000000000003116 89.0
YYD1_k127_5964295_0 4Fe-4S double cluster binding domain K18979 - 1.17.99.6 0.000000000000000000000000000000000000000000000000000000000000000000000000003205 263.0
YYD1_k127_5964295_1 Methyltransferase type 11 K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000000004295 207.0
YYD1_k127_5964295_2 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000008887 140.0
YYD1_k127_5964295_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000006022 93.0
YYD1_k127_5964295_4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) K07755 - 2.1.1.137 0.000000000001075 70.0
YYD1_k127_5964295_5 Putative zinc-finger - - - 0.000000000004604 74.0
YYD1_k127_6048253_0 DnaB-like helicase N terminal domain K02314 GO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002072 578.0
YYD1_k127_605514_0 PFAM Transketolase central region K21417 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 450.0
YYD1_k127_605514_1 Dehydrogenase E1 component K21416 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001675 407.0
YYD1_k127_605514_2 Bacterial extracellular solute-binding protein K02012 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001724 250.0
YYD1_k127_605514_3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627,K00658 - 2.3.1.12,2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000001013 239.0
YYD1_k127_605514_4 Putative sugar-binding domain - - - 0.00000000000000000000000000000003844 132.0
YYD1_k127_605514_5 ABC-type Fe3 transport system permease component K02011 - - 0.0000000000000000001554 93.0
YYD1_k127_605514_6 Xylose isomerase-like TIM barrel K00457 - 1.13.11.27 0.00000000009138 74.0
YYD1_k127_605517_0 Pyridoxal-phosphate dependent enzyme K01697,K01738 - 2.5.1.47,4.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006711 562.0
YYD1_k127_605517_1 PFAM Cys Met metabolism pyridoxal-phosphate-dependent protein K01739,K01761 - 2.5.1.48,4.4.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002471 519.0
YYD1_k127_605517_10 Putative zinc-finger - - - 0.000001692 56.0
YYD1_k127_605517_2 Pyridoxal-phosphate dependent enzyme K12339,K21148 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004124,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0019344,GO:0019752,GO:0019842,GO:0030170,GO:0032991,GO:0033847,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0080146,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.5.1.113,2.5.1.47 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009884 370.0
YYD1_k127_605517_3 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.00000000000000000000000000000000000000000000000000003311 201.0
YYD1_k127_605517_4 belongs to the sigma-70 factor family, ECF subfamily K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.00000000000000000000000000000000000000000000000000006592 194.0
YYD1_k127_605517_5 a CheY-like receiver domain and - - - 0.00000000000000000000000000000000000000000001342 170.0
YYD1_k127_605517_6 TIGRFAM transcriptional regulator, Rrf2 family - - - 0.0000000000000000000000000000000001053 142.0
YYD1_k127_605517_7 chromosome segregation K03497 - - 0.000000000000000000000000000000004819 147.0
YYD1_k127_605517_8 PFAM pyridoxamine 5'-phosphate oxidase-related - - - 0.00000000000000000006268 102.0
YYD1_k127_605517_9 LytTr DNA-binding domain K01990 - - 0.00000000000009989 81.0
YYD1_k127_6067260_0 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001034 490.0
YYD1_k127_6067260_1 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008486 478.0
YYD1_k127_6067260_10 Yip1 domain - - - 0.0000000000000000000000000000000000000000000000754 175.0
YYD1_k127_6067260_11 Binding-protein-dependent transport system inner membrane component - - - 0.00000000000000000000000000000000000002318 164.0
YYD1_k127_6067260_12 Hydrogenase assembly chaperone hypC hupF K04653 - - 0.00000000000000000003988 92.0
YYD1_k127_6067260_2 Binding-protein-dependent transport system inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004112 385.0
YYD1_k127_6067260_3 Binding-protein-dependent transport system inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007338 348.0
YYD1_k127_6067260_4 cellulose binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006244 319.0
YYD1_k127_6067260_5 chromosome segregation K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002319 258.0
YYD1_k127_6067260_6 - - - - 0.000000000000000000000000000000000000000000000000000000000008206 219.0
YYD1_k127_6067260_7 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000001254 197.0
YYD1_k127_6067260_8 - - - - 0.0000000000000000000000000000000000000000000000000002911 206.0
YYD1_k127_6067260_9 Binding-protein-dependent transport system inner membrane component K02033 - - 0.000000000000000000000000000000000000000000000005779 196.0
YYD1_k127_6080957_0 R3H domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007718 628.0
YYD1_k127_6080957_1 DNA helicase K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000817 517.0
YYD1_k127_6080957_2 SMART PUA domain containing protein K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005388 423.0
YYD1_k127_6080957_3 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000002048 221.0
YYD1_k127_6080957_4 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000006015 212.0
YYD1_k127_6080957_5 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.000000000000000000000000000000000000000000000000000003064 200.0
YYD1_k127_6080957_6 PFAM Cys Met metabolism pyridoxal-phosphate-dependent K01739,K01761 - 2.5.1.48,4.4.1.11 0.000000000000000000000000000000000000000000001167 174.0
YYD1_k127_6080957_7 protein conserved in bacteria - - - 0.000000000000000000000000000000001098 136.0
YYD1_k127_6084453_0 TOBE domain K02010 - 3.6.3.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003509 349.0
YYD1_k127_6084453_1 PFAM binding-protein-dependent transport systems inner membrane component K02053,K11070 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003178 265.0
YYD1_k127_6084453_2 Bacterial extracellular solute-binding protein K02055 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008553 265.0
YYD1_k127_6084453_3 Binding-protein-dependent transport system inner membrane component K02054 - - 0.0000000000000000000000000000000000000000000000000000006184 209.0
YYD1_k127_6084453_4 N-methylhydantoinase A acetone carboxylase, beta subunit K01469,K01473 - 3.5.2.14,3.5.2.9 0.0000000000000000000000000000000000000000000000000004942 202.0
YYD1_k127_6084453_5 helix_turn_helix isocitrate lyase regulation - - - 0.00000000000000000000000000000000004601 146.0
YYD1_k127_6084453_6 AroM protein K14591 - - 0.00005664 49.0
YYD1_k127_6084507_0 Insulinase (Peptidase family M16) K07263 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002078 517.0
YYD1_k127_6084507_1 Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP K00763 - 6.3.4.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009244 463.0
YYD1_k127_6084507_2 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002681 330.0
YYD1_k127_6084507_3 Mediates influx of magnesium ions K03284 - - 0.00000000000000000000000000000000000000000000000000000000000000000002509 258.0
YYD1_k127_6084507_4 translation initiation inhibitor, yjgF family K04782 - 4.2.99.21 0.000000000000000000000000000000000000000000001818 179.0
YYD1_k127_6084507_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K03564 - 1.11.1.15 0.000000000000000000000000000000000000000002326 180.0
YYD1_k127_6084507_6 - - - - 0.000000000000000000000000002619 122.0
YYD1_k127_6084507_7 GCN5 family acetyltransferase - - - 0.0000000000000000000000009205 108.0
YYD1_k127_6106211_0 ATP dependent DNA ligase C terminal region K10747 GO:0000287,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0030312,GO:0033554,GO:0034641,GO:0034645,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009895 462.0
YYD1_k127_6106211_1 NfeD-like C-terminal, partner-binding K07403 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002539 342.0
YYD1_k127_6106211_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001271 273.0
YYD1_k127_6106211_3 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000001952 188.0
YYD1_k127_6106211_4 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.0000000000000000000000000000000000000000006268 173.0
YYD1_k127_6106211_5 PFAM Uncharacterised P-loop hydrolase UPF0079 K06925 - - 0.00000000000000000000000000000004307 143.0
YYD1_k127_6106211_6 Glycoprotease family K14742 - - 0.0000000000000000000000000000002867 131.0
YYD1_k127_6106211_7 PFAM Pyridoxal-phosphate dependent enzyme K05396 - 4.4.1.15 0.00000000000000000000000003736 110.0
YYD1_k127_61270_0 Aminotransferase K00812,K10907 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001448 484.0
YYD1_k127_61270_1 Amino acid kinase family K00926 - 2.7.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001643 354.0
YYD1_k127_61270_2 Dihydrodipicolinate reductase, N-terminus K21672 - 1.4.1.12,1.4.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000002638 285.0
YYD1_k127_61270_3 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000000000000000000000000000000000000000000000000000001662 233.0
YYD1_k127_61270_4 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000001081 220.0
YYD1_k127_61270_5 alcohol dehydrogenase K13953 - 1.1.1.1 0.00000000000000000000000000000000000000000000000000000002599 199.0
YYD1_k127_61270_6 competence protein - - - 0.000000000000000000000000000000000000000002551 164.0
YYD1_k127_6129310_0 The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine K01696 - 4.2.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 571.0
YYD1_k127_6129310_1 Protein of unknown function (DUF1646) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001913 338.0
YYD1_k127_6129310_2 The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate K01695 - 4.2.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000309 267.0
YYD1_k127_6129310_3 Belongs to the TrpF family K01817 - 5.3.1.24 0.000000000000000000000000000000000000000237 153.0
YYD1_k127_6129310_4 Transporter, CPA2 family - - - 0.000000000000000000000008264 116.0
YYD1_k127_6129310_5 NUDIX domain K03574 - 3.6.1.55 0.0000000000000000000121 102.0
YYD1_k127_6135002_0 TIGRFAM hydrolase, TatD family K03424 - - 0.0000000000000000000000000000000000000002726 154.0
YYD1_k127_6135002_1 Peptidase family M48 - - - 0.0000000000000000000000000000000000000007429 165.0
YYD1_k127_6135002_2 Belongs to the ComB family K05979 GO:0003674,GO:0003824,GO:0016829,GO:0016830,GO:0016831,GO:0050545 3.1.3.71 0.0000000000000000000000000000000001752 149.0
YYD1_k127_6135002_3 BetI-type transcriptional repressor, C-terminal - - - 0.00000000000000112 78.0
YYD1_k127_6138509_0 Belongs to the aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000263 404.0
YYD1_k127_6138509_1 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 GO:0008150,GO:0040007 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007317 358.0
YYD1_k127_6138509_2 Protein of unknown function (DUF971) K03593 - - 0.00000000000000000003385 94.0
YYD1_k127_6138791_0 PFAM metal-dependent phosphohydrolase HD sub domain - - - 0.000000000000000000000000000000000000000000000000006368 200.0
YYD1_k127_6138791_1 RibD C-terminal domain K00082 - 1.1.1.193 0.00001418 50.0
YYD1_k127_6138791_2 deoxyhypusine monooxygenase activity - - - 0.00005369 56.0
YYD1_k127_6158055_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0030163,GO:0042623,GO:0042802,GO:0043170,GO:0044238,GO:0044464,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575 - 2.527e-243 770.0
YYD1_k127_6158055_1 Histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005074 554.0
YYD1_k127_6158055_2 Isochorismatase family K09020 - 3.5.1.110 0.000000000000000000000000000000000000000000000000000000000000000000000000002978 257.0
YYD1_k127_6158055_3 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 0.0000000000000000000000000000000000000000000000000000000000000000000000009929 269.0
YYD1_k127_6158055_4 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K04075 - 6.3.4.19 0.00000000000000000000000000000000000000003259 165.0
YYD1_k127_6158055_5 membrane - - - 0.0003713 50.0
YYD1_k127_618263_0 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 439.0
YYD1_k127_618263_1 Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate K00620 - 2.3.1.1,2.3.1.35 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 385.0
YYD1_k127_618263_2 Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde K00145 - 1.2.1.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008655 383.0
YYD1_k127_618263_3 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003881 279.0
YYD1_k127_618263_4 Protein of unknown function (DUF402) K09145 - - 0.0000000002202 66.0
YYD1_k127_6273057_0 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009378 546.0
YYD1_k127_6273057_1 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000005777 216.0
YYD1_k127_6273057_2 Trypsin-like serine protease - - - 0.00000000000000000000000000000000000000001606 164.0
YYD1_k127_6273057_3 Nudix hydrolase - - - 0.000000000000000000000582 102.0
YYD1_k127_6273057_4 Adenine deaminase C-terminal domain K01486 GO:0003674,GO:0003824,GO:0006040,GO:0006044,GO:0006046,GO:0008150,GO:0008152,GO:0008448,GO:0009056,GO:0016787,GO:0016810,GO:0016811,GO:0019213,GO:0046348,GO:0071704,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901575 3.5.4.2 0.000000000000006193 77.0
YYD1_k127_6277734_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 5.434e-214 698.0
YYD1_k127_6277734_1 Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily K01465 - 3.5.2.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 481.0
YYD1_k127_6277734_2 IMP dehydrogenase GMP reductase K00088 - 1.1.1.205 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003538 415.0
YYD1_k127_6277734_3 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000293 234.0
YYD1_k127_6277734_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 GO:0003674,GO:0003824,GO:0004590,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.23 0.00000000000000000000000000000000000000000000000000000002865 211.0
YYD1_k127_6277734_5 PFAM Glycosyl transferase, family 2 K00721,K00786 - 2.4.1.83 0.00000000000000000000000000000003772 141.0
YYD1_k127_63390_0 dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.0000000000000000000000000000000000000000000000000000001424 217.0
YYD1_k127_63390_1 glycosyl transferase family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000004119 190.0
YYD1_k127_63390_2 Permease, YjgP YjgQ family K11720 - - 0.0000000000000000000000004827 108.0
YYD1_k127_63390_3 Protein of unknown function (DUF3084) - - - 0.000000000000000007753 98.0
YYD1_k127_6353510_0 ABC transporter transmembrane region K06147 - - 2.179e-194 622.0
YYD1_k127_6353510_1 ABC transporter transmembrane region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006321 564.0
YYD1_k127_6353510_2 phosphoglycerate mutase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000996 424.0
YYD1_k127_6353510_3 Belongs to the 5'-nucleotidase family K01081,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002652 390.0
YYD1_k127_6353510_4 Protein of unknown function (DUF1343) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004266 309.0
YYD1_k127_6353510_5 Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan K01778 - 5.1.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000001282 264.0
YYD1_k127_6353510_6 D-aminopeptidase K16203 - - 0.000000000000000000000000000000000000000000000000000000000000000000001945 246.0
YYD1_k127_6353510_7 PFAM MazG nucleotide pyrophosphohydrolase domain - - - 0.0000000000000000000000000001434 130.0
YYD1_k127_6375028_0 PFAM Methylmalonyl-CoA mutase K01847,K01848 - 5.4.99.2 1.223e-213 675.0
YYD1_k127_6375028_1 Alanine-glyoxylate amino-transferase K05825 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006606 385.0
YYD1_k127_6375028_2 ArgK protein K07588 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 306.0
YYD1_k127_6375028_3 Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182 0.00000000000000000000000000000000000000000000000000000000000000003135 246.0
YYD1_k127_6375028_4 G5 domain protein - - - 0.0000000000000000000000000000000000000000000000000000000002099 218.0
YYD1_k127_6375028_5 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.0000000000000000000000000000000000000000000000172 181.0
YYD1_k127_6375028_6 Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.000000000000000000000000000000258 132.0
YYD1_k127_6375028_7 TIGRFAM Oxaloacetate decarboxylase, alpha subunit K01571 - 4.1.1.3 0.00000003252 56.0
YYD1_k127_6383651_0 glyoxalase bleomycin resistance protein dioxygenase K15975 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008498 393.0
YYD1_k127_6383651_1 Bacterial extracellular solute-binding protein K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001095 395.0
YYD1_k127_6383651_2 TOBE domain K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000149 385.0
YYD1_k127_6383651_3 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 - 3.4.16.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007321 357.0
YYD1_k127_6383651_4 Binding-protein-dependent transport system inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006421 297.0
YYD1_k127_6383651_5 Binding-protein-dependent transport system inner membrane component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004297 288.0
YYD1_k127_6383651_6 glycoside hydrolase family 37 - - - 0.000000000000000000003935 104.0
YYD1_k127_6383651_7 - - - - 0.0009664 49.0
YYD1_k127_6383940_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001964 522.0
YYD1_k127_6383940_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 308.0
YYD1_k127_6383940_2 methyltransferase small K00564 - 2.1.1.172 0.000000000000000000000000000000000000000000000000000002 200.0
YYD1_k127_6383940_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 0.00000000000000000000000000000000000000000000009031 178.0
YYD1_k127_6383940_4 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000007242 139.0
YYD1_k127_6383940_5 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.000000000000000000000000000004748 121.0
YYD1_k127_6383940_6 Belongs to the UPF0109 family K06960 - - 0.00000000000003804 77.0
YYD1_k127_6383940_8 Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein K09787 - - 0.000000000005857 70.0
YYD1_k127_6384781_0 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 514.0
YYD1_k127_6384781_1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007022 415.0
YYD1_k127_6384781_2 Proline dehydrogenase K00318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 309.0
YYD1_k127_6384781_3 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000008228 304.0
YYD1_k127_6384781_4 Histidine Phosphotransfer domain K03413,K07662,K07667,K11443 - - 0.00000000000000000000000000000000000000000000000000000000000000005933 256.0
YYD1_k127_6384781_5 CoA binding domain K06929 - - 0.0000000000000000000000000000000000000000000000004162 183.0
YYD1_k127_6384781_6 Belongs to the UPF0337 (CsbD) family - - - 0.0000000000000002032 86.0
YYD1_k127_6384781_7 Protein of unknown function (DUF3096) - - - 0.000000001044 63.0
YYD1_k127_6384781_8 antisigma factor binding - - - 0.0000003045 59.0
YYD1_k127_6389089_0 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009975 394.0
YYD1_k127_6389089_1 Psort location CytoplasmicMembrane, score 10.00 - - - 0.000000000000000000000000000000000000000000000000007568 205.0
YYD1_k127_6408429_0 PFAM glycosyl transferase, family 51 K05366,K21464 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 561.0
YYD1_k127_6408429_1 PFAM Polyketide cyclase dehydrase and lipid transport - - - 0.00000000000000000000000000000002333 135.0
YYD1_k127_6408429_2 Beta-eliminating lyase K13010 - 2.6.1.102 0.0000000000000000000000007126 112.0
YYD1_k127_6408429_3 Protein of unknown function (DUF2662) - - - 0.0000000000000006023 91.0
YYD1_k127_6479458_0 Winged helix DNA-binding domain K09927 - - 0.000000000000000000000000000000000000000000000000000136 195.0
YYD1_k127_6479458_1 B3/4 domain - - - 0.0000000000000000000000000000000000003687 154.0
YYD1_k127_6479458_2 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K02549,K19802,K21624 - 4.2.1.113,4.2.1.171,5.1.1.20 0.000000000000000000000000000007962 122.0
YYD1_k127_6500764_0 TIGRFAM oligoendopeptidase, M3 family K08602 - - 8.698e-198 635.0
YYD1_k127_6500764_1 Glycosyl hydrolase-like 10 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007277 262.0
YYD1_k127_6500764_2 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000002106 176.0
YYD1_k127_6521324_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01869 - 6.1.1.4 0.0 1121.0
YYD1_k127_6521324_1 leucyl-tRNA aminoacylation K01869 GO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.4 5.607e-234 749.0
YYD1_k127_6521324_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000254 381.0
YYD1_k127_6521324_3 Citrate transporter - - - 0.0000000000000000000000000000000000000001883 159.0
YYD1_k127_6521324_4 Periplasmic binding protein K02016 - - 0.00000000000000000000000000001235 133.0
YYD1_k127_6521324_5 - - - - 0.00002454 50.0
YYD1_k127_6529569_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008372 366.0
YYD1_k127_6529569_1 PFAM binding-protein-dependent transport systems inner membrane component K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002799 304.0
YYD1_k127_6529569_2 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000008324 276.0
YYD1_k127_6529569_3 Beta-lactamase class C and other penicillin binding proteins - - - 0.0000000000000000000000000000000000000000000000000000000000000000000009094 261.0
YYD1_k127_6529569_4 Amidohydrolase family K01443 - 3.5.1.25 0.00000000000000000000000000000000000000004528 158.0
YYD1_k127_6529569_5 BadF BadG BcrA BcrD K00884,K02616 - 2.7.1.59 0.000000000000000000000000000167 131.0
YYD1_k127_6529569_6 Glycosyl transferase 4-like - - - 0.000000000000000000333 93.0
YYD1_k127_6529569_7 Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate K07106 - 4.2.1.126 0.000000009089 63.0
YYD1_k127_6570199_0 Cytochrome b(N-terminal)/b6/petB K00410,K00412,K02635,K02637 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001878 407.0
YYD1_k127_6570199_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007285 349.0
YYD1_k127_6570199_11 membrane protein (DUF2078) K08982 - - 0.00007475 49.0
YYD1_k127_6570199_12 PFAM oxidoreductase molybdopterin binding - - - 0.0005006 48.0
YYD1_k127_6570199_13 cell redox homeostasis K02199,K03671,K03672 - 1.8.1.8 0.0007204 44.0
YYD1_k127_6570199_2 Cytochrome c554 and c-prime K03620 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005446 341.0
YYD1_k127_6570199_3 PFAM response regulator receiver - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001887 259.0
YYD1_k127_6570199_4 histidine kinase HAMP region domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005498 253.0
YYD1_k127_6570199_5 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000002497 229.0
YYD1_k127_6570199_6 AAA domain, putative AbiEii toxin, Type IV TA system K01990,K02193 - 3.6.3.41 0.0000000000000000000000000000000000000000000000000000000001519 211.0
YYD1_k127_6570199_7 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.00000000000000000000000000000000000000000000001935 179.0
YYD1_k127_6570199_8 Rieske [2Fe-2S] domain K00411,K02636,K03886 - 1.10.2.2,1.10.9.1 0.00000000000000000000000000000000000000000001648 172.0
YYD1_k127_6570199_9 peptidase - - - 0.00000000000000000000000000000000007539 147.0
YYD1_k127_6576936_0 Cytochrome c oxidase subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000003449 246.0
YYD1_k127_6576936_1 DoxX K16937 - 1.8.5.2 0.000000000000000000000000000000000000000000000000000000000000000001078 233.0
YYD1_k127_6576936_2 cytochrome c oxidase, subunit III K02276 - 1.9.3.1 0.00000000000000000000000000000000004936 143.0
YYD1_k127_6576936_3 protein histidine kinase activity K07675 - 2.7.13.3 0.0000000000000000000000000328 118.0
YYD1_k127_6576936_5 His Kinase A (phosphoacceptor) domain - - - 0.000000005181 64.0
YYD1_k127_6576936_6 STAS domain - - - 0.0000004742 60.0
YYD1_k127_663336_0 MatE - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002353 535.0
YYD1_k127_663336_1 outer membrane efflux protein - - - 0.0000000000000000000000000003983 132.0
YYD1_k127_663336_2 PFAM regulatory protein, ArsR - - - 0.000000000000000000000000004112 118.0
YYD1_k127_6642610_0 Nitronate monooxygenase K00459 - 1.13.12.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007029 385.0
YYD1_k127_6642610_1 Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline K00286 - 1.5.1.2 0.000000000000000000000000000000000000000000000000000003752 203.0
YYD1_k127_6642610_2 Methyltransferase K07755 - 2.1.1.137 0.000000000000000000000000000000000000000000000000000005386 198.0
YYD1_k127_6642610_3 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.00000000000000000000000002861 116.0
YYD1_k127_6642610_4 Involved in the tonB-independent uptake of proteins - - - 0.00000000000000000000000003228 126.0
YYD1_k127_6642610_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000003571 104.0
YYD1_k127_6642610_6 Formamidopyrimidine-DNA glycosylase N-terminal domain K10563 - 3.2.2.23,4.2.99.18 0.0000000000000000004806 89.0
YYD1_k127_6642610_7 YtxH-like protein - - - 0.00002311 52.0
YYD1_k127_6667197_0 protease-associated PA domain protein - - - 7.459e-210 667.0
YYD1_k127_6667197_1 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002703 391.0
YYD1_k127_6667197_2 COG0444 ABC-type dipeptide oligopeptide nickel transport system, ATPase component K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002783 347.0
YYD1_k127_6667197_3 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001075 365.0
YYD1_k127_6667197_4 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001432 311.0
YYD1_k127_6667197_5 ABC-type dipeptide oligopeptide nickel transport system, permease component K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000009944 245.0
YYD1_k127_6667197_6 of poly-gamma-glutamate biosynthesis (Capsule formation) K07282 - - 0.0000000000000000000000000000000000000000000000000000004285 207.0
YYD1_k127_6667197_7 COG0601 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000001519 190.0
YYD1_k127_6667197_8 biotin apo-protein ligase-related - - - 0.000000000007022 79.0
YYD1_k127_6740736_0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 - 4.1.1.98 0.0000000000000000000000000000000000000000000000000000000000000000000000000001673 274.0
YYD1_k127_6740736_1 Extracellular solute-binding protein, family 5 K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000002115 237.0
YYD1_k127_6740736_2 NADP oxidoreductase coenzyme F420-dependent K06988 - 1.5.1.40 0.00000000000000000000000000000000000000002592 160.0
YYD1_k127_6740736_3 Glyoxalase-like domain - - - 0.0000000000000000000000000009212 122.0
YYD1_k127_6740736_4 Belongs to the TPP enzyme family K01652 - 2.2.1.6 0.00001123 50.0
YYD1_k127_6767352_0 Amidohydrolase family K06015 - 3.5.1.81 3.497e-197 631.0
YYD1_k127_6767352_1 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003004 459.0
YYD1_k127_6767352_2 Belongs to the UDP-N-acetylglucosamine 2-epimerase family K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 444.0
YYD1_k127_6767352_3 Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P) K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 421.0
YYD1_k127_6767352_4 SpoIVB peptidase S55 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006109 275.0
YYD1_k127_6767352_5 Glycosyltransferase, group 4 family K02851 - 2.7.8.33,2.7.8.35 0.00000000000000000000000000000000000000000000000000000000000000000000000002454 263.0
YYD1_k127_6767352_6 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.0000000000000000000000006214 122.0
YYD1_k127_6767352_7 amine dehydrogenase activity - - - 0.000000000009172 68.0
YYD1_k127_6767352_8 ligase activity, forming carbon-carbon bonds - - - 0.0007322 46.0
YYD1_k127_677196_0 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001325 281.0
YYD1_k127_677196_1 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000000000000000000000000000001065 253.0
YYD1_k127_677196_2 Belongs to the arginase family K01480 - 3.5.3.11 0.0000000000000000000000000000000000000000000000000000000000003831 226.0
YYD1_k127_677196_3 MazG nucleotide pyrophosphohydrolase domain - - - 0.0000000000000000000000005465 113.0
YYD1_k127_677196_4 PFAM Pyruvoyl-dependent arginine decarboxylase K02626 - 4.1.1.19 0.0000000000000000002326 90.0
YYD1_k127_6799072_0 the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA K03664 - - 0.00000000000000000000000000000000000000000000000000003132 198.0
YYD1_k127_6799072_1 Molybdenum cofactor synthesis domain - - - 0.0000000000000000000000000000000000000000000000009174 179.0
YYD1_k127_6799072_2 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.000000000000000000000004478 102.0
YYD1_k127_6799072_3 Thioesterase superfamily protein - - - 0.000000000000000000007638 104.0
YYD1_k127_6799072_4 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.0000000000000003919 87.0
YYD1_k127_72998_0 PFAM Amidohydrolase family K01468 - 3.5.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001573 445.0
YYD1_k127_72998_1 PFAM Formiminotransferase K00603 - 2.1.2.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001669 288.0
YYD1_k127_72998_2 histidine kinase A domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000285 288.0
YYD1_k127_72998_3 Formiminotransferase-cyclodeaminase - - - 0.00000000000000000000000000000000002242 142.0
YYD1_k127_72998_4 Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin K01633 - 1.13.11.81,4.1.2.25,5.1.99.8 0.0000000000000000000000000000442 123.0
YYD1_k127_754191_0 aminopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005671 416.0
YYD1_k127_754191_1 Ketopantoate reductase PanE/ApbA C terminal - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 321.0
YYD1_k127_754191_2 succinylglutamate desuccinylase aspartoacylase K06987 - - 0.00000000000000000000000000000000000000000005426 180.0
YYD1_k127_754191_3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis K00059 - 1.1.1.100 0.000000000000000003572 85.0
YYD1_k127_765616_0 Part of the tripartite ATP-independent periplasmic (TRAP) transport system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 392.0
YYD1_k127_765616_1 TRAP-type mannitol chloroaromatic compound transport system, small permease component - - - 0.000000000000000000000000000000000000000000000000000000101 200.0
YYD1_k127_765616_2 TIGRFAM TRAP transporter, DctM subunit - - - 0.000000625 58.0
YYD1_k127_765616_3 membrane protein (DUF2207) - - - 0.0001335 49.0
YYD1_k127_769780_0 Belongs to the class-I aminoacyl-tRNA synthetase family K04566 - 6.1.1.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101 370.0
YYD1_k127_769780_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 - 1.5.1.5,3.5.4.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009161 305.0
YYD1_k127_769780_2 Belongs to the folylpolyglutamate synthase family K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001381 311.0
YYD1_k127_769780_3 - - - - 0.0000000000000000000000000000000007321 136.0
YYD1_k127_770553_0 helicase activity - - - 1.229e-309 968.0
YYD1_k127_770553_1 Glycosyl hydrolase-like 10 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004137 460.0
YYD1_k127_770553_2 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 0.000000000000000000000000000000000000000000000006433 188.0
YYD1_k127_770553_3 TspO/MBR family - - - 0.0000000000000000000000000000000000000000000003553 179.0
YYD1_k127_770553_5 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.0000000000000000000000000009522 114.0
YYD1_k127_793798_0 PFAM glycoside hydrolase, family 1 K05350 - 3.2.1.21 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003228 292.0
YYD1_k127_793798_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000001126 137.0
YYD1_k127_793798_2 Cysteine-rich secretory protein family - - - 0.0000000000000000000000003394 111.0
YYD1_k127_793798_3 - - - - 0.0000000000000003645 89.0
YYD1_k127_799295_0 Efflux ABC transporter permease protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009106 402.0
YYD1_k127_799295_1 Dehydrogenase reductase sdr K00059 - 1.1.1.100 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003573 280.0
YYD1_k127_799295_2 ATPases associated with a variety of cellular activities K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002976 279.0
YYD1_k127_799295_3 Belongs to the peptidase S16 family K04076 - 3.4.21.53 0.0000000000000000000000000000000000000000000000000001426 188.0
YYD1_k127_799295_4 Cation efflux family K16264 - - 0.0000000000000000000000000000000000000000000000615 178.0
YYD1_k127_799295_5 thiolester hydrolase activity - - - 0.0000000000000000000000001509 117.0
YYD1_k127_799295_6 Outer membrane efflux protein - - - 0.000000000000000000000001117 118.0
YYD1_k127_799295_7 HlyD membrane-fusion protein of T1SS K02005 - - 0.00000000000000000000000151 119.0
YYD1_k127_8180_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003115 430.0
YYD1_k127_8180_1 Belongs to the DegT DnrJ EryC1 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004279 381.0
YYD1_k127_8180_10 glycosyl transferase family 8 - - - 0.000000001937 70.0
YYD1_k127_8180_11 O-antigen polysaccharide polymerase Wzy - - - 0.00004328 51.0
YYD1_k127_8180_2 Transferase hexapeptide repeat containing protein K13018 - 2.3.1.201 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002225 343.0
YYD1_k127_8180_3 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 357.0
YYD1_k127_8180_4 dehydrogenase, E1 component K00161,K21416 - 1.2.4.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001744 295.0
YYD1_k127_8180_5 transferase hexapeptide K13018 - 2.3.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000005457 259.0
YYD1_k127_8180_6 Bacterial sugar transferase K16557 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000005886 256.0
YYD1_k127_8180_7 Glycosyl transferase 4-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000647 248.0
YYD1_k127_8180_8 NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.0000000000000000000000000000000000000007171 163.0
YYD1_k127_8180_9 Glycosyl hydrolase 36 superfamily, catalytic domain K00702,K13688 - 2.4.1.20 0.0000000000000000000000001275 118.0
YYD1_k127_828606_0 Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose K01711 - 4.2.1.47 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003592 542.0
YYD1_k127_828606_1 Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction K02377 - 1.1.1.271 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008956 471.0
YYD1_k127_828606_2 Polysaccharide biosynthesis protein - - - 0.0000000000000000000000000000000000000000000000000000000265 222.0
YYD1_k127_828606_3 protein methyltransferase activity - - - 0.000000000000000000000000000000000000000000000000001049 210.0
YYD1_k127_828606_4 methyltransferase - - - 0.00000002149 66.0
YYD1_k127_849982_0 Malic enzyme, NAD binding domain K00029 - 1.1.1.40 1.426e-290 911.0
YYD1_k127_849982_1 ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007319 391.0
YYD1_k127_849982_2 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 - 1.4.1.13,1.4.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002282 396.0
YYD1_k127_849982_3 4Fe-4S dicluster domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001418 323.0
YYD1_k127_849982_4 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000002116 173.0
YYD1_k127_849982_5 BON domain - - - 0.000000000000000000000000003949 123.0
YYD1_k127_877614_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 607.0
YYD1_k127_877614_1 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005042 545.0
YYD1_k127_877614_2 Aminotransferase class-III K07250 - 2.6.1.19,2.6.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009533 518.0
YYD1_k127_877614_3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0070041,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.190 0.000000000000000000000000000000000000000000000000003249 203.0
YYD1_k127_877614_4 COG1173 ABC-type dipeptide oligopeptide nickel transport systems permease components K02034 - - 0.0000000000000000000000000000000001449 133.0
YYD1_k127_877614_5 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.0000000000000000001358 92.0
YYD1_k127_881522_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01840,K15778 - 5.4.2.2,5.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004581 570.0
YYD1_k127_881522_1 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane K04744 - - 0.000000000000000132 94.0
YYD1_k127_881522_2 COGs COG0763 Lipid A disaccharide synthetase K00748 - 2.4.1.182 0.00009106 46.0
YYD1_k127_886666_0 ABC transporter K06861 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000009032 299.0
YYD1_k127_886666_1 Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000001107 200.0
YYD1_k127_886666_2 Permease, YjgP YjgQ family K11720 - - 0.000000000000000000000000000000000000006077 166.0
YYD1_k127_886666_3 Lipopolysaccharide-assembly, LptC-related - - - 0.00000005613 62.0
YYD1_k127_903069_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 5.673e-228 732.0
YYD1_k127_903069_1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate K00756 GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009032,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0044424,GO:0044444,GO:0044464 2.4.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 514.0
YYD1_k127_903069_10 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000001153 235.0
YYD1_k127_903069_11 type II and III secretion system protein K02507,K02666 - - 0.000000000000000000000000000000000000000000000000001205 200.0
YYD1_k127_903069_12 Hydrolase, nudix family K01515 - 3.6.1.13 0.0000000000000000000000000000000000000001793 155.0
YYD1_k127_903069_13 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000000000009002 121.0
YYD1_k127_903069_14 Belongs to the acylphosphatase family K01512 GO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818 3.6.1.7 0.0000000000000000000002882 99.0
YYD1_k127_903069_15 Calcineurin-like phosphoesterase K01090 - 3.1.3.16 0.0000000000000000001782 89.0
YYD1_k127_903069_16 TIGRFAM prepilin-type N-terminal cleavage methylation domain K02246,K08084 - - 0.00001807 54.0
YYD1_k127_903069_2 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002739 485.0
YYD1_k127_903069_3 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 397.0
YYD1_k127_903069_4 PFAM peptidase M24 K01262,K01271 - 3.4.11.9,3.4.13.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001485 391.0
YYD1_k127_903069_5 integrase domain protein SAM domain protein K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 317.0
YYD1_k127_903069_6 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K00772,K03783 - 2.4.2.1,2.4.2.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 319.0
YYD1_k127_903069_7 Belongs to the FPP GGPP synthase family K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003624 284.0
YYD1_k127_903069_8 FtsJ-like methyltransferase K06442 - 2.1.1.226,2.1.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000005915 268.0
YYD1_k127_903069_9 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.000000000000000000000000000000000000000000000000000000000000000000000003677 248.0
YYD1_k127_905419_0 GlcNAc-PI de-N-acetylase K01463 - - 0.000000000000000000000000000000000000000000000000000000000000000000000148 256.0
YYD1_k127_905419_1 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000005702 214.0
YYD1_k127_905419_2 - - - - 0.00000000000000000000000000000000000000000000000000001907 210.0
YYD1_k127_905419_3 ATPases associated with a variety of cellular activities K02193 - 3.6.3.41 0.000000000000000000002409 106.0
YYD1_k127_914989_0 DNA ligase K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000723 440.0
YYD1_k127_914989_1 Protein of unknown function DUF72 - - - 0.00000000000000000000000000000000000000000000000000000002586 204.0
YYD1_k127_931809_0 Protein of unknown function (DUF1116) K02381 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000259 582.0
YYD1_k127_931809_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005595 553.0
YYD1_k127_931809_10 Haloacid dehalogenase-like hydrolase - - - 0.000000000000000000000000001512 123.0
YYD1_k127_931809_2 CoA-ligase K02381 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 499.0
YYD1_k127_931809_3 acyl-CoA transferase carnitine dehydratase K18702 - 2.8.3.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003392 464.0
YYD1_k127_931809_4 Binding-protein-dependent transport system inner membrane component K02033,K15585 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004222 396.0
YYD1_k127_931809_5 Binding-protein-dependent transport system inner membrane component K02034 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008861 357.0
YYD1_k127_931809_6 Binding-protein-dependent transport system inner membrane component K02033,K13890 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000685 346.0
YYD1_k127_931809_7 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 343.0
YYD1_k127_931809_8 PFAM Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001346 333.0
YYD1_k127_931809_9 PFAM Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001733 289.0
YYD1_k127_959905_0 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008092 379.0
YYD1_k127_959905_1 Belongs to the aldehyde dehydrogenase family K22187 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 344.0
YYD1_k127_959905_2 MoaE protein K03635,K21142 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0016740,GO:0016782,GO:0016783,GO:0018130,GO:0019538,GO:0019637,GO:0019693,GO:0030366,GO:0032324,GO:0034641,GO:0042278,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657 2.8.1.12 0.0000000000001321 70.0
YYD1_k127_959905_3 ParE toxin of type II toxin-antitoxin system, parDE K06218 - - 0.000000001835 61.0
YYD1_k127_959905_4 PFAM OstA family protein K09774 - - 0.00000001901 64.0
YYD1_k127_959905_5 Tetratricopeptide repeat - - - 0.00000168 60.0
YYD1_k127_959905_6 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.000005122 53.0
YYD1_k127_976121_0 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006572 554.0
YYD1_k127_976121_1 Dehydrogenase K00248 - 1.3.8.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 410.0
YYD1_k127_976121_2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001793 378.0
YYD1_k127_976121_3 Belongs to the thiolase family K00626,K00632 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006084 354.0
YYD1_k127_976121_4 Electron transfer flavoprotein K03521 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016491,GO:0022900,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114 - 0.0000000000000000000000000000000000000000000000000000000000002897 220.0
YYD1_k127_976121_5 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.00000000000000000000000000000000000000000000000001723 186.0
YYD1_k127_976121_6 Electron transfer flavoprotein K03522 - - 0.000000000000000000000000000004101 128.0
YYD1_k127_976121_7 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.00000000000000000000001344 113.0
YYD1_k127_976121_8 AAA domain K01090 - 3.1.3.16 0.000000000000001092 81.0
YYD1_k127_976121_9 Protein of unknown function (DUF1444) - - - 0.000001259 60.0
YYD1_k127_999949_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004839 371.0
YYD1_k127_999949_1 DEAD/H associated K03724 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000549 321.0
YYD1_k127_999949_2 Belongs to the thiolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001239 290.0
YYD1_k127_999949_3 PFAM beta-lactamase domain protein - - - 0.00000000000000000000000000000000000000000000000000000006386 214.0