Overview

ID MAG04618
Name YYD1_bin.14
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Gemmatimonadota
Class Gemmatimonadetes
Order Gemmatimonadales
Family GWC2-71-9
Genus SZUA-320
Species SZUA-320 sp035709185
Assembly information
Completeness (%) 65.64
Contamination (%) 0.46
GC content (%) 68.0
N50 (bp) 4,836
Genome size (bp) 1,879,791

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes1855

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1015151_0 Peptidase dimerisation domain K12941 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006128 530.0
YYD1_k127_1015151_1 cAMP biosynthetic process K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002723 430.0
YYD1_k127_1015151_2 PFAM FMN-dependent dehydrogenase K00101,K16422 - 1.1.2.3,1.1.3.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006571 381.0
YYD1_k127_1015151_3 Prolyl oligopeptidase family K01303 - 3.4.19.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003707 319.0
YYD1_k127_1015151_4 Cytidine monophosphokinase K00876 GO:0003674,GO:0003824,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009224,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0043771,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046035,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 2.7.1.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000005394 261.0
YYD1_k127_1044402_0 Alpha-L-fucosidase K01206 - 3.2.1.51 1.289e-197 625.0
YYD1_k127_1044402_1 Fibronectin type III-like domain K05349 - 3.2.1.21 0.0000000000000000000000000000000000000001895 153.0
YYD1_k127_1044402_2 Sodium:solute symporter family - - - 0.0000000000002624 70.0
YYD1_k127_10710_0 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003351 489.0
YYD1_k127_10710_1 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 466.0
YYD1_k127_10710_2 Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring K03590 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008729 422.0
YYD1_k127_10710_3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007414 419.0
YYD1_k127_10710_4 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006628 391.0
YYD1_k127_10710_5 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002351 311.0
YYD1_k127_10710_6 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.00000000000000000000000000000000000000000000000000000000000000000000000000277 279.0
YYD1_k127_10710_7 Cell cycle protein K03588 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003835 265.0
YYD1_k127_10710_8 Penicillin binding protein transpeptidase domain K03587 - 3.4.16.4 0.000000000000000000008751 99.0
YYD1_k127_10710_9 Cell division protein FtsQ K03589 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0008150,GO:0016020,GO:0016021,GO:0031224,GO:0031226,GO:0040007,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0071944 - 0.00002869 54.0
YYD1_k127_112414_0 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004569 413.0
YYD1_k127_112414_1 Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P) K08963 - 5.3.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005241 375.0
YYD1_k127_112414_2 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.000000000000000000000000000000000000000000000000000000000000000000004611 241.0
YYD1_k127_112414_3 PFAM class II aldolase adducin family protein K01628 - 4.1.2.17 0.0000000000000000000000000000000000000000000000000001407 206.0
YYD1_k127_112414_4 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000001018 106.0
YYD1_k127_112414_5 - - - - 0.00000000008102 63.0
YYD1_k127_1142664_0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K00134 - 1.2.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003981 487.0
YYD1_k127_1142664_1 Phosphoglycerate kinase K00927 - 2.7.2.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006574 493.0
YYD1_k127_1142664_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.00000000000000000000000000000002131 134.0
YYD1_k127_1142664_3 Phosphoribosyl transferase domain - - - 0.00000000000000000000000000001943 130.0
YYD1_k127_1142664_4 Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) K00014 - 1.1.1.25 0.00000000000005019 76.0
YYD1_k127_1143499_0 PFAM Rhodanese domain protein K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003393 427.0
YYD1_k127_1143499_1 -O-antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000002178 258.0
YYD1_k127_1143499_2 - - - - 0.00000000000000000000000000001909 124.0
YYD1_k127_1159217_0 DALR_2 K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001609 385.0
YYD1_k127_1159217_1 mechanosensitive ion channel K22044 - - 0.000000000000000000000000000000000000000000000000000000008867 208.0
YYD1_k127_1162348_0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 - 3.5.99.6 2.161e-296 921.0
YYD1_k127_1162348_1 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000007527 220.0
YYD1_k127_1162348_2 Protein of unknown function, DUF - - - 0.0000000000000000000000000000000000000000000004919 182.0
YYD1_k127_1162348_3 Protein of unknown function (DUF2911) - - - 0.0000000000000000000000000000003988 130.0
YYD1_k127_1162348_4 Belongs to the acetyltransferase family. ArgA subfamily - - - 0.00000000000000000000000000001439 128.0
YYD1_k127_1162348_5 CS domain K13993 - - 0.0000000000000000000000000001123 125.0
YYD1_k127_1180094_0 PFAM peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01354 - 3.4.21.83 1.452e-201 649.0
YYD1_k127_1180094_1 Sulfite exporter TauE/SafE - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001039 265.0
YYD1_k127_1186204_0 PFAM peptidase S45 penicillin amidase K01434,K07116 - 3.5.1.11,3.5.1.97 1.008e-210 674.0
YYD1_k127_1186204_1 PFAM amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001978 280.0
YYD1_k127_1186204_2 PFAM amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000009728 261.0
YYD1_k127_1196274_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005166 414.0
YYD1_k127_1196274_1 Phosphatidylethanolamine-binding protein K06910 - - 0.00000000000000000000000000000000000000000000000000000000000000001378 228.0
YYD1_k127_1196274_2 Phosphoribosyl transferase domain - - - 0.0000000000000000000000000000000000000000000000000001254 197.0
YYD1_k127_1196274_3 translation release factor activity K03265 GO:0001666,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0016020,GO:0030312,GO:0036293,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944 - 0.0000000000000000000000000000000002235 149.0
YYD1_k127_1196274_4 light absorption K06893 - - 0.000000002118 61.0
YYD1_k127_1197218_0 TonB-dependent receptor K02014 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000455 552.0
YYD1_k127_1197218_1 protein conserved in bacteria K09958 - - 0.0000000000001523 74.0
YYD1_k127_1199180_0 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007431 444.0
YYD1_k127_1199180_1 FAD linked oxidases, C-terminal domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001579 351.0
YYD1_k127_1199180_2 Protein of unknown function DUF116 - - - 0.0000000000004611 78.0
YYD1_k127_1199180_3 Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis K00287 - 1.5.1.3 0.0000000003053 61.0
YYD1_k127_1203606_0 Belongs to the arginase family K01480 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008216,GO:0008295,GO:0009058,GO:0009308,GO:0009309,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0034641,GO:0042401,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576 3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000004491 229.0
YYD1_k127_1203606_1 Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) K08680 - 4.2.99.20 0.000000000000000000000000000000000000000001276 167.0
YYD1_k127_1203606_2 protein conserved in bacteria - - - 0.000000000000001782 87.0
YYD1_k127_1205008_0 Protein of unknown function (DUF512) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000531 485.0
YYD1_k127_1205008_1 Flavin-binding monooxygenase-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002442 441.0
YYD1_k127_1205008_2 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.000000000000000000000000000000000000000000000004647 190.0
YYD1_k127_1205973_0 CarboxypepD_reg-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000311 334.0
YYD1_k127_1205973_1 Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family K00384 - 1.8.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003654 319.0
YYD1_k127_1205973_2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K00658 - 2.3.1.61 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001487 285.0
YYD1_k127_1205973_3 DNA polymerase alpha chain like domain K07053 - 3.1.3.97 0.0000000000000000000000000000000000000000000000000000000001651 216.0
YYD1_k127_1205973_4 COGs COG0491 Zn-dependent hydrolase including glyoxylase - - - 0.000000000000000000000000000000000000000000000000000000002789 208.0
YYD1_k127_1205973_5 - - - - 0.00000000000000000009725 94.0
YYD1_k127_1212333_0 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 436.0
YYD1_k127_1212333_1 protein-glutamate O-methyltransferase activity K00575 - 2.1.1.80 0.000000000000000000000000000000000000000000000000000001077 218.0
YYD1_k127_1212333_2 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009259,GO:0009260,GO:0009987,GO:0016020,GO:0016311,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046031,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990837 - 0.0000000000000000000002243 112.0
YYD1_k127_1212333_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.00000006877 57.0
YYD1_k127_1215473_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.437e-314 976.0
YYD1_k127_1215473_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000001036 229.0
YYD1_k127_1223246_0 Threonyl alanyl tRNA synthetase SAD K01872 - 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001445 388.0
YYD1_k127_1223246_1 Tetratricopeptide repeat K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 390.0
YYD1_k127_1223246_2 Putative cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005394 326.0
YYD1_k127_1223246_3 PFAM Inositol monophosphatase K01092,K05602 - 3.1.3.15,3.1.3.25 0.000000000000000000000000000000000000000000000000000000000000000005168 235.0
YYD1_k127_1223246_4 YHS domain protein - - - 0.00000000000000000000000000001703 125.0
YYD1_k127_1223246_5 Threonyl and Alanyl tRNA synthetase second additional domain K01872 - 6.1.1.7 0.00000000002359 68.0
YYD1_k127_1232937_0 Luciferase-like monooxygenase K17228 - 1.14.14.35 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006392 517.0
YYD1_k127_1232937_1 Glycine cleavage T-protein C-terminal barrel domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004076 414.0
YYD1_k127_1232937_2 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) - - - 0.00000000000003301 72.0
YYD1_k127_1240835_0 proline dipeptidase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181 619.0
YYD1_k127_1240835_1 PFAM Sodium calcium exchanger membrane region K07301 - - 0.000000000000000000000000000000000000000000000000000000001271 211.0
YYD1_k127_1240835_2 DinB family - - - 0.000000006317 64.0
YYD1_k127_1251496_0 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000005269 210.0
YYD1_k127_1251496_1 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000000000000007895 190.0
YYD1_k127_1251496_2 This enzyme acetylates the N-terminal alanine of ribosomal protein S18 K03789 - 2.3.1.128 0.00000000000000000000000002015 115.0
YYD1_k127_1251496_3 Glycoprotease family K14742 - - 0.00000000000002504 81.0
YYD1_k127_1251496_4 LysM domain - - - 0.0000000000003489 81.0
YYD1_k127_1251496_5 Biopolymer transport protein K03560 - - 0.00000007043 56.0
YYD1_k127_1285646_0 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000127 508.0
YYD1_k127_1285646_1 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000001673 138.0
YYD1_k127_1302949_0 Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs K04094 - 2.1.1.74 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 586.0
YYD1_k127_1302949_1 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008731 481.0
YYD1_k127_1302949_2 Type IV pilus assembly protein PilM; K02662 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000805 431.0
YYD1_k127_1302949_3 AMIN domain K02666 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000084 447.0
YYD1_k127_1302949_4 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004058 294.0
YYD1_k127_1302949_5 Fimbrial assembly protein (PilN) - - - 0.000000000000000000000000000000000000007978 154.0
YYD1_k127_1302949_6 Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate K00891 - 2.7.1.71 0.000000000000000000000000000000000001261 144.0
YYD1_k127_1302949_7 - - - - 0.00000000000000001339 89.0
YYD1_k127_1302949_8 assembly protein PilO K02664 - - 0.00005604 53.0
YYD1_k127_130604_0 Winged helix DNA-binding domain - - - 0.00000000000000000000000000000000000000004348 158.0
YYD1_k127_130604_1 Metal-sensitive transcriptional repressor K21600 - - 0.0000000000000000000000000000005247 128.0
YYD1_k127_130604_2 Heavy-metal-associated domain K07213 - - 0.0000000000004801 72.0
YYD1_k127_1318551_0 ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000591 583.0
YYD1_k127_1318551_1 DinB family - - - 0.00000000000000000004171 93.0
YYD1_k127_1318551_2 Ankyrin repeats (3 copies) - - - 0.0007204 44.0
YYD1_k127_1325580_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001085 357.0
YYD1_k127_1325580_1 Belongs to the LOG family K06966 - 3.2.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000001469 265.0
YYD1_k127_1325580_2 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000003184 140.0
YYD1_k127_1325876_0 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.000000000000000000000000000000000000000000005897 167.0
YYD1_k127_1325876_1 Thioredoxin-like - - - 0.0000000000000000000000000000000000001264 149.0
YYD1_k127_1325876_2 Redoxin K03564 - 1.11.1.15 0.00001235 55.0
YYD1_k127_1330385_0 Transcriptional regulator, Fis family - - - 0.0000000000000000000000000000000000000000000000000000000000002375 222.0
YYD1_k127_1330385_1 NlpC/P60 family - - - 0.000000000000000000000000000000005403 140.0
YYD1_k127_1334131_0 ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins K03686 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 447.0
YYD1_k127_1334131_1 Negative regulator of class I heat shock genes (grpE- dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons K03705 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 356.0
YYD1_k127_1334131_2 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001813 327.0
YYD1_k127_1334131_3 Met-10+ like-protein K02687 - - 0.00000000000000000000000000000000000000000000002192 184.0
YYD1_k127_1334131_4 Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit K09761 - 2.1.1.193 0.000000000000000000000000000006869 134.0
YYD1_k127_135282_0 Dihydroxyacetone kinase family K07030 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 318.0
YYD1_k127_135282_1 Involved in the tonB-independent uptake of proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000005429 244.0
YYD1_k127_135282_2 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000004601 138.0
YYD1_k127_135821_0 FMN binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004872 374.0
YYD1_k127_135821_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K18331 - 1.12.1.3 0.000000000000000000000000000000000000000000000000000000000000000000002848 242.0
YYD1_k127_135821_2 Iron hydrogenase small subunit K00123,K00336,K18332 - 1.12.1.3,1.17.1.9,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000004248 249.0
YYD1_k127_1369301_0 arylsulfatase A - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001468 299.0
YYD1_k127_1369301_1 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000001626 79.0
YYD1_k127_1405235_0 Glucose inhibited division protein A K21401 - 1.3.99.38 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007247 322.0
YYD1_k127_1405235_1 Metallopeptidase family M24 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001996 255.0
YYD1_k127_1405235_2 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000001646 175.0
YYD1_k127_1405235_3 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000206 171.0
YYD1_k127_1405235_4 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000000009401 151.0
YYD1_k127_1405235_5 Integral membrane protein DUF92 - - - 0.000000000000000000000000000000000008598 147.0
YYD1_k127_1405235_6 - - - - 0.000000000000000000000000000002431 129.0
YYD1_k127_141692_0 HD domain K07023 - - 0.00000000000000000000000000000000000000000000000000000000000000000002696 241.0
YYD1_k127_141692_1 NUDIX hydrolase K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000003782 214.0
YYD1_k127_141692_2 Integral membrane protein CcmA involved in cell shape determination - - - 0.0000000000000000000000000000000000000000000000006324 180.0
YYD1_k127_141692_3 - - - - 0.0000000000000000000000000000000000000003291 154.0
YYD1_k127_141692_4 - - - - 0.000000000000000000000000000000000000003166 153.0
YYD1_k127_141692_5 Protein of unknown function (DUF1697) - - - 0.0000000000000000000000003117 107.0
YYD1_k127_141692_6 Protein of unknown function (DUF4019) - - - 0.000004248 56.0
YYD1_k127_1431220_0 Belongs to the UDP-glucose GDP-mannose dehydrogenase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000113 476.0
YYD1_k127_1431220_1 Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose K01790 GO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0008653,GO:0008830,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509 5.1.3.13 0.0000000000000000000000000000000000000000000000000000000000000001565 225.0
YYD1_k127_1431220_2 Homoserine dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000607 207.0
YYD1_k127_1431220_3 epimerase dehydratase K01710,K01784 - 4.2.1.46,5.1.3.2 0.00000000001487 64.0
YYD1_k127_1447432_0 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000000000000000005594 207.0
YYD1_k127_1447432_1 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 GO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.4.9 0.00000000000000000000000000000000000000004635 164.0
YYD1_k127_1447432_2 Control of competence regulator ComK, YlbF/YmcA - - - 0.000000000000000000814 91.0
YYD1_k127_1461604_0 Arginase family K01476 - 3.5.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002516 404.0
YYD1_k127_1461604_1 dna ligase K10747 GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016874,GO:0016886,GO:0022616,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360,GO:1901576 6.5.1.1,6.5.1.6,6.5.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 345.0
YYD1_k127_1461604_2 23S rRNA-intervening sequence protein - - - 0.0001291 46.0
YYD1_k127_1461799_0 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657,K13503 GO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016833,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005429 407.0
YYD1_k127_1461799_1 Anthranilate synthase K01658 GO:0000162,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494 4.1.3.27 0.0000000000000000000000000000000000000000000000000000003081 202.0
YYD1_k127_1461799_2 Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA) K00766 GO:0000162,GO:0003674,GO:0003824,GO:0004048,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.18 0.000000000000000000000000000000000000000000000000000001951 197.0
YYD1_k127_1482232_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01006 - 2.7.9.1 0.0 1040.0
YYD1_k127_1482232_1 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 4.745e-198 628.0
YYD1_k127_1482232_10 CDP-alcohol phosphatidyltransferase K17103 - 2.7.8.8 0.0000000000000000000000000000000000000000000000000000000000000001462 232.0
YYD1_k127_1482232_11 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer) K01613 - 4.1.1.65 0.00000000000000000000000000000000000000000000000000000000000004758 223.0
YYD1_k127_1482232_12 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 - 5.4.99.18 0.0000000000000000000000000000000000000000000000000000000002343 212.0
YYD1_k127_1482232_13 Protein of unknown function (DUF2911) - - - 0.000000000000000000000000000001388 127.0
YYD1_k127_1482232_14 HEAT repeats - - - 0.00000000000000000000001737 108.0
YYD1_k127_1482232_15 Transcription factor zinc-finger K09981 - - 0.0000000000000000173 87.0
YYD1_k127_1482232_16 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000003318 87.0
YYD1_k127_1482232_2 Adenylosuccinate lyase C-terminus K01756 - 4.3.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004876 554.0
YYD1_k127_1482232_3 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003341 496.0
YYD1_k127_1482232_4 Trypsin K04771 - 3.4.21.107 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 406.0
YYD1_k127_1482232_5 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 GO:0003674,GO:0003824,GO:0004639,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001627 407.0
YYD1_k127_1482232_6 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.00000000000000000000000000000000000000000000000000000000000000000000000000001085 266.0
YYD1_k127_1482232_7 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000004514 260.0
YYD1_k127_1482232_8 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000001358 260.0
YYD1_k127_1482232_9 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 - 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000004925 257.0
YYD1_k127_1500246_0 PFAM Cache K08738 - - 0.00000000000000000000000000000000000000000000000000000000000000217 231.0
YYD1_k127_1500246_1 lactoylglutathione lyase activity - - - 0.00000000000000000000000000000000000004858 148.0
YYD1_k127_1500246_2 Penicillin amidase K01434 - 3.5.1.11 0.00000000000000000000000000000000001273 140.0
YYD1_k127_1500544_0 Glycosyl hydrolases family 15 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 493.0
YYD1_k127_1500544_1 Removes the phosphate from trehalose 6-phosphate to produce free trehalose K01087,K16055 GO:0003674,GO:0003824,GO:0004805,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0033554,GO:0034637,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0050896,GO:0051716,GO:0070413,GO:0071704,GO:1901576 2.4.1.15,3.1.3.12 0.00000000000000000000000000000000000000000000000000000000000001019 228.0
YYD1_k127_150556_0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 - 2.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 576.0
YYD1_k127_150556_1 Zinc dependent phospholipase C - - - 0.00000000003045 69.0
YYD1_k127_1519915_0 CarboxypepD_reg-like domain - - - 9.134e-253 811.0
YYD1_k127_1521828_0 Zn_pept - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000709 447.0
YYD1_k127_1521828_1 WD40-like Beta Propeller Repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001826 434.0
YYD1_k127_1521828_2 Signal peptidase, peptidase S26 K03100 - 3.4.21.89 0.000000000000000000000000000000000000000000000000000000000000000005342 235.0
YYD1_k127_1521828_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K03585 - - 0.0000000000000000000000000000000000000000000000000000000000000164 231.0
YYD1_k127_1521828_4 of the major facilitator superfamily K08151 - - 0.00000000000000000000000000000000000000000000000000000000000004209 229.0
YYD1_k127_1521828_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K00982,K03564 - 1.11.1.15,2.7.7.42,2.7.7.89 0.00000000000000000000000000000000000000000000000000000000043 206.0
YYD1_k127_1521828_6 Ethanolamine utilization protein EutJ K01999 - - 0.0000000000000000000000000000000000004135 154.0
YYD1_k127_1521828_7 Cold shock protein K03704 - - 0.000000000000000000000000000003805 119.0
YYD1_k127_1521828_8 Chemotaxis K03406 - - 0.00000003121 66.0
YYD1_k127_1521828_9 Outer membrane efflux protein K12340 - - 0.0001843 46.0
YYD1_k127_1537289_0 Participates in both transcription termination and antitermination K02600 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009528 612.0
YYD1_k127_1537289_1 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005221 258.0
YYD1_k127_1537289_2 Required for maturation of 30S ribosomal subunits K09748 - - 0.000000000000000216 86.0
YYD1_k127_1537289_3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family - - - 0.000000000002391 71.0
YYD1_k127_1537974_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 316.0
YYD1_k127_1537974_1 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 311.0
YYD1_k127_1561037_0 (ABC) transporter K06147,K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001306 494.0
YYD1_k127_1561037_1 Domain of unknown function (DUF1854) - - - 0.000000001215 66.0
YYD1_k127_1561037_2 deoxyhypusine monooxygenase activity - - - 0.00000386 51.0
YYD1_k127_1561037_3 PBS lyase HEAT-like repeat - - - 0.0007768 49.0
YYD1_k127_1589710_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001215 306.0
YYD1_k127_1589710_1 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003871 261.0
YYD1_k127_1589710_2 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000244 250.0
YYD1_k127_1589710_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000002137 51.0
YYD1_k127_159972_0 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003713 477.0
YYD1_k127_159972_1 ketosteroid isomerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002083 293.0
YYD1_k127_159972_2 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001947 245.0
YYD1_k127_159972_3 PFAM ATP-binding region K02484,K07678 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000002772 218.0
YYD1_k127_159972_4 - - - - 0.000000000000000000000000009045 120.0
YYD1_k127_1600631_0 heme-copper terminal oxidase activity K02274 - 1.9.3.1 1.013e-196 630.0
YYD1_k127_1600631_1 Methyl-viologen-reducing hydrogenase, delta subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000009852 264.0
YYD1_k127_1600631_2 cytochrome c oxidase (Subunit II) - - - 0.00000000000000000000000000000000000000000000000000000009674 200.0
YYD1_k127_1600631_3 - - - - 0.00000000000000001815 91.0
YYD1_k127_1600631_4 - - - - 0.000000005758 66.0
YYD1_k127_1600631_5 - - - - 0.00006513 47.0
YYD1_k127_1606092_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000001322 153.0
YYD1_k127_1606092_1 efflux transmembrane transporter activity - - - 0.00000000006121 64.0
YYD1_k127_1609924_0 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 1.209e-245 778.0
YYD1_k127_1609924_1 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.000000000000000000000000000000000000000000000005112 177.0
YYD1_k127_1615665_0 Belongs to the aldehyde dehydrogenase family K00128 - 1.2.1.3 0.0 1109.0
YYD1_k127_1615665_1 deoxyribose-phosphate aldolase activity K01619 - 4.1.2.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 497.0
YYD1_k127_1615665_2 Rhomboid family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000447 299.0
YYD1_k127_1615665_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006805 279.0
YYD1_k127_1640233_0 Peptidase family M28 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001874 565.0
YYD1_k127_1640233_1 Peptidase family M28 - - - 0.00000000000000000000000000000002539 136.0
YYD1_k127_1640233_2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.000000000000000000002424 109.0
YYD1_k127_1643428_0 Sodium:dicarboxylate symporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008318 319.0
YYD1_k127_1643428_1 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000156 303.0
YYD1_k127_1643428_2 Osmosensitive K+ channel His kinase sensor domain K07646 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003821 288.0
YYD1_k127_1643428_3 Short-chain dehydrogenase reductase sdr - - - 0.000000000000000000000000000000000000000000000000000000003501 209.0
YYD1_k127_1687608_0 Acetyl xylan esterase (AXE1) - - - 1.903e-228 717.0
YYD1_k127_1687608_1 Cupin domain - - - 0.00000000000000000000000000000000000000000000000007367 179.0
YYD1_k127_1687608_2 Beta-lactamase - - - 0.0000000000000000000000000000000000000000001033 164.0
YYD1_k127_1705695_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 8.435e-199 628.0
YYD1_k127_1705695_1 Thioredoxin-like [2Fe-2S] ferredoxin K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000005036 188.0
YYD1_k127_1720964_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 436.0
YYD1_k127_1720964_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008222 387.0
YYD1_k127_1720964_2 Multicopper oxidase - - - 0.0000000000000000000000000000000000000000000000000000000000001097 219.0
YYD1_k127_1720964_3 H( )-stimulated, divalent metal cation uptake system - - - 0.0000000006833 62.0
YYD1_k127_1750241_0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K01955 - 6.3.5.5 0.0 1242.0
YYD1_k127_1750241_1 cell wall formation K00075 - 1.3.1.98 0.0000000000000000000000000000000000000000000000000000000005119 221.0
YYD1_k127_1766667_0 Signal transduction histidine kinase, LytS K02478 - 2.7.13.3 0.000000000000000000000000000000000000000000001396 179.0
YYD1_k127_1766667_1 LytTr DNA-binding domain - - - 0.0000000000000000000000000000001804 131.0
YYD1_k127_1780704_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005685 503.0
YYD1_k127_1780704_1 efflux transmembrane transporter activity K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007416 453.0
YYD1_k127_1780704_2 ABC transporter K02003 - - 0.00000000002032 64.0
YYD1_k127_1782541_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 - 2.7.1.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001908 603.0
YYD1_k127_1782541_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005651 381.0
YYD1_k127_1782541_2 Belongs to the enoyl-CoA hydratase isomerase family K01715 - 4.2.1.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000001979 270.0
YYD1_k127_1782541_3 it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP K03629 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001582 263.0
YYD1_k127_1782541_4 Methionine biosynthesis protein MetW - - - 0.00000000000000000000000000000000000001676 154.0
YYD1_k127_1782541_5 ferredoxin-NADP+ reductase activity - - - 0.000000000000000000000000000206 127.0
YYD1_k127_1782541_6 Protein of unknown function (DUF721) - - - 0.0000008084 59.0
YYD1_k127_1787457_0 Responsible for synthesis of pseudouridine from uracil K06180 - 5.4.99.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003343 288.0
YYD1_k127_1787457_1 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000002926 259.0
YYD1_k127_1787457_2 cheY-homologous receiver domain K03413 - - 0.0000000000000000000000000000000000000000000000000000000001405 205.0
YYD1_k127_1787457_3 Prokaryotic dksA/traR C4-type zinc finger - - - 0.00000000000000000000000000000000000000000000000000000003886 199.0
YYD1_k127_1787457_4 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000000004941 159.0
YYD1_k127_1787457_5 Histidine Phosphotransfer domain K03407 - 2.7.13.3 0.0000000000000000000008788 103.0
YYD1_k127_1787457_6 chemotaxis K02659,K03408 - - 0.00000000001785 71.0
YYD1_k127_1800037_0 xanthine dehydrogenase activity - - - 2.495e-222 701.0
YYD1_k127_1800037_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008025 611.0
YYD1_k127_1800037_2 WD40-like Beta Propeller Repeat - - - 0.00001378 50.0
YYD1_k127_183041_0 Methylenetetrahydrofolate reductase K00297,K00547 - 1.5.1.20,2.1.1.10 7.857e-243 765.0
YYD1_k127_183041_1 Acyl-CoA dehydrogenase, C-terminal domain K00248,K09478 - 1.3.8.1,1.3.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004646 364.0
YYD1_k127_183041_2 Peptidase S8 and S53, subtilisin, kexin, sedolisin K14645 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 365.0
YYD1_k127_183041_3 B12 binding domain K00548 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006520,GO:0006555,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008213,GO:0008270,GO:0008276,GO:0008652,GO:0008705,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0019538,GO:0019752,GO:0019842,GO:0031419,GO:0032259,GO:0034641,GO:0035999,GO:0036094,GO:0036211,GO:0042084,GO:0042558,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046872,GO:0046906,GO:0046914,GO:0048037,GO:0050667,GO:0051186,GO:0071704,GO:0097159,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 350.0
YYD1_k127_1841278_0 it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids K02313 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001217 553.0
YYD1_k127_1841278_1 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.00000000000000000000000001174 115.0
YYD1_k127_1841278_2 Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria K02338 - 2.7.7.7 0.000000000000000000000002993 107.0
YYD1_k127_1841278_3 Ribosomal protein L34 K02914 - - 0.00000000000000003882 83.0
YYD1_k127_1841278_4 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.0000000000000001839 84.0
YYD1_k127_1841278_5 Required for the insertion and or proper folding and or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins K03217 - - 0.0000000000001163 79.0
YYD1_k127_1857500_0 Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity K03531 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008316 538.0
YYD1_k127_1857500_1 Peptidase family M23 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008733 277.0
YYD1_k127_1868197_0 Domain of unknown function (DUF3471) K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 467.0
YYD1_k127_1868197_1 Aldehyde dehydrogenase family K00140,K22187 - 1.2.1.18,1.2.1.27 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 329.0
YYD1_k127_1868197_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000703 170.0
YYD1_k127_1870165_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 1.203e-217 687.0
YYD1_k127_1870165_1 Insulinase (Peptidase family M16) K07263 - - 4.758e-195 638.0
YYD1_k127_1870165_10 - - - - 0.000000000000000003256 91.0
YYD1_k127_1870165_11 DUF167 K09131 - - 0.00000000000000001808 95.0
YYD1_k127_1870165_13 Belongs to the CDP-alcohol phosphatidyltransferase class-I family K00995,K08744 - 2.7.8.41,2.7.8.5 0.0000000001776 68.0
YYD1_k127_1870165_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002055 409.0
YYD1_k127_1870165_3 Transport of potassium into the cell K03549 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008749 370.0
YYD1_k127_1870165_4 tungstate binding K15495 - - 0.00000000000000000000000000000000000000000000000000000000000000000007932 242.0
YYD1_k127_1870165_5 DSBA-like thioredoxin domain - - - 0.000000000000000000000000000000000000000000000000304 184.0
YYD1_k127_1870165_6 redox protein regulator of disulfide bond formation K07397 - - 0.0000000000000000000000001553 110.0
YYD1_k127_1870165_7 YGGT family K02221 - - 0.000000000000000000000007426 111.0
YYD1_k127_1870165_8 PFAM CutA1 divalent ion tolerance protein K03926 - - 0.00000000000000000000009209 103.0
YYD1_k127_1870165_9 Vitamin K epoxide reductase family - - - 0.00000000000000000001245 97.0
YYD1_k127_1879722_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 9.142e-315 978.0
YYD1_k127_1879722_1 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000001338 193.0
YYD1_k127_1879722_2 peptidyl-tyrosine sulfation - - - 0.0000000000008935 82.0
YYD1_k127_1889896_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001042 440.0
YYD1_k127_1889896_1 Stage II sporulation protein K06381 - - 0.0000000000000000000000000000000000000000000000000000000000008363 228.0
YYD1_k127_1889896_2 Aldehyde dehydrogenase family K22187 - - 0.000000000000000000000000000000000000000004697 154.0
YYD1_k127_1928757_0 phosphatidate phosphatase activity K09474,K19302 - 3.1.3.2,3.6.1.27 1.072e-203 646.0
YYD1_k127_1928757_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002289 248.0
YYD1_k127_1928757_2 MOSC domain - - - 0.0000000000000000000000000000000000000000000000000000000001121 212.0
YYD1_k127_1928757_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000000003243 217.0
YYD1_k127_1928757_4 response regulator K02477 - - 0.0000000000000000000000000000000000000000000000000004823 201.0
YYD1_k127_1928757_5 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000000000001447 154.0
YYD1_k127_1928757_6 Protein of unknown function (DUF1059) - - - 0.0003341 44.0
YYD1_k127_1942842_0 PFAM Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002326 476.0
YYD1_k127_1942842_1 transferase activity, transferring glycosyl groups K13693 - 2.4.1.266 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 469.0
YYD1_k127_1942842_2 haloacid dehalogenase-like hydrolase K07026 - 3.1.3.70 0.00000000000000000000000000000000000000000000000000000001695 212.0
YYD1_k127_1942842_3 transmembrane transport - - - 0.00000000000000000000000000000265 130.0
YYD1_k127_1942842_4 Glycosyl transferase family 2 K21349 - 2.4.1.268 0.00000000000000000000000000000832 122.0
YYD1_k127_1965245_0 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000294 551.0
YYD1_k127_1965245_1 Putative neutral zinc metallopeptidase K07054 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005155 328.0
YYD1_k127_1965245_2 L-lysine 6-monooxygenase (NADPH-requiring) K00384 - 1.8.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000844 306.0
YYD1_k127_1965245_3 Aldo keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001628 297.0
YYD1_k127_1965245_4 threonine K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000002316 220.0
YYD1_k127_1965245_5 Bacterial regulatory proteins, tetR family K16137 - - 0.0000000000000000000000000000000000000000000000000000000000006325 216.0
YYD1_k127_1965245_6 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000000000000000000007136 187.0
YYD1_k127_1965245_7 DSBA-like thioredoxin domain - - - 0.0000000000000000001949 100.0
YYD1_k127_1971894_0 ATP-dependent helicase K03579 - 3.6.4.13 9.976e-276 871.0
YYD1_k127_1971894_1 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0000000000000000000000000000000000000000000000000007222 201.0
YYD1_k127_1971894_2 inositol 2-dehydrogenase activity - - - 0.000000000000000000000000000000000000000000002577 173.0
YYD1_k127_1971894_3 inositol 2-dehydrogenase activity - - - 0.000000000000000000000006821 107.0
YYD1_k127_1988375_0 DEAD DEAH box helicase K03724 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004573 491.0
YYD1_k127_1988375_1 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000001629 153.0
YYD1_k127_1988901_0 Carbohydrate family 9 binding domain-like - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003877 306.0
YYD1_k127_1988901_1 protein (some members contain a von Willebrand factor type A (vWA) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000001364 239.0
YYD1_k127_1988901_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000002716 110.0
YYD1_k127_1992215_0 DNA polymerase alpha chain like domain K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008615 476.0
YYD1_k127_1992215_1 Serine aminopeptidase, S33 K01259 - 3.4.11.5 0.000000000000000000000000000000000000005109 149.0
YYD1_k127_1992215_2 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.000002332 52.0
YYD1_k127_1992215_3 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.000005367 48.0
YYD1_k127_2036029_0 COG1228 Imidazolonepropionase and related amidohydrolases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002076 466.0
YYD1_k127_2036029_1 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004075 308.0
YYD1_k127_2052617_0 Atp-dependent helicase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002394 515.0
YYD1_k127_2052617_1 peptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000604 286.0
YYD1_k127_2052617_2 Transglycosylase associated protein - - - 0.000000000000000000000000003112 113.0
YYD1_k127_2053237_0 peptidase - - - 1.811e-221 706.0
YYD1_k127_2053237_1 Pantothenic acid kinase K00867 GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003238 409.0
YYD1_k127_2053237_2 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.0000000000000000000000000000000000000000000000001173 186.0
YYD1_k127_2053237_3 Amidohydrolase family K06015 - 3.5.1.81 0.000000000000000002002 89.0
YYD1_k127_2076375_0 ADP-ribosylation factor family K06883 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 379.0
YYD1_k127_2076375_1 Competence-damaged protein K03742 - 3.5.1.42 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006691 383.0
YYD1_k127_2076375_2 Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN NodQ subfamily K00955 - 2.7.1.25,2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 323.0
YYD1_k127_2076375_3 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.000000000000000000000000000000000000000000000000000000000000000000002635 239.0
YYD1_k127_2076375_4 Roadblock/LC7 domain - - - 0.000000000000000000000000000000000000000000000000000001871 199.0
YYD1_k127_2076375_5 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000008663 179.0
YYD1_k127_2076375_6 Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection K09747 - - 0.000000000000001707 79.0
YYD1_k127_2076375_7 - - - - 0.0000000000002869 76.0
YYD1_k127_2079481_0 Bacterial sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001569 249.0
YYD1_k127_2079481_1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - - - 0.0000000000000000000004225 108.0
YYD1_k127_2079481_2 polysaccharide export - - - 0.0000000000000000000145 103.0
YYD1_k127_2082039_0 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit K01903 - 6.2.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006942 514.0
YYD1_k127_2082039_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K15778 - 5.4.2.2,5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006214 490.0
YYD1_k127_2082039_10 Uncharacterised protein family (UPF0182) K09118 - - 0.0000000002024 74.0
YYD1_k127_2082039_2 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit K01902 - 6.2.1.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 441.0
YYD1_k127_2082039_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00343 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001218 334.0
YYD1_k127_2082039_4 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002366 314.0
YYD1_k127_2082039_5 NDK K00940 - 2.7.4.6 0.000000000000000000000000000000000000000000000003633 176.0
YYD1_k127_2082039_6 NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00342 - 1.6.5.3 0.0000000000000000000000000000000000000003846 153.0
YYD1_k127_2082039_7 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000000000000000000000001688 144.0
YYD1_k127_2082039_8 Uncharacterized ACR, COG1399 K07040 - - 0.000000000000000000000000000021 123.0
YYD1_k127_2082039_9 Ribosomal L32p protein family K02911 - - 0.0000000000000006051 79.0
YYD1_k127_2085850_0 Thiolase, C-terminal domain K00626,K07508 - 2.3.1.16,2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007871 355.0
YYD1_k127_2085850_1 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 - 3.1.26.4 0.0000000000000000000000000000000000000000000000000005741 190.0
YYD1_k127_2085850_2 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000001524 116.0
YYD1_k127_2085850_3 - - - - 0.00000000000003071 81.0
YYD1_k127_2102049_0 N-terminal TM domain of oligopeptide transport permease C K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001924 329.0
YYD1_k127_2102049_1 4Fe-4S single cluster domain K07001 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006699 293.0
YYD1_k127_2102049_2 Glycosyl transferases group 1 K13668 - 2.4.1.346 0.000000000000000000000000000000000000000000000000001421 198.0
YYD1_k127_2102049_3 23S rRNA-intervening sequence protein - - - 0.00000000000003386 77.0
YYD1_k127_2121506_0 Vacuole effluxer Atg22 like K06902 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004039 399.0
YYD1_k127_2121506_1 PFAM Integral membrane protein TerC K05794 - - 0.000000000000000000000000000000000000000000000000002556 185.0
YYD1_k127_2151062_0 GMC oxidoreductase - - - 7.931e-231 727.0
YYD1_k127_2151062_1 Xylose isomerase-like TIM barrel - - - 0.000000000000000000000000000000000000000000003555 170.0
YYD1_k127_2151062_2 Gluconate 2-dehydrogenase subunit 3 - - - 0.0009594 44.0
YYD1_k127_2168800_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 - - 1.727e-216 700.0
YYD1_k127_2168800_1 Domain in cystathionine beta-synthase and other proteins. K01697 - 4.2.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007043 487.0
YYD1_k127_2168800_3 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000000000003202 91.0
YYD1_k127_2168800_4 Domain of unknown function (DUF4198) - - - 0.00000000000432 70.0
YYD1_k127_2179890_0 DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA K01972 GO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360 6.5.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 602.0
YYD1_k127_2179890_1 sensor histidine kinase response - - - 0.000000000000000003932 92.0
YYD1_k127_2185423_0 Sodium:solute symporter family - - - 2.847e-250 783.0
YYD1_k127_2185423_1 NADH dehydrogenase, FAD-containing subunit K03885 - 1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001616 462.0
YYD1_k127_2185423_2 Putative metallopeptidase - - - 0.00000004778 62.0
YYD1_k127_2185423_3 Alpha-L-fucosidase K01206 - 3.2.1.51 0.000001064 52.0
YYD1_k127_2198722_0 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing K03551 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001323 468.0
YYD1_k127_2198722_1 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008471 337.0
YYD1_k127_2198722_2 Transcriptional regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 303.0
YYD1_k127_2198722_3 PFAM glycosyl transferase family 9 K02843 - - 0.000000000000000000000000000000000000000000000000000195 198.0
YYD1_k127_2198722_4 Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group K01159 - 3.1.22.4 0.0000000000000000000000000000000000000000000000000002014 191.0
YYD1_k127_2198722_5 The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB K03550 - 3.6.4.12 0.00000000000000000000000000000000000000000000009932 180.0
YYD1_k127_2209496_0 4 iron, 4 sulfur cluster binding K03737 - 1.2.7.1 2.022e-223 700.0
YYD1_k127_2209496_1 Fe-S cluster K03616 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000033 301.0
YYD1_k127_222858_0 nitrous-oxide reductase activity K00376,K02275 GO:0000041,GO:0005575,GO:0005623,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0015677,GO:0030001,GO:0042597,GO:0044464,GO:0051179,GO:0051234 1.7.2.4,1.9.3.1 6.145e-308 955.0
YYD1_k127_222858_1 TonB-dependent receptor K02014 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002159 601.0
YYD1_k127_222858_2 exo-alpha-(2->6)-sialidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002314 287.0
YYD1_k127_222858_3 Cytochrome c - - - 0.0000000000000000000000000000000002267 136.0
YYD1_k127_222858_4 2 iron, 2 sulfur cluster binding K13643 - - 0.000000000000000000000004073 108.0
YYD1_k127_222858_5 lipoprotein involved in nitrous oxide reduction K19342 - - 0.000000000000000000006396 102.0
YYD1_k127_2317532_0 Catalyzes the biosynthesis of agmatine from arginine K01585 - 4.1.1.19 1.34e-272 852.0
YYD1_k127_2317532_1 Acyl-CoA dehydrogenase, N-terminal domain - - - 4.105e-203 659.0
YYD1_k127_2317532_2 Belongs to the citrate synthase family K01647 - 2.3.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003561 619.0
YYD1_k127_2317532_3 Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII K02346 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008274 346.0
YYD1_k127_2317532_4 PFAM CBS domain containing protein K06402 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002098 325.0
YYD1_k127_2317532_5 Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) K09457 - 1.7.1.13 0.000000000000000000000000000000000000000001451 159.0
YYD1_k127_2317532_6 PFAM Bacterial regulatory proteins, tetR family K09017,K22295 - - 0.000000000000000000000000000001416 134.0
YYD1_k127_2317532_7 epimerase K07071 - - 0.00000000000000001023 84.0
YYD1_k127_2330073_0 Fumarase C C-terminus K01744 - 4.3.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009702 597.0
YYD1_k127_2330073_1 Involved in molybdopterin and thiamine biosynthesis, family 2 K03148,K21029,K21147 - 2.7.7.73,2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 429.0
YYD1_k127_2330073_2 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002509 341.0
YYD1_k127_2330073_3 Ami_3 K01448 - 3.5.1.28 0.0000000000000000000000000000000000000000000000000000000000000002014 236.0
YYD1_k127_2330073_4 Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) K01591 - 4.1.1.23 0.000000000000000000000000000000000000000000000000008911 188.0
YYD1_k127_2330073_5 Transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000001775 183.0
YYD1_k127_2330073_6 Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene K03664 GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070930,GO:0071704,GO:1901564 - 0.00000000000000000000000000000000000000000000000003945 186.0
YYD1_k127_2330073_7 - - - - 0.000000000000000000000000000000000003912 145.0
YYD1_k127_2330073_8 Cupin domain - - - 0.00000000000006882 76.0
YYD1_k127_2336722_0 TatD related DNase K03424 - - 0.0000000000000000000000000000000000000000000000000000000000000000001674 238.0
YYD1_k127_2336722_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000000000000000000000000000000000000000000000000006089 205.0
YYD1_k127_2336722_2 Belongs to the formate--tetrahydrofolate ligase family K01938 - 6.3.4.3 0.0000001749 55.0
YYD1_k127_2357436_0 Belongs to the D-alanine--D-alanine ligase family K01921 GO:0000270,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006022,GO:0006023,GO:0006024,GO:0006807,GO:0008150,GO:0008152,GO:0008716,GO:0009058,GO:0009059,GO:0009252,GO:0009273,GO:0009314,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016874,GO:0016879,GO:0016881,GO:0030203,GO:0034645,GO:0042546,GO:0043170,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070589,GO:0071554,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005856 394.0
YYD1_k127_2357436_1 Pyridoxal-phosphate dependent enzyme K01697 - 4.2.1.22 0.0000000000004289 72.0
YYD1_k127_2357436_2 Rhomboid family - - - 0.00006241 52.0
YYD1_k127_2361730_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000001911 269.0
YYD1_k127_2361730_1 WHG domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004928 228.0
YYD1_k127_2361730_2 Uncharacterized conserved protein (COG2071) K09166 - - 0.00000000000000000000000000000000000000000007424 172.0
YYD1_k127_2361730_3 - - - - 0.0000000000000000000000000000000001741 138.0
YYD1_k127_2361730_4 Belongs to the UPF0337 (CsbD) family - - - 0.000000000000000000000198 100.0
YYD1_k127_2361730_5 Outer membrane efflux protein - - - 0.000000000000000007646 88.0
YYD1_k127_2361730_6 Domain of unknown function (DUF892) - - - 0.00000000000001405 77.0
YYD1_k127_2361730_7 Protein of unknown function (DUF1328) - - - 0.000003436 55.0
YYD1_k127_2374204_0 cellulose binding - - - 4.116e-236 750.0
YYD1_k127_2374204_1 Peptidase dimerisation domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003697 490.0
YYD1_k127_2374204_2 Clp protease - - - 0.000000000000000000000000000000000000000000000000000000000000000000001395 241.0
YYD1_k127_2374204_3 amidohydrolase - - - 0.0000000000000000000000000001551 121.0
YYD1_k127_2374204_4 PFAM Glyoxalase bleomycin resistance protein dioxygenase - - - 0.0000000000000000000153 102.0
YYD1_k127_2379937_0 With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD K10979 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009479 342.0
YYD1_k127_2379937_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000003308 182.0
YYD1_k127_2379937_2 PFAM diacylglycerol kinase catalytic region - - - 0.00000000000000000000000000000000000000000004333 172.0
YYD1_k127_2379937_3 cutC copper transporter homolog (E. coli) K06201 GO:0000003,GO:0000041,GO:0002119,GO:0002164,GO:0003008,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0007275,GO:0007600,GO:0007610,GO:0008150,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0018991,GO:0019098,GO:0019233,GO:0022414,GO:0022607,GO:0030001,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0035264,GO:0040007,GO:0040025,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046688,GO:0046872,GO:0046914,GO:0048513,GO:0048569,GO:0048589,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050877,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0098771 - 0.000000000000000000000000000000000000005928 153.0
YYD1_k127_2379937_4 Cell wall-active antibiotics response 4TMS YvqF - - - 0.0000000000000004189 86.0
YYD1_k127_2398897_0 4Fe-4S single cluster domain K06871 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 474.0
YYD1_k127_2398897_1 Quinohemoprotein amine dehydrogenase, gamma subunit - - - 0.00000000000000000000000000000000000000000000001565 177.0
YYD1_k127_2398897_2 amine dehydrogenase activity - - - 0.0000000000000000000000000000000000000000000007081 185.0
YYD1_k127_2398897_3 ABC transporter transmembrane region K06147 - - 0.000000000000000000005875 96.0
YYD1_k127_2399598_0 Transketolase, pyrimidine binding domain K00167,K11381,K21417 - 1.2.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002175 482.0
YYD1_k127_2399598_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00161,K11381,K21416 - 1.2.4.1,1.2.4.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022 447.0
YYD1_k127_2399598_2 Myo-inositol-1-phosphate synthase K01858 - 5.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007358 399.0
YYD1_k127_2399598_3 Phosphate transporter family K03306 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004775 388.0
YYD1_k127_2399598_4 Protein of unknown function DUF47 K07220 - - 0.00000000000000000000000000000000000000000000003456 176.0
YYD1_k127_2399598_5 - - - - 0.000000000000000002238 87.0
YYD1_k127_240048_0 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007695 461.0
YYD1_k127_240048_1 ATP dependent DNA ligase C terminal region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000587 280.0
YYD1_k127_2414239_0 lysine biosynthetic process via aminoadipic acid - - - 1.497e-217 699.0
YYD1_k127_2414239_1 Protein of unknown function, DUF488 - - - 0.00000000000000000000000000000000000000000000002144 175.0
YYD1_k127_2426198_0 Cellulose biosynthesis protein BcsQ K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005026 344.0
YYD1_k127_2426198_1 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006708 323.0
YYD1_k127_2426198_2 Belongs to the ParB family K03497 - - 0.0000000000000000000000000000000000000000000000000000000000000007683 235.0
YYD1_k127_2426198_3 NIF3 (NGG1p interacting factor 3) - - - 0.00000000000000000000000000000000000000009963 156.0
YYD1_k127_2436913_0 nitrite reductase [NAD(P)H] activity K00493,K07408,K15762 - 1.14.14.1 1.888e-224 711.0
YYD1_k127_2436913_1 Bacterial protein of unknown function (DUF882) - - - 0.00000000000000000000000000000001306 132.0
YYD1_k127_2436913_2 ArsC family - - - 0.000000000000002767 77.0
YYD1_k127_2436913_3 AP2 domain - - - 0.00000002085 59.0
YYD1_k127_2451977_0 Carbohydrate family 9 binding domain-like - - - 5.806e-194 623.0
YYD1_k127_2451977_1 ABC1 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006027 434.0
YYD1_k127_2454537_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002215 390.0
YYD1_k127_246154_1 Peptidase family M28 - - - 0.0000000000001019 79.0
YYD1_k127_2463993_0 Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) K11784 - 1.21.98.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000474 535.0
YYD1_k127_2463993_1 Elongator protein 3, MiaB family, Radical SAM K18285 - 2.5.1.120 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058 500.0
YYD1_k127_2463993_2 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006992 424.0
YYD1_k127_2463993_3 KR domain K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000481 306.0
YYD1_k127_2463993_4 Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11782 - 4.2.1.151 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001952 288.0
YYD1_k127_2463993_5 Carrier of the growing fatty acid chain in fatty acid biosynthesis K02078 - - 0.0000000000000000000000001391 111.0
YYD1_k127_2463993_6 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000003335 85.0
YYD1_k127_2463993_7 Acyl transferase domain K00645 - 2.3.1.39 0.00000000000000006643 82.0
YYD1_k127_2474413_0 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000002693 250.0
YYD1_k127_2474413_1 PFAM Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000003594 161.0
YYD1_k127_2485499_0 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003114 428.0
YYD1_k127_2485499_1 Methyltransferase small domain K02493 - 2.1.1.297 0.0000000000000000000000000000000000000000000009571 177.0
YYD1_k127_2529656_0 PFAM Cys Met metabolism PLP-dependent enzyme K01739 - 2.5.1.48 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001 344.0
YYD1_k127_2529656_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000008513 220.0
YYD1_k127_2529656_2 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000008681 123.0
YYD1_k127_2542115_0 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 - 4.1.1.37 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002921 404.0
YYD1_k127_2542115_1 Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) K02492 - 1.2.1.70 0.0000000000000000000000000000000000006706 149.0
YYD1_k127_2568569_0 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001722 379.0
YYD1_k127_2568569_1 MafB19-like deaminase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000008781 242.0
YYD1_k127_2568569_2 ATP dependent DNA ligase domain protein K01971 - 6.5.1.1 0.00000000000000000000000000000000000008012 145.0
YYD1_k127_2577402_0 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002637 432.0
YYD1_k127_2577402_1 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000287 316.0
YYD1_k127_2577402_2 LytB protein K03527 - 1.17.7.4 0.00003926 48.0
YYD1_k127_2586904_0 Transcriptional regulator - GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0030312,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006303 487.0
YYD1_k127_2586904_1 Two component, sigma54 specific, transcriptional regulator, Fis family K02667,K07713,K07714,K19641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005108 453.0
YYD1_k127_2586904_10 - - - - 0.00000000000000000000000000003255 126.0
YYD1_k127_2586904_11 Acetyltransferase (GNAT) domain K00619 - 2.3.1.1 0.00000000000000000000000000007382 122.0
YYD1_k127_2586904_12 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.0000000000000000000000000006991 115.0
YYD1_k127_2586904_13 Serine aminopeptidase, S33 K01055,K10216,K18092 - 3.1.1.24,3.7.1.9 0.00002493 53.0
YYD1_k127_2586904_2 PAS domain K02668 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001809 357.0
YYD1_k127_2586904_3 PFAM glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002923 278.0
YYD1_k127_2586904_4 Cytochrome C oxidase, cbb3-type, subunit III K19713 - 1.8.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000734 259.0
YYD1_k127_2586904_5 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine K00797 - 2.5.1.16 0.00000000000000000000000000000000000000000000008919 172.0
YYD1_k127_2586904_6 Cytochrome c mono- and diheme variants - - - 0.00000000000000000000000000000000000000000000009371 174.0
YYD1_k127_2586904_7 S4 RNA-binding domain K04762 - - 0.00000000000000000000000000000000000001257 148.0
YYD1_k127_2586904_8 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000001117 151.0
YYD1_k127_2586904_9 - - - - 0.00000000000000000000000000002112 125.0
YYD1_k127_2655365_0 Sodium/hydrogen exchanger family K03455 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005906 573.0
YYD1_k127_2655365_1 S-adenosyl-l-methionine hydroxide adenosyltransferase K22205 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000003858 273.0
YYD1_k127_2655365_2 endonuclease III K01247 - 3.2.2.21 0.00000000000000000000000000000000000000000000000000000000003126 213.0
YYD1_k127_2655365_3 PFAM Patatin - - - 0.000000000000000000000000000000000000000000000000000006926 200.0
YYD1_k127_2655365_4 Domain present in phytochromes and cGMP-specific phosphodiesterases. K07636 - 2.7.13.3 0.00000000000000000000000893 109.0
YYD1_k127_2655365_5 carboxy-lyase activity. It is involved in the biological process described with cellular amino acid metabolic process K01590,K01593,K22329 GO:0000003,GO:0001505,GO:0003008,GO:0003674,GO:0003824,GO:0004058,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006568,GO:0006570,GO:0006576,GO:0006584,GO:0006585,GO:0006586,GO:0006587,GO:0006725,GO:0006807,GO:0006810,GO:0006836,GO:0006950,GO:0007275,GO:0007444,GO:0007562,GO:0007564,GO:0007568,GO:0007591,GO:0007593,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0007616,GO:0007617,GO:0007618,GO:0007619,GO:0007622,GO:0007623,GO:0008021,GO:0008062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009072,GO:0009266,GO:0009308,GO:0009309,GO:0009404,GO:0009605,GO:0009611,GO:0009628,GO:0009636,GO:0009712,GO:0009713,GO:0009719,GO:0009820,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0012505,GO:0015837,GO:0015842,GO:0016597,GO:0016829,GO:0016830,GO:0016831,GO:0017085,GO:0017144,GO:0018130,GO:0018958,GO:0019098,GO:0019438,GO:0019748,GO:0019752,GO:0019842,GO:0019899,GO:0019904,GO:0019953,GO:0021700,GO:0022404,GO:0022414,GO:0030133,GO:0030170,GO:0030424,GO:0031406,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0033076,GO:0034641,GO:0035220,GO:0035295,GO:0035690,GO:0036094,GO:0036468,GO:0036477,GO:0040007,GO:0040011,GO:0040040,GO:0042133,GO:0042136,GO:0042221,GO:0042303,GO:0042330,GO:0042335,GO:0042401,GO:0042416,GO:0042417,GO:0042423,GO:0042427,GO:0042428,GO:0042430,GO:0042435,GO:0042493,GO:0042995,GO:0043005,GO:0043025,GO:0043052,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043279,GO:0043436,GO:0043473,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044297,GO:0044424,GO:0044444,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0046189,GO:0046219,GO:0046483,GO:0046684,GO:0048037,GO:0048066,GO:0048067,GO:0048070,GO:0048079,GO:0048082,GO:0048085,GO:0048511,GO:0048512,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0052314,GO:0060429,GO:0065007,GO:0065008,GO:0070279,GO:0070382,GO:0070848,GO:0070887,GO:0071310,GO:0071312,GO:0071363,GO:0071417,GO:0071495,GO:0071684,GO:0071702,GO:0071704,GO:0071705,GO:0097159,GO:0097164,GO:0097458,GO:0097708,GO:0098700,GO:0098793,GO:0099503,GO:0099504,GO:0120025,GO:1901160,GO:1901162,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901615,GO:1901617,GO:1901698,GO:1901699,GO:2000026 4.1.1.105,4.1.1.22,4.1.1.25,4.1.1.28 0.00000000006455 65.0
YYD1_k127_2668656_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 488.0
YYD1_k127_2668656_1 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003943 290.0
YYD1_k127_2668656_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.000000000000000000000000000000000000000000000000000000000000000000000009436 258.0
YYD1_k127_266917_0 Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)) K06920 - 6.3.4.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005612 339.0
YYD1_k127_266917_1 Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds K10026 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0008144,GO:0016829,GO:0016840,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0046872,GO:0046983,GO:0048037,GO:0050662,GO:0051536,GO:0051539,GO:0051540,GO:1901681,GO:1904047 4.3.99.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 323.0
YYD1_k127_266917_2 Domain of unknown function (DUF1731) K07071 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004861 300.0
YYD1_k127_266917_3 Protein kinase domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000001808 276.0
YYD1_k127_266917_4 Diguanylate cyclase with PAS PAC and GAF sensors - - - 0.000000000000000000000000000000000000009071 161.0
YYD1_k127_266917_5 Cold shock K03704 - - 0.000000000000000000000000000002596 121.0
YYD1_k127_2677116_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 3.353e-205 655.0
YYD1_k127_2677116_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000157 524.0
YYD1_k127_2677116_10 - - - - 0.0000000000000000000000000001519 116.0
YYD1_k127_2677116_11 Amino acid permease K03294,K03758 - - 0.0000000000000000000001325 107.0
YYD1_k127_2677116_2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K00263 - 1.4.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000383 486.0
YYD1_k127_2677116_3 Belongs to the thiolase family K00626 - 2.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009977 463.0
YYD1_k127_2677116_4 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317 407.0
YYD1_k127_2677116_5 Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration K17758,K17759 - 4.2.1.136,5.1.99.6 0.00000000000000000000000000000000000000000000000000000000000000000000003693 260.0
YYD1_k127_2677116_6 Ribose/Galactose Isomerase K01808 - 5.3.1.6 0.000000000000000000000000000000000000000000000000000000000001347 213.0
YYD1_k127_2677116_7 Amino acid permease - - - 0.00000000000000000000000000000000000000000001294 179.0
YYD1_k127_2677116_8 - - - - 0.00000000000000000000000000000004364 133.0
YYD1_k127_2677116_9 CAAX protease self-immunity K07052 - - 0.000000000000000000000000000008327 130.0
YYD1_k127_2680658_0 this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis K03667 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000746 577.0
YYD1_k127_2680658_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001535 452.0
YYD1_k127_2680658_2 Sodium/hydrogen exchanger family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003425 370.0
YYD1_k127_2680658_3 Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery K01419 - 3.4.25.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000648 261.0
YYD1_k127_2680658_4 The glycine cleavage system catalyzes the degradation of glycine K00605 - 2.1.2.10 0.0000000000000000000398 90.0
YYD1_k127_2683545_0 Carboxyl transferase domain K01966 - 2.1.3.15,6.4.1.3 5.572e-254 792.0
YYD1_k127_2683545_1 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006102 484.0
YYD1_k127_2683545_2 tRNA (Uracil-5-)-methyltransferase K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000002425 245.0
YYD1_k127_2683545_3 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 - - 0.0000000000000000000000000000000000000000000000000000000009266 205.0
YYD1_k127_2683545_4 pyrroloquinoline quinone binding - - - 0.000000000000000000000000000000000000000000000000000004117 195.0
YYD1_k127_2683545_5 Ribosomal protein S9/S16 K02996 - - 0.000000000000000000000000000000000000000000000000003281 187.0
YYD1_k127_2683545_6 Biotin-requiring enzyme - - - 0.000000000000000000000000000005035 130.0
YYD1_k127_2683545_8 Haloacid dehalogenase-like hydrolase K19270 - 3.1.3.23 0.0006531 44.0
YYD1_k127_2718997_0 Transferrin receptor-like dimerisation domain K01301 - 3.4.17.21 2.118e-300 937.0
YYD1_k127_2718997_1 Aminotransferase class-V - - - 6.902e-196 619.0
YYD1_k127_2718997_2 von Willebrand factor (vWF) type A domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 597.0
YYD1_k127_2718997_3 Peptidase family M48 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002407 445.0
YYD1_k127_2718997_4 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002965 259.0
YYD1_k127_2718997_5 PFAM beta-lactamase domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001598 248.0
YYD1_k127_2718997_6 - - - - 0.00000000000000000000000000000003466 136.0
YYD1_k127_2718997_7 PFAM S23 ribosomal protein - - - 0.0000000001664 63.0
YYD1_k127_2718997_8 PFAM S23 ribosomal protein - - - 0.0003276 44.0
YYD1_k127_2763357_0 lysine biosynthetic process via aminoadipic acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004779 589.0
YYD1_k127_2763357_1 amino acid K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003123 443.0
YYD1_k127_2763357_2 amidohydrolase K03392 - 4.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 306.0
YYD1_k127_2763357_3 Serine/threonine phosphatases, family 2C, catalytic domain K01090,K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000005214 291.0
YYD1_k127_2765979_0 FAD dependent oxidoreductase K03153 - 1.4.3.19 0.0000000000000000000000000000000000000000000000000000000007339 215.0
YYD1_k127_2765979_1 Glycosyl transferase family 2 K08301 - - 0.000000000000000000000000000000000000000000000000000000649 201.0
YYD1_k127_2765979_2 DNA-templated transcription, initiation K03088 - - 0.000000000000000000000000000000000000000000000000000001744 196.0
YYD1_k127_2765979_3 Protein of unknown function (DUF3108) - - - 0.0000000000000000000000000000000000000000000000006929 185.0
YYD1_k127_2765979_4 PFAM Glycosyl transferase, group 1 - - - 0.0000000000000000000000000000000000000002484 163.0
YYD1_k127_2765979_5 - - - - 0.00000000000000001021 96.0
YYD1_k127_2765979_6 - - - - 0.00000000000000002249 91.0
YYD1_k127_2765979_7 Glycogen recognition site of AMP-activated protein kinase - - - 0.000000000000001148 87.0
YYD1_k127_2765979_8 Domain of unknown function (DUF4397) - - - 0.000008394 56.0
YYD1_k127_2775077_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307 - - 7.975e-217 681.0
YYD1_k127_2775077_1 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000001365 165.0
YYD1_k127_2785020_0 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001567 346.0
YYD1_k127_2785020_1 response regulator - - - 0.000000000000000000000000000000000000000009916 167.0
YYD1_k127_2785020_2 Diacylglycerol kinase catalytic domain (presumed) - - - 0.00000000000000000000000000000000000823 150.0
YYD1_k127_2787300_0 PFAM Glu Leu Phe Val dehydrogenase K15371 - 1.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007486 563.0
YYD1_k127_2787300_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000352 308.0
YYD1_k127_2787300_2 Histidyl-tRNA synthetase K01892 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001841 278.0
YYD1_k127_2787300_3 - - - - 0.0000000000000000000000000001235 121.0
YYD1_k127_2788879_0 YCII-related domain - - - 0.000000000000000000000000000000000000000000000268 173.0
YYD1_k127_2788879_1 YCII-related domain - - - 0.000000000000000000002117 100.0
YYD1_k127_2788879_2 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000001272 94.0
YYD1_k127_2838263_0 Chain length determinant protein K16554 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003937 585.0
YYD1_k127_2838263_1 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000002484 191.0
YYD1_k127_2838263_2 Bacterial regulatory protein, Fis family - - - 0.00000000000000000000000001763 109.0
YYD1_k127_2838263_3 Kelch-like protein K10442 GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0015630,GO:0019538,GO:0031461,GO:0031463,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1902494,GO:1990234 - 0.000001477 56.0
YYD1_k127_288932_0 MoeA N-terminal region (domain I and II) K03750 - 2.10.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007943 376.0
YYD1_k127_288932_1 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.00000000000000000000000000000000000000000000000001297 186.0
YYD1_k127_288932_2 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.0000000000000000000000000000001527 132.0
YYD1_k127_288932_3 Molybdopterin guanine dinucleotide synthesis protein B K03753 - - 0.000000000000000000000005773 109.0
YYD1_k127_288932_4 protein domain associated with - - - 0.0000000000000000004981 90.0
YYD1_k127_2891005_0 Glycosyltransferase 36 associated - - - 2.244e-212 673.0
YYD1_k127_2900960_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane K03070 - - 0.0 1214.0
YYD1_k127_2900960_1 Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) K00969 - 2.7.7.18 0.00000000000000000000000000000000000000000004565 168.0
YYD1_k127_2900960_2 Outer membrane lipoprotein K05807 - - 0.00000000000000000000000001103 119.0
YYD1_k127_291018_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003574 488.0
YYD1_k127_291018_1 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001016 338.0
YYD1_k127_291018_2 lactoylglutathione lyase activity K01759,K03827 - 4.4.1.5 0.000000000000000000000000000000000000000000001219 168.0
YYD1_k127_291018_3 - - - - 0.0000000000000000000000000000000000006098 146.0
YYD1_k127_2911657_0 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005726 437.0
YYD1_k127_2911657_1 SurA N-terminal domain K03771 - 5.2.1.8 0.00000000000000000000000000000000000000000000000000000000000000000000000003005 267.0
YYD1_k127_2911657_2 PPIC-type PPIASE domain K03770 - 5.2.1.8 0.00000000000000000000000000000000000000000000000284 192.0
YYD1_k127_2945378_0 Zinc-binding dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001442 377.0
YYD1_k127_2945378_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002773 276.0
YYD1_k127_2945378_2 Conserved TM helix - - - 0.000000000000000000000000000000000000000000000000005267 202.0
YYD1_k127_2945378_3 Domain of unknown function (DUF4382) - - - 0.000000000000000000000000000000000000000000001261 171.0
YYD1_k127_2945378_4 Belongs to the NiCoT transporter (TC 2.A.52) family K07241 - - 0.0000000000000000000000001033 116.0
YYD1_k127_2952741_0 TIGRFAM succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 - 1.3.5.1,1.3.5.4 5.621e-291 899.0
YYD1_k127_2985929_0 Phage integrase, N-terminal SAM-like domain K04763 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008743 324.0
YYD1_k127_2985929_1 Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) K01770,K12506 - 2.7.7.60,4.6.1.12 0.000000000000000000000000000000000000000000001699 170.0
YYD1_k127_2985929_2 SNARE associated Golgi protein - - - 0.00000000000000000000000000006836 128.0
YYD1_k127_2985984_0 COG0477 Permeases of the major facilitator superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009823 426.0
YYD1_k127_2985984_1 Pyridoxal-phosphate dependent enzyme K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001931 366.0
YYD1_k127_2985984_2 - - - - 0.0000000000000000005811 90.0
YYD1_k127_2985984_3 - - - - 0.0000000004152 66.0
YYD1_k127_2987586_0 Bacterial protein of unknown function (DUF937) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005247 248.0
YYD1_k127_2987586_1 transglycosylase associated protein - - - 0.000000000000000000000000000004527 121.0
YYD1_k127_2987586_2 - - - - 0.000000000000000000001778 100.0
YYD1_k127_2987586_3 FR47-like protein - - - 0.00000000000007598 78.0
YYD1_k127_2998734_0 Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001469 416.0
YYD1_k127_2998734_1 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003058 340.0
YYD1_k127_2998734_2 PFAM Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000006881 241.0
YYD1_k127_2998734_3 4 iron, 4 sulfur cluster binding K02572,K02573 - - 0.0000000000000000000000000000000002253 139.0
YYD1_k127_2998734_4 Cupin - - - 0.000000000000000001078 85.0
YYD1_k127_2998734_5 Protein conserved in bacteria - - - 0.000004365 59.0
YYD1_k127_3006839_0 AcrB/AcrD/AcrF family K03296 - - 2.052e-317 993.0
YYD1_k127_3034004_0 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine K00831 - 2.6.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001916 437.0
YYD1_k127_3034004_1 D-isomer specific 2-hydroxyacid dehydrogenase catalytic K00058 - 1.1.1.399,1.1.1.95 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001435 425.0
YYD1_k127_3034004_2 sulfurtransferase K01011 - 2.8.1.1,2.8.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004596 298.0
YYD1_k127_3034004_3 PFAM Uncharacterised conserved protein UCP033563 - - - 0.0000000000000000000000000000000000000000000000000000000463 200.0
YYD1_k127_3034004_4 PFAM Fe-S metabolism associated K02426 - - 0.0000000000000000000000000004797 120.0
YYD1_k127_3035128_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 558.0
YYD1_k127_3035128_1 Belongs to the RNA methyltransferase TrmD family K00554 - 2.1.1.228 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002663 282.0
YYD1_k127_3035128_2 - - - - 0.00000000000000000000000000000000000000000000000002406 190.0
YYD1_k127_3035128_3 This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site K02884 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000000001658 158.0
YYD1_k127_3035128_4 Belongs to the bacterial ribosomal protein bS16 family K02959 - - 0.00000000000000000000008727 99.0
YYD1_k127_3035128_5 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 GO:0008150,GO:0040007 - 0.000000000000000002399 94.0
YYD1_k127_3035128_6 Belongs to the UPF0754 family - - - 0.00000000002468 75.0
YYD1_k127_3037326_0 Type II/IV secretion system protein K02283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003126 294.0
YYD1_k127_3037326_1 ATPase MipZ K02282 - - 0.0000000000000000000000000000000000000000001125 177.0
YYD1_k127_3037326_2 Putative Flp pilus-assembly TadE/G-like - - - 0.000001027 61.0
YYD1_k127_3073672_0 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 367.0
YYD1_k127_3073672_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000004375 228.0
YYD1_k127_3103569_0 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000000000000226 243.0
YYD1_k127_3103569_1 CarboxypepD_reg-like domain K02014 - - 0.00000000000000000000000000000000000000002387 169.0
YYD1_k127_3103569_2 Putative lumazine-binding - - - 0.000000000000000000000000000009311 125.0
YYD1_k127_3130136_0 Belongs to the ATCase OTCase family K09065 GO:0000050,GO:0003674,GO:0003824,GO:0004585,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016740,GO:0016741,GO:0016743,GO:0019627,GO:0019752,GO:0034641,GO:0042450,GO:0043436,GO:0043603,GO:0043604,GO:0043857,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:0071941,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.1.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004106 326.0
YYD1_k127_3130136_1 TIGRFAM argininosuccinate lyase K01755 - 4.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002728 308.0
YYD1_k127_3130136_2 PFAM Aminotransferase class-III K00821 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 294.0
YYD1_k127_3130136_3 XdhC and CoxI family K07402 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004195 278.0
YYD1_k127_3130136_4 Belongs to the acetylglutamate kinase family. ArgB subfamily K00930 - 2.7.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000004255 273.0
YYD1_k127_3130136_5 Peptidase dimerisation domain K01438 - 3.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000001566 252.0
YYD1_k127_3130136_6 Protein of unknown function, DUF393 - - - 0.000000000000000000000000000000003072 139.0
YYD1_k127_3130136_7 Regulates arginine biosynthesis genes K03402 - - 0.000000000000000000000000008971 123.0
YYD1_k127_3130136_8 MobA-Related Protein K07141 - 2.7.7.76 0.000000000001043 74.0
YYD1_k127_3144487_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004837 436.0
YYD1_k127_3144487_1 Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA K00784 - 3.1.26.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 356.0
YYD1_k127_3144487_2 it plays a direct role in the translocation of protons across the membrane K02108 - - 0.00000000000000000000000003979 117.0
YYD1_k127_3144487_3 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter - - - 0.0000441 51.0
YYD1_k127_3144487_4 ABC-type transport system involved in resistance to organic solvents periplasmic component K02067 - - 0.0001516 48.0
YYD1_k127_3169764_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000835 484.0
YYD1_k127_3169764_1 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001966 424.0
YYD1_k127_3169764_10 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 - - 0.0000000000000000000000000000000000000009978 153.0
YYD1_k127_3169764_11 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000000000000000000006112 149.0
YYD1_k127_3169764_12 One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit K02895 - - 0.000000000000000000000000000000000000206 144.0
YYD1_k127_3169764_13 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 - - 0.000000000000000000000000000000000008204 141.0
YYD1_k127_3169764_14 Binds to the 23S rRNA K02876 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000003882 148.0
YYD1_k127_3169764_15 Involved in the binding of tRNA to the ribosomes K02946 - - 0.000000000000000000000000000000001169 130.0
YYD1_k127_3169764_16 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0008150,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0040007,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000002255 126.0
YYD1_k127_3169764_17 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.000000000000000000000004479 104.0
YYD1_k127_3169764_18 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 - - 0.0000000000000000000006009 96.0
YYD1_k127_3169764_19 Ribosomal protein L30p/L7e K02907 - - 0.0000000000000000003644 89.0
YYD1_k127_3169764_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 352.0
YYD1_k127_3169764_20 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.000000000000000004177 89.0
YYD1_k127_3169764_21 Ribosomal L29 protein K02904 - - 0.0000000002142 63.0
YYD1_k127_3169764_22 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000001251 53.0
YYD1_k127_3169764_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007225 281.0
YYD1_k127_3169764_4 Forms part of the polypeptide exit tunnel K02926 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002722 255.0
YYD1_k127_3169764_5 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 - - 0.00000000000000000000000000000000000000000000000000000000000000000003195 237.0
YYD1_k127_3169764_6 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.00000000000000000000000000000000000000000000000000000000000000003299 228.0
YYD1_k127_3169764_7 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 - - 0.00000000000000000000000000000000000000000000000000000000000000024 229.0
YYD1_k127_3169764_8 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 - - 0.00000000000000000000000000000000000000000000000000000000000154 212.0
YYD1_k127_3169764_9 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 - - 0.000000000000000000000000000000000000000000000000000000000002288 211.0
YYD1_k127_3172853_0 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001336 328.0
YYD1_k127_3172853_1 Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S K03149 - 2.8.1.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002561 313.0
YYD1_k127_3172853_10 thiamine diphosphate biosynthetic process K03149,K03154 GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042364,GO:0042723,GO:0042724,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.8.1.10 0.00000000000002155 74.0
YYD1_k127_3172853_11 serine threonine protein kinase K08884,K12132 GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564 2.7.11.1 0.0000000000006306 81.0
YYD1_k127_3172853_2 Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus K00604 - 2.1.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 296.0
YYD1_k127_3172853_3 Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA K03500 - 2.1.1.176 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009604 284.0
YYD1_k127_3172853_4 Ribulose-phosphate 3 epimerase family K01783 - 5.1.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002242 269.0
YYD1_k127_3172853_5 Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) K00773 - 2.4.2.29 0.000000000000000000000000000000000000000000000000000000000000000002273 230.0
YYD1_k127_3172853_6 Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions K01462 - 3.5.1.88 0.00000000000000000000000000000000000000000009747 165.0
YYD1_k127_3172853_7 Glutathione peroxidase - - - 0.00000000000000000000000000000000000009153 149.0
YYD1_k127_3172853_8 Preprotein translocase subunit K03210 - - 0.0000000000000000006181 90.0
YYD1_k127_3172853_9 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000001033 93.0
YYD1_k127_318705_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K03520 - 1.2.5.3 3.935e-285 893.0
YYD1_k127_318705_1 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.000000000000000000000000000001378 122.0
YYD1_k127_3190001_0 Dipeptidyl peptidase IV (DPP IV) K01278 - 3.4.14.5 1.336e-260 823.0
YYD1_k127_3190001_1 GMC oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001794 438.0
YYD1_k127_3190001_2 Domain of unknown function (DUF1611_N) Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007074 373.0
YYD1_k127_3190001_3 PspA/IM30 family K03969 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000006 269.0
YYD1_k127_3190001_4 - - - - 0.00000000000000000000000000000000001064 141.0
YYD1_k127_3190001_5 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000003327 105.0
YYD1_k127_3233198_0 Fumarate reductase flavoprotein C-term K00239 - 1.3.5.1,1.3.5.4 7.913e-218 692.0
YYD1_k127_3233198_1 Catalyzes the reversible oxidation of malate to oxaloacetate K00024 - 1.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000303 469.0
YYD1_k127_3233198_2 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000008545 259.0
YYD1_k127_3233198_3 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000272 193.0
YYD1_k127_3233198_4 - K00241 - - 0.000000000000000000000000000000000000000000004569 173.0
YYD1_k127_3245193_0 Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate K10206 - 2.6.1.83 0.000000000000000007874 86.0
YYD1_k127_3245193_1 - - - - 0.00000000000296 77.0
YYD1_k127_3245193_3 Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) K01885 - 6.1.1.17 0.000001522 51.0
YYD1_k127_3293473_0 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002279 372.0
YYD1_k127_3293473_1 metallopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002463 260.0
YYD1_k127_3293473_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000004498 252.0
YYD1_k127_3293473_3 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000000000000000000006889 183.0
YYD1_k127_3293473_4 Domain of unknown function (DUF4261) - - - 0.00007501 53.0
YYD1_k127_3293716_0 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source K00820 - 2.6.1.16 2.823e-264 826.0
YYD1_k127_3293716_1 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 346.0
YYD1_k127_3296412_0 TonB dependent receptor - - - 1.044e-247 794.0
YYD1_k127_3296412_1 O-acyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 360.0
YYD1_k127_3296412_2 Thioesterase K07107 - - 0.0000000000000000000000000000000001535 138.0
YYD1_k127_3296412_3 Phosphoribosyl transferase domain K07100 GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0030312,GO:0044424,GO:0044444,GO:0044464,GO:0071944 - 0.0000000000000000000000000000005722 130.0
YYD1_k127_3296412_4 chlorophyll binding K16191,K20276 - - 0.000001084 56.0
YYD1_k127_3302625_0 beta-keto acid cleavage enzyme - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001049 430.0
YYD1_k127_3302625_1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain - - - 0.00000000000000000000000000000000000000000000000000000002706 205.0
YYD1_k127_3302625_2 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000008915 67.0
YYD1_k127_3316975_0 ABC transporter K01990,K09695 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 355.0
YYD1_k127_3316975_1 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006462 293.0
YYD1_k127_3316975_2 negative regulation of transcription, DNA-templated - GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006974,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000000000000002171 134.0
YYD1_k127_3316975_3 Membrane dipeptidase (Peptidase family M19) - - - 0.000000000000000000000000000001873 124.0
YYD1_k127_3330883_0 SusD family K21572 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001148 391.0
YYD1_k127_3330883_1 CarboxypepD_reg-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002162 285.0
YYD1_k127_3330883_2 Vitamin K epoxide reductase family - - - 0.00000004452 56.0
YYD1_k127_3371899_0 Type I phosphodiesterase / nucleotide pyrophosphatase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008529 369.0
YYD1_k127_3371899_1 Multicopper oxidase K00368 - 1.7.2.1 0.00000000000000000000000000000000000000000000000000000000000000000000003728 254.0
YYD1_k127_3371899_2 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000001189 130.0
YYD1_k127_3371899_3 2 iron, 2 sulfur cluster binding K13643 - - 0.00000000000000000002986 95.0
YYD1_k127_3416501_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001231 582.0
YYD1_k127_3416501_1 Putative glutamine amidotransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001727 541.0
YYD1_k127_3416501_2 Domain of unknown function (DUF4159) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001664 276.0
YYD1_k127_3416501_3 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000000000000000000000000002529 241.0
YYD1_k127_3416501_4 Peptidase C14 caspase catalytic subunit p20 - - - 0.00000000000000000000000000000000000000000003379 177.0
YYD1_k127_3418168_0 Elongation factor G C-terminus K06207 - - 6.96e-280 873.0
YYD1_k127_3418168_1 Transporter associated domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 398.0
YYD1_k127_3418168_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000000000000000003208 173.0
YYD1_k127_3456741_0 Reversible hydration of carbon dioxide K01673 - 4.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000005844 297.0
YYD1_k127_3456741_1 MFS/sugar transport protein K16211 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008639 272.0
YYD1_k127_3456741_2 RibD C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000002182 210.0
YYD1_k127_3456741_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000186 193.0
YYD1_k127_3456741_4 Scramblase - - - 0.00000000000000000000000000000000000000000000008797 179.0
YYD1_k127_3456741_5 epimerase K00486 - 1.14.13.9 0.00000000000000000000000000000000000000000127 165.0
YYD1_k127_3456741_6 Haem-binding uptake, Tiki superfamily, ChaN - - - 0.000000000000000000000000000000003486 142.0
YYD1_k127_3467461_0 Eukaryotic DNA topoisomerase I, catalytic core K03168 - 5.99.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 402.0
YYD1_k127_3467461_1 YjbR - - - 0.000000000000000009525 85.0
YYD1_k127_3471324_0 Thymidine kinase K00857 - 2.7.1.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007711 279.0
YYD1_k127_3471324_1 Aminotransferase K00812 - 2.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007444 281.0
YYD1_k127_3471324_2 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.0000000000000000000000000000000000000000000003542 174.0
YYD1_k127_3471324_3 The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein K02437 - - 0.000000000000000000000000000000000000000000006975 170.0
YYD1_k127_3471324_4 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 0.000000000000000000000000000000000000002607 153.0
YYD1_k127_3471324_5 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K03530 - - 0.00000000000000000000002397 102.0
YYD1_k127_3471324_6 DEAD-box RNA helicase involved in K05592 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032270,GO:0033554,GO:0033592,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070035,GO:0070417,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097617,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000112 3.6.4.13 0.000002414 60.0
YYD1_k127_3473499_0 phosphonoacetaldehyde hydrolase activity K19270 - 3.1.3.23 0.000000000000000000000000000000000000000000000353 175.0
YYD1_k127_3473499_1 Uncharacterized conserved protein (COG2071) K09166 - - 0.00000000000000000000000000000000000000000000187 169.0
YYD1_k127_3493349_0 Methylmalonyl-CoA mutase K01848 - 5.4.99.2 3.912e-207 672.0
YYD1_k127_3493349_1 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 554.0
YYD1_k127_3493349_10 - - - - 0.0000000000009935 80.0
YYD1_k127_3493349_11 Domain of unknown function (DUF1844) - - - 0.000000008694 59.0
YYD1_k127_3493349_12 PFAM Late competence development protein ComFB K02241 - - 0.000004507 58.0
YYD1_k127_3493349_2 Phosphotransfer between the C1 and C5 carbon atoms of pentose K01839 - 5.4.2.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004936 464.0
YYD1_k127_3493349_3 Fructose-1-6-bisphosphatase, N-terminal domain K03841 - 3.1.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002512 385.0
YYD1_k127_3493349_4 Competence protein K02238 - - 0.00000000000000000000000000000000000000000000000000000000000002527 231.0
YYD1_k127_3493349_5 Serine hydrolase (FSH1) - - - 0.00000000000000000000000000000000000000000001039 179.0
YYD1_k127_3493349_6 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.000000000000000000000000000000000000527 143.0
YYD1_k127_3493349_7 - - - - 0.00000000000000000000000000000000001214 156.0
YYD1_k127_3493349_8 Protein of unknown function (DUF983) - - - 0.000000000000000000000004265 112.0
YYD1_k127_3493349_9 Competence protein K02238 - - 0.0000000000004655 79.0
YYD1_k127_3538392_0 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009168 421.0
YYD1_k127_3538392_1 NAD(P)-binding Rossmann-like domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000662 281.0
YYD1_k127_3538392_2 AIR carboxylase K06898 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001366 249.0
YYD1_k127_3538392_3 Mediates influx of magnesium ions K03284 - - 0.000000000000000000000000000000000000000000000000000000000000000000009365 254.0
YYD1_k127_3538392_4 Glycosyl transferase family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000007573 237.0
YYD1_k127_3538392_5 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.000000000000000000000000000000000000000000000000004513 186.0
YYD1_k127_3538392_6 TIGRFAM diguanylate cyclase (GGDEF) domain - - - 0.000000000000000000000000000001239 138.0
YYD1_k127_3538392_7 UDP-4-amino-4-deoxy-L-arabinose aminotransferase K13010 - 2.6.1.102 0.00000000000000000000000000006824 121.0
YYD1_k127_3538392_8 PFAM Tetratricopeptide - - - 0.00000000001161 66.0
YYD1_k127_3538392_9 COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - - - 0.0002654 48.0
YYD1_k127_3554761_0 The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor K00281 - 1.4.4.2 1.419e-242 763.0
YYD1_k127_3554761_1 GDSL-like Lipase/Acylhydrolase family K10804 - 3.1.1.5 0.0000000000000044 84.0
YYD1_k127_3564126_0 transcription factor binding K15836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002595 474.0
YYD1_k127_3564126_1 PFAM V-type ATPase 116 kDa K02123 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001511 326.0
YYD1_k127_3564126_2 Proline racemase - - - 0.0000000000000000000000000000000000000000000000000000000006843 213.0
YYD1_k127_3564126_3 ATP hydrolysis coupled proton transport K02110,K02124 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000004663 85.0
YYD1_k127_3564126_4 subunit (C K02119 - - 0.000000000004628 76.0
YYD1_k127_3592355_0 ABC transporter transmembrane region K11085 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 476.0
YYD1_k127_3592355_1 DUF based on E. rectale Gene description (DUF3880) K06320 - - 0.000000000000000000000000001069 126.0
YYD1_k127_3592355_2 Glycosyl transferases group 1 - - - 0.00000000000000001879 85.0
YYD1_k127_3630572_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005013 539.0
YYD1_k127_3630572_1 Aminoglycoside phosphotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003892 383.0
YYD1_k127_3630572_2 COG1960 Acyl-CoA dehydrogenases - - - 0.0000000000000000000000000000000000000000000000000000000000002427 214.0
YYD1_k127_3630572_3 membrane - - - 0.0000000001122 70.0
YYD1_k127_3633105_0 radical SAM domain protein - - - 4.047e-210 669.0
YYD1_k127_3668366_0 Catalyzes the synthesis of GMP from XMP K01951 GO:0003674,GO:0003824,GO:0003921,GO:0003922,GO:0006139,GO:0006163,GO:0006164,GO:0006177,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046037,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659 6.3.5.2 2.573e-204 648.0
YYD1_k127_3668366_1 protoporphyrinogen oxidase activity K01854 - 5.4.99.9 0.000000000000000000000000000000000000002052 151.0
YYD1_k127_3668366_2 Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine K01586 - 4.1.1.20 0.00000000002958 64.0
YYD1_k127_3677781_0 Fumarylacetoacetate (FAA) hydrolase K01555 - 3.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006063 498.0
YYD1_k127_3677781_1 D-aminopeptidase K16203 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005064 325.0
YYD1_k127_3677781_2 histidine-tRNA ligase activity K01892,K02502 - 6.1.1.21 0.00000000000000000000000000000000000000000000000000000000000000000003295 241.0
YYD1_k127_3677781_3 PFAM 3-hydroxyacyl-CoA dehydrogenase domain protein - - - 0.0000000000000000000000000000000000000000000000000000003617 205.0
YYD1_k127_3677781_4 FAD dependent oxidoreductase - - - 0.00000000000000000000001044 102.0
YYD1_k127_3685902_0 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003204 321.0
YYD1_k127_3685902_1 ATPase family associated with various cellular activities (AAA) K03924 - - 0.0000000000000000000000000000000000000000000000008203 178.0
YYD1_k127_3685902_2 Aerotolerance regulator N-terminal - - - 0.000000000000000000000000000000000000000000001909 177.0
YYD1_k127_3686218_0 Alpha mannosidase, middle domain K01191 - 3.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004967 520.0
YYD1_k127_3686218_1 Protein of unknown function (DUF455) K11529 - 2.7.1.165 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001892 390.0
YYD1_k127_3686218_2 TIGRFAM intracellular protease, PfpI family K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000007033 235.0
YYD1_k127_3686218_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.0000000000000000000000000000003384 125.0
YYD1_k127_3705344_0 polysaccharide deacetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001441 419.0
YYD1_k127_3705344_1 3-hydroxyanthranilate 3,4-dioxygenase activity - - - 0.00000000000000000000000000000000000000000006754 163.0
YYD1_k127_3705344_3 Metallo-beta-lactamase superfamily - - - 0.000000000000433 75.0
YYD1_k127_373071_0 COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL CutL homologs K03520 - 1.2.5.3 0.0 1029.0
YYD1_k127_373071_1 Evidence 2a Function of homologous gene experimentally demonstrated in an other organism K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000002289 175.0
YYD1_k127_375041_0 lysine biosynthetic process via aminoadipic acid - - - 1.313e-240 773.0
YYD1_k127_375041_1 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000703 476.0
YYD1_k127_375041_2 Putative zinc-binding metallo-peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001895 471.0
YYD1_k127_375041_3 LVIVD repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002946 400.0
YYD1_k127_375041_4 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000002391 139.0
YYD1_k127_375041_6 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.00000000002306 65.0
YYD1_k127_3781969_0 TonB dependent receptor - - - 0.0000000000000000000000000000000000000000000000000000000001965 214.0
YYD1_k127_3781969_1 - - - - 0.000000000000000000000000000000000000000000000000000002695 207.0
YYD1_k127_3782381_0 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K15633 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000003318 286.0
YYD1_k127_3782381_1 Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH K02379 - - 0.00000000000000000003145 99.0
YYD1_k127_3782381_2 - - - - 0.00000000000000000003441 101.0
YYD1_k127_3782381_3 PFAM 6-pyruvoyl tetrahydropterin K01737 - 4.1.2.50,4.2.3.12 0.0000000000000000001053 93.0
YYD1_k127_3803800_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002649 314.0
YYD1_k127_3803800_1 Maf-like protein K06287 - - 0.000000000000000000000000000000000000000000000000001448 188.0
YYD1_k127_3803800_2 rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality K07560 - - 0.00000000000000000000000000000000000008005 143.0
YYD1_k127_3803800_3 type II secretion system protein E K02652 - - 0.0000000005743 66.0
YYD1_k127_3809517_0 PFAM peptidase U62 modulator of DNA gyrase K03568 - - 1.079e-244 765.0
YYD1_k127_3809517_1 Peptidase U62 modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003258 326.0
YYD1_k127_3812271_0 YceI-like domain - - - 0.000000002332 68.0
YYD1_k127_3812271_1 Bacterial regulatory protein, Fis family - - - 0.0000004957 57.0
YYD1_k127_3842454_0 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000005476 229.0
YYD1_k127_3842454_1 Phospholipase D. Active site motifs. K06131 - - 0.00000000000000000000000000000000000000000000002368 179.0
YYD1_k127_3842454_2 ECF sigma factor K03088 - - 0.000000000000000000000000000000000000000007844 167.0
YYD1_k127_3842454_3 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000001451 136.0
YYD1_k127_3847536_0 efflux transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008789 531.0
YYD1_k127_3847536_1 Bacterial transcriptional repressor C-terminal - - - 0.0000000000000000000000000000000000000000000000000006659 190.0
YYD1_k127_3850459_0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K00074 - 1.1.1.157 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007261 412.0
YYD1_k127_3850459_1 phenylacetic acid degradation protein K02614 - - 0.00000000000000000000000000000000002571 142.0
YYD1_k127_3850459_2 Transketolase, pyrimidine binding domain K11381 - 1.2.4.4 0.0000000000328 64.0
YYD1_k127_3857539_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007277 458.0
YYD1_k127_3857539_1 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 - - 0.0000000000000000000000000000000000000000000000000000000000000001001 225.0
YYD1_k127_3857539_2 Ribosomal protein L17 K02879 - - 0.000000000000000000000000000000000001253 142.0
YYD1_k127_3872678_0 E1-E2 ATPase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000008251 302.0
YYD1_k127_3872678_1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000002564 242.0
YYD1_k127_3872678_2 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000003262 209.0
YYD1_k127_3872678_3 Belongs to the small heat shock protein (HSP20) family K13993 - - 0.000000000000000003943 90.0
YYD1_k127_3872678_4 Protein of unknown function (DUF2892) - - - 0.000000000007308 68.0
YYD1_k127_3872678_5 Mechanosensitive ion channel K22044 - - 0.000000009133 64.0
YYD1_k127_3872678_6 Belongs to the universal stress protein A family - - - 0.0002572 51.0
YYD1_k127_3885728_0 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004501 322.0
YYD1_k127_3885728_1 - - - - 0.0000000000005758 77.0
YYD1_k127_3890225_0 - - - - 0.0000000000000000000000000000000000000000000000000006618 205.0
YYD1_k127_3890225_1 Serine aminopeptidase, S33 - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000006543 114.0
YYD1_k127_3890225_2 Sugar-specific transcriptional regulator TrmB K01534 - 3.6.3.3,3.6.3.5 0.000000007903 65.0
YYD1_k127_3899083_0 Binding-protein-dependent transport system inner membrane component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000579 333.0
YYD1_k127_3899083_1 ABC-type sugar transport systems, permease components K02025 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003749 322.0
YYD1_k127_3899083_2 PFAM Glycoside hydrolase 15-related - - - 0.00000000000000000000000000000000000006769 149.0
YYD1_k127_3905773_0 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 - 6.1.1.7 4.353e-205 664.0
YYD1_k127_3905773_1 protein tyrosine phosphatase activity K01104 - 3.1.3.48 0.000000000000001513 85.0
YYD1_k127_3934284_0 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K01766,K11717 - 2.8.1.7,4.4.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000379 477.0
YYD1_k127_3934284_1 Uncharacterized protein family (UPF0051) K09015 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002009 347.0
YYD1_k127_3940796_0 COG1788 Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit K01028 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007856 319.0
YYD1_k127_3940796_1 Coenzyme A transferase K01029 - 2.8.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002374 299.0
YYD1_k127_3940796_2 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000005113 226.0
YYD1_k127_3940796_3 Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) K00788 - 2.5.1.3 0.0000000000000000000000000000000003568 140.0
YYD1_k127_3940796_4 Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation K07082 - - 0.0000000000000000000001336 100.0
YYD1_k127_397094_0 E1-E2 ATPase K17686 - 3.6.3.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002182 485.0
YYD1_k127_4008885_0 Amino acid permease K03294 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002177 394.0
YYD1_k127_4008885_1 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002523 259.0
YYD1_k127_4008885_2 - - - - 0.00000000000000000000000000000000000000009213 154.0
YYD1_k127_4017250_0 membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001342 356.0
YYD1_k127_4017250_1 succinate dehydrogenase or fumarate reductase, flavoprotein K00239 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000006858 263.0
YYD1_k127_4052567_0 Thiolase, C-terminal domain K02615 - 2.3.1.174,2.3.1.223 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009384 556.0
YYD1_k127_4052567_1 Enoyl-CoA hydratase/isomerase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 314.0
YYD1_k127_4052567_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.0000000000000000000001171 109.0
YYD1_k127_4052567_3 carbonic anhydrase K02617,K08279 - - 0.0000000000000000000007793 97.0
YYD1_k127_4069234_0 Transglycosylase K05366 - 2.4.1.129,3.4.16.4 7.441e-216 691.0
YYD1_k127_4069234_1 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 GO:0003674,GO:0003824,GO:0004812,GO:0004831,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016875,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564 6.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003024 478.0
YYD1_k127_4069234_2 HNH nucleases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001785 295.0
YYD1_k127_4069234_3 Amidohydrolase family K12960,K20810 - 3.5.4.28,3.5.4.31,3.5.4.40 0.00000000000000000000000000000000000000000000000000000000000000000000005164 259.0
YYD1_k127_4071726_0 3' exoribonuclease, RNase T-like K03656,K03657 - 3.6.4.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004969 415.0
YYD1_k127_4071726_1 PFAM peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005933 329.0
YYD1_k127_4071726_2 Proline dehydrogenase K00318 - - 0.00000000000000000000000000000000000000000000000000000000000000003697 235.0
YYD1_k127_4071726_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.00000000000000000000000000000000000000000000000000275 190.0
YYD1_k127_4071726_4 - - - - 0.0000000000000000000001591 102.0
YYD1_k127_4071726_5 Biopolymer transport protein ExbD/TolR K03560 - - 0.000000000000000000007573 98.0
YYD1_k127_4071726_6 Biopolymer transport protein ExbD/TolR K03559,K03560 - - 0.000000000004991 72.0
YYD1_k127_4071726_7 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.000000000008372 76.0
YYD1_k127_4074876_0 Diguanylate cyclase, GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006759 317.0
YYD1_k127_4074876_1 - - - - 0.000000008957 65.0
YYD1_k127_4081427_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008934 355.0
YYD1_k127_4081427_1 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001226 259.0
YYD1_k127_4081427_2 PFAM transglutaminase domain protein - - - 0.000000003164 69.0
YYD1_k127_4084054_0 Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP) K00762 - 2.4.2.10 0.00000000000000000000000000000000000000000000001077 176.0
YYD1_k127_4084054_1 Helix-turn-helix domain - - - 0.000000000000000000000000000000000000000000002035 177.0
YYD1_k127_4084054_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000008224 93.0
YYD1_k127_4090374_0 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001654 391.0
YYD1_k127_4090374_1 ABC transporter K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003315 329.0
YYD1_k127_4090374_2 ABC-2 family transporter protein K01992 - - 0.0000000000000000000000000000000000000000000000000000000000005038 222.0
YYD1_k127_4120394_0 Polysulphide reductase, NrfD K00185 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 512.0
YYD1_k127_4120394_1 4Fe-4S dicluster domain K00184 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008038 413.0
YYD1_k127_4120394_2 stress-induced mitochondrial fusion - - - 0.0000000000000000000000000000000000000000000000000000000000000000001461 237.0
YYD1_k127_4120394_3 Cytochrome c7 and related cytochrome c - - - 0.00000000000000000000000001886 114.0
YYD1_k127_412860_0 Elongator protein 3, MiaB family, Radical SAM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003792 514.0
YYD1_k127_412860_1 SMART Elongator protein 3 MiaB NifB - - - 0.000000000000000000000000000000000002862 146.0
YYD1_k127_412860_2 acetyltransferase - - - 0.0000000000000000000000009877 108.0
YYD1_k127_4136420_0 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP K03593 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002415 402.0
YYD1_k127_4136420_1 - - - - 0.0000000000000000000000000000000000000000000000000000000002094 207.0
YYD1_k127_4136420_2 PFAM nitrogen-fixing NifU domain protein - - - 0.00000000000001229 75.0
YYD1_k127_4136420_3 membrane - - - 0.00000000000007668 78.0
YYD1_k127_4141343_0 Biotin carboxylase C-terminal domain K01961 - 6.3.4.14,6.4.1.2 9.69e-218 684.0
YYD1_k127_4141343_1 Type II/IV secretion system protein K02669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000593 505.0
YYD1_k127_4141343_2 Creatinase/Prolidase N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003442 338.0
YYD1_k127_4141343_3 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.000000000000000000000000000000000000000000000002126 180.0
YYD1_k127_4148297_0 ATPase family associated with various cellular activities (AAA) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008431 408.0
YYD1_k127_4148297_2 transferase activity, transferring glycosyl groups - - - 0.00000698 50.0
YYD1_k127_4172877_0 Belongs to the carbamoyltransferase HypF family K04656 - - 1.581e-195 644.0
YYD1_k127_4172877_1 Hydrogenase formation hypA family K04654 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002066 496.0
YYD1_k127_4172877_2 hydrogenase expression formation protein HypE K04655 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002274 474.0
YYD1_k127_4172877_3 Hydrogenase accessory protein HypB K04652 - - 0.00000000000000000000000000000000000000000000000000000000000000001574 231.0
YYD1_k127_4172877_4 Enoyl-CoA hydratase carnithine racemase K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000005399 179.0
YYD1_k127_4172877_5 hydrogenase maturation protease K03605 - - 0.000000000000000000000000000000000003766 142.0
YYD1_k127_4172877_6 respiratory electron transport chain K03620 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006091,GO:0006113,GO:0008150,GO:0008152,GO:0009061,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0020037,GO:0031224,GO:0031226,GO:0032991,GO:0044237,GO:0044425,GO:0044459,GO:0044464,GO:0044569,GO:0045333,GO:0046906,GO:0048037,GO:0055114,GO:0071944,GO:0097159,GO:1901363,GO:1902494 - 0.00000000000000000000000000000000003141 139.0
YYD1_k127_4172877_7 HupF/HypC family K04653 - - 0.0000000000000000001182 93.0
YYD1_k127_4172877_8 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 GO:0003674,GO:0003824,GO:0004644,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0016740,GO:0016741,GO:0016742,GO:0033554,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716 2.1.2.2 0.00000001576 67.0
YYD1_k127_4172877_9 nickel cation binding K04651 - - 0.0005324 49.0
YYD1_k127_4184394_0 histidine kinase A domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000001653 231.0
YYD1_k127_4184394_1 Belongs to the short-chain dehydrogenases reductases (SDR) family K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000001325 196.0
YYD1_k127_4184394_2 Belongs to the D-alanine--D-alanine ligase family K01921,K01955 - 6.3.2.4,6.3.5.5 0.00000000000000000000000000000001074 133.0
YYD1_k127_4184394_3 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000006614 125.0
YYD1_k127_4184394_4 BFD-like [2Fe-2S] binding domain - - - 0.0000000002651 66.0
YYD1_k127_4197942_0 3-beta hydroxysteroid dehydrogenase/isomerase family K01710,K08678 - 4.1.1.35,4.2.1.46 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001736 416.0
YYD1_k127_4197942_1 UDP binding domain K00012 - 1.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000003301 259.0
YYD1_k127_4197942_2 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000142 145.0
YYD1_k127_4201984_0 Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp) K01876 - 6.1.1.12 6.822e-208 662.0
YYD1_k127_4201984_1 Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs K06941 - 2.1.1.192 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002216 382.0
YYD1_k127_4201984_2 Phosphate acyltransferases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001099 276.0
YYD1_k127_4201984_3 PhoH-like protein K06217 - - 0.000000000000000000000000000000001381 134.0
YYD1_k127_4207738_0 Domain of unknown function (DUF5117) - - - 1.097e-287 907.0
YYD1_k127_4207738_1 Ferric reductase like transmembrane component - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001376 323.0
YYD1_k127_4207738_11 - - - - 0.0000000001276 67.0
YYD1_k127_4207738_2 SNARE associated Golgi protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000196 253.0
YYD1_k127_4207738_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000004989 235.0
YYD1_k127_4207738_4 - - - - 0.000000000000000000000000000000000000000000000000000000000000102 217.0
YYD1_k127_4207738_5 Acyl-transferase K00655 - 2.3.1.51 0.0000000000000000000000000000000000000000000000000000000003399 218.0
YYD1_k127_4207738_6 Sigma-70, region 4 K03088 GO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005618,GO:0005623,GO:0006355,GO:0006950,GO:0006979,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016987,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0033554,GO:0034605,GO:0043254,GO:0044087,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051409,GO:0051716,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2000142,GO:2001141 - 0.000000000000000000000000000000000000000000000000001858 190.0
YYD1_k127_4207738_7 Transport and Golgi organisation 2 - - - 0.0000000000000000000000000000000004803 145.0
YYD1_k127_4207738_8 - - - - 0.00000000000000000000000000000048 132.0
YYD1_k127_4207738_9 DinB family - - - 0.00000000000000000000000000000136 128.0
YYD1_k127_42245_0 Polyprenyl synthetase K02523 - 2.5.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002424 340.0
YYD1_k127_42245_1 SurA N-terminal domain K03770 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002 330.0
YYD1_k127_42245_2 Domain of unknown function (DUF4321) - - - 0.000000000000000000000001309 105.0
YYD1_k127_42245_3 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00000000000001398 76.0
YYD1_k127_42245_4 Tetratricopeptide repeat - - - 0.0000000001466 67.0
YYD1_k127_4230780_0 Sigma-70 region 2 K03088 - - 0.0000000000000000000000000000000000158 141.0
YYD1_k127_4230780_1 Copper binding proteins, plastocyanin/azurin family K02638 - - 0.0000000000000000000000000004599 129.0
YYD1_k127_4230780_2 phosphatidate phosphatase activity K00901,K01096,K19302 - 2.7.1.107,3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.00000001718 59.0
YYD1_k127_4240459_0 Type II secretion system (T2SS), protein E, N-terminal domain K02652 - - 3.34e-233 737.0
YYD1_k127_4240459_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008526 567.0
YYD1_k127_4240459_2 Type II secretion system (T2SS), protein F K02653 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004432 525.0
YYD1_k127_4240459_3 Predicted permease YjgP/YjgQ family K11720 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000852 290.0
YYD1_k127_4240459_4 Predicted permease YjgP/YjgQ family K07091 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004026 280.0
YYD1_k127_4240459_5 Peptidase M28 - - - 0.0000000000000000000000000000000000000000000000000000000001353 233.0
YYD1_k127_4240459_6 TIGRFAM competence protein ComEA helix-hairpin-helix repeat K02237 - - 0.0000000000000001664 87.0
YYD1_k127_4246561_1 Belongs to the peptidase M20A family. ArgE subfamily K01438 - 3.5.1.16 0.00000000000000000000000000000000005577 140.0
YYD1_k127_4246561_2 Peptidase S15 K06978 - - 0.0000000000000000000000000000000009349 136.0
YYD1_k127_4246561_3 - - - - 0.000000000000000005502 95.0
YYD1_k127_4246561_4 Protein of unknown function (DUF3179) - - - 0.000000005035 63.0
YYD1_k127_4246561_5 Protein of unknown function (DUF433) - - - 0.00009057 54.0
YYD1_k127_4247765_0 Sugar (and other) transporter K08151 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001993 434.0
YYD1_k127_4247765_1 gluconolactonase K01053 - 3.1.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000028 357.0
YYD1_k127_4247765_2 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009145 360.0
YYD1_k127_4247765_3 protein kinase activity K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008934 271.0
YYD1_k127_4247765_4 NAD dependent epimerase/dehydratase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004397 245.0
YYD1_k127_4247765_5 NAD dependent epimerase/dehydratase family - - - 0.000000000000000004119 87.0
YYD1_k127_4259161_0 Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA K01962 - 2.1.3.15,6.4.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004282 400.0
YYD1_k127_4259161_1 Helix-hairpin-helix motif K02337 - 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004484 393.0
YYD1_k127_4259161_2 PSP1 C-terminal conserved region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008281 312.0
YYD1_k127_4288585_0 cytochrome c oxidase subunit I K02274 - 1.9.3.1 2.565e-233 729.0
YYD1_k127_4288585_1 Adenylate cyclase K01768 - 4.6.1.1 0.0001036 52.0
YYD1_k127_431869_0 Catalyzes the attachment of glycine to tRNA(Gly) K01880 - 6.1.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007168 592.0
YYD1_k127_431869_1 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002853 426.0
YYD1_k127_4320785_0 PA domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006261 370.0
YYD1_k127_4320785_1 Appr-1'-p processing enzyme - - - 0.000000000000000000000000000000000000000000000000000001308 197.0
YYD1_k127_4320785_2 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - - - 0.000000000000000000000000000000000002788 143.0
YYD1_k127_4357767_0 Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) K01662 - 2.2.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003495 542.0
YYD1_k127_4357767_1 Polyprenyl synthetase K13789 - 2.5.1.1,2.5.1.10,2.5.1.29 0.00000000000000000000000000000000000000000000000004319 184.0
YYD1_k127_4403634_0 - - - - 0.00000000000000000000000000000001669 142.0
YYD1_k127_4403634_1 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000001395 100.0
YYD1_k127_4438000_0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K01835 - 5.4.2.2 3.01e-223 700.0
YYD1_k127_4443209_0 UbiA prenyltransferase family K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007308 308.0
YYD1_k127_4443209_1 ECF sigma factor K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002336 273.0
YYD1_k127_4443209_2 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000000000000000000000000000000000000000000000000000000000000000000002515 264.0
YYD1_k127_4443209_3 Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN K03186 - 2.5.1.129 0.000000000000000000000000000000000000000000000000000000000000000000000000005705 258.0
YYD1_k127_4443209_4 protein kinase activity - - - 0.0000000000000000000000000000000000000000000001516 191.0
YYD1_k127_4443209_5 Calcineurin-like phosphoesterase superfamily domain K07095 - - 0.000000000000000000000000000000000000000001461 161.0
YYD1_k127_4443209_6 Polymer-forming cytoskeletal - - - 0.00000000000000000000000000568 124.0
YYD1_k127_4443209_7 membrane - - - 0.000000000001921 79.0
YYD1_k127_4443209_8 - - - - 0.000000000005782 73.0
YYD1_k127_444793_0 Biotin-lipoyl like K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001574 374.0
YYD1_k127_444793_1 Outer membrane efflux protein K12340 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001059 262.0
YYD1_k127_444793_2 creatininase K01470,K22232 - 3.5.2.10 0.0000000000000000000000000000000000000004752 157.0
YYD1_k127_444793_3 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000008419 149.0
YYD1_k127_444793_4 GlcNAc-PI de-N-acetylase - - - 0.000000002441 58.0
YYD1_k127_445263_0 Transmembrane exosortase (Exosortase_EpsH) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001477 336.0
YYD1_k127_445263_1 Protein of unknown function (DUF3485) - - - 0.0000000000000000000000000000000000000000000000000000004509 200.0
YYD1_k127_445263_2 glycosyltransferase - - - 0.000000000000000000000000000000000000000000000000000003941 202.0
YYD1_k127_445263_3 Glycosyl transferase family 21 - - - 0.0000000000000008089 83.0
YYD1_k127_4453571_0 Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine K07304 - 1.8.4.11 0.0000000000000000000000000000000000000000000000000000000000000000002878 240.0
YYD1_k127_4453571_1 - - - - 0.000000000008055 71.0
YYD1_k127_4456761_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000674 327.0
YYD1_k127_4456761_1 Aminopeptidase P, N-terminal domain K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000412 293.0
YYD1_k127_4456761_2 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000006243 249.0
YYD1_k127_4456761_3 Transcription elongation factor, N-terminal K03624 - - 0.0000000000000000000000000000000000000000003942 166.0
YYD1_k127_4456761_4 carboxylic ester hydrolase activity - - - 0.00000000000000000000000000000000000000001929 167.0
YYD1_k127_4456761_5 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter - - - 0.0000000000000000000000000000000000000005559 152.0
YYD1_k127_4477967_0 Carbamoyl-phosphate synthase small chain, CPSase domain K01956 - 6.3.5.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001433 472.0
YYD1_k127_4477967_1 Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate K03639 - 4.1.99.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001679 382.0
YYD1_k127_4477967_2 Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) K01803 - 5.3.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000002339 271.0
YYD1_k127_4477967_3 Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions K05788 - - 0.00000000000000000000000000000000000000000004662 166.0
YYD1_k127_4477967_4 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily K03216 - 2.1.1.207 0.000000000000000000000000000000000000000003421 158.0
YYD1_k127_4477967_5 MoaE protein K03635 - 2.8.1.12 0.00000000000000000000000000000000008088 138.0
YYD1_k127_4477967_6 Belongs to the phosphoglycerate kinase family K00927 - 2.7.2.3 0.0000000000000001084 79.0
YYD1_k127_4477967_7 Preprotein translocase SecG subunit K03075 - - 0.000000001183 64.0
YYD1_k127_4477967_8 Acts as a sulfur carrier required for molybdopterin biosynthesis. Component of the molybdopterin synthase complex that catalyzes the conversion of precursor Z into molybdopterin by mediating the incorporation of 2 sulfur atoms into precursor Z to generate a dithiolene group. In the complex, serves as sulfur donor by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. After interaction with MOCS2B, the sulfur is then transferred to precursor Z to form molybdopterin K03635,K21232 GO:0006464,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018315,GO:0019538,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:1901564 2.8.1.12 0.00000004448 58.0
YYD1_k127_4479504_0 Dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 548.0
YYD1_k127_4479504_1 Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 314.0
YYD1_k127_4479504_2 Rdx family K07401 - - 0.0000000557 56.0
YYD1_k127_4485315_0 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236 569.0
YYD1_k127_4499298_0 Threonine dehydratase K01754 - 4.3.1.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001854 321.0
YYD1_k127_4499298_1 Beta-lactamase - - - 0.0000000000000001531 87.0
YYD1_k127_4552744_0 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001486 313.0
YYD1_k127_4554315_0 Amino acid permease - - - 3.276e-226 720.0
YYD1_k127_4554315_1 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000003225 261.0
YYD1_k127_4554315_2 Osmosensitive K channel His kinase sensor K07646 - 2.7.13.3 0.000000000000000000000000000001609 130.0
YYD1_k127_4554315_3 Protein of unknown function (DUF1569) - - - 0.0000000000000000000005109 99.0
YYD1_k127_4568828_0 Erythromycin esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008083 586.0
YYD1_k127_4568828_1 Dienelactone hydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000004421 241.0
YYD1_k127_4603763_0 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 602.0
YYD1_k127_4603763_1 COG1013 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, beta subunit K00175 - 1.2.7.11,1.2.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001672 330.0
YYD1_k127_4623091_0 Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors K03814 - 2.4.1.129 0.0000000000000000000000000000000000000004829 158.0
YYD1_k127_4623091_1 - - - - 0.000000000000004511 78.0
YYD1_k127_4625408_0 LytB protein K03527 - 1.17.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 477.0
YYD1_k127_4625408_1 Glucose / Sorbosone dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005132 369.0
YYD1_k127_4625408_2 Protein of unknown function DUF72 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001434 300.0
YYD1_k127_4625408_3 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000125 239.0
YYD1_k127_4625408_4 membrane transporter protein K07090 - - 0.0000000000000000000003998 108.0
YYD1_k127_4625408_5 PAS modulated sigma54 specific transcriptional regulator, Fis family - - - 0.000008304 54.0
YYD1_k127_4625408_6 Bacterial regulatory proteins, tetR family K02167 - - 0.0008138 45.0
YYD1_k127_4634115_0 B12 binding domain K00548 - 2.1.1.13 0.0 1452.0
YYD1_k127_463484_0 Saccharopine dehydrogenase C-terminal domain K19064 - 1.4.1.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005036 398.0
YYD1_k127_463484_1 Thioredoxin - - - 0.000000000000000000000000000000002095 136.0
YYD1_k127_4638507_0 Beta-lactamase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002503 447.0
YYD1_k127_4638507_1 amine dehydrogenase activity - - - 0.00003851 56.0
YYD1_k127_4638507_2 Aminotransferase class-V K00817 - 2.6.1.9 0.0005948 42.0
YYD1_k127_4639007_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000143 369.0
YYD1_k127_4639007_1 Peptidase family M28 - - - 0.00000000000000000000000000000000000000000000000000000000000000001549 226.0
YYD1_k127_4639007_2 DinB superfamily - - - 0.000000253 61.0
YYD1_k127_4639007_3 DinB superfamily - - - 0.000001518 58.0
YYD1_k127_4664228_0 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001127 412.0
YYD1_k127_4664228_1 peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006714 314.0
YYD1_k127_4669010_0 Histone deacetylase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002598 274.0
YYD1_k127_4669010_1 amine dehydrogenase activity - - - 0.00000000000000000000000000000000000000000000000004389 188.0
YYD1_k127_4669010_2 - - - - 0.0000000000000000009633 89.0
YYD1_k127_4672453_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001421 284.0
YYD1_k127_4672453_1 LexA-binding, inner membrane-associated putative hydrolase K07038 - - 0.00000000000000000000000000000000000000000000003826 181.0
YYD1_k127_4678847_0 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 3.661e-210 668.0
YYD1_k127_4678847_1 Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome K02956 - - 0.0000000000000000000000000000000005274 132.0
YYD1_k127_4684470_0 acetyltransferase - - - 0.00000000000000000000000000000000000000000000000000000003675 207.0
YYD1_k127_4684470_1 alcohol dehydrogenase - - - 0.0000000000000000000000000000000000000000000005889 182.0
YYD1_k127_4690880_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009045 397.0
YYD1_k127_4690880_1 Phosphoribosyl transferase domain K00760 - 2.4.2.8 0.0000000000000000000000000000000000000000000000000000000000000000001111 234.0
YYD1_k127_4690880_2 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000004282 89.0
YYD1_k127_4707436_0 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006475 367.0
YYD1_k127_4707436_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000583 332.0
YYD1_k127_4707436_2 B3/4 domain K01890 - 6.1.1.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001395 292.0
YYD1_k127_4707436_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001537 243.0
YYD1_k127_4707436_4 hydrolase of the alpha beta-hydrolase fold K07020 - - 0.000000000000000000000000000000000000000000000000000000000000000005072 232.0
YYD1_k127_4707436_5 EXOIII K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000001021 173.0
YYD1_k127_4707436_6 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 - - 0.000000000000000000000000000000000000309 143.0
YYD1_k127_4707436_7 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000001813 72.0
YYD1_k127_4709037_0 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001991 279.0
YYD1_k127_4709037_1 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000000005717 130.0
YYD1_k127_4709037_2 Biotin-lipoyl like - - - 0.000000000000000000000006091 112.0
YYD1_k127_4713515_0 Bacterial protein of unknown function (DUF885) - - - 4.031e-194 622.0
YYD1_k127_4713515_1 Zinc-binding dehydrogenase K00344 - 1.6.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001912 344.0
YYD1_k127_4713515_2 domain protein - - - 0.00000000000000004957 86.0
YYD1_k127_4734642_0 amino acid activation for nonribosomal peptide biosynthetic process K05889,K12132 - 1.1.2.6,2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003779 331.0
YYD1_k127_4734642_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000178 289.0
YYD1_k127_4734642_2 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.000000000000000002226 87.0
YYD1_k127_4739928_0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000002186 238.0
YYD1_k127_4739928_1 DNA polymerase III, delta subunit K02341 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000006762 203.0
YYD1_k127_4739928_2 Belongs to the TPP enzyme family - - - 0.0000000000000000000000000000000000000000000000000000102 204.0
YYD1_k127_4739928_3 Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP) K03637 - 4.6.1.17 0.00000000000000000000000000000000000000000000000000006862 194.0
YYD1_k127_4739928_4 Transglycosylase SLT domain - - - 0.000000000000000000000000000000001812 143.0
YYD1_k127_4744647_0 Aminotransferase class-V K04487 - 2.8.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009767 357.0
YYD1_k127_4744647_1 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000000000000004885 199.0
YYD1_k127_4744647_2 Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 K00566 - 2.8.1.13 0.00000000000000000000000002253 109.0
YYD1_k127_4744775_0 UDP binding domain K13015 - 1.1.1.136 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009393 584.0
YYD1_k127_4744775_1 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001681 487.0
YYD1_k127_4744775_2 Belongs to the UDP-glucose GDP-mannose dehydrogenase family K00012 - 1.1.1.22 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004856 404.0
YYD1_k127_4744775_3 O-acyltransferase activity K13018 - 2.3.1.201 0.00000000000000000000000001641 109.0
YYD1_k127_4755076_0 esterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003862 540.0
YYD1_k127_4755076_1 cyclic nucleotide binding K12132,K20074 - 2.7.11.1,3.1.3.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002813 297.0
YYD1_k127_4755480_0 Oxidoreductase family, NAD-binding Rossmann fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007522 601.0
YYD1_k127_4755480_1 Elongation factor SelB, winged helix K03833 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006858 284.0
YYD1_k127_4755480_2 Involved in DNA repair and RecF pathway recombination K03584 GO:0005575,GO:0005618,GO:0005623,GO:0030312,GO:0044464,GO:0071944 - 0.00000000000006507 81.0
YYD1_k127_4755480_3 Nucleoside H+ symporter - - - 0.0000000000001911 83.0
YYD1_k127_4755480_4 Protein of unknown function (DUF295) - - - 0.0003987 44.0
YYD1_k127_4770889_0 4Fe-4S dicluster domain K00184 - - 1.056e-214 697.0
YYD1_k127_4789767_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313 592.0
YYD1_k127_4789767_1 COG0457 FOG TPR repeat - - - 0.000000000008215 75.0
YYD1_k127_4791324_0 Epoxide hydrolase N terminus - - - 2.079e-196 616.0
YYD1_k127_4791324_1 Winged helix DNA-binding domain - - - 0.00000000000000000000000308 104.0
YYD1_k127_4794070_0 succinyl-diaminopimelate desuccinylase activity - - - 4.452e-229 722.0
YYD1_k127_4815366_0 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002185 301.0
YYD1_k127_4815366_1 ATPases associated with a variety of cellular activities K10112 - - 0.0000000000000000000000000002764 123.0
YYD1_k127_4815366_2 Sigma-70, region 4 K03088 - - 0.000000000000000002116 93.0
YYD1_k127_4822066_0 Formate dehydrogenase alpha subunit K00123,K05299 - 1.17.1.10,1.17.1.9 8.493e-229 749.0
YYD1_k127_4822066_1 S-adenosylmethionine-dependent methyltransferase K06969 - 2.1.1.191 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001288 308.0
YYD1_k127_4822066_2 Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC) - - - 0.00000000000000000000000001165 120.0
YYD1_k127_4830342_0 ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity K06048 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000483 539.0
YYD1_k127_4830342_1 Evidence 4 Homologs of previously reported genes of - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001145 446.0
YYD1_k127_4830342_2 Peptidase C26 K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221 301.0
YYD1_k127_4836199_0 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002 392.0
YYD1_k127_4836199_1 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004012 353.0
YYD1_k127_4836199_2 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 304.0
YYD1_k127_4842266_0 Belongs to the GSP D family K02280 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001396 273.0
YYD1_k127_4842266_1 PFAM SAF domain K02279 - - 0.000000000000000000000000000000000000000000004888 174.0
YYD1_k127_4842266_2 oligosaccharyl transferase activity - - - 0.0000000000000000000000000000000000007241 154.0
YYD1_k127_4842266_3 peptidase A24A prepilin type IV K02278 - 3.4.23.43 0.0000000000004398 76.0
YYD1_k127_4842266_4 PFAM Flp Fap pilin component K02651 - - 0.0000005079 55.0
YYD1_k127_4842266_5 TadE-like protein - - - 0.0000005113 61.0
YYD1_k127_4852245_0 Domain of unknown function (DUF3471) K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007021 363.0
YYD1_k127_4852245_1 - - - - 0.000000000000005147 77.0
YYD1_k127_4852299_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003384 268.0
YYD1_k127_4852299_1 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000006916 220.0
YYD1_k127_4852299_2 COG4771 Outer membrane receptor for ferrienterochelin and colicins K02014,K16087,K16089 - - 0.00000000000000000000000001269 124.0
YYD1_k127_489861_0 Metal dependent phosphohydrolases with conserved 'HD' motif. K06885 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007228 421.0
YYD1_k127_489861_1 cytochrome c biogenesis protein K04084 - 1.8.1.8 0.000000000000000000000000000002066 139.0
YYD1_k127_4900278_0 Sortilin, neurotensin receptor 3, - - - 0.0 1051.0
YYD1_k127_4931654_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008589 577.0
YYD1_k127_4931654_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009939 492.0
YYD1_k127_4931654_10 4Fe-4S binding domain K11473 - - 0.00000000000000000000000000000000003201 144.0
YYD1_k127_4931654_11 TamB, inner membrane protein subunit of TAM complex K09800 - - 0.000000278 63.0
YYD1_k127_4931654_2 Binding-protein-dependent transport system inner membrane component K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001375 428.0
YYD1_k127_4931654_3 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004814 372.0
YYD1_k127_4931654_4 Surface antigen K07277 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007209 370.0
YYD1_k127_4931654_5 Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) K01735 - 4.2.3.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001767 305.0
YYD1_k127_4931654_6 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C K07259 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000001334 267.0
YYD1_k127_4931654_7 Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.0000000000000000000000000000000000000000000000000000000000004323 215.0
YYD1_k127_4931654_8 PFAM FAD binding domain K11472 - - 0.0000000000000000000000000000000000000000000000004209 191.0
YYD1_k127_4931654_9 ATP-dependent protease La (LON) substrate-binding domain K01338 - 3.4.21.53 0.0000000000000000000000000000000000000007348 156.0
YYD1_k127_4940436_0 cellulose binding - - - 0.0 1279.0
YYD1_k127_4940436_1 Phosphoribosyl transferase domain - - - 0.000000000000000000000000000000000000000000000000000000000006801 213.0
YYD1_k127_4944230_0 Sulfate permease family K03321 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 595.0
YYD1_k127_4944230_1 PFAM NADH Ubiquinone plastoquinone (complex I) K12137 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009755 453.0
YYD1_k127_4944230_2 PFAM NADH Ubiquinone plastoquinone (complex I) K12141 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001594 326.0
YYD1_k127_4944230_3 NADH dehydrogenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000007382 294.0
YYD1_k127_4944230_4 hydrogenase 4 membrane K12140 - - 0.00000000000000000000000000000000000000000000000000000000000614 213.0
YYD1_k127_4944230_5 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02806 - - 0.00000000000000000000000000000000000000000000000000002582 196.0
YYD1_k127_4944230_7 - - - - 0.000000000001138 70.0
YYD1_k127_4944489_0 with chaperone activity ATP-binding K03696 - - 5.403e-258 810.0
YYD1_k127_4944489_1 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001866 503.0
YYD1_k127_4944489_2 ATP:guanido phosphotransferase, C-terminal catalytic domain K19405 - 2.7.14.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002761 430.0
YYD1_k127_4944489_3 Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA K02836 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 426.0
YYD1_k127_4944489_4 MacB-like periplasmic core domain K09808 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 372.0
YYD1_k127_4944489_5 Part of the ABC transporter complex LolCDE involved in the translocation of K09810 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000006695 265.0
YYD1_k127_4944489_6 UvrB/uvrC motif K19411 - - 0.000000000000000000000000000000000000115 147.0
YYD1_k127_4944489_7 - - - - 0.0000000000000000000000000000002934 127.0
YYD1_k127_4944764_0 prohibitin homologues - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005669 302.0
YYD1_k127_4944764_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000003523 168.0
YYD1_k127_4944764_2 3-hydroxyacyl-CoA dehydrogenase K00074 - 1.1.1.157 0.000000000000000000000000000000005302 132.0
YYD1_k127_4944764_3 - - - - 0.0000000000000000000000000000000415 138.0
YYD1_k127_4949770_0 6-O-methylguanine DNA methyltransferase, DNA binding domain K10778 - 2.1.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 344.0
YYD1_k127_4949770_1 M61 glycyl aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000005307 256.0
YYD1_k127_4949770_2 tail specific protease K03797 - 3.4.21.102 0.0000000000000000000000000000000000000000001298 164.0
YYD1_k127_4949770_3 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.00000000000000000000000000000000000002767 149.0
YYD1_k127_4955095_0 Amino acid permease K03294 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 487.0
YYD1_k127_4955095_1 FCD - - - 0.000000000000000000000000000000003878 131.0
YYD1_k127_4955095_2 Belongs to the pseudouridine synthase RsuA family K06181 - 5.4.99.20 0.0000000000000008167 81.0
YYD1_k127_4968338_0 Oxidoreductase family, C-terminal alpha/beta domain K13020 - 1.1.1.335 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003903 533.0
YYD1_k127_4968338_1 MgsA AAA+ ATPase C terminal K07478 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001028 466.0
YYD1_k127_4968338_2 GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis K03665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 450.0
YYD1_k127_4968338_3 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000003307 186.0
YYD1_k127_4973192_0 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002238 439.0
YYD1_k127_4973192_1 Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003642 252.0
YYD1_k127_4973192_2 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 0.00000000000000000000004721 101.0
YYD1_k127_4979428_0 membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001517 283.0
YYD1_k127_4979428_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002225 267.0
YYD1_k127_5011592_0 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001933 271.0
YYD1_k127_5011592_1 Psort location Cytoplasmic, score K00945 - 2.7.4.25 0.0000000000000000000001724 103.0
YYD1_k127_5024828_0 Cell wall-associated hydrolase (invasion-associated protein) K21471 - - 0.00000000000000000000001716 114.0
YYD1_k127_5070454_0 phosphatidate phosphatase activity - - - 0.00000000000000000000000000000000000000002256 168.0
YYD1_k127_5070454_1 Sodium:dicarboxylate symporter family - - - 0.000000000001281 69.0
YYD1_k127_5070454_2 AAA-like domain - - - 0.0002915 49.0
YYD1_k127_507442_0 WD40-like Beta Propeller Repeat - - - 2.971e-203 665.0
YYD1_k127_507442_1 arylsulfatase A - - - 0.0000000000000000000000000000001009 130.0
YYD1_k127_5077351_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008941 351.0
YYD1_k127_5077351_1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K00057 - 1.1.1.94 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001152 334.0
YYD1_k127_5077351_2 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315 307.0
YYD1_k127_5077351_3 SNARE associated Golgi protein K03975 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006566 271.0
YYD1_k127_5077351_4 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000000000003357 244.0
YYD1_k127_5077351_5 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.000000000000000000000000000000000000002059 165.0
YYD1_k127_5077351_6 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000000000004601 155.0
YYD1_k127_5077351_7 acylphosphatase activity K01512 - 3.6.1.7 0.000000000000004912 80.0
YYD1_k127_5077488_0 PFAM Peptidase S10, serine carboxypeptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002745 561.0
YYD1_k127_5077488_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000004415 124.0
YYD1_k127_5118227_0 PAS domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001241 349.0
YYD1_k127_5118227_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009007 334.0
YYD1_k127_5118227_2 Transcriptional regulatory protein, C terminal K02483,K07665 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004399 311.0
YYD1_k127_5118227_3 MotA/TolQ/ExbB proton channel family K03562 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001508 278.0
YYD1_k127_5118227_4 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.00000000000000000000000000000000000000000001745 170.0
YYD1_k127_5118227_5 Biopolymer transport protein ExbD/TolR K03560 - - 0.0000000000000000000000000000000007669 135.0
YYD1_k127_5118227_6 Biopolymer transport protein ExbD/TolR K03560 - - 0.0001147 45.0
YYD1_k127_5129956_0 Putative serine dehydratase domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004251 436.0
YYD1_k127_5129956_1 PFAM D-aminoacylase, C-terminal region K06015 - 3.5.1.81 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008761 409.0
YYD1_k127_5130296_0 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 5.927e-303 939.0
YYD1_k127_5130296_1 EVE domain - - - 0.00000000000000000000000000000006879 129.0
YYD1_k127_5158809_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000006143 154.0
YYD1_k127_5158809_1 Putative molybdenum carrier - - - 0.000000000000000000000000000000001765 136.0
YYD1_k127_5158809_2 Bacterial Ig-like domain 2 - - - 0.00000000000000000000000000000009639 140.0
YYD1_k127_5158809_3 phosphorelay signal transduction system K12132 - 2.7.11.1 0.0000000000000000000000000000704 122.0
YYD1_k127_5169328_0 Penicillin amidase K01434 - 3.5.1.11 4.916e-262 817.0
YYD1_k127_5169328_1 - - - - 0.00004456 48.0
YYD1_k127_5233032_0 thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence K02945 - - 4.227e-274 853.0
YYD1_k127_5233032_1 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 GO:0003674,GO:0003824,GO:0004127,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006573,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0034654,GO:0040007,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605 2.7.4.25 0.00000000000000000000000000004803 122.0
YYD1_k127_5233032_2 Belongs to the peptidase M24B family K01271 - 3.4.13.9 0.000002141 53.0
YYD1_k127_5246450_0 PFAM peptidase U62 modulator of DNA gyrase K03568 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000000000000000000000000000000000000001144 189.0
YYD1_k127_5246450_1 Modulator of DNA gyrase K03592 - - 0.00000000000003012 85.0
YYD1_k127_5246450_2 4-vinyl reductase, 4VR K07013 - - 0.0000003119 59.0
YYD1_k127_5260632_0 Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate K03526 - 1.17.7.1,1.17.7.3 2.349e-195 616.0
YYD1_k127_5260632_1 PFAM phosphoesterase, PA-phosphatase related - - - 0.0000000000000000000000002578 115.0
YYD1_k127_5260632_2 Cytochrome C biogenesis protein transmembrane region K04084 - 1.8.1.8 0.0000000000000009893 78.0
YYD1_k127_5289702_0 Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate K00761 - 2.4.2.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002612 302.0
YYD1_k127_5289702_1 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 - - 0.0000000000000000000000000000000000000000004025 162.0
YYD1_k127_5289702_2 4-amino-4-deoxy-L-arabinose transferase activity K14340 - - 0.00000000000000000008993 103.0
YYD1_k127_5289702_3 Resolvase - - - 0.0003156 48.0
YYD1_k127_5296557_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002418 545.0
YYD1_k127_5296557_1 alpha/beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002495 433.0
YYD1_k127_5296557_2 CGNR zinc finger - - - 0.000000000000000000000000000000000004391 145.0
YYD1_k127_5301381_0 COG1014 Pyruvate ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductases, gamma subunit K00174 - 1.2.7.11,1.2.7.3 1.76e-251 790.0
YYD1_k127_5301381_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002651 439.0
YYD1_k127_5324301_0 MacB-like periplasmic core domain K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 413.0
YYD1_k127_5324301_1 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003477 345.0
YYD1_k127_5324301_2 GlcNAc-PI de-N-acetylase K01463 - - 0.00000000000000000000000000000000000000000000008721 173.0
YYD1_k127_5364241_0 Amidohydrolase family K01466 - 3.5.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 476.0
YYD1_k127_5364241_1 Belongs to the allantoicase family K01477 - 3.5.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 397.0
YYD1_k127_5364241_2 xanthine dehydrogenase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 345.0
YYD1_k127_5364241_3 CO dehydrogenase flavoprotein C-terminal domain K13479 - 1.17.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002148 335.0
YYD1_k127_5364241_4 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000006347 171.0
YYD1_k127_5364241_5 allantoin biosynthetic process K01477,K16840 - 3.5.3.4,4.1.1.97 0.00000000000000000000000000001822 131.0
YYD1_k127_5364241_6 Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily K07127 - 3.5.2.17 0.000000000000000000000004222 106.0
YYD1_k127_5385533_0 Cys/Met metabolism PLP-dependent enzyme K01758 - 4.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005796 493.0
YYD1_k127_5385533_1 HD domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004863 322.0
YYD1_k127_5385533_2 Peptidase family M48 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003455 316.0
YYD1_k127_5385533_3 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01840 - 5.4.2.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 295.0
YYD1_k127_5385533_4 Belongs to the GARS family K01945 - 6.3.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000004382 269.0
YYD1_k127_5457485_0 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03072,K12257 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002388 354.0
YYD1_k127_5457485_1 Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA K03074 - - 0.00000000002524 76.0
YYD1_k127_5491626_0 Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 459.0
YYD1_k127_5491626_1 Virulence factor BrkB K07058 - - 0.0000000000000000000000000000959 127.0
YYD1_k127_5495821_0 Domain of unknown function (DUF5117) - - - 4.423e-257 820.0
YYD1_k127_5495821_1 Peptidase family M28 K06016 - 3.5.1.6,3.5.1.87 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003798 487.0
YYD1_k127_5495821_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000001238 235.0
YYD1_k127_5495821_3 DinB family - - - 0.00000000000000000000000000000000000000000000000000000000047 206.0
YYD1_k127_5495821_4 PFAM aminotransferase class I and II K10907 - - 0.00000000000000000003809 92.0
YYD1_k127_5495821_5 D-Ala-D-Ala carboxypeptidase 3 (S13) family - - - 0.00000000003178 76.0
YYD1_k127_550441_0 Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B K02274 - 1.9.3.1 2.569e-213 677.0
YYD1_k127_550441_1 aerobic electron transport chain K00425,K08738 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002557 564.0
YYD1_k127_550441_10 - - - - 0.00000000000003162 83.0
YYD1_k127_550441_12 PFAM Cytochrome c, class I - - - 0.000006373 49.0
YYD1_k127_550441_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005881 325.0
YYD1_k127_550441_3 Cytochrome c - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001964 254.0
YYD1_k127_550441_4 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016020,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044464,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000000000000000000000000000000000002735 239.0
YYD1_k127_550441_5 Polysaccharide lyase family 4, domain II - - - 0.000000000000000000000000000000000000000000000000000000000001829 218.0
YYD1_k127_550441_6 Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000738 194.0
YYD1_k127_550441_7 Cytochrome c oxidase subunit III K02276,K02299 GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044464,GO:0071944 1.9.3.1 0.0000000000000000000000000000000000000000006267 169.0
YYD1_k127_550441_8 - - - - 0.00000000000000000000003746 106.0
YYD1_k127_550441_9 Cytochrome c - - - 0.000000000000000001461 95.0
YYD1_k127_551389_0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K00336 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003698 549.0
YYD1_k127_551389_1 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 537.0
YYD1_k127_551389_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004903 427.0
YYD1_k127_551389_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000001158 276.0
YYD1_k127_551389_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.0000000000000000000000000000000000003124 141.0
YYD1_k127_551389_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 - 1.6.5.3 0.000000000000000000000000002793 124.0
YYD1_k127_551389_6 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 - 1.6.5.3 0.000000000000000000000001745 115.0
YYD1_k127_5515770_0 Sodium:dicarboxylate symporter family K03309 - - 0.000000000000000000000000000000000000000000000000000000000000000001779 237.0
YYD1_k127_5515770_1 transport - - - 0.000000000000000000000000001647 122.0
YYD1_k127_5526875_0 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.0000000000000000000000000000000000000008654 154.0
YYD1_k127_5526875_1 - - - - 0.000000000000002261 87.0
YYD1_k127_5526875_2 Double zinc ribbon - - - 0.000006862 57.0
YYD1_k127_5526875_3 Cytochrome C assembly protein K02198,K04016 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 0.00005664 49.0
YYD1_k127_5552643_0 glyoxalase bleomycin resistance protein dioxygenase K15975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002641 452.0
YYD1_k127_5552643_1 - - - - 0.0000000000000000000000000000000000000000000000000000000009512 208.0
YYD1_k127_5552643_2 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.0000004734 52.0
YYD1_k127_5553529_0 Domain of unknown function (DUF3471) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 469.0
YYD1_k127_5553529_1 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004823 439.0
YYD1_k127_5553529_2 Domain of unknown function (DUF3471) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008425 397.0
YYD1_k127_5561850_0 Glycosyl transferase 4-like K00754 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 422.0
YYD1_k127_5561850_1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002504 298.0
YYD1_k127_5561850_2 Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) K00791 - 2.5.1.75 0.000000000000000000000000000000000000000000000000000000000000000005472 237.0
YYD1_k127_5561850_3 Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate K04040,K20616 - 2.5.1.133,2.5.1.62 0.00000000000000000000000000000000000000000000000000000000000000616 229.0
YYD1_k127_5561850_4 Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin K06153 - 3.6.1.27 0.000000000000000000000000000000000000000000007334 172.0
YYD1_k127_5561850_5 Biotin/lipoate A/B protein ligase family K03524 - 6.3.4.15 0.00000000000000000000000000002605 126.0
YYD1_k127_5568728_0 NAD(P)H-binding K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001834 452.0
YYD1_k127_5568728_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008566 346.0
YYD1_k127_5570793_0 AAA domain (dynein-related subfamily) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004792 366.0
YYD1_k127_5570793_1 SMART von Willebrand factor, type A K07161 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003302 313.0
YYD1_k127_5570793_2 glyoxalase III activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002801 270.0
YYD1_k127_5570793_3 DNA-binding transcription factor activity - - - 0.00000000000000000000000000000000001573 138.0
YYD1_k127_5570793_4 oxidoreductase activity, acting on CH-OH group of donors K09386 - - 0.00000000000000000000000002574 113.0
YYD1_k127_5570793_5 Peptidoglycan-binding domain 1 protein - - - 0.0000000000000000000000008729 112.0
YYD1_k127_5570793_6 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.00000000000000000000002943 104.0
YYD1_k127_5578663_0 Cytochrome c K07243 - - 0.0000000000000000000000000000000000000000000000000000000000000000001322 246.0
YYD1_k127_5578663_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.00000000000000000000000000000000000000000000000000000000001784 216.0
YYD1_k127_5578663_2 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 - 2.3.1.234 0.0000000000376 64.0
YYD1_k127_5579020_0 Putative esterase K07017 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 305.0
YYD1_k127_5579020_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000445 89.0
YYD1_k127_5579020_2 - - - - 0.0000000001392 72.0
YYD1_k127_5579020_3 - - - - 0.000000000557 70.0
YYD1_k127_5594104_0 Amidohydrolase K07045 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 351.0
YYD1_k127_5594104_1 Aminotransferase class-III K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000009045 293.0
YYD1_k127_5594104_2 GHMP kinase - - - 0.00000000000000000000000000000000000000000000000000000000005707 217.0
YYD1_k127_5594104_3 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000001186 214.0
YYD1_k127_5614191_0 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001334 606.0
YYD1_k127_5614191_1 Amidase K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000001166 258.0
YYD1_k127_5614191_2 ketosteroid isomerase - - - 0.00000000000000000000000000000000000001183 149.0
YYD1_k127_5614191_3 WD40 domain protein beta Propeller K03641 - - 0.0000000000000000000000000003172 126.0
YYD1_k127_5614191_4 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 GO:0000096,GO:0003674,GO:0003824,GO:0004013,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009987,GO:0016787,GO:0016801,GO:0016802,GO:0017144,GO:0019752,GO:0033353,GO:0034641,GO:0042278,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046128,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901605,GO:1901657 3.3.1.1 0.0000000000000000304 81.0
YYD1_k127_5637444_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001264 420.0
YYD1_k127_5637444_1 Protein of unknown function DUF58 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000005313 246.0
YYD1_k127_5637444_2 Belongs to the pseudouridine synthase RsuA family K06183 - 5.4.99.19 0.00000006569 55.0
YYD1_k127_5691106_0 FAD dependent oxidoreductase K00285,K03153 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0036094,GO:0042364,GO:0042723,GO:0042724,GO:0043167,GO:0043168,GO:0043436,GO:0043799,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0071949,GO:0072527,GO:0072528,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.4.3.19,1.4.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001337 377.0
YYD1_k127_5691106_1 Protein kinase domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000002256 226.0
YYD1_k127_5691106_2 transmembrane transporter activity K03535 - - 0.00000000000000000000000000000000000000000003857 179.0
YYD1_k127_5691106_3 PFAM peptidase M19 renal dipeptidase K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000139 173.0
YYD1_k127_5703563_0 ligase activity, forming nitrogen-metal bonds K02230 - 6.6.1.2 0.0 1298.0
YYD1_k127_5703563_1 DoxX-like family - - - 0.0000000000000000000000000000000003807 135.0
YYD1_k127_5703563_2 Glycogen debranching enzyme N terminal - - - 0.000000000002052 70.0
YYD1_k127_5745594_0 DNA polymerase beta thumb K02347 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002101 614.0
YYD1_k127_5745594_1 Aminotransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002519 432.0
YYD1_k127_5745594_2 O-methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002155 275.0
YYD1_k127_5745594_3 - - - - 0.000000000000000000000000000000000000000000000000000002455 196.0
YYD1_k127_5745594_4 Putative lumazine-binding - - - 0.0000000000000000000000000000000000002213 146.0
YYD1_k127_5745594_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.00000000000000000000000006583 115.0
YYD1_k127_5745594_7 Uncharacterized conserved protein (DUF2277) - - - 0.00000000000000003206 83.0
YYD1_k127_5745594_8 Uracil DNA glycosylase superfamily K21929 - 3.2.2.27 0.00000000001482 66.0
YYD1_k127_5790814_0 Required for chromosome condensation and partitioning K03529 - - 1.236e-201 670.0
YYD1_k127_5790814_1 Sporulation related domain - - - 0.000008002 54.0
YYD1_k127_5792576_0 Belongs to the transketolase family K00615 - 2.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008559 599.0
YYD1_k127_5792576_1 efflux transmembrane transporter activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077 502.0
YYD1_k127_5792576_2 endonuclease activity - - - 0.0000000000000000000000000000000003639 139.0
YYD1_k127_5798218_0 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves K06024 - - 0.000000000000000000000000000000000000000000000000000000000000000002062 231.0
YYD1_k127_5798218_1 S4 RNA-binding domain K06178 - 5.4.99.22 0.00000000000000000000000000000000000000000000000000000000009871 214.0
YYD1_k127_5798218_2 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000001748 124.0
YYD1_k127_5798218_3 Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves K05896 - - 0.0001744 49.0
YYD1_k127_5801267_0 Cytochrome c-type biogenesis protein CcmF C-terminal K02198 - - 3.444e-247 780.0
YYD1_k127_5801267_1 subunit of a heme lyase K02200 - - 0.00000000000000000000001441 115.0
YYD1_k127_5801267_2 - - - - 0.00000000000000000000005153 105.0
YYD1_k127_5801267_3 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.000002897 49.0
YYD1_k127_5807258_0 Zinc carboxypeptidase K14054 - - 0.0 1223.0
YYD1_k127_5807258_2 D-aminopeptidase - - - 0.000001994 54.0
YYD1_k127_5809372_0 Polyphosphate kinase 2 (PPK2) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000207 387.0
YYD1_k127_5809372_1 Pfam:UPF0118 - - - 0.0000000000000000000000000000000000000000000000000000000001253 214.0
YYD1_k127_5812604_0 Carbohydrate phosphorylase K00688 - 2.4.1.1 2.085e-296 925.0
YYD1_k127_5812604_1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains - - - 3.386e-211 664.0
YYD1_k127_5812604_2 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 0.00000000000001927 77.0
YYD1_k127_5816144_0 CarboxypepD_reg-like domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009692 567.0
YYD1_k127_5816144_1 Sodium:alanine symporter family K03310 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005478 514.0
YYD1_k127_5816144_2 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 - 2.5.1.141 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000111 283.0
YYD1_k127_5861578_0 Dehydrogenase E1 component K00164,K01616 - 1.2.4.2,4.1.1.71 0.000000000000000000000000000000000000000000000000000000000000000000000000000001343 276.0
YYD1_k127_5861578_1 Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family K00111 - 1.1.5.3 0.00000000000000000000000000000000000174 145.0
YYD1_k127_5870827_0 Amidohydrolase family - - - 2.78e-313 989.0
YYD1_k127_5870827_1 Alkylphosphonate utilization operon protein PhnA K06193 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.000000000000004192 74.0
YYD1_k127_5885243_0 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009004 451.0
YYD1_k127_5898519_0 ABC-type spermidine putrescine transport system, permease component I K11071 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000041 305.0
YYD1_k127_5898519_1 PFAM binding-protein-dependent transport systems inner membrane component K11070 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006983 254.0
YYD1_k127_5898519_2 Bacterial extracellular solute-binding protein K11069 - - 0.00000000000000000000003174 107.0
YYD1_k127_5898519_3 Belongs to the ABC transporter superfamily K11072 - 3.6.3.31 0.0000000001384 66.0
YYD1_k127_5900949_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002169 391.0
YYD1_k127_5900949_1 alcohol dehydrogenase - - - 0.00000001136 61.0
YYD1_k127_5900949_2 PFAM Acetyltransferase (GNAT) family - - - 0.0009765 48.0
YYD1_k127_590995_0 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.00000000000000000000000000000000000000000000000000000000000002352 220.0
YYD1_k127_590995_1 Domain of unknown function (DUF1732) - - - 0.00000000000000000000000000000000000000000000000000001357 199.0
YYD1_k127_5958191_0 Putative peptidoglycan binding domain K21470 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 407.0
YYD1_k127_5958191_1 Beta-lactamase enzyme family K17836 - 3.5.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001666 301.0
YYD1_k127_5958191_2 Glutathione synthase Ribosomal protein S6 modification enzyme (Glutaminyl transferase) K01955 - 6.3.5.5 0.000000000000000000000000000000000000000000000000000000000000000000000009558 256.0
YYD1_k127_5958191_3 PFAM Kelch repeat type 1 K03529 - - 0.00000000000000000000000000000000000000000000000000004004 199.0
YYD1_k127_5958191_4 Bacterial protein of unknown function (DUF882) - - - 0.000000000000000000002581 93.0
YYD1_k127_5958191_5 Belongs to the universal stress protein A family - - - 0.00000000000004863 83.0
YYD1_k127_5958191_6 - - - - 0.000007389 48.0
YYD1_k127_5967511_0 Catalyzes the NADPH-dependent reduction of LysW - aminoadipate 6-phosphate to yield LysW -aminoadipate 6- semialdehyde K05829 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 422.0
YYD1_k127_5967511_1 aminopeptidase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002941 389.0
YYD1_k127_5967511_2 Belongs to the RimK family K05827,K05844,K14940,K18310 - 6.3.1.17,6.3.2.32,6.3.2.41,6.3.2.43 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000761 372.0
YYD1_k127_5967511_3 Belongs to the acetylglutamate kinase family. LysZ subfamily K05828 GO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004301 327.0
YYD1_k127_5967511_4 lysine biosynthesis protein LysW K05826 - - 0.0000000000003868 70.0
YYD1_k127_5967511_5 Mannose-6-phosphate isomerase K00971,K16011 - 2.7.7.13,5.3.1.8 0.00000000001245 66.0
YYD1_k127_5967511_6 Catalyzes the transfer of the amino group of L-glutamate to LysW -aminoadipate 6-semialdehyde, generating LysW -gamma-L- lysine K05830 - - 0.00000000461 58.0
YYD1_k127_5969405_0 Transport of potassium into the cell K03549 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015318,GO:0015672,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098655,GO:0098660,GO:0098662 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005826 473.0
YYD1_k127_5969405_1 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000194 245.0
YYD1_k127_597389_0 Hsp70 protein K03569 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007765 593.0
YYD1_k127_597389_1 Alanine dehydrogenase/PNT, N-terminal domain K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114 539.0
YYD1_k127_597389_2 Penicillin-binding Protein dimerisation domain K05515 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006965 553.0
YYD1_k127_597389_3 Cell cycle protein K05837 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000794 436.0
YYD1_k127_597389_4 Insulinase (Peptidase family M16) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005965 396.0
YYD1_k127_597389_5 Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction K00962 - 2.7.7.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004358 327.0
YYD1_k127_597389_6 This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA K01520 - 3.6.1.23 0.000000000000000000000000000000000000000000000000003397 191.0
YYD1_k127_597389_7 rod shape-determining protein MreC K03570 - - 0.0000000000000000000000000000000000003623 151.0
YYD1_k127_597389_8 rod shape-determining protein MreD K03571 - - 0.000000000000000000008751 99.0
YYD1_k127_597389_9 Belongs to the peptidase M16 family - GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00002354 48.0
YYD1_k127_5975230_0 Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA K01610 - 4.1.1.49 1.082e-221 698.0
YYD1_k127_5975230_1 Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin K01151 - 3.1.21.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 291.0
YYD1_k127_5975230_2 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000006624 77.0
YYD1_k127_6039783_0 - - - - 0.00000000000000000000000000000000000004457 154.0
YYD1_k127_6039783_1 PFAM peptidase S1 and S6, chymotrypsin Hap - - - 0.000000000000000000000000000001411 124.0
YYD1_k127_6039783_2 Bacterial transcriptional activator domain K12132 - 2.7.11.1 0.000000000000000000000000318 109.0
YYD1_k127_6039783_3 WD40-like Beta Propeller Repeat - - - 0.000000004952 67.0
YYD1_k127_6039967_0 involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006067 451.0
YYD1_k127_6039967_1 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes K03118 - - 0.000000000000000000000000000000000000000000001946 190.0
YYD1_k127_6039967_2 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000000000000000000000000000000000004584 166.0
YYD1_k127_6039967_3 Belongs to the ompA family K03640 - - 0.00000000000000000000000000001774 126.0
YYD1_k127_6039967_4 Outer membrane lipoprotein - - - 0.0000000000000000000000000000608 130.0
YYD1_k127_6048618_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000006304 301.0
YYD1_k127_6048618_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.0000000000000000000000000000000000000000000000000000000000000203 230.0
YYD1_k127_6048618_2 impB/mucB/samB family K02346 - 2.7.7.7 0.00000000000000000000000000000000000000000000004868 186.0
YYD1_k127_6064860_0 FeoA - - - 2.724e-297 929.0
YYD1_k127_6064860_1 DNA restriction-modification system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004542 452.0
YYD1_k127_6064860_10 Uncharacterized ACR, COG1993 K06199,K09137 - - 0.000000000000000000000000000000000472 135.0
YYD1_k127_6064860_11 SNF2 family N-terminal domain - - - 0.0000000000000000000000000000008912 141.0
YYD1_k127_6064860_12 - - - - 0.0000000000000000000000306 104.0
YYD1_k127_6064860_13 Regulatory protein, FmdB family - - - 0.00000000002173 66.0
YYD1_k127_6064860_14 MobA-like NTP transferase domain K07141 - 2.7.7.76 0.00001299 56.0
YYD1_k127_6064860_2 Putative esterase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002348 352.0
YYD1_k127_6064860_3 Glycosyl transferase family 21 K00721 - 2.4.1.83 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002763 284.0
YYD1_k127_6064860_4 iron dependent repressor K03709 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002994 273.0
YYD1_k127_6064860_5 microcin C7 resistance K01297 - 3.4.17.13 0.00000000000000000000000000000000000000000000000000000000000000000000000001259 262.0
YYD1_k127_6064860_6 HAD-hyrolase-like K06019 - 3.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000004491 229.0
YYD1_k127_6064860_7 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000001058 186.0
YYD1_k127_6064860_8 Important for reducing fluoride concentration in the cell, thus reducing its toxicity K06199 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008509,GO:0015075,GO:0015103,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656,GO:0098660,GO:0098661,GO:1903424,GO:1903425 - 0.00000000000000000000000000000000000000009613 154.0
YYD1_k127_6064860_9 NUDIX domain - - - 0.0000000000000000000000000000000001024 142.0
YYD1_k127_6066488_0 Polysulphide reductase, NrfD K00185 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003129 540.0
YYD1_k127_6066488_1 Protein of unknown function (DUF3341) - - - 0.000000000000000000000000000002142 128.0
YYD1_k127_6066488_2 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000007044 105.0
YYD1_k127_6066488_3 4Fe-4S dicluster domain K00184 - - 0.000000000000000000002146 97.0
YYD1_k127_6066488_4 Amino acid kinase family - - - 0.00000009992 56.0
YYD1_k127_6066488_5 Pfam Polysulphide reductase, NrfD - - - 0.0002545 51.0
YYD1_k127_6073239_0 Malate synthase K01638 - 2.3.3.9 1.027e-238 749.0
YYD1_k127_6073239_1 Isocitrate lyase family K01637 - 4.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000164 623.0
YYD1_k127_6073239_2 His Kinase A (phosphoacceptor) domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 469.0
YYD1_k127_6073239_3 Pfam:DUF955 K07110 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007162 462.0
YYD1_k127_6073239_4 TIGRFAM Phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001096 274.0
YYD1_k127_6073239_5 SWI complex, BAF60b domains - - - 0.00000000000000000000000000002181 121.0
YYD1_k127_6073239_6 - - - - 0.00007754 53.0
YYD1_k127_6073405_0 May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine K01251 - 3.3.1.1 2.964e-259 808.0
YYD1_k127_6073405_1 helix_turn_helix, Arsenical Resistance Operon Repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000275 302.0
YYD1_k127_6077275_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002197 411.0
YYD1_k127_6077275_1 Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria K00979 - 2.7.7.38 0.000000000000000000000000000000000000000000000000000000000000000001755 235.0
YYD1_k127_6081408_0 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001274 430.0
YYD1_k127_6081408_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006783 359.0
YYD1_k127_6081408_2 Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes - - - 0.0000000003071 61.0
YYD1_k127_6081408_3 - - - - 0.000000000452 72.0
YYD1_k127_6081408_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005,K13888 - - 0.0000003572 56.0
YYD1_k127_6087515_0 Tetratricopeptide repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007559 400.0
YYD1_k127_6087515_1 Domain of unknown function (DUF4388) - - - 0.000000000000000000000000000003363 139.0
YYD1_k127_6087515_2 PspC domain K03973 - - 0.0000000000001284 72.0
YYD1_k127_6095945_0 ABC1 family K03688 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004063 556.0
YYD1_k127_6095945_1 Transglycosylase K05365,K05366 - 2.4.1.129,3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003431 427.0
YYD1_k127_6095945_2 Phosphoadenosine phosphosulfate reductase family K00957 - 2.7.7.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003826 355.0
YYD1_k127_6095945_3 Alpha beta hydrolase K00433 - 1.11.1.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001367 301.0
YYD1_k127_6095945_4 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004056 265.0
YYD1_k127_6095945_5 SnoaL-like domain - - - 0.000000000000000000000000000000003506 136.0
YYD1_k127_6095945_7 Divergent 4Fe-4S mono-cluster - - - 0.0000000000000005123 80.0
YYD1_k127_6097857_0 COG0433 Predicted ATPase K06915 - - 1.328e-248 789.0
YYD1_k127_6097857_1 AMP-binding enzyme K01897 - 6.2.1.3 3.573e-195 627.0
YYD1_k127_6097857_10 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000005829 177.0
YYD1_k127_6097857_11 COGs COG2380 conserved - - - 0.000000000000000000000000000001266 128.0
YYD1_k127_6097857_12 - - - - 0.00000000000007724 79.0
YYD1_k127_6097857_13 PFAM Ig domain protein, group 2 domain protein - - - 0.00001448 57.0
YYD1_k127_6097857_2 AAA domain K03546 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004233 516.0
YYD1_k127_6097857_3 Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005544 333.0
YYD1_k127_6097857_4 GTP cyclohydrolase I K01495 - 3.5.4.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002939 272.0
YYD1_k127_6097857_5 KR domain - - - 0.0000000000000000000000000000000000000000000000000000000000000002336 228.0
YYD1_k127_6097857_6 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.0000000000000000000000000000000000000000000000000000009405 197.0
YYD1_k127_6097857_7 6-pyruvoyl tetrahydropterin synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000001893 184.0
YYD1_k127_6097857_8 Phosphoribosyl transferase domain K07101 - - 0.0000000000000000000000000000000000000000000000004479 180.0
YYD1_k127_6097857_9 Calcineurin-like phosphoesterase superfamily domain K03547 - - 0.0000000000000000000000000000000000000000000000287 177.0
YYD1_k127_6105382_0 Proto-chlorophyllide reductase 57 kD subunit - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008645 358.0
YYD1_k127_6105382_1 rubredoxin K22405 - 1.6.3.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000009329 309.0
YYD1_k127_6105382_2 protein tyrosine kinase activity K03593 - - 0.0000000000000000000000000000000000000000000000000000001724 209.0
YYD1_k127_6105382_3 Proto-chlorophyllide reductase 57 kd subunit - - - 0.000000000000000000002553 99.0
YYD1_k127_6105382_4 4Fe-4S single cluster domain of Ferredoxin I - - - 0.00000000001291 73.0
YYD1_k127_6115331_0 Belongs to the HpcH HpaI aldolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001458 486.0
YYD1_k127_6123842_0 Protein of unknown function (DUF3011) - - - 0.00000000000000000000000000000000000000000000000000000002047 209.0
YYD1_k127_6123842_1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K06996 - - 0.000000000000000000000000000000003092 132.0
YYD1_k127_612467_0 Sulfite exporter TauE/SafE K07090 - - 0.000000000000000000000000000000000000000000000000000000000000001642 224.0
YYD1_k127_612467_1 - - - - 0.00000000000000000000000000000000000000000000000000006121 201.0
YYD1_k127_612467_2 Pyridine nucleotide-disulphide oxidoreductase K05297 - 1.18.1.1 0.000000000000000000000000000000000000000000001909 177.0
YYD1_k127_6129549_0 Adenylylsulphate kinase K00955 - 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001506 458.0
YYD1_k127_6129549_1 Phosphoadenosine phosphosulfate reductase family K00957 - 2.7.7.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009837 309.0
YYD1_k127_6129549_2 adenylylsulfate kinase activity K00860,K00955 GO:0003674,GO:0003824,GO:0004020,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0044237 2.7.1.25,2.7.7.4 0.00000000000000000000000000000000000000000000000000000005134 217.0
YYD1_k127_6134454_0 Fatty acid desaturase K10255 - 1.14.19.23,1.14.19.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001714 354.0
YYD1_k127_6134454_1 Elongation factor G, domain IV K02355 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001374 317.0
YYD1_k127_6134899_0 Phosphomethylpyrimidine kinase K00941 - 2.7.1.49,2.7.4.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005133 284.0
YYD1_k127_6134899_1 Phosphorylase superfamily K00772,K03783 - 2.4.2.1,2.4.2.28 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001086 274.0
YYD1_k127_6134899_2 Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000000000002794 214.0
YYD1_k127_6134899_3 Zn peptidase - - - 0.000000000000000000000000000000000000000000000000000000009419 213.0
YYD1_k127_6134899_4 RNA 2'-O ribose methyltransferase substrate binding K03437 - - 0.0000000000000000000000000000000000000000000000000004818 193.0
YYD1_k127_6134899_5 Na dependent nucleoside transporter K03317 - - 0.00000000000000000002849 91.0
YYD1_k127_6141220_0 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 423.0
YYD1_k127_6141220_1 response regulator - - - 0.0000000000000000000000000000000000000000000000000000002828 198.0
YYD1_k127_6141220_2 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000001579 87.0
YYD1_k127_6141220_3 - - - - 0.000000000007454 73.0
YYD1_k127_6141220_4 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.0000002405 55.0
YYD1_k127_6148438_0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 526.0
YYD1_k127_6148438_1 NADH ubiquinone oxidoreductase, 20 Kd subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000006118 273.0
YYD1_k127_6148438_2 Proton-conducting membrane transporter K12141 - - 0.00000000000000000000000000000000000000000001122 168.0
YYD1_k127_6148438_3 LVIVD repeat - - - 0.000000000000000000008281 91.0
YYD1_k127_6160692_0 Amidohydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001237 345.0
YYD1_k127_6160692_1 Putative bacterial sensory transduction regulator - - - 0.000000000000000001716 92.0
YYD1_k127_6160692_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.00000000000003096 73.0
YYD1_k127_6162474_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000345 329.0
YYD1_k127_6162474_1 Outer membrane efflux protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007485 283.0
YYD1_k127_6166474_0 Sodium:solute symporter family - - - 2.917e-221 700.0
YYD1_k127_6166474_1 Putative RNA methylase family UPF0020 K07444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 330.0
YYD1_k127_6166474_2 Belongs to the GHMP kinase family. GalK subfamily K00849 - 2.7.1.6 0.000000000000000000000000000000000000000000000000000000000000001565 234.0
YYD1_k127_6166474_3 MobA-like NTP transferase domain - - - 0.00000000000000000001121 98.0
YYD1_k127_6184194_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007639 330.0
YYD1_k127_6184194_1 Acetamidase formamidase - - - 0.00000000005062 71.0
YYD1_k127_618731_0 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002973 331.0
YYD1_k127_618731_1 Belongs to the UPF0271 (lamB) family K07160 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000008869 273.0
YYD1_k127_618731_10 Allophanate hydrolase subunit 2 K01457 - 3.5.1.54 0.000718 48.0
YYD1_k127_618731_2 Bacterial regulatory protein, Fis family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001839 267.0
YYD1_k127_618731_3 COG1606 ATP-utilizing enzymes of the PP-loop superfamily K06864 - - 0.000000000000000000000000000000000000000000000000000000000005609 218.0
YYD1_k127_618731_4 Allophanate hydrolase subunit 1 K06351 - - 0.00000000000000000000000000000000000000000000000000000005744 207.0
YYD1_k127_618731_5 Aldehyde dehydrogenase family K22187 - - 0.0000000000000000000000000000000000000000000000006521 179.0
YYD1_k127_618731_6 RF-1 domain K15034 - - 0.000000000000000000000000000001396 126.0
YYD1_k127_618731_7 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.00000000000000000000000000000157 127.0
YYD1_k127_618731_8 Gram-negative bacterial TonB protein C-terminal K03832 - - 0.0000000000000000000002271 106.0
YYD1_k127_618731_9 - - - - 0.000000000000000000001679 109.0
YYD1_k127_6188879_0 DNA ligase (ATP) activity K01971 - 6.5.1.1 3.506e-309 968.0
YYD1_k127_6188879_1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 0.00000000000000004836 85.0
YYD1_k127_6189932_0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002734 535.0
YYD1_k127_6189932_1 amine dehydrogenase activity - - - 0.0007477 48.0
YYD1_k127_6197389_0 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001429 395.0
YYD1_k127_6197389_1 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006394 309.0
YYD1_k127_6197389_2 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.000000000000006509 76.0
YYD1_k127_620191_0 MacB-like periplasmic core domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003494 481.0
YYD1_k127_6208109_0 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 531.0
YYD1_k127_6208109_1 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 0.000000000000000000000000000000000000000000000000000000000000000002486 230.0
YYD1_k127_6208109_2 Catalyzes the formation of 4-diphosphocytidyl-2-C- methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4- phosphate (MEP) K00991 - 2.7.7.60 0.000000000000000000000000000000000000000000000000000006486 199.0
YYD1_k127_6208109_3 Telomere recombination K07566 - 2.7.7.87 0.0000000006788 70.0
YYD1_k127_6210019_0 Carboxypeptidase regulatory-like domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006084 340.0
YYD1_k127_6210019_1 DinB family - - - 0.000000000000000000000000000000000000000000002619 171.0
YYD1_k127_6210019_2 dEAD DEAH box helicase K03724,K06877 - - 0.0000000000000000000000000000000001395 137.0
YYD1_k127_6221053_0 Cytochrome C assembly protein K02195 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004059 252.0
YYD1_k127_6221053_1 CcmB protein K02194 - - 0.0000000000000000000000000000000000000000000000000000003601 202.0
YYD1_k127_6221053_2 PFAM ABC transporter K01990,K02193,K09697 - 3.6.3.41,3.6.3.7 0.000000000000000000000000000000000000000000000001638 182.0
YYD1_k127_6221053_3 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.000000000000000000000000000000000001086 139.0
YYD1_k127_6246673_0 diguanylate cyclase K02488 - 2.7.7.65 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006831 394.0
YYD1_k127_6246673_1 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 313.0
YYD1_k127_6246673_2 Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA K01754 - 4.3.1.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000006393 273.0
YYD1_k127_6249907_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.0 1156.0
YYD1_k127_6249907_1 PFAM SPFH domain Band 7 family - - - 0.0000000000000242 85.0
YYD1_k127_6276349_0 LysE type translocator - - - 0.0000000000000000000000000000000000000000000001135 176.0
YYD1_k127_6276349_1 Cupin 2, conserved barrel domain protein - - - 0.00000000000000000000000000000000005552 138.0
YYD1_k127_6276349_2 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL K07303 - 1.3.99.16 0.000000000000000000000000007338 111.0
YYD1_k127_6276349_3 SnoaL-like domain - - - 0.00000000000000000000184 96.0
YYD1_k127_6322538_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03043 - 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007652 608.0
YYD1_k127_6322538_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 - 2.7.7.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006521 566.0
YYD1_k127_6325114_0 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance K00951 - 2.7.6.5 1.403e-283 888.0
YYD1_k127_6325114_1 EVE domain - - - 0.0000000000000000000000000000000000000000000000006546 178.0
YYD1_k127_6325114_2 RadC-like JAB domain K03630 - - 0.00000000000000000000000000000000000001425 146.0
YYD1_k127_6363081_0 Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes K06898,K09121 - 4.99.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000239 273.0
YYD1_k127_6363081_1 chaperone-mediated protein folding - - - 0.000000000000000000000000004376 126.0
YYD1_k127_6364952_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 1.331e-240 768.0
YYD1_k127_6364952_1 Cys/Met metabolism PLP-dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 451.0
YYD1_k127_6364952_10 peptidase - - - 0.000000000000000000000000000000000000000000000000000000000000000169 242.0
YYD1_k127_6364952_11 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000001932 166.0
YYD1_k127_6364952_12 - - - - 0.00000000000000000005874 96.0
YYD1_k127_6364952_2 ROK family K00845 - 2.7.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001494 409.0
YYD1_k127_6364952_3 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008215 344.0
YYD1_k127_6364952_4 Histidine kinase-like ATPases - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008632 324.0
YYD1_k127_6364952_5 ABC transporter K09812 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007767 272.0
YYD1_k127_6364952_6 Glycosyltransferase family 9 (heptosyltransferase) K02843 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001157 273.0
YYD1_k127_6364952_7 Part of the ABC transporter FtsEX involved in K09811 - - 0.000000000000000000000000000000000000000000000000000000000000000000011 243.0
YYD1_k127_6364952_8 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000000000003487 235.0
YYD1_k127_6364952_9 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000000000000000000004577 229.0
YYD1_k127_6393374_0 - - - - 0.00000000000000000000000000000000000000000000000000000002701 211.0
YYD1_k127_6393374_1 Multicopper oxidase K22348 - 1.16.3.3 0.00000000000000000000000000000000000000000000000005414 193.0
YYD1_k127_6393374_2 - - - - 0.0002478 46.0
YYD1_k127_6399960_0 domain, Protein - - - 1.857e-289 902.0
YYD1_k127_6399960_1 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 1.168e-226 715.0
YYD1_k127_6399960_2 hydrolase NrgC K22027 - 1.14.13.235 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001701 282.0
YYD1_k127_6399960_3 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004243 259.0
YYD1_k127_6399960_4 - - - - 0.0000000001744 63.0
YYD1_k127_6399960_5 - - - - 0.00005061 52.0
YYD1_k127_6418625_0 Dienelactone hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000219 312.0
YYD1_k127_6418625_1 protein kinase activity K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000004675 194.0
YYD1_k127_6455701_0 tRNA-splicing ligase RtcB K14415 - 6.5.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001361 576.0
YYD1_k127_6455701_1 Sodium/hydrogen exchanger family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001161 353.0
YYD1_k127_6455701_2 GMC oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000002293 252.0
YYD1_k127_6455701_3 Archease protein family (MTH1598/TM1083) - - - 0.0000000007514 67.0
YYD1_k127_6473310_0 Amidohydrolase family K06015 - 3.5.1.81 3.633e-244 766.0
YYD1_k127_6473310_1 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000003153 145.0
YYD1_k127_6473310_2 metal-dependent hydrolase with the TIM-barrel fold - - - 0.000006978 48.0
YYD1_k127_6480010_0 tRNA synthetases class II (D, K and N) K01893 - 6.1.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001286 584.0
YYD1_k127_6480010_1 enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0001178 46.0
YYD1_k127_6484805_0 Sortilin, neurotensin receptor 3, - - - 0.0 1322.0
YYD1_k127_6484805_1 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003742 382.0
YYD1_k127_6523791_0 Insulinase (Peptidase family M16) K07263 - - 5.757e-273 873.0
YYD1_k127_6523791_1 Peptidase dimerisation domain K12941 - - 5.649e-223 703.0
YYD1_k127_6523791_10 COG0823 Periplasmic component of the Tol biopolymer transport system - - - 0.000000000000000000000000000202 119.0
YYD1_k127_6523791_2 Bacterial protein of unknown function (DUF885) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004678 449.0
YYD1_k127_6523791_3 peptidase activity K01266 - 3.4.11.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007028 387.0
YYD1_k127_6523791_4 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002132 255.0
YYD1_k127_6523791_5 Nicotinamide mononucleotide transporter K03811 - - 0.00000000000000000000000000000000000000000000000000000000006676 216.0
YYD1_k127_6523791_6 DinB superfamily - - - 0.00000000000000000000000000000000000000000000004253 177.0
YYD1_k127_6523791_7 Putative heavy-metal-binding - - - 0.0000000000000000000000000000000000000004888 151.0
YYD1_k127_6523791_8 Phosphoglycerate mutase family - - - 0.00000000000000000000000000000000000009505 149.0
YYD1_k127_6523791_9 helix_turn_helix, arabinose operon control protein - - - 0.00000000000000000000000000000003325 136.0
YYD1_k127_6549797_0 One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex K02519 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000158 600.0
YYD1_k127_6549797_1 Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs K03177 GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0030312,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:1901360,GO:1990481 5.4.99.25 0.00000000000000000000000000000000000000000000000000000002222 211.0
YYD1_k127_6549797_2 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA K02834 - - 0.00000000000000156 81.0
YYD1_k127_6579422_0 Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family K18138 - - 7.141e-297 940.0
YYD1_k127_6579422_1 efflux transmembrane transporter activity K18300,K18308 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002453 398.0
YYD1_k127_6579422_2 PFAM bifunctional deaminase-reductase domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 292.0
YYD1_k127_6579422_3 Involved in the TonB-independent uptake of proteins K03641 - - 0.000000005411 63.0
YYD1_k127_6579422_4 Periplasmic component of the Tol biopolymer transport system - - - 0.000158 45.0
YYD1_k127_6580237_0 Dienelactone hydrolase family - - - 5.742e-215 680.0
YYD1_k127_6620829_0 POT family K03305 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 500.0
YYD1_k127_664703_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000007996 297.0
YYD1_k127_664703_1 DinB superfamily - - - 0.0000000000000000000000000000000000161 135.0
YYD1_k127_664703_2 Antibiotic biosynthesis monooxygenase - - - 0.000000000000000000000000000000001565 132.0
YYD1_k127_6681919_0 RDD family K06384 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001531 361.0
YYD1_k127_6681919_1 COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs K03518 - 1.2.5.3 0.00000000000000000000000000000000000000000000000000000000000000000008386 235.0
YYD1_k127_6681919_2 pathogenesis - - - 0.0000000000000000007268 96.0
YYD1_k127_6685378_0 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008207 480.0
YYD1_k127_6685378_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001858 465.0
YYD1_k127_6685378_2 - - - - 0.00000000000000000000000009036 115.0
YYD1_k127_6735162_0 HELICc2 K03722 - 3.6.4.12 9.88e-273 864.0
YYD1_k127_6735162_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 527.0
YYD1_k127_6735162_2 Aminotransferase class I and II K10206 - 2.6.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003714 354.0
YYD1_k127_6735162_3 Domain of unknown function (DUF2437) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002713 262.0
YYD1_k127_6735162_4 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division K20543 - - 0.000392 44.0
YYD1_k127_6748121_0 Dienelactone hydrolase family - - - 2.602e-295 914.0
YYD1_k127_6748121_1 succinyl-diaminopimelate desuccinylase activity K01295 - 3.4.17.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151 497.0
YYD1_k127_6758146_0 MacB-like periplasmic core domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003607 374.0
YYD1_k127_6758146_1 pilus organization - - - 0.000000000000000000000000000000000000000000004333 183.0
YYD1_k127_6758146_2 N-Acetylmuramoyl-L-alanine amidase - - - 0.000000000000000000000000000000000003674 159.0
YYD1_k127_6758146_3 Thioredoxin - - - 0.00000000000000000000000000004836 129.0
YYD1_k127_6763870_0 Glutamine synthetase type III K01915 - 6.3.1.2 2.65e-208 657.0
YYD1_k127_6763870_1 Transcriptional regulator PadR-like family - - - 0.000000000000000000003022 94.0
YYD1_k127_6768359_0 Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2) K11785 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004677 350.0
YYD1_k127_6768359_1 HD domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 322.0
YYD1_k127_6768359_2 COG4775 Outer membrane protein protective antigen OMA87 - - - 0.000000000000000000000001143 119.0
YYD1_k127_6768359_3 - - - - 0.000000000000000000000416 110.0
YYD1_k127_6768359_4 Histidine kinase-like ATPase domain - - - 0.00000000000001885 83.0
YYD1_k127_676999_0 Metallo-beta-lactamase superfamily K17837 - 3.5.2.6 0.00000000000000000000000000000000000000000000000008274 183.0
YYD1_k127_6773715_0 ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP K03544 GO:0000166,GO:0000502,GO:0002020,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009376,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019899,GO:0019904,GO:0030163,GO:0030164,GO:0030554,GO:0031597,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043335,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051301,GO:0051704,GO:0070011,GO:0071704,GO:0097159,GO:0097367,GO:0097718,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904949,GO:1905368,GO:1905369 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001926 308.0
YYD1_k127_6773715_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000689 306.0
YYD1_k127_6773715_2 Necessary for normal cell division and for the maintenance of normal septation K03978 - - 0.000000000000000000000000000000000001593 146.0
YYD1_k127_6781645_0 PFAM AMP-dependent synthetase and ligase K00666 - - 1.039e-197 632.0
YYD1_k127_6781645_1 Amidohydrolase family - - - 0.0000000001217 63.0
YYD1_k127_678888_0 Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA K01895 - 6.2.1.1 1.252e-271 852.0
YYD1_k127_678888_1 Belongs to the binding-protein-dependent transport system permease family K01995,K01998 - - 0.000000000001666 68.0
YYD1_k127_678888_2 involved in lipopolysaccharide synthesis - - - 0.000003361 53.0
YYD1_k127_6804154_0 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 1.653e-284 890.0
YYD1_k127_6804154_1 gluconolactonase activity K01053 - 3.1.1.17 2.539e-210 666.0
YYD1_k127_6804154_2 Helix-turn-helix XRE-family like proteins - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000652 333.0
YYD1_k127_6804154_3 Cupin 2, conserved barrel domain protein K11477 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006688 336.0
YYD1_k127_6804154_4 Pyridine nucleotide-disulfide oxidoreductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007274 285.0
YYD1_k127_6804154_5 [2Fe-2S] binding domain K07302 - 1.3.99.16 0.0000000000000000000000000000000000000000000000000000000000000000000000009878 250.0
YYD1_k127_6804154_6 - - - - 0.0000000000000000000000008298 111.0
YYD1_k127_6804154_7 Dienelactone hydrolase family - - - 0.00000000000000004095 85.0
YYD1_k127_6807792_0 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate K01681 - 4.2.1.3 0.0 1138.0
YYD1_k127_6807792_1 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004598 314.0
YYD1_k127_6814562_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003317 397.0
YYD1_k127_6814562_1 Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits - - - 0.00000000002077 66.0
YYD1_k127_6814562_2 Essential for recycling GMP and indirectly, cGMP K00942 GO:0003674,GO:0003824,GO:0004385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009179,GO:0009185,GO:0009259,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042278,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046128,GO:0046483,GO:0046710,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.4.8 0.00001321 49.0
YYD1_k127_6841403_0 Protein of unknown function, DUF255 K06888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007276 395.0
YYD1_k127_6841403_1 DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate K10773 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002412 280.0
YYD1_k127_6873770_0 Cys/Met metabolism PLP-dependent enzyme K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602 476.0
YYD1_k127_6873770_1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain K07303 - 1.3.99.16 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002514 424.0
YYD1_k127_6873770_2 acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008015 340.0
YYD1_k127_6873770_3 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000000000000000000000000000000000000000000000000001938 235.0
YYD1_k127_6873770_4 NAD(P)H-binding K01784 - 5.1.3.2 0.00000000000000000000000000000000000000000000000000000001173 209.0
YYD1_k127_6873770_5 TIGRFAM M6 family metalloprotease domain - - - 0.00000000000000000000000000000000000221 159.0
YYD1_k127_6873770_6 phosphatidate phosphatase activity K00901,K01096,K19302 - 2.7.1.107,3.1.3.27,3.1.3.4,3.1.3.81,3.6.1.27 0.0000000000000000000000008875 120.0
YYD1_k127_6873770_7 Copper binding proteins, plastocyanin/azurin family K02638 - - 0.0000000815 54.0
YYD1_k127_688102_0 phosphorelay signal transduction system K07713 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003018 301.0
YYD1_k127_688102_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.000000000000000000000000000000001385 136.0
YYD1_k127_688102_2 - - - - 0.000000000000000000000000000000256 138.0
YYD1_k127_688917_0 efflux transmembrane transporter activity K02004 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104 450.0
YYD1_k127_688917_1 efflux transmembrane transporter activity K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004441 367.0
YYD1_k127_688917_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000565 314.0
YYD1_k127_688917_3 PFAM ABC transporter related K02003 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000544 299.0
YYD1_k127_688917_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001471 295.0
YYD1_k127_688917_5 - - - - 0.0000000000000000000000000000000000004972 151.0
YYD1_k127_688917_6 DinB family - - - 0.00000000000000000001783 104.0
YYD1_k127_6920503_0 Bacterial regulatory protein, Fis family - - - 1.454e-207 655.0
YYD1_k127_6920503_1 UDP-N-acetylglucosamine 2-epimerase K01791 - 5.1.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007466 411.0
YYD1_k127_6920503_2 His Kinase A (phosphoacceptor) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000006391 261.0
YYD1_k127_6920503_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000006484 239.0
YYD1_k127_6920503_4 polysaccharide biosynthetic process K19431 - - 0.000000000000000000000000000000000000000000000000000000000000001504 238.0
YYD1_k127_6920503_5 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000465 121.0
YYD1_k127_6920503_6 Glycosyltransferase like family 2 - - - 0.000000000000000000008748 98.0
YYD1_k127_698814_0 Beta-lactamase - - - 0.0000000000000000000000000000000000000000000000000000000000002282 223.0
YYD1_k127_698814_1 glyoxalase bleomycin resistance protein dioxygenase - - - 0.00000000000000000000000000000000000001183 149.0
YYD1_k127_698814_2 Protein of unknown function (DUF3224) - - - 0.000000000000000000000000000000004173 132.0
YYD1_k127_698814_3 amine dehydrogenase activity - - - 0.000000000004313 78.0
YYD1_k127_699655_0 serine-type exopeptidase activity K01322 GO:0005575,GO:0005623,GO:0042597,GO:0044464 3.4.21.26 7.466e-312 975.0
YYD1_k127_699655_1 Catalyzes the release of L-lysine from LysW -gamma-L- lysine K05831 - - 0.00000000000000000000000000000000000000000000000000000003157 205.0
YYD1_k127_706728_0 Ribosomal protein S2 K02967 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 354.0
YYD1_k127_706728_1 Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) K00099 - 1.1.1.267 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002814 343.0
YYD1_k127_706728_2 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004299 308.0
YYD1_k127_706728_3 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001706 307.0
YYD1_k127_706728_4 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001218 269.0
YYD1_k127_706728_5 zinc metalloprotease K11749 - - 0.000000000000000000000000000000000000000000000000000000000000000002448 243.0
YYD1_k127_706728_6 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 - - 0.000000000000000000000000000000000000000000000000000000000000002514 224.0
YYD1_k127_706728_7 Cytidylyltransferase family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000001203 182.0
YYD1_k127_72528_0 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.0 1017.0
YYD1_k127_72528_1 Serine/Threonine protein kinases, catalytic domain K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003207 389.0
YYD1_k127_72528_2 Nodulation protein S (NodS) - - - 0.00000000000000000000000000000000000000000000000000000000003759 218.0
YYD1_k127_72875_0 Amidohydrolase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001534 320.0
YYD1_k127_72875_1 Serine aminopeptidase, S33 - - - 0.00000000000000000000000000000000000000000000000000000006906 203.0
YYD1_k127_729659_0 Heat shock 70 kDa protein K04043 - - 2.093e-319 987.0
YYD1_k127_729659_1 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004255 398.0
YYD1_k127_729659_2 Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase K03545 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002107 303.0
YYD1_k127_729659_3 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000000000000001097 184.0
YYD1_k127_732535_0 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain K06978 - - 1.023e-213 678.0
YYD1_k127_732535_1 Alcohol dehydrogenase GroES-like domain K13953 - 1.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003486 476.0
YYD1_k127_732535_2 Membrane dipeptidase (Peptidase family M19) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008932 398.0
YYD1_k127_73643_0 Beta-eliminating lyase K00639 - 2.3.1.29 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003368 546.0
YYD1_k127_73643_1 Zinc-binding dehydrogenase K00060 - 1.1.1.103 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000774 400.0
YYD1_k127_73643_2 phosphoribosylamine-glycine ligase activity K01919 - 6.3.2.2 0.000000000000000000000000000000000000000000000000000000003285 215.0
YYD1_k127_73643_3 Methylpurine-DNA glycosylase (MPG) K03652 - 3.2.2.21 0.00000000000000000000000000000000000000007408 156.0
YYD1_k127_73643_4 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000305 112.0
YYD1_k127_748195_0 Metal dependent phosphohydrolases with conserved 'HD' motif. - - - 0.00000000000000000000000000000000000000000000008883 172.0
YYD1_k127_748195_1 HD superfamily hydrolase involved in NAD metabolism K00950 - 2.7.6.3 0.00000000000000000000000000000000000000001584 156.0
YYD1_k127_748195_2 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K03406 - - 0.0000000000000000000000003145 123.0
YYD1_k127_791561_0 tail specific protease K03797 - 3.4.21.102 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007069 557.0
YYD1_k127_791561_1 Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity K07456 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006734 336.0
YYD1_k127_791561_2 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000000000000000000000001061 218.0
YYD1_k127_791561_3 PFAM Histidine triad (HIT) protein K02503 - - 0.00000000000000000000000000000000131 132.0
YYD1_k127_791561_4 Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits K02112 - 3.6.3.14 0.0000000000000000000000005367 107.0
YYD1_k127_791561_5 Ribosomal protein S21 K02970 - - 0.000000000000000000000007816 101.0
YYD1_k127_793600_0 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006817 368.0
YYD1_k127_793600_1 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002548 320.0
YYD1_k127_793600_2 Oligopeptide/dipeptide transporter, C-terminal region K02032,K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000006873 298.0
YYD1_k127_793600_3 Binding-protein-dependent transport system inner membrane component K02034 - - 0.00000000000000000000000000000000000000000000000000000000000000001298 245.0
YYD1_k127_793600_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000001227 234.0
YYD1_k127_793600_5 Biotin/lipoate A/B protein ligase family K03800 - 6.3.1.20 0.000000000000000000000000000000000000000001417 164.0
YYD1_k127_793627_0 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00162 - 1.2.4.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 419.0
YYD1_k127_793627_1 The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) K00627 - 2.3.1.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005486 420.0
YYD1_k127_793627_2 Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives K03644 - 2.8.1.8 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002893 389.0
YYD1_k127_793763_0 Belongs to the glycosyl hydrolase 1 family K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002016 518.0
YYD1_k127_793763_1 TOBE domain K10112 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008599 376.0
YYD1_k127_805455_0 tRNA synthetases class I (W and Y) K01867 - 6.1.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001155 413.0
YYD1_k127_805455_1 Type II/IV secretion system protein K02669 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002091 376.0
YYD1_k127_805455_2 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.000000000000000000000005895 104.0
YYD1_k127_805455_3 Inositol monophosphatase K01092 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008934,GO:0009056,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0031403,GO:0031420,GO:0042578,GO:0043167,GO:0043169,GO:0043647,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046174,GO:0046434,GO:0046838,GO:0046855,GO:0046872,GO:0047954,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052834,GO:0065007,GO:0071545,GO:0071704,GO:1901575,GO:1901615,GO:1901616 3.1.3.25 0.00000000000001538 88.0
YYD1_k127_812535_0 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate K14652 - 3.5.4.25,4.1.99.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002097 566.0
YYD1_k127_812535_1 Glycosyl transferases group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002103 401.0
YYD1_k127_812535_10 PTS system fructose IIA component K02744 - - 0.000000000001244 77.0
YYD1_k127_812535_11 riboflavin synthase, alpha subunit K00793 - 2.5.1.9 0.0000009366 52.0
YYD1_k127_812535_2 Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr) K06023 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008082 381.0
YYD1_k127_812535_3 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K08483 - 2.7.3.9 0.00000000000000000000000000000000000000000000000000000000000000000036 240.0
YYD1_k127_812535_4 PTS system sorbose subfamily IIB component K19507 - - 0.00000000000000000000000000000000000000000000002872 174.0
YYD1_k127_812535_5 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin K00794 - 2.5.1.78 0.000000000000000000000000000000000000005661 151.0
YYD1_k127_812535_6 PTS system mannose/fructose/sorbose family IID component K02796 - - 0.00000000000000000000000000000000000009476 154.0
YYD1_k127_812535_7 PTS system sorbose-specific iic component K02795 - - 0.0000000000000000000000000025 124.0
YYD1_k127_812535_8 Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons K03625 - - 0.00000000000000000000671 101.0
YYD1_k127_812535_9 PTS HPr component phosphorylation site K11189 - - 0.00000000000000000003422 103.0
YYD1_k127_842065_0 esterase - - - 2.184e-249 775.0
YYD1_k127_842065_1 Belongs to the amidase family K01426 - 3.5.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002738 409.0
YYD1_k127_842065_2 WD40-like Beta Propeller Repeat K03641 - - 0.0000000000000000000000000000000000000000000004978 175.0
YYD1_k127_868958_0 Amidohydrolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003517 299.0
YYD1_k127_868958_1 Mazg nucleotide pyrophosphohydrolase K00800 - 2.5.1.19 0.000000000000000000000000000000000000000000000002388 177.0
YYD1_k127_868958_2 - - - - 0.0000000002297 66.0
YYD1_k127_874598_0 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00325 - 1.6.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004019 518.0
YYD1_k127_874598_1 The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane K00324 - 1.6.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002089 443.0
YYD1_k127_874598_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002252 425.0
YYD1_k127_874598_3 homoserine kinase K00872 - 2.7.1.39 0.00000000000000000000000000000000000000000000000000000001631 208.0
YYD1_k127_874598_4 COG3288 NAD NADP transhydrogenase alpha subunit K00324 - 1.6.1.2 0.0000000000000000000000000001438 118.0
YYD1_k127_880680_0 Glutamine synthetase type III K01915 - 6.3.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007781 343.0
YYD1_k127_880680_1 ATP-grasp domain K01921 - 6.3.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000176 336.0
YYD1_k127_880680_2 Belongs to the D-alanine--D-alanine ligase family K01921 - 6.3.2.4 0.000000000000000000000009821 117.0
YYD1_k127_887016_0 Pyrimidine nucleoside phosphorylase C-terminal domain K00756 - 2.4.2.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000367 447.0
YYD1_k127_887016_1 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000001216 164.0
YYD1_k127_887016_2 YtxH-like protein - - - 0.00006319 49.0
YYD1_k127_887016_3 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.00008611 53.0
YYD1_k127_887421_0 ATPase P-type (Transporting), HAD superfamily, subfamily IC K01535,K01537 - 3.6.3.6,3.6.3.8 2.227e-316 988.0
YYD1_k127_887421_1 heavy metal translocating P-type ATPase - - - 0.00000003289 55.0
YYD1_k127_888505_0 oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor K00311 GO:0003674,GO:0003824,GO:0004174,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016491,GO:0016645,GO:0016649,GO:0016722,GO:0017133,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043783,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045251,GO:0045333,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051539,GO:0051540,GO:0055114,GO:0070013,GO:0098573,GO:0098798,GO:1902494,GO:1990204 1.5.5.1 4.356e-213 674.0
YYD1_k127_888505_1 Electron transfer flavoprotein domain K03522 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 371.0
YYD1_k127_888505_2 Electron transfer flavoprotein domain K03521 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005231 291.0
YYD1_k127_888505_3 Quinolinate phosphoribosyl transferase, C-terminal domain K00767 - 2.4.2.19 0.0000000000000000000000000000000000000000009993 168.0
YYD1_k127_888505_4 - - - - 0.0000000000000000000000002459 112.0
YYD1_k127_888505_5 Acyl-CoA dehydrogenase, C-terminal domain K00252 - 1.3.8.6 0.000000000000005458 74.0
YYD1_k127_888505_6 - - - - 0.0000009586 58.0
YYD1_k127_890057_0 nuclear chromosome segregation - - - 0.000000000000000000000000000000000000000000000000000000005981 221.0
YYD1_k127_890057_1 Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division K20543 - - 0.000000000000000000000000000001374 139.0
YYD1_k127_890057_2 - - - - 0.00000000000000004565 89.0
YYD1_k127_909416_0 Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly K11942 - 5.4.99.13 0.0 1033.0
YYD1_k127_909637_0 Glycosyl transferase family group 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005573 484.0
YYD1_k127_909637_1 - - - - 0.00000000000000000000000000000000000000000000000000001208 208.0
YYD1_k127_920785_0 Isocitrate/isopropylmalate dehydrogenase K00030 - 1.1.1.41 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002706 362.0
YYD1_k127_920785_1 - - - - 0.000000000000000000002091 109.0
YYD1_k127_922332_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 9.971e-254 801.0
YYD1_k127_922332_1 secondary active sulfate transmembrane transporter activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001261 333.0
YYD1_k127_922332_2 Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis K06997 - - 0.00000000000000000000000000000000000000000000000000000005424 203.0
YYD1_k127_922332_3 DivIVA protein K04074 - - 0.00000000000000000000000006076 117.0
YYD1_k127_924990_0 Sigma-54 factor, Activator interacting domain (AID) K03092 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003091 602.0
YYD1_k127_924990_1 ABC transporter K06861 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002109 400.0
YYD1_k127_924990_2 Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007738 344.0
YYD1_k127_924990_3 - - - - 0.000000000000000000000000000000000000005767 165.0
YYD1_k127_924990_4 Lipopolysaccharide-assembly, LptC-related - - - 0.000000000002391 71.0
YYD1_k127_924990_5 Glycosyl transferase 4-like domain - - - 0.000005947 51.0
YYD1_k127_933070_0 protein kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001327 394.0
YYD1_k127_933070_1 Amidase K01426,K02433 - 3.5.1.4,6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000783 264.0
YYD1_k127_933879_0 Peptidase family M3 K08602 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001772 538.0
YYD1_k127_933879_1 Sugar (and other) transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000144 381.0
YYD1_k127_933879_2 LmbE family - - - 0.0000000000000000000000000000000000000000000000000000000000000001133 231.0
YYD1_k127_939783_0 AcrB/AcrD/AcrF family K03296 - - 0.0 1318.0
YYD1_k127_939783_1 ABC transporter transmembrane region K11085 - - 6.121e-238 751.0
YYD1_k127_939783_2 Biotin-lipoyl like - - - 0.0000000000000000000000000000000000000000000000000000000007637 208.0
YYD1_k127_939783_3 Domain of unknown function (DUF1929) - - - 0.00000000000000000000000000000000000000000000000000000000573 218.0
YYD1_k127_939783_4 TIGRFAM RHS repeat-associated core domain - - - 0.000000000000000000000001978 119.0
YYD1_k127_948155_0 deoxyhypusine monooxygenase activity - - - 0.0000000000000000000000000000000000000000000000000000008204 205.0
YYD1_k127_948155_1 Drug exporters of the RND superfamily K06994,K07003,K20466,K20470 GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006869,GO:0008150,GO:0009273,GO:0009987,GO:0010876,GO:0015920,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0033036,GO:0040007,GO:0042546,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0071554,GO:0071702,GO:0071766,GO:0071840,GO:0071944,GO:1901264 - 0.00000000000000000000000002462 119.0
YYD1_k127_948155_2 Matrixin - - - 0.00000000000000000006365 103.0
YYD1_k127_949158_0 Elongation factor G, domain IV K02355 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002293 593.0
YYD1_k127_949158_1 Carbon-nitrogen hydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 356.0
YYD1_k127_950311_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003675 343.0
YYD1_k127_950311_1 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain - - - 0.000000000000000000000002847 116.0
YYD1_k127_969625_0 Domain of unknown function (DUF4105) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001378 270.0
YYD1_k127_969625_1 beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000000000000194 206.0
YYD1_k127_969625_2 Binds the 23S rRNA K02909 - - 0.00000000000000000000001812 102.0
YYD1_k127_969625_3 Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA K02835 - - 0.00000000000000000001205 95.0
YYD1_k127_969625_4 PFAM Curli production assembly transport component CsgG - - - 0.0001731 53.0
YYD1_k127_977816_0 catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR K03412 - 3.1.1.61,3.5.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000007521 289.0
YYD1_k127_977816_1 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001614 257.0
YYD1_k127_977816_2 - - - - 0.000000000000000000000002038 115.0
YYD1_k127_977816_3 Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis K03411 - 3.5.1.44 0.000000000000000000003003 97.0
YYD1_k127_985500_0 cellulose binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001339 335.0
YYD1_k127_985500_1 COG1680 Beta-lactamase class C and other penicillin binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121 331.0
YYD1_k127_985500_2 Aminotransferase class I and II K10907 - - 0.000000006705 57.0