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Overview

ID MAG04620
Name YYD1_bin.16
Sample SMP0124
Taxonomy
Kingdom Bacteria
Phylum Chloroflexota
Class Anaerolineae
Order Anaerolineales
Family UBA4823
Genus JAKOUW01
Species
Assembly information
Completeness (%) 60.09
Contamination (%) 1.54
GC content (%) 55.0
N50 (bp) 6,547
Genome size (bp) 2,783,316

Location

Module

Module ID Module name Total genes Total steps Contain genes Contain steps Percentage of genes Percentage of steps

Genes2621

Gene name Description KEGG GOs EC E-value Score Sequence
YYD1_k127_1001422_0 PFAM OmpA MotB domain protein K03640 - - 0.000000000000000000000000000000000000000004341 162.0
YYD1_k127_1001422_1 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0019534,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:1901998 - 0.000000000000000000000000000000000007241 138.0
YYD1_k127_1001569_0 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 7.942e-298 942.0
YYD1_k127_1001569_1 bifunctional purine biosynthetic protein K11788 GO:0003674,GO:0003824,GO:0004637,GO:0004641,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009112,GO:0009987,GO:0016874,GO:0016879,GO:0016882,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:1901360,GO:1901564 6.3.3.1,6.3.4.13 1.429e-207 670.0
YYD1_k127_1001569_10 Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL K01952 - 6.3.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002131 303.0
YYD1_k127_1001569_11 Cysteine export CydDC family ABC transporter permease subunit ATP-binding protein CydD K06148,K16013 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001173 257.0
YYD1_k127_1001569_12 Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) K01588 GO:0003674,GO:0003824,GO:0004638,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034023,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 5.4.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000006893 246.0
YYD1_k127_1001569_13 Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate K11175 - 2.1.2.2 0.00000000000000000000000000000000000000000000000000000000000000002106 231.0
YYD1_k127_1001569_14 Belongs to the DNA glycosylase MPG family K03652 - 3.2.2.21 0.000000000000000000000000000000000000000000000000000000000002963 213.0
YYD1_k127_1001569_15 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000000000002634 187.0
YYD1_k127_1001569_16 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000000003764 167.0
YYD1_k127_1001569_17 Bacterial transcription activator, effector binding domain K13653 - - 0.0000000000000000000000001061 121.0
YYD1_k127_1001569_2 Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine K00764 - 2.4.2.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001691 611.0
YYD1_k127_1001569_3 IMP dehydrogenase / GMP reductase domain K00088 - 1.1.1.205 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000667 610.0
YYD1_k127_1001569_4 PFAM cytochrome bd ubiquinol oxidase subunit I K00425 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008851 591.0
YYD1_k127_1001569_5 Bifunctional purine biosynthesis protein PurH K00602 - 2.1.2.3,3.5.4.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001249 576.0
YYD1_k127_1001569_6 Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) K01589 - 6.3.4.18 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004141 446.0
YYD1_k127_1001569_7 PFAM cytochrome bd ubiquinol oxidase subunit II K00426 - 1.10.3.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001974 438.0
YYD1_k127_1001569_8 SAICAR synthetase K01923 - 6.3.2.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 424.0
YYD1_k127_1001569_9 Enoyl- acyl-carrier-protein reductase NADH K00208 - 1.3.1.10,1.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001717 331.0
YYD1_k127_1041396_0 Amidohydrolase family K01464,K01466 - 3.5.2.2,3.5.2.5 2.505e-222 697.0
YYD1_k127_1041396_1 PFAM glycoside hydrolase, family 1 K05350 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002816 531.0
YYD1_k127_1041396_2 Belongs to the thiolase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003337 414.0
YYD1_k127_1041396_4 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950,K09007,K13940,K17488 - 2.7.6.3,3.5.4.16,3.5.4.39,4.1.2.25 0.00000000000000000000000000000000000000000000003142 176.0
YYD1_k127_1041396_5 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000003359 132.0
YYD1_k127_1041396_7 Uncharacterized protein conserved in bacteria (DUF2219) - - - 0.000000000000000000000000003609 117.0
YYD1_k127_1049588_0 Protein of unknown function (DUF4038) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004135 262.0
YYD1_k127_1057292_0 Bacterial cellulose synthase subunit K20541 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005688 481.0
YYD1_k127_1057292_1 PFAM glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000786 433.0
YYD1_k127_1057292_2 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000704 427.0
YYD1_k127_1057292_3 transferase activity, transferring glycosyl groups K16148 - 2.4.1.342 0.00000000000000000000000000000000000000000000000000000000237 205.0
YYD1_k127_1057292_4 Domain of unknown function (DUF4442) - - - 0.00000001711 55.0
YYD1_k127_1072784_0 AAA domain - - - 0.0000000000000000000000000000000000000000000000000000000009739 218.0
YYD1_k127_1080222_0 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07104 - 1.13.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004324 310.0
YYD1_k127_1080222_1 transcriptional regulator - - - 0.0000000000000000000000000000000000006226 147.0
YYD1_k127_1114532_0 thiolester hydrolase activity K06889 - - 0.0000000000000000000000000000000000000000000000000000000000000000002407 240.0
YYD1_k127_1114532_1 Periplasmic copper-binding protein (NosD) - - - 0.00000000000000000000000000000000000000000000000000007916 204.0
YYD1_k127_1114532_2 DNA binding - - - 0.00000000000000000000002507 102.0
YYD1_k127_112185_0 Diguanylate cyclase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 365.0
YYD1_k127_1132158_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000004018 160.0
YYD1_k127_1132158_1 COG0491 Zn-dependent hydrolases, including glyoxylases - - - 0.0000000000000000000000001654 112.0
YYD1_k127_1132868_0 Dimerisation domain - - - 0.00000000000000004179 93.0
YYD1_k127_1153913_0 PQQ-like domain K05889,K12132 - 1.1.2.6,2.7.11.1 0.0000000000000000000000000000000000000000000000000003409 192.0
YYD1_k127_1153913_1 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000009118 156.0
YYD1_k127_1175373_0 Ferric reductase like transmembrane component - - - 0.0000000000000000000000000000000000000000000000000000000001197 220.0
YYD1_k127_1181832_0 Leucine carboxyl methyltransferase - - - 0.0000000000000000000000000000000000000000000000003528 184.0
YYD1_k127_1181832_1 methyltransferase activity - - - 0.00000000000000000000000003864 116.0
YYD1_k127_1181832_2 methyltransferase activity - - - 0.0000000000003201 75.0
YYD1_k127_1189680_0 pilus organization K02674,K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002742 402.0
YYD1_k127_1189680_1 SdrD B-like domain - - - 0.00000000000000000000000000000000000000000000000000000009264 225.0
YYD1_k127_1189680_2 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0000000000000000000000000000000000000000000002064 194.0
YYD1_k127_1189680_3 PFAM Diacylglycerol kinase, catalytic domain - - - 0.00000000000001061 77.0
YYD1_k127_1205478_0 aromatic amino acid beta-eliminating lyase threonine aldolase K01620 - 4.1.2.48 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002658 442.0
YYD1_k127_1205478_1 Responsible for synthesis of pseudouridine from uracil K06180 GO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360 5.4.99.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006711 404.0
YYD1_k127_1205478_2 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate K03783 - 2.4.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005041 373.0
YYD1_k127_1205478_3 N-terminal 7TM region of histidine kinase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002297 342.0
YYD1_k127_1205478_4 Glycosyl transferases group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 322.0
YYD1_k127_1205478_5 rRNA (adenine-N6,N6-)-dimethyltransferase activity K00561,K02528 GO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.182,2.1.1.184 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001055 281.0
YYD1_k127_1205478_6 synthase K01737 - 4.1.2.50,4.2.3.12 0.00000000000000000000000000000000000000000000000007441 180.0
YYD1_k127_1205478_7 This protein specifically catalyzes the removal of signal peptides from prolipoproteins K03101 - 3.4.23.36 0.0000000000000000000000000000000000000000006526 163.0
YYD1_k127_1205478_8 acetyltransferase K06889,K19273 - - 0.000000000000000000000000000000000000002564 152.0
YYD1_k127_1205478_9 - - - - 0.0000000000000000000000000000000001399 141.0
YYD1_k127_1207681_0 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 0.000000000000000000000000000000000000000000000000000001878 201.0
YYD1_k127_1207681_1 Predicted membrane protein (DUF2085) - - - 0.0000000008663 64.0
YYD1_k127_1207681_2 COG1622 Heme copper-type cytochrome quinol oxidases, subunit 2 K02275 - 1.9.3.1 0.00000002224 65.0
YYD1_k127_1207681_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000002931 62.0
YYD1_k127_1210400_0 A-macroglobulin receptor - - - 0.0 1405.0
YYD1_k127_1210400_1 Dehydrogenase E1 component K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003716 496.0
YYD1_k127_1210400_2 negative regulation of transcription, DNA-templated K10947 - - 0.000000000000000000000000002482 114.0
YYD1_k127_1210571_0 Participates in initiation and elongation during chromosome replication K02314 - 3.6.4.12 4.609e-202 638.0
YYD1_k127_1210571_1 PFAM IstB domain protein ATP-binding protein K02315 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003973 496.0
YYD1_k127_1210571_2 phosphorelay signal transduction system - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001877 247.0
YYD1_k127_1210571_3 Bifunctional nuclease K08999 - - 0.00000000000000000000000000000000000000000000000000000000000007044 220.0
YYD1_k127_1210571_4 TIGRFAM primosome, DnaD subunit - - - 0.000000000000000000000000000000000000008263 154.0
YYD1_k127_1210571_5 Belongs to the archaeal adenylate kinase family K00939 - 2.7.4.3 0.00000000000000002522 85.0
YYD1_k127_1212886_0 AAA domain K07321 - - 0.0000000000000000000000000000000000000000000000000000000000000004836 229.0
YYD1_k127_1212886_1 PFAM CobQ CobB MinD ParA nucleotide binding domain K07321 - - 0.0000000000000000000000000000000000000000006015 162.0
YYD1_k127_1212886_2 PFAM phospholipase Carboxylesterase K06999 - - 0.00000000000000000000000000000002284 134.0
YYD1_k127_1212895_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000001063 297.0
YYD1_k127_1215892_0 Penicillin-Binding Protein C-terminus Family - - - 0.0000000000000000000000000000000000000000000000000000000000000002837 231.0
YYD1_k127_1215892_1 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000001122 214.0
YYD1_k127_1215892_2 PFAM ROK family protein - - - 0.000000000000000000000000000000000000000000000000000000001628 206.0
YYD1_k127_1227569_0 FGGY family of carbohydrate kinases, N-terminal domain K00848 - 2.7.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004005 530.0
YYD1_k127_1227569_1 ABC-type sugar transport system periplasmic component K02058,K10559 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001312 457.0
YYD1_k127_1227569_2 Belongs to the binding-protein-dependent transport system permease family K10561 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001607 409.0
YYD1_k127_1227569_3 Belongs to the binding-protein-dependent transport system permease family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001589 386.0
YYD1_k127_1227569_4 Class ii aldolase K01628,K01629 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0008994,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0019321,GO:0019323,GO:0042802,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.2.17,4.1.2.19 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002342 342.0
YYD1_k127_1227569_5 rhamnose metabolic process K03534 - 5.1.3.32 0.000000000000000000000000000000000000000000001221 168.0
YYD1_k127_1230762_0 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex K03572 - - 3.477e-223 709.0
YYD1_k127_1230762_1 Amino acid permease - GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015179,GO:0015291,GO:0015297,GO:0015318,GO:0015711,GO:0015807,GO:0015849,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0098656,GO:1902475,GO:1903825,GO:1905039 - 3.488e-216 684.0
YYD1_k127_1230762_10 TrkA-N domain K03499,K10716 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005226 254.0
YYD1_k127_1230762_11 NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form K12410 - - 0.0000000000000000000000000000000000000000000000000000000000000000003842 237.0
YYD1_k127_1230762_12 PFAM single-stranded nucleic acid binding R3H domain protein K06346 - - 0.000000000000000000000000000000000000000000000000000000000000000002215 234.0
YYD1_k127_1230762_13 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.000000000000000000000000000000000000000000000000006516 188.0
YYD1_k127_1230762_14 Coenzyme A transferase K01028,K01039 - 2.8.3.12,2.8.3.5 0.000000000000000000000000000000000000000000000004692 182.0
YYD1_k127_1230762_15 GAF domain - - - 0.0000000000000000000000000000000000000000000002194 182.0
YYD1_k127_1230762_16 Could be involved in insertion of integral membrane proteins into the membrane K08998 - - 0.000000000000000000000000000000000786 132.0
YYD1_k127_1230762_17 PQQ enzyme repeat - - - 0.000000000000000000000003712 115.0
YYD1_k127_1230762_18 Ribosomal protein L34 K02914 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000004564 87.0
YYD1_k127_1230762_19 RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme K03536 - 3.1.26.5 0.000000000000000005761 87.0
YYD1_k127_1230762_2 Belongs to the peptidase S41A family K03797 - 3.4.21.102 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004158 415.0
YYD1_k127_1230762_20 Belongs to the 'phage' integrase family K04763 - - 0.00000000000002176 73.0
YYD1_k127_1230762_3 COG1063 Threonine dehydrogenase and related Zn-dependent K00008 - 1.1.1.14 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003175 378.0
YYD1_k127_1230762_4 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine K00760,K04075,K15780 - 2.4.2.8,6.3.4.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 338.0
YYD1_k127_1230762_5 AAA domain K02282 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 325.0
YYD1_k127_1230762_6 TrkA-C domain K03499 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008259 308.0
YYD1_k127_1230762_7 PFAM 60 kDa inner membrane insertion protein K03217 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007227 273.0
YYD1_k127_1230762_8 lysyltransferase activity K07027 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003913 273.0
YYD1_k127_1230762_9 PFAM PfkB domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002908 255.0
YYD1_k127_1231240_0 PFAM metal-dependent phosphohydrolase, HD sub domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053 348.0
YYD1_k127_1231240_1 Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000009175 275.0
YYD1_k127_1231240_2 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000000003234 219.0
YYD1_k127_1231240_3 Bacteriocin-protection, YdeI or OmpD-Associated - - - 0.00000000000000000000000000007038 121.0
YYD1_k127_1231240_4 - - - - 0.00000000000006329 73.0
YYD1_k127_1244863_0 Protein of unknown function, DUF255 K06888 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007099 571.0
YYD1_k127_1244863_1 Endonuclease/Exonuclease/phosphatase family K01142 - 3.1.11.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008626 290.0
YYD1_k127_1244863_2 Pfam:DUF2029 - - - 0.00000000000000000000000000000004254 139.0
YYD1_k127_1244863_3 C-terminal four TMM region of protein-O-mannosyltransferase - - - 0.00000000000000000000000002215 117.0
YYD1_k127_1286397_0 GTPase that plays an essential role in the late steps of ribosome biogenesis K03977 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002625 480.0
YYD1_k127_1286397_1 Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A K00859 - 2.7.1.24 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003145 449.0
YYD1_k127_1286397_2 PFAM YbbR family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001699 331.0
YYD1_k127_1286397_3 Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria K18672 - 2.7.7.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001734 325.0
YYD1_k127_1286397_4 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000001099 89.0
YYD1_k127_1302277_0 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003038 280.0
YYD1_k127_1302277_1 3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase K03660 - 4.2.99.18 0.0000000000000000000000000000000000000000000000000003169 193.0
YYD1_k127_1302277_2 Putative stress-induced transcription regulator - - - 0.0000000000000000000000000000000000000000000000008982 181.0
YYD1_k127_1302277_3 N-4 methylation of cytosine K00590 - 2.1.1.113 0.00000000000000000001428 95.0
YYD1_k127_1306859_0 choline dehydrogenase activity K03333 GO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009405,GO:0016491,GO:0016614,GO:0016899,GO:0016995,GO:0044419,GO:0051704,GO:0055114 1.1.3.6 1.589e-230 728.0
YYD1_k127_1306859_1 Belongs to the thiolase family K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009973 460.0
YYD1_k127_1306859_10 Divergent PAP2 family K09775 - - 0.00000000000000000000000000000000000000000000121 169.0
YYD1_k127_1306859_11 Serine aminopeptidase, S33 - - - 0.0000000000000000000000000000000001561 145.0
YYD1_k127_1306859_12 One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex K02518 - - 0.0000000000000000000000000000000003143 133.0
YYD1_k127_1306859_13 alginic acid biosynthetic process - - - 0.0000000000000000000000000000006963 142.0
YYD1_k127_1306859_14 Ribosomal protein S21 K02970 - - 0.000000000000000000004241 93.0
YYD1_k127_1306859_15 PFAM Acetyltransferase (GNAT) family K00619 - 2.3.1.1 0.00000000000000003365 87.0
YYD1_k127_1306859_16 exodeoxyribonuclease VII activity K03602 GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006308,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008855,GO:0009056,GO:0009057,GO:0009318,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019439,GO:0032991,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901361,GO:1901575,GO:1902494 3.1.11.6 0.00000008851 56.0
YYD1_k127_1306859_2 Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides K03601 - 3.1.11.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005582 434.0
YYD1_k127_1306859_3 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K00074 - 1.1.1.157 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009641 361.0
YYD1_k127_1306859_4 Involved in DNA repair and RecF pathway recombination K03584 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 299.0
YYD1_k127_1306859_5 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000002819 314.0
YYD1_k127_1306859_6 Aldo/keto reductase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005323 284.0
YYD1_k127_1306859_7 SMART helix-turn-helix domain protein K15539 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000009349 272.0
YYD1_k127_1306859_8 Binds to the 23S rRNA K02939 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000002715 216.0
YYD1_k127_1306859_9 PFAM histidine triad (HIT) protein K19710 - 2.7.7.53 0.00000000000000000000000000000000000000000000000000003528 194.0
YYD1_k127_1315946_0 Protein of unknown function (DUF1116) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004073 433.0
YYD1_k127_1315946_1 PFAM ABC transporter K02056 - 3.6.3.17 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001787 406.0
YYD1_k127_1315946_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000008091 253.0
YYD1_k127_1315946_3 PFAM Basic membrane lipoprotein K02058,K07335 - - 0.000000000000000000000000000000000000000000000000000000000000000000006225 250.0
YYD1_k127_1315946_4 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000001297 231.0
YYD1_k127_1315946_5 helix_turn_helix, Lux Regulon K02282 - - 0.00000000000000000000000000000000000000000000000000000004367 203.0
YYD1_k127_1315946_6 Succinyl-CoA synthetase, alpha subunit K02381 - - 0.0000000000000000000000000000000000000000000000000000006119 203.0
YYD1_k127_1315946_7 MASE1 - - - 0.00000000000000000000000000000000000000000000001574 193.0
YYD1_k127_1315946_8 Putative zincin peptidase - - - 0.00000000000000000000000002074 117.0
YYD1_k127_1319994_0 transposition - - - 0.000000000000000000000005762 111.0
YYD1_k127_1319994_2 PFAM YD repeat-containing protein - - - 0.00001005 49.0
YYD1_k127_1337911_0 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides K08281 - 3.5.1.19 0.000000000000000000000000000000000000000000000000000000000001772 214.0
YYD1_k127_1345351_0 3-demethylubiquinone-9 3-methyltransferase K04750 - - 0.000000000000000000000000000000000000000000000000000000002081 203.0
YYD1_k127_1345351_1 cellulose binding - - - 0.000000000000000000000000000000000000000009264 166.0
YYD1_k127_1345351_2 Hep Hag repeat protein - - - 0.0000000000000000000001027 104.0
YYD1_k127_1346101_0 extracellular solute-binding protein, family 1 K02012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004493 479.0
YYD1_k127_1346101_1 Ribosomal protein S1 K02945 - - 0.000000000000000000000116 100.0
YYD1_k127_1346101_2 thiamine transport K02011 - - 0.0000000000008865 76.0
YYD1_k127_1348723_0 Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions K04077 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0016465,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031,GO:1990220 - 2.663e-279 866.0
YYD1_k127_1348723_1 COG2931, RTX toxins and related Ca2 -binding proteins K20276 - - 8.345e-243 829.0
YYD1_k127_1348723_10 Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter K04078 - - 0.00000000000000000000000000000000000000000764 156.0
YYD1_k127_1348723_11 Responsible for synthesis of pseudouridine from uracil K06177 - 5.4.99.28,5.4.99.29 0.00000000000000000000000000000000000001347 149.0
YYD1_k127_1348723_12 protein N-acetylglucosaminyltransferase activity K16531 GO:0000226,GO:0000242,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022402,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0032991,GO:0034452,GO:0034464,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038 - 0.00000000003075 75.0
YYD1_k127_1348723_2 An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay K12574 - - 2.759e-241 758.0
YYD1_k127_1348723_3 Major facilitator Superfamily - - - 1.378e-200 631.0
YYD1_k127_1348723_4 aminopeptidase activity K01179,K01269 - 3.2.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003038 502.0
YYD1_k127_1348723_5 PFAM luciferase family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004207 408.0
YYD1_k127_1348723_6 Belongs to the RNA methyltransferase TrmD family K00554 GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0016772,GO:0016779,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050518,GO:0070567,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360 2.1.1.228 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001294 385.0
YYD1_k127_1348723_7 Tetratricopeptide repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007125 354.0
YYD1_k127_1348723_8 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.00000000000000000000000000000000000000000000000000000000000000000000000002315 257.0
YYD1_k127_1348723_9 phospholipase C K21302 - 3.1.3.64 0.00000000000000000000000000000000000000000000000000000000001606 220.0
YYD1_k127_1385693_0 PFAM UvrD REP helicase - - - 7.218e-218 694.0
YYD1_k127_1385693_1 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002492 607.0
YYD1_k127_1385693_2 pfam hepn - - - 0.000000000000000000000007041 104.0
YYD1_k127_1398471_0 PFAM Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 - 4.2.3.1 8.737e-249 779.0
YYD1_k127_1398471_1 histidine kinase A domain protein - - - 1.423e-234 775.0
YYD1_k127_1398471_10 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004281 286.0
YYD1_k127_1398471_11 Adenylate cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000263 254.0
YYD1_k127_1398471_12 Two component transcriptional regulator, winged helix family - - - 0.00000000000000000000000000000000000000000000000000001768 198.0
YYD1_k127_1398471_13 Polymer-forming cytoskeletal - - - 0.000000000000000000000000000000000000000000000001373 180.0
YYD1_k127_1398471_14 nUDIX hydrolase K01515,K03574,K11991 - 3.5.4.33,3.6.1.13,3.6.1.55 0.000000000000000000005928 98.0
YYD1_k127_1398471_15 Histidine kinase K02482 - 2.7.13.3 0.0000000000000000003175 100.0
YYD1_k127_1398471_16 bacterial-type flagellum-dependent cell motility - - - 0.0000000002404 72.0
YYD1_k127_1398471_17 Psort location Cytoplasmic, score - - - 0.0001926 53.0
YYD1_k127_1398471_2 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity K00819,K00821 GO:0003674,GO:0003824,GO:0004587,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009987,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050662,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 2.6.1.11,2.6.1.13,2.6.1.17 1.055e-210 659.0
YYD1_k127_1398471_3 Acetyl-CoA hydrolase/transferase N-terminal domain - - - 9.8e-208 653.0
YYD1_k127_1398471_4 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611 - 2.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001195 489.0
YYD1_k127_1398471_5 Bacterial pre-peptidase C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001357 494.0
YYD1_k127_1398471_6 Belongs to the pyruvate kinase family K00873 GO:0003674,GO:0003824,GO:0004743,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 2.7.1.40 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001483 436.0
YYD1_k127_1398471_7 SMART ATP-binding region ATPase domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 359.0
YYD1_k127_1398471_8 Belongs to the AlaDH PNT family K00259 - 1.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001568 310.0
YYD1_k127_1398471_9 spore germination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 307.0
YYD1_k127_1401131_0 hydrolase activity, hydrolyzing O-glycosyl compounds K05341,K05343 - 2.4.1.4,3.2.1.1,5.4.99.16 1.659e-257 806.0
YYD1_k127_1401131_1 PFAM alpha beta hydrolase fold - - - 0.0000000000000000002219 89.0
YYD1_k127_1403552_0 PFAM major facilitator superfamily MFS_1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009469 404.0
YYD1_k127_1403552_1 NHL repeat - - - 0.000000000000000000000000000000000000000000000000000000000000005738 230.0
YYD1_k127_1412104_0 Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine K06168 - 2.8.4.3 1.702e-204 647.0
YYD1_k127_1412104_1 Peptidase_C39 like family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004507 471.0
YYD1_k127_1412104_2 Transcriptional Coactivator p15 (PC4) - - - 0.000000000000000000000000002836 112.0
YYD1_k127_1412104_3 Ig-like domain from next to BRCA1 gene - - - 0.00000000000000000002168 97.0
YYD1_k127_1412104_4 acetyltransferase K18816 - 2.3.1.82 0.00002848 49.0
YYD1_k127_1421980_0 Belongs to the Pirin family K06911 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 317.0
YYD1_k127_1421980_1 Domain of unknown function (DUF5060) - - - 0.00000000000000000000000000000000000000000000000000000000000004756 236.0
YYD1_k127_1421980_10 Belongs to the arylamine N-acetyltransferase family - - - 0.0000003628 61.0
YYD1_k127_1421980_2 Integral membrane protein (intg_mem_TP0381) - - - 0.00000000000000000000000000000000000000000000000000000000001047 214.0
YYD1_k127_1421980_5 Nitroreductase family - - - 0.00000000000000000000000009521 117.0
YYD1_k127_1421980_6 Dodecin K09165 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000003196 106.0
YYD1_k127_1421980_7 Putative zinc- or iron-chelating domain K06940 - - 0.00000000000000000000004613 107.0
YYD1_k127_1421980_8 Acyl-transferase K00655,K00945 - 2.3.1.51,2.7.4.25 0.000000002535 59.0
YYD1_k127_1421980_9 LysM domain K03642,K03791,K22278 - 3.5.1.104 0.0000001289 62.0
YYD1_k127_142566_0 protein kinase activity - - - 0.00000000000000000000000000000000000000000007026 171.0
YYD1_k127_142566_1 56kDa selenium binding protein (SBP56) K17285 - - 0.0000001012 57.0
YYD1_k127_1444464_0 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005049 285.0
YYD1_k127_1457606_0 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 4.068e-255 807.0
YYD1_k127_1457606_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 1.538e-251 780.0
YYD1_k127_1468102_0 AAA domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002809 435.0
YYD1_k127_1468102_1 PFAM Alpha beta hydrolase fold-3 domain protein K14731 - 3.1.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000002763 248.0
YYD1_k127_1468102_2 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000001402 237.0
YYD1_k127_1468102_3 Transposase - - - 0.00000000000000000000000000000000000000000002258 169.0
YYD1_k127_1468102_4 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.00000000000000000000000000000004779 131.0
YYD1_k127_1468102_5 transcriptional regulator, LuxR family - - - 0.0000000000000000002056 100.0
YYD1_k127_1470308_0 PFAM phenylalanine histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243 570.0
YYD1_k127_1475800_0 deoxyribonuclease IV (phage-T4-induced) activity K01151 - 3.1.21.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004769 343.0
YYD1_k127_1475800_1 PFAM diacylglycerol kinase K00901 - 2.7.1.107 0.0000000000000000000000000000000000000000000006163 168.0
YYD1_k127_1475800_2 Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA K07042 - - 0.0000000000003085 70.0
YYD1_k127_1483212_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 3.795e-219 703.0
YYD1_k127_1483212_1 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001149 331.0
YYD1_k127_1483212_2 Destroys radicals which are normally produced within the cells and which are toxic to biological systems K04564 GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004784,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0044237,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748 1.15.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003721 297.0
YYD1_k127_1483212_3 EamA-like transporter family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003938 258.0
YYD1_k127_1483212_4 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.000000000000000000000000000000000000000000000000000000000000000000000497 243.0
YYD1_k127_1483212_5 Glycosyl hydrolase family 20, catalytic domain K12373 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000003357 211.0
YYD1_k127_1483212_6 membrane - - - 0.00000000000000000000000000000000000000000000000000000001152 208.0
YYD1_k127_1483212_7 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.000000000000000000000000000000000000000000000000000007948 192.0
YYD1_k127_1483212_8 hydrolase family 20, catalytic K12373 - 3.2.1.52 0.000000000000000000000000000000008412 132.0
YYD1_k127_1485091_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009271 428.0
YYD1_k127_1485091_1 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000000000000000000000000000000006211 203.0
YYD1_k127_1485091_2 - - - - 0.0000000001134 76.0
YYD1_k127_1485091_3 PFAM Branched-chain amino acid transport system permease component K10440 - - 0.000001753 60.0
YYD1_k127_1488658_0 ABC-type sugar transport system periplasmic component K10117 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001052 576.0
YYD1_k127_1488658_1 PFAM cytoplasmic peptidoglycan synthetase domain protein K11754 - 6.3.2.12,6.3.2.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006106 467.0
YYD1_k127_1488658_2 PFAM Binding-protein-dependent transport system inner membrane component K10118 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001995 394.0
YYD1_k127_1488658_3 ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner K01338 - 3.4.21.53 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002234 330.0
YYD1_k127_1488658_4 Fis family transcriptional regulator K07391 - - 0.00000000000000000001244 93.0
YYD1_k127_1494064_0 The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently K03076 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001902 569.0
YYD1_k127_1494064_1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03040 GO:0003674,GO:0003824,GO:0003899,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576 2.7.7.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 477.0
YYD1_k127_1494064_10 Belongs to the universal ribosomal protein uS9 family K02996 - - 0.0000000000000000000000000000000000000000000000000004751 186.0
YYD1_k127_1494064_11 Binds to the 23S rRNA K02876 - - 0.00000000000000000000000000000000000000000000000002952 184.0
YYD1_k127_1494064_12 Ribosomal protein L17 K02879 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000000000004097 169.0
YYD1_k127_1494064_13 Ribosomal protein L30 K02907 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000007103 85.0
YYD1_k127_1494064_14 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000001165 61.0
YYD1_k127_1494064_15 Belongs to the bacterial ribosomal protein bL36 family K02919 - - 0.0000000001513 63.0
YYD1_k127_1494064_2 TIGRFAM methionine aminopeptidase, type I K01265 - 3.4.11.18 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000338 338.0
YYD1_k127_1494064_3 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit K02986 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001615 308.0
YYD1_k127_1494064_4 Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body K02988 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000005631 258.0
YYD1_k127_1494064_5 Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism K00939 - 2.7.4.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000035 258.0
YYD1_k127_1494064_6 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.00000000000000000000000000000000000000000000000000000000000000000000004311 249.0
YYD1_k127_1494064_7 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits K02952 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022613,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000002945 201.0
YYD1_k127_1494064_8 Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome K02948 - - 0.000000000000000000000000000000000000000000000000000002234 193.0
YYD1_k127_1494064_9 This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly K02871 GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001362 188.0
YYD1_k127_1505036_0 Flavin containing amine oxidoreductase K10027 - 1.3.99.26,1.3.99.28,1.3.99.29,1.3.99.31 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000315 429.0
YYD1_k127_1505036_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001725 263.0
YYD1_k127_1505036_2 Toxic component of a toxin-antitoxin (TA) module. An RNase - - - 0.00000000000000000000000000000002563 130.0
YYD1_k127_1505036_4 phytoene synthase K02291 - 2.5.1.32,2.5.1.99 0.0007624 51.0
YYD1_k127_1506293_0 helix_turn_helix, Lux Regulon K03556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000809 547.0
YYD1_k127_1506293_1 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005406 252.0
YYD1_k127_1506293_2 - - - - 0.0000000000000000000000000157 117.0
YYD1_k127_1506293_3 - - - - 0.00000000000000697 79.0
YYD1_k127_1506293_5 Putative esterase K07017 - - 0.000000000157 66.0
YYD1_k127_1508411_0 Transcriptional activator domain - - - 1.288e-228 749.0
YYD1_k127_1508411_1 Methyltransferase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001936 324.0
YYD1_k127_1508411_2 WD40-like Beta Propeller Repeat K03641 - - 0.000000000000002523 90.0
YYD1_k127_1508411_3 Parallel beta-helix repeats - - - 0.000000000002677 80.0
YYD1_k127_1515565_0 Catalyzes the reversible phosphorylation of UMP to UDP K09903 - 2.7.4.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007542 302.0
YYD1_k127_1515565_1 - - - - 0.000000000542 70.0
YYD1_k127_1515565_2 - - - - 0.00000002314 57.0
YYD1_k127_1515565_3 Sterol carrier protein domain - - - 0.0008169 51.0
YYD1_k127_15231_0 ABC transporter substrate-binding protein PnrA-like - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000938 306.0
YYD1_k127_15231_1 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004801 301.0
YYD1_k127_15231_2 ATPases associated with a variety of cellular activities K02056 - 3.6.3.17 0.00000000000000000000000000000000000000000001163 166.0
YYD1_k127_1569730_0 Belongs to the rhamnose isomerase family K01813 - 5.3.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001754 529.0
YYD1_k127_1569730_1 Psort location Cytoplasmic, score K00848,K00879 - 2.7.1.5,2.7.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 508.0
YYD1_k127_1569730_2 Class ii aldolase K01628,K01629 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0008994,GO:0009056,GO:0016052,GO:0016829,GO:0016830,GO:0016832,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0019321,GO:0019323,GO:0042802,GO:0044238,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0071704,GO:1901575 4.1.2.17,4.1.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007593 329.0
YYD1_k127_1569730_3 Acetyltransferase (GNAT) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006541 302.0
YYD1_k127_1569730_4 acetyltransferase K00657 - 2.3.1.57 0.000000000000000000000000000000000000000000000000000000915 198.0
YYD1_k127_1569730_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000000000000000000000007854 181.0
YYD1_k127_1569730_6 DeoR C terminal sensor domain - GO:0005975,GO:0006066,GO:0006071,GO:0006355,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016052,GO:0019219,GO:0019222,GO:0019400,GO:0019405,GO:0019563,GO:0019751,GO:0031323,GO:0031326,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0046164,GO:0046174,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901575,GO:1901615,GO:1901616,GO:1903506,GO:2000112,GO:2001141 - 0.00000000000000000000000000000000000000000007305 170.0
YYD1_k127_1578537_0 PFAM peptidase, membrane zinc metallopeptidase K06973 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001487 297.0
YYD1_k127_1578537_1 beta-galactosidase activity K01190,K17624 - 3.2.1.23,3.2.1.97 0.000000000000000000000000000000005874 128.0
YYD1_k127_1607599_0 transposase activity - - - 0.000000000000000000006974 96.0
YYD1_k127_1607599_1 transposase activity - - - 0.00000000000001995 81.0
YYD1_k127_1607599_2 transposase activity - - - 0.00000006091 59.0
YYD1_k127_1608777_0 ATP-dependent transcriptional regulator K03556 - - 2.595e-201 645.0
YYD1_k127_1608777_1 Domain of unknown function (DUF4386) - - - 0.000000000000000000000000000000000000000000000009722 177.0
YYD1_k127_1608777_2 - - - - 0.000000000000000000000000002386 118.0
YYD1_k127_1608777_3 Nickel-dependent hydrogenase K00436 - 1.12.1.2 0.000000001594 59.0
YYD1_k127_1627156_0 ABC-type multidrug transport system, ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001377 355.0
YYD1_k127_1627156_1 ABC-2 family transporter protein - - - 0.000000000000002147 80.0
YYD1_k127_1643296_0 PFAM amine oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001465 592.0
YYD1_k127_1643296_1 PFAM conserved K07027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001265 427.0
YYD1_k127_1643296_2 RNA cap guanine-N2 methyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000906 355.0
YYD1_k127_1643296_3 Stage II sporulation K07315 - 3.1.3.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121 352.0
YYD1_k127_1643296_4 Phosphoribosyl transferase domain K00759 - 2.4.2.7 0.00000000000000000000000000000000000000000000000000000000000000000000009397 244.0
YYD1_k127_1643296_5 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000000000000000003965 165.0
YYD1_k127_1643296_6 WD40-like Beta Propeller Repeat K03641 - - 0.00000000000005153 85.0
YYD1_k127_1643296_7 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000008008 68.0
YYD1_k127_1676073_0 V-type ATPase 116kDa subunit family K02123 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001258 280.0
YYD1_k127_1676073_1 Produces ATP from ADP in the presence of a proton gradient across the membrane K02119 - - 0.00000000000000000000000000001643 127.0
YYD1_k127_1676073_2 ATP synthase, subunit C K02124 - - 0.000000000000007626 78.0
YYD1_k127_1676073_3 Produces ATP from ADP in the presence of a proton gradient across the membrane K02121 - - 0.0000000139 65.0
YYD1_k127_1684963_0 Beta-lactamase K01286 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000831 303.0
YYD1_k127_1684963_1 PFAM regulatory protein LuxR K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000001004 234.0
YYD1_k127_1684963_2 Alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000001203 151.0
YYD1_k127_1684963_3 Antitoxin Phd_YefM, type II toxin-antitoxin system - - - 0.00000635 55.0
YYD1_k127_1689117_0 dipeptide transport K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000644 478.0
YYD1_k127_1689117_1 Glycoside hydrolase family 3 K01207 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001721 388.0
YYD1_k127_1689117_2 Acetyltransferase (GNAT) family - - - 0.00000000000000000000001371 110.0
YYD1_k127_1689117_3 Acetyltransferase (GNAT) domain - - - 0.0000000003624 63.0
YYD1_k127_1698773_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003544 409.0
YYD1_k127_1698773_1 PFAM Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004256 278.0
YYD1_k127_1698773_3 Zinc-binding dehydrogenase - - - 0.0000002157 54.0
YYD1_k127_1710381_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 2.347e-249 797.0
YYD1_k127_1710381_1 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000689 324.0
YYD1_k127_1710381_2 Histidine kinase K01768,K02488,K17763 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65,4.6.1.1 0.000000000000000000000000000000000000000000005565 178.0
YYD1_k127_1710381_3 mRNA catabolic process K06950 - - 0.0000000000000000000000000000000000000448 151.0
YYD1_k127_1710381_4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.0007563 44.0
YYD1_k127_1717743_0 FES K10773 - 4.2.99.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001423 305.0
YYD1_k127_1717743_1 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000000000000009422 208.0
YYD1_k127_1717743_2 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.00000000000000000000000000000000000000000000000000000007343 202.0
YYD1_k127_1717743_3 L-asparaginase II K01424 - 3.5.1.1 0.00000002456 59.0
YYD1_k127_1723378_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K02574 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008572 319.0
YYD1_k127_1723378_1 PhoQ Sensor - - - 0.000000000000000000000000000000005038 148.0
YYD1_k127_1723378_2 - - - - 0.0000000000000000000000000000000141 139.0
YYD1_k127_1723378_3 4 iron, 4 sulfur cluster binding K00528,K02574,K07098 - 1.18.1.2,1.19.1.1 0.000000000000000000006939 101.0
YYD1_k127_1723378_4 hydrolases or acyltransferases (alpha beta hydrolase superfamily) - - - 0.0009163 43.0
YYD1_k127_1735446_0 Acyl-CoA dehydrogenase, C-terminal domain K00248,K00249 - 1.3.8.1,1.3.8.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005262 429.0
YYD1_k127_1735446_1 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.00000000000000000000000000000000000000000000000000001234 200.0
YYD1_k127_1735446_2 Papain family cysteine protease - - - 0.00006949 51.0
YYD1_k127_1737884_0 Periplasmic binding protein domain K02058,K10439 - - 0.000000000000000000000000000000000000000002972 165.0
YYD1_k127_1740741_0 PFAM PpiC-type peptidyl-prolyl cis-trans isomerase K03769 - 5.2.1.8 0.000000000000000000000000000000000000000000000000000000000000000001953 239.0
YYD1_k127_1740741_1 deaminated base DNA N-glycosylase activity K03648,K21929 - 3.2.2.27 0.0000000000000000000000000000000000000000000001435 175.0
YYD1_k127_1740741_3 deoxyribonuclease IV (phage-T4-induced) activity K01151 - 3.1.21.2 0.000000000000000000001488 95.0
YYD1_k127_1749300_0 alpha/beta hydrolase fold - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006517 516.0
YYD1_k127_1749300_1 PFAM AMP-dependent synthetase and ligase K00666 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 488.0
YYD1_k127_1749300_2 Thiolase, C-terminal domain K00626 - 2.3.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008635 444.0
YYD1_k127_1749300_3 PFAM AMP-dependent synthetase and ligase K00666 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007271 354.0
YYD1_k127_1749300_4 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059 - 1.1.1.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000666 311.0
YYD1_k127_1749300_5 Luciferase-like monooxygenase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004953 289.0
YYD1_k127_1749300_6 Rubredoxin-like zinc ribbon domain (DUF35_N) K07068 - - 0.0000000000000000000000000000000000007778 143.0
YYD1_k127_1749300_7 Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine K16264 - - 0.00000000000000000008351 90.0
YYD1_k127_1796022_0 PFAM glycoside hydrolase, family 3 domain protein K05349 - 3.2.1.21 1.109e-277 870.0
YYD1_k127_1796022_1 PFAM peptidase M48 Ste24p K06013 - 3.4.24.84 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000436 324.0
YYD1_k127_1796022_2 - - - - 0.0000000000000000000000000002356 116.0
YYD1_k127_1796022_4 - - - - 0.00000007157 65.0
YYD1_k127_1796022_5 Dual specificity phosphatase, catalytic domain - - - 0.00001791 49.0
YYD1_k127_1823120_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 3.005e-271 844.0
YYD1_k127_1823120_1 PFAM metal-dependent phosphohydrolase, HD sub domain K01129 - 3.1.5.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003461 590.0
YYD1_k127_1823120_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009386 266.0
YYD1_k127_1823120_3 PFAM aspartate glutamate uridylate kinase K06981 - 2.7.4.26 0.00000000000000000000000000000000000000000000000000000000000000000000000005604 259.0
YYD1_k127_1823120_4 TIGRFAM mevalonate kinase K00869 - 2.7.1.36 0.0000000000000000000000000000000000000000000000000000000000000000000000007968 254.0
YYD1_k127_1823120_5 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.0000000000000000000000000000000000000000005212 162.0
YYD1_k127_1850832_0 PFAM Fumarate lyase K01744 - 4.3.1.1 1.602e-198 626.0
YYD1_k127_1850832_1 stress-induced mitochondrial fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001996 402.0
YYD1_k127_1850832_2 PFAM peptidase S1 and S6, chymotrypsin Hap K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007587 312.0
YYD1_k127_1850832_3 Copper amine oxidase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000001314 222.0
YYD1_k127_1850832_4 Fumarase C C-terminus K01744 - 4.3.1.1 0.0004566 43.0
YYD1_k127_1855165_0 ATPases associated with a variety of cellular activities K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002679 331.0
YYD1_k127_1855165_1 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000005633 209.0
YYD1_k127_1855165_2 PFAM glycoside hydrolase family 35 K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000436 160.0
YYD1_k127_1861378_0 Transposase - - - 0.000000000000000000000000000000000000000000000000000000000000000008944 234.0
YYD1_k127_1861378_1 Transposase - - - 0.000000009909 60.0
YYD1_k127_1861378_2 Ig-like domain from next to BRCA1 gene - - - 0.0000005729 58.0
YYD1_k127_1861378_3 Metallo-beta-lactamase superfamily K06167 - 3.1.4.55 0.0000005898 53.0
YYD1_k127_1863354_0 Aldo/keto reductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005391 480.0
YYD1_k127_1863354_1 Multicopper oxidase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000039 436.0
YYD1_k127_1863354_2 transporter - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001392 344.0
YYD1_k127_1863354_3 Belongs to the HpcH HpaI aldolase family K01644,K08691 GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006107,GO:0008150,GO:0008152,GO:0009987,GO:0015977,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0043167,GO:0043169,GO:0043427,GO:0043436,GO:0043648,GO:0044237,GO:0044281,GO:0046872,GO:0047777,GO:0050083,GO:0071704 4.1.3.24,4.1.3.25,4.1.3.34 0.00000000000000000000000000000000000000000000000000000000000000000000000134 255.0
YYD1_k127_1863354_4 Isoprenylcysteine carboxyl methyltransferase - - - 0.000000000000000000001185 100.0
YYD1_k127_1866637_0 carbohydrate transport K02027,K10117,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000000003555 139.0
YYD1_k127_1866637_1 carbohydrate transport K02027,K10117,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000000000001795 130.0
YYD1_k127_1902542_0 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005838 378.0
YYD1_k127_1902542_1 Putative esterase - - - 0.000000000000000000000000000000000000000000001784 173.0
YYD1_k127_1908087_0 helix_turn_helix, Lux Regulon K03556 - - 2.297e-198 650.0
YYD1_k127_1908087_1 response regulator - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000165 267.0
YYD1_k127_1908087_2 CAAX protease self-immunity K07052 - - 0.0000000000000000000000000000000000000000000000007444 186.0
YYD1_k127_1908087_3 DNA-binding transcription factor activity - - - 0.00000000000000000000000000000000000000000004495 164.0
YYD1_k127_1908087_4 regulatory protein, LuxR - - - 0.00000000000000000002015 94.0
YYD1_k127_1908087_5 - - - - 0.00000000001378 67.0
YYD1_k127_1908087_6 - - - - 0.000000000068 68.0
YYD1_k127_1908087_7 - - - - 0.000000000533 66.0
YYD1_k127_1913414_0 PFAM Major Facilitator Superfamily K03292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002141 525.0
YYD1_k127_1913414_1 Serine/threonine phosphatases, family 2C, catalytic domain K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000004476 178.0
YYD1_k127_1913414_2 esterase K03930 - - 0.000000000000000000000000000000000000000000121 173.0
YYD1_k127_1913414_3 - - - - 0.0000000000000000000000000000000000006786 156.0
YYD1_k127_1913414_4 PFAM cyclic nucleotide-binding K10914 - - 0.000000000000001407 85.0
YYD1_k127_1924449_0 Synthesizes alpha-1,4-glucan chains using ADP-glucose K00703 - 2.4.1.21 8.561e-237 739.0
YYD1_k127_1924449_1 PFAM Integrase catalytic region K07497 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001926 287.0
YYD1_k127_1924449_2 PFAM AzlC family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000001698 236.0
YYD1_k127_1924449_3 branched-chain amino acid - - - 0.00000000000000000000000001561 112.0
YYD1_k127_1924449_4 transposase activity K07483 - - 0.000000000000006313 78.0
YYD1_k127_1924449_5 chloroplast mRNA modification K11294 - - 0.0009857 51.0
YYD1_k127_1928706_0 Fibronectin type III-like domain K05349 - 3.2.1.21 3.459e-286 889.0
YYD1_k127_1928706_1 PFAM ABC transporter related K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005105 376.0
YYD1_k127_1928706_2 HD superfamily hydrolase involved in NAD metabolism - - - 0.00000000000000000000000000000000000000000000000000000000000000000000007205 246.0
YYD1_k127_1928706_3 integral membrane protein - - - 0.00000000000000000000000000000000000000000000000000000000002535 220.0
YYD1_k127_1928706_4 NUDIX domain - - - 0.00000000000000000000000000000000000000006649 157.0
YYD1_k127_1928706_5 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000000000000000000000000000000004031 164.0
YYD1_k127_1928706_6 ABC-2 type transporter K01992 - - 0.0000000000000000000006442 109.0
YYD1_k127_1928706_7 Methyltransferase domain - - - 0.00000000000000001087 85.0
YYD1_k127_1928706_8 - - - - 0.00002035 53.0
YYD1_k127_1928706_9 Belongs to the PEP-utilizing enzyme family K01007 - 2.7.9.2 0.0002544 44.0
YYD1_k127_1938157_0 Peptidase M16C associated K06972 - - 1.859e-315 993.0
YYD1_k127_1938157_1 NB-ARC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000165 372.0
YYD1_k127_1938157_2 Ferritin-like domain K03594 - 1.16.3.1 0.0000000000000000000000000000000000000000000000000000000000000101 221.0
YYD1_k127_1938157_3 FAD binding domain in molybdopterin dehydrogenase K03519,K12529 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000001534 210.0
YYD1_k127_1938157_4 Thioesterase superfamily protein - - - 0.0000000000000000000000000000000000000000000000000319 182.0
YYD1_k127_1938157_5 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000000000000000000000000103 161.0
YYD1_k127_1938157_6 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. - - - 0.000000000000000000000000000000004502 135.0
YYD1_k127_1954291_0 AcrB/AcrD/AcrF family - - - 0.0 1242.0
YYD1_k127_1954291_1 cation efflux system protein (Heavy metal efflux pump) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001431 581.0
YYD1_k127_1954291_2 ABC transporter K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002746 288.0
YYD1_k127_1954291_3 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000001546 179.0
YYD1_k127_1954291_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000008592 90.0
YYD1_k127_1954291_5 bacterial-type flagellum-dependent cell motility - - - 0.00000000000004087 85.0
YYD1_k127_1975781_0 MFS/sugar transport protein K03292 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003196 421.0
YYD1_k127_1975781_1 Oxidoreductase family, NAD-binding Rossmann fold K00118,K13020 - 1.1.1.335,1.1.99.28 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003324 328.0
YYD1_k127_1975781_2 YdjC-like protein K03478 - 3.5.1.105 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001358 321.0
YYD1_k127_1975781_3 Uroporphyrinogen decarboxylase (URO-D) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000007999 258.0
YYD1_k127_1975781_4 GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000167 183.0
YYD1_k127_1975781_5 Anaerobic sulfatase maturase K06871 - - 0.00000000000000000000000000000000000017 145.0
YYD1_k127_1975781_6 Oxidoreductase family, NAD-binding Rossmann fold K00118,K13020 - 1.1.1.335,1.1.99.28 0.000000000000000001357 88.0
YYD1_k127_1975781_7 PFAM FGGY family of carbohydrate kinases, N-terminal domain K00854 - 2.7.1.17 0.0000000000000001001 83.0
YYD1_k127_1975781_8 Protein of unknown function (DUF2961) - - - 0.0000008214 53.0
YYD1_k127_1975781_9 Converts the aldose L-fucose into the corresponding ketose L-fuculose K01818 - 5.3.1.25,5.3.1.3 0.0002368 47.0
YYD1_k127_1982325_0 Tryptophan halogenase K21256 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002559 411.0
YYD1_k127_1982325_1 integral membrane protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001605 259.0
YYD1_k127_2009113_0 PFAM DegV family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000004642 252.0
YYD1_k127_2009113_1 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000006002 214.0
YYD1_k127_2009113_2 PFAM Isoprenylcysteine carboxyl methyltransferase - - - 0.000000000000000000000000000000000000000000000000000004735 197.0
YYD1_k127_2009113_3 tRNA wobble adenosine to inosine editing K11991 - 3.5.4.33 0.000000000000000000000000000000001297 134.0
YYD1_k127_2009113_4 Phospholipid methyltransferase - - - 0.000000000000007969 82.0
YYD1_k127_200999_0 fructose 1,6-bisphosphate 1-phosphatase activity K03841 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006094,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016043,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0022607,GO:0030388,GO:0034637,GO:0042132,GO:0042578,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046351,GO:0046364,GO:0050308,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071704,GO:0071840,GO:1901135,GO:1901576 3.1.3.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001387 486.0
YYD1_k127_200999_1 Peptidase family S58 K01266 - 3.4.11.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006532 480.0
YYD1_k127_200999_2 helix_turn _helix lactose operon repressor K02529 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 316.0
YYD1_k127_200999_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001518 295.0
YYD1_k127_200999_4 Serine threonine protein kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000003977 288.0
YYD1_k127_200999_5 Enoyl-(Acyl carrier protein) reductase K07124 - - 0.00000000000000000000000000000000000000000000000000000000000009299 222.0
YYD1_k127_200999_6 PFAM Phospholipid glycerol acyltransferase - - - 0.0000000000000000000000000000000000000000000000004492 183.0
YYD1_k127_2032583_0 Belongs to the thiolase family K00626 - 2.3.1.9 2.697e-220 691.0
YYD1_k127_2032583_1 adenosylmethionine-8-amino-7-oxononanoate transaminase activity K15372 - 2.6.1.55 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001113 496.0
YYD1_k127_2032583_2 Aminotransferase class I and II - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005413 477.0
YYD1_k127_2032583_3 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.000000000000000000000000000000000000000000000000000000000000001461 223.0
YYD1_k127_2032583_4 - - - - 0.000000000000007306 78.0
YYD1_k127_2032583_5 - - - - 0.000003768 55.0
YYD1_k127_2032758_0 Encoded by - - - 0.00000000000000000000000000000000000000000000000000000000000004734 220.0
YYD1_k127_2032758_1 Winged helix-turn helix - - - 0.000000000000000000009358 99.0
YYD1_k127_2061174_0 radical SAM domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000001666 234.0
YYD1_k127_2061174_1 Elongator protein 3, MiaB family, Radical SAM - - - 0.00000000000000000000000000000000000002918 147.0
YYD1_k127_2071213_0 Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids K01775 - 5.1.1.1 0.000000000000000000000000000000000000000000000000000000000000000001702 232.0
YYD1_k127_2071213_1 META domain - - - 0.00000000000000000000000000000000000000000000000002334 190.0
YYD1_k127_2071213_2 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.0000000000000000000000000000000000000002299 154.0
YYD1_k127_2071213_3 - - - - 0.00000000000000004241 83.0
YYD1_k127_2073226_0 MacB-like periplasmic core domain K02004 - - 9.73e-198 631.0
YYD1_k127_2073226_1 TIGRFAM sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 - - 0.0000000000000000000000000000000000000000000000000000002016 209.0
YYD1_k127_2076435_0 DEAD DEAH box helicase domain protein K06877 - - 2.639e-293 922.0
YYD1_k127_2076435_1 amino acids such as threonine, to avoid such errors, it has a posttransfer editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner K01873 - 6.1.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 391.0
YYD1_k127_2076435_2 penicillin-binding protein K05367 - 2.4.1.129 0.00001158 48.0
YYD1_k127_2079445_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 3.351e-206 653.0
YYD1_k127_2079445_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007358 420.0
YYD1_k127_2079445_2 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K05580 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000002104 262.0
YYD1_k127_2079445_3 ATP synthesis coupled electron transport K00336 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009405,GO:0010941,GO:0016020,GO:0016491,GO:0016651,GO:0030312,GO:0033668,GO:0035821,GO:0042981,GO:0043067,GO:0043069,GO:0044003,GO:0044068,GO:0044403,GO:0044419,GO:0044464,GO:0044531,GO:0044532,GO:0048037,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051536,GO:0051540,GO:0051701,GO:0051704,GO:0051817,GO:0052040,GO:0052041,GO:0052150,GO:0052248,GO:0052433,GO:0052490,GO:0055114,GO:0060548,GO:0065007,GO:0071944 1.6.5.3 0.0000000000000000000000000000000000000000000001996 176.0
YYD1_k127_2079445_4 Belongs to the complex I subunit 6 family K00339 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 1.6.5.3 0.00000000000000000000000000000000000007865 149.0
YYD1_k127_2079445_5 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000000000000005247 130.0
YYD1_k127_211708_0 Transporter K08217 - - 0.000000000000000000000000000000000000000000000000000000000000000000000007801 261.0
YYD1_k127_211708_1 phosphohistidine phosphatase, SixA K08296 - - 0.00000000000000000000000000000000000000000006281 166.0
YYD1_k127_211708_3 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567 - 2.1.1.63 0.000000000000000000000000000002069 128.0
YYD1_k127_211708_4 ABC-2 family transporter protein - - - 0.0001351 46.0
YYD1_k127_214076_0 Belongs to the 'phage' integrase family. XerC subfamily K03733 - - 0.000000000000000000000000000000000175 144.0
YYD1_k127_214076_1 Phage integrase, N-terminal SAM-like domain K03733 - - 0.0000000000000000000000007771 120.0
YYD1_k127_214076_2 domain, Protein - - - 0.00000000000001627 83.0
YYD1_k127_214076_3 TIGRFAM RHS repeat-associated core - - - 0.0000001023 62.0
YYD1_k127_214076_4 PFAM Prolyl oligopeptidase family - - - 0.0000002008 63.0
YYD1_k127_214076_5 Insecticide toxin TcdB middle/N-terminal region - - - 0.000007395 57.0
YYD1_k127_2148729_0 - - - - 0.000000000000000000000000000009213 123.0
YYD1_k127_2148729_1 - - - - 0.00000000000000000000000000001964 125.0
YYD1_k127_2148729_2 polysaccharide biosynthetic process K03183,K15256 - 2.1.1.163,2.1.1.201 0.000000001145 64.0
YYD1_k127_2149758_0 PFAM Forkhead-associated protein - - - 0.000000000000000000000000000000000000000000000005046 177.0
YYD1_k127_2149758_1 Tyrosine phosphatase family - - - 0.000000000000000000000001314 109.0
YYD1_k127_2158360_0 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates K03046 GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234 2.7.7.6 7.893e-309 956.0
YYD1_k127_2158360_1 protein histidine kinase activity K02484,K07636,K07642 GO:0000155,GO:0000160,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0004721,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016036,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0016787,GO:0016788,GO:0016791,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0023014,GO:0023052,GO:0031224,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0035556,GO:0036211,GO:0042578,GO:0042594,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071496,GO:0071704,GO:0071944,GO:0140096,GO:1901564 2.7.13.3 1.992e-274 882.0
YYD1_k127_2158360_2 Glyoxalase-like domain - - - 0.0000000000000000000000000000000000009195 148.0
YYD1_k127_2158360_3 Phosphate acyltransferases K00655,K00945 - 2.3.1.51,2.7.4.25 0.000000000000000000000000000001273 129.0
YYD1_k127_2158360_4 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.00000000000000000000000000002523 126.0
YYD1_k127_2158360_5 Phosphate acyltransferases K00655 - 2.3.1.51 0.000000000000000000000001181 113.0
YYD1_k127_2158360_6 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.0000000000000000000001375 106.0
YYD1_k127_2160354_0 histidine kinase A domain protein - - - 0.000000000000000000000000000000000000000000000004674 189.0
YYD1_k127_2160354_1 Thioesterase superfamily - - - 0.000000000000000000000000001573 114.0
YYD1_k127_2176695_0 PFAM Bacterial extracellular solute-binding K17318 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000759 490.0
YYD1_k127_2176695_1 Binding-protein-dependent transport system inner membrane component K17319 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006018 401.0
YYD1_k127_2176695_2 PFAM glycoside hydrolase, family 4 K07406 - 3.2.1.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005024 297.0
YYD1_k127_2176695_3 PFAM binding-protein-dependent transport systems inner membrane component K17320 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001037 284.0
YYD1_k127_2189195_0 CO dehydrogenase/acetyl-CoA synthase delta subunit K00197 - 2.1.1.245 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001256 338.0
YYD1_k127_2189195_1 CO dehydrogenase/acetyl-CoA synthase delta subunit - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008719 284.0
YYD1_k127_2193452_0 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002859 281.0
YYD1_k127_2193452_1 Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate K01007 - 2.7.9.2 0.0000000000000000000004966 96.0
YYD1_k127_2193452_2 Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP K08591 - 2.3.1.15 0.0000000000000000000005145 106.0
YYD1_k127_2237320_0 protein kinase activity - - - 0.00000000000000000004592 94.0
YYD1_k127_2237320_2 protein secretion by the type VII secretion system - - - 0.000000707 55.0
YYD1_k127_2258080_0 PFAM Alcohol dehydrogenase zinc-binding domain protein - - - 7.752e-288 900.0
YYD1_k127_2258080_1 Heparinase II/III-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002749 306.0
YYD1_k127_2258080_3 Binds directly to 16S ribosomal RNA K02968 - - 0.00000000000000000000006187 100.0
YYD1_k127_2280091_0 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00239 - 1.3.5.1,1.3.5.4 1.082e-302 936.0
YYD1_k127_2280091_1 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines K01476,K01480 GO:0003674,GO:0003824,GO:0004053,GO:0006082,GO:0006520,GO:0006525,GO:0006807,GO:0008150,GO:0008152,GO:0009064,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0071704,GO:1901564,GO:1901605 3.5.3.1,3.5.3.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003619 407.0
YYD1_k127_2280091_10 WD domain, G-beta repeat - - - 0.00000001262 67.0
YYD1_k127_2280091_11 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00242 - - 0.0001619 49.0
YYD1_k127_2280091_2 Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family K00240 - 1.3.5.1,1.3.5.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000472 342.0
YYD1_k127_2280091_3 TIGRFAM cysteine desulfurase family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001431 273.0
YYD1_k127_2280091_4 Cytochrome b/b6/petB K00412,K03888 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001038 259.0
YYD1_k127_2280091_5 Cytochrome b subunit of the bc complex K00412 - - 0.000000000000000000000000004291 125.0
YYD1_k127_2280091_6 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K07025,K20866 - 3.1.3.10 0.0000000000000000000000001232 113.0
YYD1_k127_2280091_7 PFAM Rieske 2Fe-2S domain K03886 - - 0.000000000000000000000008988 106.0
YYD1_k127_2280091_8 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.0000000000003162 71.0
YYD1_k127_2280091_9 TIGRFAM Succinate dehydrogenase, cytochrome b556 subunit K00241 - - 0.00000000001807 69.0
YYD1_k127_2280561_0 Transposase K07492 - - 0.000000000000000000000000000000000000000000000000000000000000000000003908 243.0
YYD1_k127_228379_0 Activator of Hsp90 ATPase homolog 1-like protein - - - 0.000000000000000000000000000000000000000000000000005025 184.0
YYD1_k127_228379_1 CoA binding domain K06929 - - 0.00000000000000000000000000000000000007418 147.0
YYD1_k127_228379_2 Helix-turn-helix type 11 domain protein K13572 - - 0.0000000000000000000000000000003856 127.0
YYD1_k127_228379_3 Flavodoxin domain K00230 - 1.3.5.3 0.0000000000000000000004032 104.0
YYD1_k127_2284544_0 transferase activity, transferring glycosyl groups K09118,K13693,K21349 - 2.4.1.266,2.4.1.268 2.433e-216 689.0
YYD1_k127_2284544_1 Zinc-binding dehydrogenase K22231 - - 2.549e-198 623.0
YYD1_k127_2284544_2 hydrolase activity, hydrolyzing O-glycosyl compounds K00690 - 2.4.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002228 606.0
YYD1_k127_2284544_3 Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001676 491.0
YYD1_k127_2284544_4 transferase activity, transferring glycosyl groups K21369 - 2.4.1.270 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006633 484.0
YYD1_k127_2284544_5 Bacterial extracellular solute-binding proteins, family 5 Middle K02035 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002993 348.0
YYD1_k127_2284544_6 TIM barrel - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003122 292.0
YYD1_k127_2284544_7 Creatinine amidohydrolase K01470,K22232 - 3.5.2.10 0.000000000000000000000000000000000000000000000000000000000000000000000000000000004416 273.0
YYD1_k127_2284544_8 Belongs to the phosphoglycerate mutase family K15634 - 5.4.2.12 0.00000000000000000000000000000000000000000000000000000000000001325 220.0
YYD1_k127_2284544_9 Peptidase MA superfamily - - - 0.00000000000000000000000000000000000000003855 169.0
YYD1_k127_2304_0 Methionine synthase B12-binding module cap domain protein K00548,K15023 - 2.1.1.13,2.1.1.258 1.229e-300 933.0
YYD1_k127_2310276_0 PFAM Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 1.107e-204 651.0
YYD1_k127_2310276_1 ABC transporter transmembrane region K06147 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001325 587.0
YYD1_k127_2310276_10 Transcriptional - - - 0.00000000000000000000000000004541 120.0
YYD1_k127_2310276_11 PFAM pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 - - 0.0000000000000000000000000000788 122.0
YYD1_k127_2310276_12 PFAM zinc finger, SWIM domain protein - - - 0.000000000000000000000000001658 113.0
YYD1_k127_2310276_2 ABC transporter transmembrane region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001925 477.0
YYD1_k127_2310276_3 saccharopine dehydrogenase activity K00290 - 1.5.1.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 375.0
YYD1_k127_2310276_4 serine-type peptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003934 379.0
YYD1_k127_2310276_5 Saccharopine dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000297 340.0
YYD1_k127_2310276_6 Phospholipid methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000001943 200.0
YYD1_k127_2310276_7 Transglutaminase-like superfamily - - - 0.00000000000000000000000000000000000000000003764 168.0
YYD1_k127_2310276_8 Pyridoxamine 5'-phosphate oxidase - - - 0.00000000000000000000000000000000000000001425 157.0
YYD1_k127_2310276_9 Specifically methylates the ribose of guanosine 2251 in 23S rRNA K03218 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.185 0.00000000000000000000000000000000000317 141.0
YYD1_k127_2315364_0 Resolvase domain - - - 3.21e-230 734.0
YYD1_k127_2315364_1 Winged helix-turn helix - - - 0.0000000000000000000000000000000003712 139.0
YYD1_k127_2315364_2 Family of unknown function (DUF5372) - - - 0.000000000000000001844 88.0
YYD1_k127_2329191_0 ATP-dependent transcriptional regulator K03556 - - 0.000000000000000000000000000000000000000000001233 185.0
YYD1_k127_234127_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 6.629e-314 989.0
YYD1_k127_234127_1 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 5.722e-284 880.0
YYD1_k127_234127_2 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 564.0
YYD1_k127_23543_0 calcium- and calmodulin-responsive adenylate cyclase activity - - - 0.0002288 53.0
YYD1_k127_2361718_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 580.0
YYD1_k127_2361718_1 Belongs to the GPI family K01810,K13810 - 2.2.1.2,5.3.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901 481.0
YYD1_k127_2361718_2 NapC/NirT cytochrome c family, N-terminal region K15876 - - 0.00000000000000000000000000000000000000000000000000000000000000000000001611 244.0
YYD1_k127_2361718_3 Phosphoribosyl transferase domain K07101 - - 0.00000000000000000000000000000000000000000000000000000000000000000000005516 248.0
YYD1_k127_2361718_4 Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate K00615 - 2.2.1.1 0.000000000000000000000000000000000000000000000000000000000001183 218.0
YYD1_k127_2361718_5 sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000001867 181.0
YYD1_k127_2361718_6 TM2 domain - - - 0.00000000000000000000000000000000000000000003226 162.0
YYD1_k127_2361718_7 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs K06173 GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360 5.4.99.12 0.000000000000001215 83.0
YYD1_k127_2363157_0 PhoQ Sensor K07682 GO:0000166,GO:0000287,GO:0001666,GO:0003032,GO:0003674,GO:0003824,GO:0004672,GO:0004673,GO:0005488,GO:0005509,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0009593,GO:0009628,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016775,GO:0017076,GO:0018106,GO:0018193,GO:0018202,GO:0019538,GO:0019825,GO:0019826,GO:0020037,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036211,GO:0036293,GO:0040007,GO:0042165,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0046777,GO:0046872,GO:0046906,GO:0048037,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0070025,GO:0070026,GO:0070482,GO:0070483,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009106 402.0
YYD1_k127_2363157_1 Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003862 250.0
YYD1_k127_2365598_0 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001856 355.0
YYD1_k127_2365598_1 Phosphoglycerate mutase family K01834 - 5.4.2.11 0.00000000000000000000000000001132 126.0
YYD1_k127_2373395_0 Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis K00943 - 2.7.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000001079 249.0
YYD1_k127_2373395_1 Essential for recycling GMP and indirectly, cGMP K00942 - 2.7.4.8 0.000000000000000000000000000000000000000000000000000000000000000000124 237.0
YYD1_k127_2373395_2 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000002915 209.0
YYD1_k127_2373395_3 PFAM single-stranded nucleic acid binding R3H domain protein - - - 0.000000000000000000000000000000000000000000000000000001801 195.0
YYD1_k127_2373395_4 Putative regulatory protein - - - 0.00000000000000000000000000000000000000000000000009813 180.0
YYD1_k127_2381179_0 Creatinase/Prolidase N-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005522 526.0
YYD1_k127_2381179_1 Adenylyl- / guanylyl cyclase, catalytic domain K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004612 447.0
YYD1_k127_2381179_2 Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family K04088,K06897 - 2.5.1.105 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000346 302.0
YYD1_k127_2381179_3 - - - - 0.00000000000002248 85.0
YYD1_k127_2388795_0 Cytochrome c - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001536 403.0
YYD1_k127_2388795_1 PFAM ABC transporter related K02193 - 3.6.3.41 0.000000000000000000000000000000000000000000000000000000000000000000000000005098 255.0
YYD1_k127_2388795_2 PFAM Cytochrome C assembly protein K02198 - - 0.0000000000000000000000000000000000000000000000000000000000000000000006226 241.0
YYD1_k127_2388795_3 subunit of a heme lyase K02200 - - 0.0000000000000000000000000000000000000004703 153.0
YYD1_k127_2388795_4 alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen K02199 - - 0.0000000000000000000000000000000002553 139.0
YYD1_k127_2388795_5 zinc-ribbon domain - - - 0.0000000000000000000000000000003028 128.0
YYD1_k127_2398738_0 PFAM glycosyl transferase group 1 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001582 536.0
YYD1_k127_2398738_1 PFAM major facilitator superfamily MFS_1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002855 407.0
YYD1_k127_2398738_2 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001344 331.0
YYD1_k127_2398738_3 Heparinase II/III-like protein - - - 0.0000000000000000000000000000000000000000395 161.0
YYD1_k127_2398738_4 AI-2E family transporter - - - 0.0000000000000000000000000003975 120.0
YYD1_k127_2398738_5 AI-2E family transporter - - - 0.00000000000000000002825 103.0
YYD1_k127_2399221_0 Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family - - - 0.000000000000000000000000001145 130.0
YYD1_k127_2414575_0 Cysteine-rich secretory protein family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007182 517.0
YYD1_k127_2414575_1 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 0.0000000000000000000000000000000000000000000000000000000000000000000000002141 254.0
YYD1_k127_2414575_2 Sodium bile acid symporter family protein K03453 - - 0.000000000000000000000000000000000000000000000000000000000002197 220.0
YYD1_k127_2414575_3 Pectate lyase K01728 - 4.2.2.2 0.000000000000000000000000000000000000000000000004012 177.0
YYD1_k127_2414575_4 glycoside hydrolase, family K07273 - - 0.000000000000000000000000000000000000006242 155.0
YYD1_k127_2419526_0 TIGRFAM ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537,K01539 - 3.6.3.8,3.6.3.9 1.379e-260 834.0
YYD1_k127_2419526_1 Putative NAD(P)-binding K03499 - - 0.000000000000000000000000000000000000000000000000000000000000000000004694 241.0
YYD1_k127_2419526_2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain - - - 0.000000000000000000000000000000000000000000000000000000000006164 216.0
YYD1_k127_2419526_3 Amino acid permease - - - 0.00000000000000000000003085 115.0
YYD1_k127_2419526_4 Major Facilitator Superfamily K08177 - - 0.00000001502 58.0
YYD1_k127_2458379_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 466.0
YYD1_k127_2458379_1 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000353 300.0
YYD1_k127_2458379_2 Trimethylamine methyltransferase K14083 - 2.1.1.250 0.00000000000000000000000000000000000000000002571 170.0
YYD1_k127_2458379_4 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family K02005 - - 0.0000003048 62.0
YYD1_k127_2487355_0 PFAM glycoside hydrolase family 29 (alpha-L-fucosidase) K01206 - 3.2.1.51 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003578 450.0
YYD1_k127_2487355_1 Major facilitator superfamily - - - 0.0000000000004137 81.0
YYD1_k127_2489120_0 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02113 - - 0.00000000000000000000000000000000000000000000000000000000001371 211.0
YYD1_k127_2489120_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045263,GO:0045264,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000000000000000000000000000000006733 167.0
YYD1_k127_2489159_0 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000169 339.0
YYD1_k127_2489159_1 Type IV pilus biogenesis stability protein PilW - - - 0.0000000000000000000000000000000002383 138.0
YYD1_k127_2489159_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000005729 126.0
YYD1_k127_2493450_0 Beta-ketoacyl synthase, C-terminal domain K09458 - 2.3.1.179 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001464 510.0
YYD1_k127_2493450_1 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids K00648 - 2.3.1.180 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002951 400.0
YYD1_k127_2493450_2 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005797 365.0
YYD1_k127_2493450_3 Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase K02356 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000007851 288.0
YYD1_k127_2493450_4 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000000000003005 167.0
YYD1_k127_2536379_0 Protein of unknown function (DUF418) K07148 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001583 371.0
YYD1_k127_2536379_1 Hep Hag repeat protein - - - 0.0000000000000000008563 100.0
YYD1_k127_2536379_2 Belongs to the thiolase family K00626 GO:0003674,GO:0003824,GO:0003985,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006066,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016407,GO:0016408,GO:0016453,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046165,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:0097384,GO:1901360,GO:1901362,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653 2.3.1.9 0.0000000000004961 68.0
YYD1_k127_2536379_3 - - - - 0.000000002268 61.0
YYD1_k127_2548188_0 heat shock protein binding - - - 0.000000000000000000000000000000000000000000000001645 183.0
YYD1_k127_2603526_0 lipid kinase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002219 259.0
YYD1_k127_2603526_1 phosphatidate phosphatase activity K19302 - 3.6.1.27 0.000000000000000000000000000000000000000000000000000000000000002627 226.0
YYD1_k127_2614393_0 ATPase AAA-2 domain protein K03696 - - 0.0 1241.0
YYD1_k127_2614393_1 COGs COG4591 ABC-type transport system involved in lipoprotein release permease component K02004 - - 4.78e-213 687.0
YYD1_k127_2614393_10 - - - - 0.00000000000000000000000000000000000000000000000000001434 197.0
YYD1_k127_2614393_11 Exonuclease - - - 0.0000000000000000000000000000000000000000000000000002645 190.0
YYD1_k127_2614393_12 - - - - 0.0000000000000000000000000000000000000005541 154.0
YYD1_k127_2614393_14 PFAM regulatory protein, MerR - - - 0.000000000000000000000000000000005987 135.0
YYD1_k127_2614393_2 DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function K04485 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 503.0
YYD1_k127_2614393_3 PFAM PUCC protein K08226 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002406 421.0
YYD1_k127_2614393_4 Peptidase family S58 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003423 376.0
YYD1_k127_2614393_5 Ribosomal protein S1 K02945 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001614 360.0
YYD1_k127_2614393_6 Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001694 331.0
YYD1_k127_2614393_7 PFAM ABC transporter related K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001071 308.0
YYD1_k127_2614393_8 ABC transporter related K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002349 277.0
YYD1_k127_2614393_9 TIGRFAM DNA polymerase III, delta' subunit K02340 - 2.7.7.7 0.0000000000000000000000000000000000000000000000000000000006757 215.0
YYD1_k127_2624475_0 Putative modulator of DNA gyrase K03568 - - 2.51e-232 727.0
YYD1_k127_2624475_1 metallopeptidase activity - - - 3.203e-194 615.0
YYD1_k127_2624475_2 activity, protein serine threonine kinase activity, protein-tyrosine kinase activity, ATP binding, regulation of transcription, DNA-dependent, protein amino acid phosphorylation - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 473.0
YYD1_k127_2624475_3 RNA methylase K07446 GO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363 2.1.1.213 0.0000000000000000000000000000000000000000001563 163.0
YYD1_k127_2624475_4 FR47-like protein - - - 0.000000000000000000000000004946 123.0
YYD1_k127_2624475_5 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000001353 104.0
YYD1_k127_2624475_6 Protein of unknown function (DUF1706) - - - 0.000000000000000000001603 101.0
YYD1_k127_2624475_7 DNA binding - - - 0.000000000000000000001626 99.0
YYD1_k127_2660176_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0 1118.0
YYD1_k127_2660176_1 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 - 1.1.1.42 5.553e-224 700.0
YYD1_k127_2660176_2 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002588 336.0
YYD1_k127_2660176_3 Catechol dioxygenase N terminus K03381 - 1.13.11.1 0.000000000000000000000000000000000000000000000000005357 189.0
YYD1_k127_2664090_0 Binding-protein-dependent transport system inner membrane component K02025,K05814 - - 0.0000000000000000000000000000000000000000000000000000000000001697 226.0
YYD1_k127_2664090_1 PFAM binding-protein-dependent transport systems inner membrane component K05815 - - 0.000000005469 64.0
YYD1_k127_2664090_2 ABC transporter, solute-binding protein K02027 - - 0.000008418 55.0
YYD1_k127_2667405_0 Belongs to the amidase family K02433 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003124 526.0
YYD1_k127_2667405_1 Glucose / Sorbosone dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006742 441.0
YYD1_k127_2667405_10 Acetyltransferase (GNAT) domain - - - 0.000000000000000000000000000003557 126.0
YYD1_k127_2667405_11 Haloacid dehalogenase-like hydrolase K07025 - - 0.0000000000000000006766 96.0
YYD1_k127_2667405_2 PFAM peptidase M1, membrane alanine aminopeptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000005178 284.0
YYD1_k127_2667405_3 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000003165 250.0
YYD1_k127_2667405_4 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000005242 220.0
YYD1_k127_2667405_5 PFAM Acetyltransferase (GNAT) family K03824 - - 0.000000000000000000000000000000000000000000000000000001486 197.0
YYD1_k127_2667405_6 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000001871 156.0
YYD1_k127_2667405_7 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000005836 147.0
YYD1_k127_2667405_8 DNA polymerase beta domain protein region K07076 - - 0.0000000000000000000000000000000008696 134.0
YYD1_k127_2667405_9 PFAM Rhodanese domain protein - - - 0.000000000000000000000000000000206 124.0
YYD1_k127_2679160_0 PFAM binding-protein-dependent transport systems inner membrane component K02025,K05814,K10118,K10233,K15771,K17245 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001031 377.0
YYD1_k127_2679160_1 glycerophosphodiester transmembrane transport K17246 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001839 309.0
YYD1_k127_2679160_2 carbohydrate transport K02027,K17244 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006338 304.0
YYD1_k127_2685765_0 domain, Protein - - - 0.000000000002266 74.0
YYD1_k127_2690266_0 Glycosyl Hydrolase Family 88 K15532 - 3.2.1.172 0.00000000000000000000000000000000000000000000000000000000000008006 219.0
YYD1_k127_2690266_1 PFAM glycoside hydrolase, family 4 K07406 - 3.2.1.22 0.0000000000000000000000000000000000000000000000000000000000532 211.0
YYD1_k127_2701474_0 Hydantoinase B/oxoprolinase K01474 - 3.5.2.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003841 606.0
YYD1_k127_2703686_0 thiosulfate sulfurtransferase activity K01011 - 2.8.1.1,2.8.1.2 1.519e-210 668.0
YYD1_k127_2703686_1 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology - - - 5.447e-204 645.0
YYD1_k127_2703686_2 thiosulfate sulfurtransferase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001188 536.0
YYD1_k127_2703686_3 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K01838 - 5.4.2.6 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 299.0
YYD1_k127_2703686_4 PFAM glycoside hydrolase family 65 central catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000002084 257.0
YYD1_k127_2703686_5 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.0000000000000000000000000006076 116.0
YYD1_k127_2703686_6 Cytochrome b/b6/petB - - - 0.00000000008752 65.0
YYD1_k127_2707878_0 DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity K03581 - 3.1.11.5 7.192e-234 745.0
YYD1_k127_2707878_1 Belongs to the RtcB family K14415 - 6.5.1.3 1.91e-231 724.0
YYD1_k127_2707878_10 PFAM Forkhead-associated protein - - - 0.000000000000000000000000000003286 124.0
YYD1_k127_2707878_12 Glucose / Sorbosone dehydrogenase - - - 0.000000000000000005235 84.0
YYD1_k127_2707878_2 PFAM ABC transporter related K06158 - - 1.659e-208 668.0
YYD1_k127_2707878_3 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007802 449.0
YYD1_k127_2707878_4 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002229 443.0
YYD1_k127_2707878_5 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000163 403.0
YYD1_k127_2707878_7 PFAM Stage V sporulation protein S K06416 - - 0.000000000000000000000000000000002537 130.0
YYD1_k127_2707878_8 Inner membrane component of T3SS, cytoplasmic domain - - - 0.000000000000000000000000000001013 131.0
YYD1_k127_2707878_9 Archease protein family (MTH1598/TM1083) - - - 0.000000000000000000000000000001694 126.0
YYD1_k127_2708800_0 N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity K00821,K05830,K09251 - 2.6.1.11,2.6.1.17,2.6.1.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003948 547.0
YYD1_k127_2708800_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065,K13252 - 2.1.3.3,2.1.3.6,2.1.3.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001751 500.0
YYD1_k127_2708800_2 Porphyromonas-type peptidyl-arginine deiminase K10536 - 3.5.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124 481.0
YYD1_k127_2708800_3 COG0515 Serine threonine protein K12132 - 2.7.11.1 0.0000000000000000000000008695 107.0
YYD1_k127_2717402_0 Amino-transferase class IV K03342 - 2.6.1.85,4.1.3.38 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005334 609.0
YYD1_k127_2717402_1 PFAM FecR protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000525 506.0
YYD1_k127_2717402_2 Haloacid dehalogenase-like hydrolase K07025 - - 0.000000000000000000000000000000000000000000000000000000000000000002193 233.0
YYD1_k127_2717402_3 Integral membrane protein (intg_mem_TP0381) - - - 0.00000000000000000000000000000000000000000000000000000000000000002274 232.0
YYD1_k127_2717402_5 - - - - 0.000009229 49.0
YYD1_k127_2742872_0 Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) K01925 - 6.3.2.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001091 556.0
YYD1_k127_2742872_1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan K01000 - 2.7.8.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002535 429.0
YYD1_k127_2742872_2 Belongs to the MurCDEF family K01924 - 6.3.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001037 434.0
YYD1_k127_2742872_3 Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) K02563 - 2.4.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006234 422.0
YYD1_k127_2742872_4 Cell cycle protein K03588 - - 0.00000000000000000000000000000000000000000000000000000000000000000000008122 255.0
YYD1_k127_2742872_5 Cell wall formation K00075 - 1.3.1.98 0.00000000000000000000000000000000000000000000000000000000000000001957 233.0
YYD1_k127_2742872_6 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.0000000000000000000000000000000000000000000005179 169.0
YYD1_k127_2761345_0 Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain K04042 - 2.3.1.157,2.7.7.23 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005498 586.0
YYD1_k127_2761345_1 CBS domain containing protein K03699 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000005663 268.0
YYD1_k127_2761345_2 This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis K01489 - 3.5.4.5 0.0000000000000000000000000000000000000000000000005954 177.0
YYD1_k127_2761345_3 Domain of unknown function (DUF389) - - - 0.00000000000000000000009216 104.0
YYD1_k127_2762416_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007499 589.0
YYD1_k127_2784569_0 PFAM ABC transporter transmembrane region K11085 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001064 592.0
YYD1_k127_2784569_1 introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX K03404,K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001017 516.0
YYD1_k127_2784569_10 Carboxymuconolactone decarboxylase family K01607 - 4.1.1.44 0.00008444 52.0
YYD1_k127_2784569_11 gluconokinase activity - - - 0.0002417 50.0
YYD1_k127_2784569_12 Belongs to the peptidase M50B family - - - 0.0002693 50.0
YYD1_k127_2784569_2 Phytoene dehydrogenase K15745 - 1.3.99.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004595 416.0
YYD1_k127_2784569_3 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004662 400.0
YYD1_k127_2784569_4 PFAM DNA methylase N-4 N-6 K00571,K07316 - 2.1.1.72 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000006347 296.0
YYD1_k127_2784569_5 DGC domain - - - 0.000000000000000000000000000000000000000001003 162.0
YYD1_k127_2784569_6 Sigma-70, region 4 K03088 - - 0.0000000000000000000000000006103 121.0
YYD1_k127_2784569_7 DUF35 OB-fold domain, acyl-CoA-associated K07068 - - 0.000000002194 60.0
YYD1_k127_2784569_8 cyclic 2,3-diphosphoglycerate synthetase activity - - - 0.000000002561 58.0
YYD1_k127_2784569_9 SPTR Transposase, IS4 family protein - - - 0.0000005215 51.0
YYD1_k127_2785617_0 PFAM Prolyl oligopeptidase family - - - 1.233e-260 817.0
YYD1_k127_2785617_1 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000000000000000000000000000000003422 224.0
YYD1_k127_2785617_2 Putative auto-transporter adhesin, head GIN domain - - - 0.0000000000000000000000000000000000000000000000005975 184.0
YYD1_k127_2785617_3 CAAX protease self-immunity - - - 0.00000000000000000000000000003366 127.0
YYD1_k127_2785617_4 - - - - 0.00000000549 62.0
YYD1_k127_2785617_5 response regulator - - - 0.000000009807 65.0
YYD1_k127_2789077_0 Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA) K03655 - 3.6.4.12 4.049e-281 895.0
YYD1_k127_2789077_1 Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate K00954 - 2.7.7.3 0.0000000000000000000000000000000000000000000000000000000000000000000004047 245.0
YYD1_k127_2789077_2 Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0) - - - 0.00000000000000000000000000000000000000000000000000000003167 201.0
YYD1_k127_2789077_3 DNA-binding transcription factor activity K03892 - - 0.000000000000000000000000000000002436 134.0
YYD1_k127_2789077_4 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.0000000000000000000000001369 107.0
YYD1_k127_2790903_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000007592 201.0
YYD1_k127_2790903_2 glyoxalase III activity - - - 0.0000000000000005081 83.0
YYD1_k127_2790903_3 - - - - 0.00000000000002418 80.0
YYD1_k127_2790903_4 Polyketide cyclase / dehydrase and lipid transport - - - 0.00002848 47.0
YYD1_k127_2792426_0 Glycerophosphodiester phosphodiesterase - - - 0.00000000000000000000000000000000000000000000000000006593 204.0
YYD1_k127_2796848_0 Glycosyltransferase like family 2 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001348 259.0
YYD1_k127_2796848_1 -O-antigen - - - 0.0000000000000000000000000000000005469 144.0
YYD1_k127_2796848_2 Protein of unknown function DUF115 - - - 0.000000000000000000000000000002506 120.0
YYD1_k127_2812610_0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K03388,K12527 - 1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,1.97.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007353 612.0
YYD1_k127_2812610_1 Product type r regulator - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000006677 256.0
YYD1_k127_2812610_2 Transcriptional regulatory protein, C terminal K07667 - - 0.000000000000000000000000000000000000000000000000000000007687 207.0
YYD1_k127_2812610_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000001331 200.0
YYD1_k127_2812610_4 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) - - - 0.000000000000000000000000000000000000000000006381 181.0
YYD1_k127_2812610_5 PFAM HD domain - - - 0.00000000000000000000000000003063 136.0
YYD1_k127_2812610_6 protein histidine kinase activity - - - 0.00000000000000000000000002557 126.0
YYD1_k127_2818959_0 Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000184 283.0
YYD1_k127_2818959_1 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.00000005072 57.0
YYD1_k127_2832697_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 9.803e-266 827.0
YYD1_k127_2832697_1 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005221 494.0
YYD1_k127_2832697_2 PFAM Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K00335,K05587 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008824 458.0
YYD1_k127_2832697_3 Major Facilitator Superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004444 416.0
YYD1_k127_2832697_4 Rubrerythrin - - - 0.0000000000000000000000000002057 120.0
YYD1_k127_2832697_5 Sugar (and other) transporter - - - 0.0000000000000000009324 87.0
YYD1_k127_2833524_0 Heat shock 70 kDa protein K04043 - - 1.168e-274 854.0
YYD1_k127_2833524_1 SMART Elongator protein 3 MiaB NifB - - - 2.609e-269 838.0
YYD1_k127_2833524_10 PFAM O-Antigen - - - 0.00004539 56.0
YYD1_k127_2833524_11 DoxX K15977 - - 0.0009726 42.0
YYD1_k127_2833524_2 PFAM sugar transferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004098 434.0
YYD1_k127_2833524_3 PFAM Glyoxalase bleomycin resistance protein dioxygenase K07104 - 1.13.11.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009388 357.0
YYD1_k127_2833524_4 EamA-like transporter family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007831 308.0
YYD1_k127_2833524_5 Histidinol-phosphate phosphatase family protein K03273 - 3.1.3.82,3.1.3.83 0.00000000000000000000000000000000000000000000000000000000000000003299 228.0
YYD1_k127_2833524_6 Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate K03271 - 5.3.1.28 0.000000000000000000000000000000000000000000000000000000000000096 221.0
YYD1_k127_2833524_7 PFAM regulatory protein TetR - - - 0.000000000000000000000000000000000000363 147.0
YYD1_k127_2833524_9 NAD(P)H-binding - - - 0.0000000817 54.0
YYD1_k127_2835202_0 Belongs to the 'phage' integrase family K04763 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001057 403.0
YYD1_k127_2835202_1 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 327.0
YYD1_k127_2835202_2 TIGRFAM metal dependent phophohydrolase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003699 299.0
YYD1_k127_2835202_3 DUF218 domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000007485 257.0
YYD1_k127_2835202_4 organic phosphonate transmembrane transporter activity K02042 - - 0.00000000000000000000000000000000000000000000004427 190.0
YYD1_k127_2835202_5 Phosphonate ABC transporter K02044 - - 0.0000000004742 66.0
YYD1_k127_2849189_0 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 524.0
YYD1_k127_2849189_1 ABC-type multidrug transport system ATPase component K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 357.0
YYD1_k127_2849189_2 CAAX protease self-immunity - - - 0.000000000000000000000000000000000000001305 158.0
YYD1_k127_2849189_3 - K01992 - - 0.000000000004022 77.0
YYD1_k127_2849189_4 RNA recognition motif - - - 0.0005997 43.0
YYD1_k127_2884287_0 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 347.0
YYD1_k127_2884287_1 Protein of unknown function with PCYCGC motif - - - 0.0000000000000000000000001514 111.0
YYD1_k127_2884287_2 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 0.0000000000000000000004997 100.0
YYD1_k127_2884287_3 Heme copper-type cytochrome quinol oxidases, subunit 2 K02275 - 1.9.3.1 0.000000001467 70.0
YYD1_k127_2884287_4 Iron permease FTR1 family K07243 - - 0.000000103 64.0
YYD1_k127_2890357_0 TIGRFAM cysteine desulfurase family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003112 555.0
YYD1_k127_2890357_1 Spermine/spermidine synthase domain K00797 - 2.5.1.16 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001234 429.0
YYD1_k127_2890357_2 Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins K00573 - 2.1.1.77 0.0000000000000000000000000000000000000000000000000000000000000004147 229.0
YYD1_k127_2890357_3 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000000000000000000000000000002735 222.0
YYD1_k127_2890357_4 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000001811 211.0
YYD1_k127_2890357_5 LVIVD repeat - - - 0.0000000000000000000000000000000000000000001724 177.0
YYD1_k127_2890357_6 TIGRFAM cysteine desulfurase family protein - - - 0.00000004475 55.0
YYD1_k127_2892468_0 Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins K03798 - - 6.275e-308 953.0
YYD1_k127_2892468_1 Aminomethyltransferase folate-binding domain K00605 - 2.1.2.10 0.0000000000000000000000006203 113.0
YYD1_k127_2894184_0 peptidase dimerisation domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001394 555.0
YYD1_k127_2894184_1 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001549 383.0
YYD1_k127_2894184_2 Protein of unknown function (DUF1385) K09153 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000571 335.0
YYD1_k127_2894184_3 Acetyl xylan esterase (AXE1) K01303 - 3.4.19.1 0.000000000000002446 90.0
YYD1_k127_2904334_0 Penicillin amidase K01434 - 3.5.1.11 8.603e-287 904.0
YYD1_k127_2904334_1 Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme K00789 GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464 2.5.1.6 1.148e-214 672.0
YYD1_k127_2904334_10 Belongs to the CDS family K00981 - 2.7.7.41 0.00000000000000000000000000000000000000000000000000000000000000000000000003705 258.0
YYD1_k127_2904334_11 Belongs to the thioredoxin family K03671 - - 0.000000000000000000000000000000225 125.0
YYD1_k127_2904334_12 Belongs to the Fur family K03711,K09825 - - 0.0000000000000000000000000000255 122.0
YYD1_k127_2904334_13 Peptidase family M28 - - - 0.0000000000001477 76.0
YYD1_k127_2904334_2 Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import K02007 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002273 394.0
YYD1_k127_2904334_3 Belongs to the universal ribosomal protein uS2 family K02967 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006768 371.0
YYD1_k127_2904334_4 Catalyzes the reversible phosphorylation of UMP to UDP K09903 GO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576 2.7.4.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001092 353.0
YYD1_k127_2904334_5 Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids K00806 - 2.5.1.31 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 349.0
YYD1_k127_2904334_6 ABC transporter K02006 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001147 321.0
YYD1_k127_2904334_7 TIGRFAM cobalt ABC transporter, inner membrane subunit CbiQ K02008 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000008234 288.0
YYD1_k127_2904334_8 Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome K02357 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001565 273.0
YYD1_k127_2904334_9 Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another K02838 GO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000254 265.0
YYD1_k127_290973_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004565 417.0
YYD1_k127_2911444_0 PFAM peptidase M3A and M3B, thimet oligopeptidase F K08602 - - 5.838e-210 659.0
YYD1_k127_2916101_0 - - - - 0.0000000000000000000000000000000000001056 156.0
YYD1_k127_2916101_1 peptidyl-tyrosine sulfation - - - 0.00000000001347 79.0
YYD1_k127_2930301_0 Domain of unknown function (DUF4111) K00984 - 2.7.7.47 0.00000000000000000000000000000000000000000000000000000000000000000003289 241.0
YYD1_k127_2930301_1 helix_turn_helix, Lux Regulon - - - 0.0000000000000000000000000000000000000000000000000000000000005113 218.0
YYD1_k127_2930301_2 Histidine kinase K07777,K19661,K21405 - 2.7.13.3 0.000000000000000000000000000000000000000000000009977 192.0
YYD1_k127_2930301_3 Peptidase family C25 - - - 0.0000000000000000000000176 108.0
YYD1_k127_2955004_0 Lysine-2,3-aminomutase K01843 - 5.4.3.2 4.226e-238 742.0
YYD1_k127_2955004_1 Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues K01299 - 3.4.17.19 1.3e-211 668.0
YYD1_k127_2955004_2 PFAM Aminotransferase class I and II K14155 - 4.4.1.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006879 439.0
YYD1_k127_2955004_3 D-isomer specific 2-hydroxyacid dehydrogenase K00058,K16843 - 1.1.1.310,1.1.1.399,1.1.1.95 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002417 331.0
YYD1_k127_2955004_4 acid phosphatase activity K01120,K03651,K11175 GO:0003674,GO:0003824,GO:0004112,GO:0004114,GO:0004115,GO:0005488,GO:0005506,GO:0005575,GO:0005618,GO:0005623,GO:0006139,GO:0006163,GO:0006195,GO:0006198,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008081,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0008663,GO:0009056,GO:0009058,GO:0009117,GO:0009150,GO:0009154,GO:0009166,GO:0009187,GO:0009214,GO:0009259,GO:0009261,GO:0009405,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0030145,GO:0030312,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042301,GO:0042545,GO:0042578,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044419,GO:0044464,GO:0045229,GO:0046058,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0051704,GO:0055086,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576 2.1.2.2,3.1.4.17,3.1.4.53 0.0000000000000000000000000000000000000000000000000000000000000000000000000000513 267.0
YYD1_k127_2955004_5 NurA - - - 0.00000000000000000000000000000000000000000000000000000000000008958 228.0
YYD1_k127_2955004_7 domain, Protein - - - 0.0000000000000000000000000000000000000000002807 171.0
YYD1_k127_2955004_8 Domain of unknown function DUF87 K06915 - - 0.0000000000000000000005069 97.0
YYD1_k127_2965044_0 acetyl-CoA carboxylase K01961 - 6.3.4.14,6.4.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003865 559.0
YYD1_k127_2965044_1 Provides the (R)-glutamate required for cell wall biosynthesis K01776 - 5.1.1.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000293 337.0
YYD1_k127_2965044_2 PFAM glutamine amidotransferase class-I K07010 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006566 261.0
YYD1_k127_2965044_3 CYTH domain K05873 - 4.6.1.1 0.00000000000000000000000000000000000000000000000263 181.0
YYD1_k127_2965044_4 CoA carboxylase activity K01965,K02160 - 6.4.1.3 0.00000000000000000000000339 113.0
YYD1_k127_2965044_6 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.000000000000009548 79.0
YYD1_k127_2965044_7 Alpha/beta hydrolase family - - - 0.00000000009225 67.0
YYD1_k127_2965044_8 Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide - - - 0.0002839 44.0
YYD1_k127_2969967_0 Transposase K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008061 267.0
YYD1_k127_2971585_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001803 278.0
YYD1_k127_2976344_0 Catalyzes the synthesis of GMP from XMP K01951 - 6.3.5.2 1.65e-240 752.0
YYD1_k127_2976344_1 NTF2-like N-terminal transpeptidase domain K05515 - 3.4.16.4 4.83e-214 691.0
YYD1_k127_2976344_10 - - - - 0.00000000000000000000000000000000000000000001209 176.0
YYD1_k127_2976344_11 PFAM type II secretion system protein E K02283 - - 0.00000000000000005871 88.0
YYD1_k127_2976344_12 Protein of unknown function (DUF2442) - - - 0.0000000006684 64.0
YYD1_k127_2976344_2 PFAM Radical SAM domain protein K04069 - 1.97.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007249 559.0
YYD1_k127_2976344_3 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit K06949 - 3.1.3.100 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004267 379.0
YYD1_k127_2976344_4 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002785 314.0
YYD1_k127_2976344_6 histone H2A K63-linked ubiquitination - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000002722 312.0
YYD1_k127_2976344_7 Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis K03816 - 2.4.2.22 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003601 282.0
YYD1_k127_2976344_8 SMART protein phosphatase 2C domain protein K20074 - 3.1.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000001143 276.0
YYD1_k127_2976344_9 PFAM Maf family protein K06287 - - 0.0000000000000000000000000000000000000000000000000000000000000009781 225.0
YYD1_k127_2991286_0 PFAM Integrase catalytic - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003468 404.0
YYD1_k127_2991286_1 PFAM IstB domain protein ATP-binding protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000294 243.0
YYD1_k127_2991286_2 Type I restriction modification DNA specificity domain K01154 - 3.1.21.3 0.00000000000000000000000000001871 118.0
YYD1_k127_2993583_0 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000003696 238.0
YYD1_k127_2993583_1 Histidine kinase - - - 0.00000000000000000000000000000000000000000000000004126 201.0
YYD1_k127_2993583_2 Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP - - - 0.00000005359 57.0
YYD1_k127_2997560_0 Dolichyl-phosphate-mannose-protein mannosyltransferase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102 382.0
YYD1_k127_3009695_0 VWA domain containing CoxE-like protein K07114 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002231 483.0
YYD1_k127_3009695_1 EamA-like transporter family - - - 0.0000000000000000002532 91.0
YYD1_k127_3013286_0 Threonyl alanyl tRNA synthetase SAD K07050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001496 304.0
YYD1_k127_3013286_1 SMP-30/Gluconolaconase/LRE-like region K14274 GO:0003674,GO:0003824,GO:0004341,GO:0005488,GO:0005509,GO:0005575,GO:0005576,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016787,GO:0016788,GO:0019752,GO:0019852,GO:0019853,GO:0042364,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046364,GO:0046394,GO:0046872,GO:0051186,GO:0051188,GO:0052689,GO:0071704,GO:1901576 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000007263 293.0
YYD1_k127_3013286_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity K00303 - 1.5.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000001349 251.0
YYD1_k127_3013286_3 DNA binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002491 252.0
YYD1_k127_3013286_4 Calcineurin-like phosphoesterase - - - 0.00000000000000000000000000000000000000000000000000000001187 207.0
YYD1_k127_3014960_1 proteolysis K21140 - 3.13.1.6 0.0000000000000000002852 99.0
YYD1_k127_3038631_0 nitrite transmembrane transporter activity K02532 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004532 548.0
YYD1_k127_3038631_1 Transporter Family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002866 243.0
YYD1_k127_3038631_2 Responsible for synthesis of pseudouridine from uracil K06177 - 5.4.99.28,5.4.99.29 0.000000000000000000000000000000000000000000000000000000000004942 215.0
YYD1_k127_3038631_3 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000001382 200.0
YYD1_k127_3046423_0 helix_turn_helix, arabinose operon control protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 629.0
YYD1_k127_3046423_1 pyrroloquinoline quinone binding - - - 0.00000000000000000001696 97.0
YYD1_k127_3046423_2 cGMP-dependent protein kinase activity K07376,K19477 - 2.7.11.12 0.00000000031 74.0
YYD1_k127_3046423_3 Major Facilitator Superfamily K03301 - - 0.000000004873 70.0
YYD1_k127_3051536_0 TIGRFAM methylmalonyl-CoA mutase, large subunit K01847,K01848 - 5.4.99.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003171 546.0
YYD1_k127_3051536_1 Putative pyruvate format-lyase activating enzyme (DUF1786) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003909 409.0
YYD1_k127_3051536_2 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001089 354.0
YYD1_k127_3051536_3 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 342.0
YYD1_k127_3051536_4 Transcriptional regulator PadR-like family - - - 0.000000000000000000000000000000000000000000000000000000000000002464 224.0
YYD1_k127_3051536_5 GNAT acetyltransferase - - - 0.0000000000000000000000000000000000002332 151.0
YYD1_k127_3068284_0 PFAM ROK family protein - - - 0.000000000000000000000000000000000000000000000000000408 189.0
YYD1_k127_3068284_1 PFAM DNA mismatch repair protein MutS domain protein - - - 0.0000000000000000000000000000000000000000000003453 170.0
YYD1_k127_3079875_0 ankyrin repeats - - - 0.000000000000000000000001007 110.0
YYD1_k127_3080737_0 Arginyl-tRNA synthetase K01887 GO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.19 2.108e-264 827.0
YYD1_k127_3080737_1 Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family K03215 - 2.1.1.190 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003086 514.0
YYD1_k127_3080737_2 PFAM aminotransferase class V - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006835 398.0
YYD1_k127_3080737_3 cyclic 2,3-diphosphoglycerate synthetase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000005388 245.0
YYD1_k127_3080737_4 Haloacid dehalogenase-like hydrolase K01560 - 3.8.1.2 0.00000000000000000000000000000000000000000000000000000005068 202.0
YYD1_k127_3080737_5 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000000000000001802 177.0
YYD1_k127_3080737_6 Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism K01488,K18286 GO:0000034,GO:0003674,GO:0003824,GO:0006139,GO:0006144,GO:0006145,GO:0006146,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0046083,GO:0046100,GO:0046101,GO:0046112,GO:0046113,GO:0046148,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576 3.5.4.4,3.5.4.40 0.000000000000000000000000000000000000000003845 169.0
YYD1_k127_3097295_0 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009086 429.0
YYD1_k127_3097295_1 Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway K00852,K00856,K10710,K22026 - 2.7.1.15,2.7.1.20,2.7.1.213,2.7.1.218,2.7.1.73 0.00000000001881 66.0
YYD1_k127_3106530_0 PTS HPr component phosphorylation site K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003179 497.0
YYD1_k127_3106530_1 system Galactitol-specific IIC component K02775 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006481 476.0
YYD1_k127_3106530_2 4Fe-4S single cluster domain - - - 0.00000000000000000000000000000000000000000000000000000000001998 214.0
YYD1_k127_3106530_3 transcriptional regulator - - - 0.00000000000000000000000000000000000000000000000004639 188.0
YYD1_k127_3106530_4 HPr family K11189 - - 0.0000000000000000001698 91.0
YYD1_k127_31138_0 Putative glucoamylase K01183 - 3.2.1.14 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001697 586.0
YYD1_k127_31138_1 MacB-like periplasmic core domain K02004 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004891 373.0
YYD1_k127_31138_2 ATPases associated with a variety of cellular activities K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002501 310.0
YYD1_k127_31138_3 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.00000000000000005735 92.0
YYD1_k127_31138_4 AhpC/TSA antioxidant enzyme - - - 0.00000001819 61.0
YYD1_k127_3117782_0 Tetratricopeptide repeat - - - 0.0000000000000000000000000000000000002028 156.0
YYD1_k127_3117782_1 PFAM helix-turn-helix domain protein - - - 0.00000000000000000000000000000000007052 140.0
YYD1_k127_3136334_0 PhoQ Sensor - - - 1.597e-281 888.0
YYD1_k127_3149171_0 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000002401 238.0
YYD1_k127_3149171_1 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000007251 177.0
YYD1_k127_3149171_2 Psort location Cytoplasmic, score K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000006505 172.0
YYD1_k127_3149171_3 Poly(3-hydroxybutyrate) depolymerase K03932 - - 0.0000000000000000000000001085 110.0
YYD1_k127_3149171_4 Protein of unknown function (DUF1572) - - - 0.00000000000000000002962 96.0
YYD1_k127_3152373_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate K03701 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001775 578.0
YYD1_k127_3152373_1 Binding-protein-dependent transport system inner membrane component K05815 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002874 316.0
YYD1_k127_3152373_2 ABC transporter (permease) K02025,K05814 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000001038 262.0
YYD1_k127_3152373_3 bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding - - - 0.00000000000000000000000000000000000000000000000002527 189.0
YYD1_k127_3152373_4 COGs COG1653 ABC-type sugar transport system periplasmic component K05813 - - 0.000000000926 63.0
YYD1_k127_3179178_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004278 496.0
YYD1_k127_3179178_1 Branched-chain amino acid transport system / permease component K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001984 393.0
YYD1_k127_3179178_2 Protein of unknown function, DUF255 K06888 - - 0.0000000000000000000000000000000000000000000000000002526 187.0
YYD1_k127_3179178_3 ATP-grasp domain K01921 - 6.3.2.4 0.00000000000000000000000000000000000000000000009589 181.0
YYD1_k127_3194582_0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004181 438.0
YYD1_k127_3194582_1 Galactose-1-phosphate uridyl transferase, C-terminal domain K00965 - 2.7.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005094 427.0
YYD1_k127_3194582_2 PFAM Respiratory-chain NADH dehydrogenase 24 Kd subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000142 171.0
YYD1_k127_3194582_3 Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology K07025 - - 0.000000000000000000000000000000002016 138.0
YYD1_k127_3194582_4 Transcriptional regulatory protein, C terminal - - - 0.000000000001138 70.0
YYD1_k127_3194582_5 Domain of unknown function (DUF4260) - - - 0.0000000001115 62.0
YYD1_k127_3198603_0 ATP-dependent transcriptional regulator K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008775 325.0
YYD1_k127_3224281_0 Putative modulator of DNA gyrase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 387.0
YYD1_k127_3224281_1 ErfK ybiS ycfS ynhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001131 317.0
YYD1_k127_3224281_11 Involved in the tonB-independent uptake of proteins K03641 - - 0.000000000000000002501 98.0
YYD1_k127_3224281_2 PFAM ErfK YbiS YcfS YnhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006869 314.0
YYD1_k127_3224281_3 Putative modulator of DNA gyrase K03592 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001015 300.0
YYD1_k127_3224281_4 Ribose-phosphate pyrophosphokinase K00948 - 2.7.6.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003084 291.0
YYD1_k127_3224281_5 ferrous iron binding K06990,K09141 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002432 249.0
YYD1_k127_3224281_6 PFAM cell wall hydrolase autolysin K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000000000000000000003733 226.0
YYD1_k127_3224281_7 - - - - 0.0000000000000000000000000000000000000000000000001079 184.0
YYD1_k127_3224281_8 - - - - 0.0000000000000000000000000000000000000000000002571 174.0
YYD1_k127_3224281_9 PFAM flavin reductase domain protein, FMN-binding - - - 0.000000000000000000000000000000000000001872 153.0
YYD1_k127_3224525_0 SNARE associated Golgi protein K03975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000181 254.0
YYD1_k127_3224525_1 biotin lipoate A B protein ligase K03524 - 6.3.4.15 0.0000000000000000000000000000000000000000000000000005938 194.0
YYD1_k127_3240875_0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004588 321.0
YYD1_k127_3248419_0 COG2931 RTX toxins and related Ca2 -binding proteins - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001099 533.0
YYD1_k127_3248419_1 Serine threonine protein kinase K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000000007304 240.0
YYD1_k127_3248419_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000001103 165.0
YYD1_k127_3248419_3 - - - - 0.000004284 53.0
YYD1_k127_32485_0 Domain of unknown function DUF87 K06915 - - 3.587e-205 650.0
YYD1_k127_32485_1 Winged helix DNA-binding domain K09927 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000004283 308.0
YYD1_k127_32485_10 hydrolase (metallo-beta-lactamase superfamily) K02238 - - 0.00000001194 66.0
YYD1_k127_32485_11 Peptidoglycan binding domain - - - 0.0000001625 62.0
YYD1_k127_32485_3 PFAM NUDIX hydrolase K03574 - 3.6.1.55 0.000000000000000000000000000000000000000000000000000000000000002552 220.0
YYD1_k127_32485_4 Iron-storage protein K02217 - 1.16.3.2 0.00000000000000000000000000000000000000000000000000000001508 201.0
YYD1_k127_32485_5 FR47-like protein K18816 - 2.3.1.82 0.000000000000000000000000000000000001436 143.0
YYD1_k127_32485_6 YacP-like NYN domain K06962 - - 0.000000000000000000000000009676 115.0
YYD1_k127_32485_8 Domain of unknown function (DUF1992) K19373 - - 0.0000000000000005081 83.0
YYD1_k127_32485_9 HIT family hydrolase K02503 - - 0.0000000000009053 74.0
YYD1_k127_3250121_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008593 556.0
YYD1_k127_3250121_1 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000117 489.0
YYD1_k127_3250121_2 Major facilitator Superfamily K08223 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000008328 281.0
YYD1_k127_3250121_3 PFAM Inositol monophosphatase K01092 - 3.1.3.25 0.000000000000000000000000000000000000000003411 165.0
YYD1_k127_3253539_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008196 471.0
YYD1_k127_3253539_1 von Willebrand factor (vWF) type A domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003661 364.0
YYD1_k127_3253539_10 Belongs to the UPF0337 (CsbD) family - - - 0.00000001457 59.0
YYD1_k127_3253539_11 Evidence 4 Homologs of previously reported genes of - - - 0.0006108 48.0
YYD1_k127_3253539_2 von Willebrand factor, type A K07114 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003495 288.0
YYD1_k127_3253539_3 Bacterial transcriptional activator domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003046 290.0
YYD1_k127_3253539_4 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000000000000000000001455 239.0
YYD1_k127_3253539_5 Von Willebrand factor type A K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000001124 243.0
YYD1_k127_3253539_6 Trypsin-like peptidase domain - - - 0.0000000000000000000000000000000000000000000000000000000000002732 222.0
YYD1_k127_3253539_7 COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - - - 0.000000000000000000000000000000000000000000001512 172.0
YYD1_k127_3253539_8 response regulator K07669 - - 0.00000000000000000000000000000000003476 140.0
YYD1_k127_3253539_9 Histidine kinase - - - 0.0000000000000000000000000003076 131.0
YYD1_k127_3264319_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01533,K17686 - 3.6.3.4,3.6.3.54 9.396e-216 687.0
YYD1_k127_3264319_1 Peptidase_C39 like family - - - 0.0000000000000000000000000000000000000000000001055 170.0
YYD1_k127_3265939_0 Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis K01042 - 2.9.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001771 566.0
YYD1_k127_3265939_1 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction K01409 GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564 2.3.1.234 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001172 478.0
YYD1_k127_3265939_2 Metallopeptidase family M24 K01262 - 3.4.11.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001401 462.0
YYD1_k127_3265939_3 Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis K03525 - 2.7.1.33 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002804 405.0
YYD1_k127_3265939_4 Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate K01918 GO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605 6.3.2.1 0.000000000000000000000000000000000000000000000000000000000000000000000000005936 259.0
YYD1_k127_3265939_5 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002119 272.0
YYD1_k127_3265939_6 Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine K07566 GO:0000049,GO:0000166,GO:0002949,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363 2.7.7.87 0.0000000000000000000000000000000000000000000004442 175.0
YYD1_k127_3271788_0 Amidohydrolase family - - - 9.998e-220 689.0
YYD1_k127_3271788_1 Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate K01491 GO:0003674,GO:0003824,GO:0004477,GO:0004488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0016787,GO:0016810,GO:0016814,GO:0019238,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114 1.5.1.5,3.5.4.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002383 398.0
YYD1_k127_3271788_2 UTRA K03710 - - 0.0000000000000000000000000000000000000000000000000000000000000007259 226.0
YYD1_k127_3276341_0 histidine kinase A domain protein K02484,K07642 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005951 406.0
YYD1_k127_3276341_1 Two component transcriptional regulator, winged helix family K02483 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001414 329.0
YYD1_k127_3276341_3 damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage K03702 - - 0.00000002159 55.0
YYD1_k127_3276341_4 Aminoacyl-tRNA editing domain K03976 - - 0.00000397 49.0
YYD1_k127_331392_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000001997 260.0
YYD1_k127_331392_1 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.00000000000000000000000694 102.0
YYD1_k127_3326435_0 Zinc metalloprotease (Elastase) - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000488 458.0
YYD1_k127_3329331_0 Pyridoxal-phosphate dependent enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002219 424.0
YYD1_k127_3334320_0 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001505 594.0
YYD1_k127_3334320_1 AAA domain, putative AbiEii toxin, Type IV TA system K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001428 385.0
YYD1_k127_3334320_2 ABC-2 family transporter protein - - - 0.00000000000000001401 93.0
YYD1_k127_3340314_0 PFAM polysaccharide biosynthesis protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002705 428.0
YYD1_k127_3340314_1 PFAM O-antigen polymerase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004103 294.0
YYD1_k127_3340314_2 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000049 267.0
YYD1_k127_3340314_3 lipopolysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000005013 194.0
YYD1_k127_3342758_0 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002908 342.0
YYD1_k127_3342758_1 Belongs to the enoyl-CoA hydratase isomerase family K01692 - 4.2.1.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402 337.0
YYD1_k127_3342758_10 ATPase activity K02045 - 3.6.3.25 0.0000000000003501 72.0
YYD1_k127_3342758_2 heme binding K21472 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006486 306.0
YYD1_k127_3342758_3 aminoglycoside 3-N-acetyltransferase activity K00662 - 2.3.1.81 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006676 303.0
YYD1_k127_3342758_4 Belongs to the enoyl-CoA hydratase isomerase family K15866 - 5.3.3.18 0.0000000000000000000000000000000000000000000000000000000000000000000001812 246.0
YYD1_k127_3342758_5 Sulfate ABC transporter periplasmic sulfate-binding protein K02048 GO:0005575,GO:0005623,GO:0042597,GO:0044464 - 0.000000000000000000000000000000000000000000000000000000894 205.0
YYD1_k127_3342758_6 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) K00059,K03366 - 1.1.1.100,1.1.1.304,1.1.1.76 0.000000000000000000000000000000000000000000000000000007547 199.0
YYD1_k127_3342758_7 ATPase-coupled sulfate transmembrane transporter activity K02046,K02047 GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000001668 196.0
YYD1_k127_3342758_8 DNA-templated transcription, initiation K03088 - - 0.0000000000000000000000000000000000933 141.0
YYD1_k127_3357953_0 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 1.129e-208 656.0
YYD1_k127_3357953_1 Belongs to the ABC transporter superfamily K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001226 456.0
YYD1_k127_3357953_10 Ig-like domain from next to BRCA1 gene K13276 - - 0.00000000000000000000000000000000000000000008096 175.0
YYD1_k127_3357953_12 PFAM HD domain - - - 0.000000000000000001727 94.0
YYD1_k127_3357953_13 Bacterial protein of unknown function (DUF951) - - - 0.000000000000000003019 93.0
YYD1_k127_3357953_2 Belongs to the ABC transporter superfamily K15583 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002686 420.0
YYD1_k127_3357953_3 ABC transporter substrate-binding protein K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002364 420.0
YYD1_k127_3357953_4 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001359 402.0
YYD1_k127_3357953_5 Glycosyltransferase 28 domain K03715 - 2.4.1.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004782 402.0
YYD1_k127_3357953_6 Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA K07056 GO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0070677,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.198 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001119 306.0
YYD1_k127_3357953_7 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034 - - 0.0000000000000000000000000000000000000000000000000000000000000000001531 245.0
YYD1_k127_3357953_8 Prephenate dehydrogenase K04517 - 1.3.1.12 0.0000000000000000000000000000000000000000000000000000000001398 215.0
YYD1_k127_3357953_9 Peptidase M50 - - - 0.00000000000000000000000000000000000000000000000000000001815 203.0
YYD1_k127_3358386_0 MoeA C-terminal region (domain IV) K03750,K07219 - 2.10.1.1 0.0000000000000000000000000000000002597 140.0
YYD1_k127_3358386_1 Transposase IS200 like - - - 0.000000000000000000000001992 109.0
YYD1_k127_3360219_0 Trehalase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002692 445.0
YYD1_k127_3360219_1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated K00567,K10778 - 2.1.1.63 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009431 324.0
YYD1_k127_3360219_2 Purine nucleoside phosphorylase DeoD-type K03784 - 2.4.2.1 0.00000000000000000000000000000000001366 136.0
YYD1_k127_3360219_3 Methyltransferase domain - - - 0.0000000000000000000000000006358 123.0
YYD1_k127_3375175_0 One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity K02886 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007067 485.0
YYD1_k127_3375175_1 One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02906 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007412 344.0
YYD1_k127_3375175_10 This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance K02881 GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0008097,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.00000000000000000000000000000000000000002966 154.0
YYD1_k127_3375175_11 The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome K02890 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000000000000001364 152.0
YYD1_k127_3375175_12 One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit K02895 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000002702 144.0
YYD1_k127_3375175_13 One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome K02892 - - 0.0000000000000000000000000000000000185 137.0
YYD1_k127_3375175_14 Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site K02954 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000002156 117.0
YYD1_k127_3375175_15 One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA K02961 - - 0.00000000000000000000000002594 110.0
YYD1_k127_3375175_16 Belongs to the universal ribosomal protein uL29 family K02904 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000001078 66.0
YYD1_k127_3375175_2 Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation K02982 GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001332 323.0
YYD1_k127_3375175_3 This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits K02931 GO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000005902 287.0
YYD1_k127_3375175_4 Forms part of the polypeptide exit tunnel K02926 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 286.0
YYD1_k127_3375175_5 This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center K02933 GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000000000000009139 226.0
YYD1_k127_3375175_6 Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs K02878 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0097159,GO:1901363,GO:1990904 - 0.0000000000000000000000000000000000000000000000000000000000001217 214.0
YYD1_k127_3375175_7 Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome K02874 GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0097159,GO:1901363,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000004262 210.0
YYD1_k127_3375175_8 One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit K02994 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015935,GO:0022626,GO:0022627,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.00000000000000000000000000000000000000000000000000000001262 200.0
YYD1_k127_3375175_9 Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA K02965 GO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.0000000000000000000000000000000000000000000003757 167.0
YYD1_k127_3383820_0 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00113 - 1.1.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006305 529.0
YYD1_k127_3383820_1 PFAM fumarate reductase succinate dehydrogenase flavoprotein domain protein K00112 - 1.1.5.3 0.00000000000000000000000000001422 123.0
YYD1_k127_3389098_0 AAA ATPase domain - - - 1.483e-231 764.0
YYD1_k127_3408846_0 Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP K09458 - 2.3.1.179 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001067 446.0
YYD1_k127_3408846_1 Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl- acyl-carrier-protein (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA K03621 - 2.3.1.15 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002385 424.0
YYD1_k127_3408846_2 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000004239 151.0
YYD1_k127_3408846_3 - - - - 0.000000000000000000000000000000000000001239 156.0
YYD1_k127_3408846_4 Belongs to the GARS family K01945 - 6.3.4.13 0.00000000000000000000000000000003225 126.0
YYD1_k127_3425609_0 Subtilase family K08651 - 3.4.21.66 0.000000000000000000000000000000000000000000000000000000000000000000000102 266.0
YYD1_k127_3425609_1 Formamidopyrimidine-DNA glycosylase H2TH domain K10563 - 3.2.2.23,4.2.99.18 0.000000000000000000000000000000000000000000000000000000007732 207.0
YYD1_k127_3425753_0 Phosphoglucomutase/phosphomannomutase, C-terminal domain K01835 GO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019318,GO:0019320,GO:0019388,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0055114,GO:0071704,GO:1901575,GO:1901576 5.4.2.2 3.52e-263 820.0
YYD1_k127_3425753_1 beta-galactosidase activity K01190,K17624 - 3.2.1.23,3.2.1.97 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003408 467.0
YYD1_k127_3425753_2 stress-induced mitochondrial fusion - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 465.0
YYD1_k127_3425753_3 PFAM band 7 protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003227 408.0
YYD1_k127_3425753_5 CAAX protease self-immunity K07052 - - 0.000000000000000000000000003393 124.0
YYD1_k127_3425753_6 CAAX protease self-immunity K07052 - - 0.00000000000000000000000008347 118.0
YYD1_k127_3435500_0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K01007 - 2.7.9.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002552 514.0
YYD1_k127_3435500_1 oxidoreductase activity K02396 - - 0.00000000000000000000000000000000000000000000000000000007775 220.0
YYD1_k127_3435500_2 helix_turn_helix multiple antibiotic resistance protein - - - 0.0000003617 58.0
YYD1_k127_3443531_0 Bacterial extracellular solute-binding protein K02064 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003265 407.0
YYD1_k127_3443531_1 ABC transporter substrate-binding protein K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001428 249.0
YYD1_k127_3443531_2 Thiamin pyrophosphokinase, vitamin B1 binding domain K00949 - 2.7.6.2 0.0000000000000000000000000000000000000000000000000007538 192.0
YYD1_k127_3474831_0 TIGRFAM cytochrome C family protein - - - 0.0000000000000000000000000000000000000005747 158.0
YYD1_k127_3477327_0 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000001265 231.0
YYD1_k127_3477327_1 Uncharacterized membrane protein (DUF2298) - - - 0.000000000000000000000002892 107.0
YYD1_k127_3479157_0 aminotransferase class I and II K10907 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007454 488.0
YYD1_k127_3479157_1 PFAM Nucleotidyl transferase K00973 - 2.7.7.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001154 404.0
YYD1_k127_3479157_2 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001362 352.0
YYD1_k127_3479157_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 0.000000000000000000000000000001912 126.0
YYD1_k127_3513531_0 Belongs to the aldehyde dehydrogenase family K00294 - 1.2.1.88 2.225e-279 865.0
YYD1_k127_3513531_1 Coenzyme A transferase K01039 - 2.8.3.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 466.0
YYD1_k127_3513531_10 Belongs to the cysteine synthase cystathionine beta- synthase family K01738 - 2.5.1.47 0.000000000000000000000000000000000000000000000000000000000000000000001704 247.0
YYD1_k127_3513531_11 Branched-chain amino acid transport K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000001049 230.0
YYD1_k127_3513531_12 COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - - - 0.00000000000000000000000000000000000000000000000000000000000003107 226.0
YYD1_k127_3513531_13 oxidoreductase K00010,K16043 - 1.1.1.18,1.1.1.369,1.1.1.370 0.000000000000000000000000000000000000000000000000000209 198.0
YYD1_k127_3513531_14 Belongs to the binding-protein-dependent transport system permease family - - - 0.00000000000000000000000000000000000000000000000005743 189.0
YYD1_k127_3513531_15 Branched-chain amino acid transport system / permease component K01998 - - 0.0000000000000000000000000000000305 139.0
YYD1_k127_3513531_16 helix_turn_helix isocitrate lyase regulation K02624 - - 0.000000000000000000000000000003712 130.0
YYD1_k127_3513531_2 Helicase conserved C-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004884 472.0
YYD1_k127_3513531_3 Coenzyme A transferase K01040 - 2.8.3.12 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008426 432.0
YYD1_k127_3513531_4 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001841 433.0
YYD1_k127_3513531_5 Creatinase/Prolidase N-terminal domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000577 388.0
YYD1_k127_3513531_6 Luciferase-like monooxygenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005242 380.0
YYD1_k127_3513531_7 Threonine synthase K01733 - 4.2.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001631 354.0
YYD1_k127_3513531_8 PFAM diacylglycerol kinase catalytic region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001664 330.0
YYD1_k127_3513531_9 Psort location CytoplasmicMembrane, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000002106 246.0
YYD1_k127_3530698_0 PFAM extracellular solute-binding protein, family 5 K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002355 608.0
YYD1_k127_3530698_1 Glutamine synthetase, catalytic domain K01915 - 6.3.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004658 523.0
YYD1_k127_3530698_2 SMART phosphoesterase PHP domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 429.0
YYD1_k127_3530698_4 Cupin domain - - - 0.0000000000000000000000000000000004442 134.0
YYD1_k127_3530698_5 P-P-bond-hydrolysis-driven protein transmembrane transporter activity K03075 GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0022857,GO:0022884,GO:0031522,GO:0032978,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0042887,GO:0043952,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1904680 - 0.000000000000000000001114 96.0
YYD1_k127_3530698_6 PFAM binding-protein-dependent transport systems inner membrane component K15772 - - 0.0000000000000000006991 87.0
YYD1_k127_3540162_0 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001084 609.0
YYD1_k127_3540162_1 PFAM oxidoreductase domain protein - - - 0.000000000000000000000000002958 116.0
YYD1_k127_3551649_0 PFAM Patatin K07001 - - 0.0000000000000000000000000000000000000000000000000000003975 204.0
YYD1_k127_3551649_1 PFAM phospholipase Carboxylesterase K06999 - - 0.00000000000000000000000000000003121 134.0
YYD1_k127_3575076_0 glycosyl hydrolase, BNR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000003371 275.0
YYD1_k127_3575076_1 Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen K00003,K00982,K00990,K06950,K15371 GO:0000820,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006521,GO:0008150,GO:0008882,GO:0010565,GO:0016020,GO:0016740,GO:0016772,GO:0016779,GO:0019222,GO:0030312,GO:0031323,GO:0033238,GO:0040007,GO:0042221,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0060359,GO:0062012,GO:0065007,GO:0070566,GO:0071944,GO:0080090,GO:1901698 1.1.1.3,1.4.1.2,2.7.7.42,2.7.7.59,2.7.7.89 0.0000000000000000000000000000000000000002478 153.0
YYD1_k127_3575076_2 Trypsin-like peptidase domain - - - 0.0000000000000000000000001023 123.0
YYD1_k127_3575076_3 - - - - 0.000000000000000000000004705 109.0
YYD1_k127_3605717_0 PFAM Cobyrinic acid a,c-diamide synthase K03496 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002243 381.0
YYD1_k127_3605717_1 PFAM PfkB domain protein - - - 0.000000000000000000000001087 104.0
YYD1_k127_3605717_2 Belongs to the ParB family K03497 - - 0.0000004944 52.0
YYD1_k127_3634435_0 CHAT domain - - - 0.000000000000000000000000000000000000000000000000008458 200.0
YYD1_k127_363883_0 NB-ARC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001948 452.0
YYD1_k127_363883_1 Protein of unknown function (DUF664) - - - 0.00000000000000000000000000000000000000000000000000000000000006276 217.0
YYD1_k127_363883_2 DNA binding - - - 0.00000000000000000000000006811 115.0
YYD1_k127_3639982_0 PFAM FAD linked oxidase domain protein K00104 - 1.1.3.15 1.311e-216 681.0
YYD1_k127_3639982_1 4Fe-4S dicluster domain K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007981 415.0
YYD1_k127_3639982_2 PFAM FAD linked oxidase domain protein K11472 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003615 289.0
YYD1_k127_3655186_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000007933 209.0
YYD1_k127_3665266_0 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002996 609.0
YYD1_k127_3665266_1 InterPro IPR014922 - - - 0.000000000000000000000000000000000000000000000000000000009232 201.0
YYD1_k127_3665266_2 - - - - 0.000000000000000000000000000000000000000000000000000001749 198.0
YYD1_k127_3665266_3 negative regulation of transcription, DNA-templated - - - 0.00000000000000000000000000000000000000002168 156.0
YYD1_k127_3665266_4 sequence-specific DNA binding - - - 0.000000000003413 70.0
YYD1_k127_3665266_5 - - - - 0.000004942 58.0
YYD1_k127_3676190_0 Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) K02433 - 6.3.5.6,6.3.5.7 1.997e-246 769.0
YYD1_k127_3676190_1 Belongs to the peptidase S8 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000243 278.0
YYD1_k127_3676190_2 nucleoside hydrolase - - - 0.00000000000000000000000000000000000000000000001247 198.0
YYD1_k127_3676190_3 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02435 - 6.3.5.6,6.3.5.7 0.00000000000000000000000000000000000000001296 155.0
YYD1_k127_3676190_4 PFAM peptidase M55 D-aminopeptidase K16203 - - 0.0000000000001725 72.0
YYD1_k127_3682739_0 Methyltransferase K08316 - 2.1.1.171 0.000000000000000000000000000000000000000000000000000000001215 204.0
YYD1_k127_3682739_1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase - - - 0.00000000000000000006621 101.0
YYD1_k127_3692430_0 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006809 514.0
YYD1_k127_3692430_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00333 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000003731 282.0
YYD1_k127_3692430_2 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.0000000000000000000000000000000000000000000000000000000000000002132 225.0
YYD1_k127_3697598_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K15975 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007032 571.0
YYD1_k127_3697598_1 DinB superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000877 218.0
YYD1_k127_3697598_2 PFAM OsmC family protein K04063 - - 0.000000000000000000000000000000000000000000003291 167.0
YYD1_k127_3697598_3 Acetyltransferase (GNAT) domain K03828 - - 0.00000000000000006133 87.0
YYD1_k127_371981_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000196 374.0
YYD1_k127_371981_1 PFAM bifunctional deaminase-reductase domain protein - - - 0.0000000000000000000000000000000000000000000000000001088 190.0
YYD1_k127_371981_2 Membrane dipeptidase (Peptidase family M19) - - - 0.000000000000000000000000000000000000000000000000007015 193.0
YYD1_k127_371981_3 retrograde transport, endosome to Golgi K07095 - - 0.00000000000000000000000000000000000000000003116 174.0
YYD1_k127_371981_4 CAAX protease self-immunity - - - 0.00000000000000000000000000002898 129.0
YYD1_k127_3735250_0 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000000001939 208.0
YYD1_k127_3735250_1 Protein of unknown function (DUF1706) - - - 0.0000000000000000000005034 102.0
YYD1_k127_3735250_2 Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 0.000000000009106 69.0
YYD1_k127_3740325_0 Transcriptional activator domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001305 520.0
YYD1_k127_3740325_1 Inosine-uridine preferring nucleoside hydrolase K01239 - 3.2.2.1 0.000000000000000000000000000000000000000000000000000000000000005777 239.0
YYD1_k127_3740325_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000008934 192.0
YYD1_k127_3740325_3 Cytochrome P450 - - - 0.000000004259 62.0
YYD1_k127_3740325_4 - - - - 0.0002198 49.0
YYD1_k127_3760348_0 RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication K02316 - - 7.3e-226 717.0
YYD1_k127_3760348_1 Uncharacterised ACR (DUF711) K09157 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 368.0
YYD1_k127_3760348_2 regulatory protein, arsR - - - 0.0000000000000000000000000000000000000000000000000000003495 199.0
YYD1_k127_3760348_3 NUDIX domain K08310 - 3.6.1.67 0.0000000000000000000000000000000000001752 145.0
YYD1_k127_3760348_4 Uncharacterized protein conserved in bacteria (DUF2087) - - - 0.00000000000000000000000000000001117 133.0
YYD1_k127_3761471_0 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000007332 158.0
YYD1_k127_3761471_1 calcium- and calmodulin-responsive adenylate cyclase activity K11005 - - 0.0000000000000000009418 97.0
YYD1_k127_3761471_2 ABC-2 type transporter K09690 - - 0.0000004734 52.0
YYD1_k127_3761471_3 Tfp pilus assembly protein FimV - - - 0.0000005929 62.0
YYD1_k127_3761471_4 pfam abc K09691 - - 0.0005941 48.0
YYD1_k127_376175_0 COG1961 Site-specific recombinases, DNA invertase Pin homologs K06400 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004571 595.0
YYD1_k127_376175_1 Ribbon-helix-helix protein, copG family - - - 0.000000001595 63.0
YYD1_k127_376175_2 Reverse transcriptase (RNA-dependent DNA polymerase) K00986,K20170 - 2.7.7.49 0.000000002192 58.0
YYD1_k127_3762198_0 Domain of unknown function DUF11 - - - 0.000000000000000000000000000000000000000000000000000000000000001073 251.0
YYD1_k127_3762198_1 Peptidase family C25 - - - 0.000000000000000000000000000000000000000000000000000000004495 225.0
YYD1_k127_3762198_2 oxidoreductase activity - - - 0.00000000000000000000000000000000000000000000001282 198.0
YYD1_k127_3762198_3 peptidase C60 sortase A and B K07284 - 3.4.22.70 0.00001281 55.0
YYD1_k127_3783671_0 Zinc metalloprotease (Elastase) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001954 313.0
YYD1_k127_3821958_1 COG2010 Cytochrome c, mono- and diheme variants K02305 - - 0.00000000000001258 78.0
YYD1_k127_3835261_0 Formiminotransferase domain, N-terminal subdomain K00603,K13990 - 2.1.2.5,4.3.1.4 2.263e-199 633.0
YYD1_k127_3835261_1 LysM domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 608.0
YYD1_k127_3835261_2 LysM domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000137 518.0
YYD1_k127_3835261_3 LysM domain K03046,K03641,K08642 - 2.7.7.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008367 467.0
YYD1_k127_3835261_4 Bacterial capsule synthesis protein PGA_cap K07282 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000136 456.0
YYD1_k127_3835261_5 Belongs to the dCTP deaminase family K01494 - 3.5.4.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003003 355.0
YYD1_k127_3835261_6 pfkB family carbohydrate kinase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004873 327.0
YYD1_k127_3835261_7 peptidase dimerisation domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004139 322.0
YYD1_k127_3835261_8 DNA methylase K00590 - 2.1.1.113 0.0000000000000000000000000000001959 125.0
YYD1_k127_3835261_9 Beta-lactamase K17836 - 3.5.2.6 0.000000000000000000000003755 118.0
YYD1_k127_3836210_0 glucuronate isomerase activity K01812 - 5.3.1.12 1.226e-195 620.0
YYD1_k127_3836210_1 pfkB family carbohydrate kinase K00874 - 2.7.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005302 468.0
YYD1_k127_3836210_2 lactate racemase activity K22373 - 5.1.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001104 420.0
YYD1_k127_3836210_3 Short-chain dehydrogenase reductase SDR - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009218 274.0
YYD1_k127_3836210_4 ABC transporter, transmembrane region K06147 - - 0.00000000000000000000005651 111.0
YYD1_k127_3842404_0 Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE K03695 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003701 354.0
YYD1_k127_3842404_1 PFAM phospholipid glycerol acyltransferase - - - 0.0000000000000000000000000000000000000000000162 174.0
YYD1_k127_3842404_2 'Cold-shock' DNA-binding domain K03704 - - 0.0000000000000000000000000002083 115.0
YYD1_k127_3842404_3 RNA recognition motif - - - 0.00000000000000000000006372 102.0
YYD1_k127_3842404_4 Peptidase_C39 like family - - - 0.000001661 60.0
YYD1_k127_3843806_0 amino acid - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000341 301.0
YYD1_k127_3843806_1 ABC-2 family transporter protein K01992 - - 0.00000000000000000000000000000000000000000003343 175.0
YYD1_k127_3843806_2 Ragb susd K21572 - - 0.00000000000000000000000000000000001055 140.0
YYD1_k127_3843806_3 transport system, permease component K01992 - - 0.00000000000000000000000000000000007721 143.0
YYD1_k127_3864645_0 Tetratricopeptide TPR_2 repeat protein - - - 8.466e-296 941.0
YYD1_k127_3865805_0 PFAM ROK family protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001168 405.0
YYD1_k127_3877452_0 3-deoxy-manno-octulosonate-8-phosphatase activity K00983,K03270 - 2.7.7.43,3.1.3.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006738 540.0
YYD1_k127_3877452_1 NeuB family K01654 - 2.5.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002868 464.0
YYD1_k127_3877452_2 inositol 2-dehydrogenase activity K18431 - 2.7.7.82 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001786 436.0
YYD1_k127_3877452_3 Enoyl-(Acyl carrier protein) reductase K00065 - 1.1.1.127 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004138 368.0
YYD1_k127_3877452_4 Glycosyl transferase, family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000005844 286.0
YYD1_k127_3877452_5 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005362 278.0
YYD1_k127_3877452_6 Cytidylyltransferase K07257 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000005334 258.0
YYD1_k127_3877452_7 Hexapeptide repeat of succinyl-transferase - - - 0.0000000000000000000000000000000000000000000000000000000000002377 218.0
YYD1_k127_3877452_8 Glycosyltransferase like family 2 K12992 - - 0.0000000000009076 70.0
YYD1_k127_3912777_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 0.0 1040.0
YYD1_k127_3912777_1 modification enzyme, MiaB family K18707 - 2.8.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004822 536.0
YYD1_k127_3912777_2 electron transfer flavoprotein, alpha subunit K03522 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001039 272.0
YYD1_k127_3912777_3 electron transfer flavoprotein K03521 - - 0.000000000000000000000000000000000000000000000000000002756 199.0
YYD1_k127_3912777_4 peptidyl-tyrosine sulfation - - - 0.0000000000000000000000000000000000000009647 165.0
YYD1_k127_3912777_5 PFAM acyl-coA-binding protein, ACBP - - - 0.0000000000000000000000000001 117.0
YYD1_k127_3912777_6 Scavenger mRNA decapping enzyme C-term binding K02503 - - 0.0000000000000000000000000004458 116.0
YYD1_k127_3912777_7 NAD synthase K01916 - 6.3.1.5 0.0000000000000000000000001047 107.0
YYD1_k127_3912777_8 'Cold-shock' DNA-binding domain K03704 - - 0.00000000000000000000001163 103.0
YYD1_k127_3912777_9 arsR family K21903 - - 0.00000000000000000000004939 101.0
YYD1_k127_3920742_0 L-sorbose 1-phosphate reductase K19956 - - 6.539e-238 748.0
YYD1_k127_3920742_1 General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) K02768,K08483,K11183 - 2.7.1.202,2.7.3.9 5.775e-204 655.0
YYD1_k127_3920742_2 protein-N(PI)-phosphohistidine-mannitol phosphotransferase system transmembrane transporter activity K02798,K02799,K02800 - 2.7.1.197 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 495.0
YYD1_k127_3920742_3 Phosphomethylpyrimidine kinase K16370 - 2.7.1.11 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004687 336.0
YYD1_k127_3920742_4 Phosphoglycerate mutase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001039 263.0
YYD1_k127_3920742_5 phosphoenolpyruvate-dependent sugar phosphotransferase system K02768,K02769,K02770,K02798,K02799,K02800,K11183 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0008643,GO:0009401,GO:0015144,GO:0015166,GO:0015318,GO:0015575,GO:0015791,GO:0015797,GO:0015850,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016773,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034219,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090563,GO:0090565,GO:1901618 2.7.1.197,2.7.1.202 0.000000000000000000000000000000000000000000001235 170.0
YYD1_k127_3920742_6 protein-N(PI)-phosphohistidine-mannitol phosphotransferase system transmembrane transporter activity K02798,K02799,K02800 - 2.7.1.197 0.000000000000000000000000002044 116.0
YYD1_k127_3920742_7 transcriptional antiterminator K03483 - - 0.0000000000000001567 81.0
YYD1_k127_3928001_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001141 484.0
YYD1_k127_3949818_0 MFS/sugar transport protein K16210 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008955 465.0
YYD1_k127_3999160_0 carbon starvation protein CstA K06200 - - 0.00000000000000000000000000000000000000000000000000000000000000008476 237.0
YYD1_k127_3999160_1 - - - - 0.0000000000000000000000005813 108.0
YYD1_k127_3999160_2 - - - - 0.000000000003663 75.0
YYD1_k127_4021623_1 PFAM helix-turn-helix domain protein - - - 0.00000000000000006908 83.0
YYD1_k127_4065809_0 RNA methylase K07446 GO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363 2.1.1.213 0.0000000000000000000000000000000000000000000000000000000000775 210.0
YYD1_k127_4065809_1 PFAM NADH ubiquinone K14128 - 1.8.98.5 0.0000000000000000000000000000000000000006626 160.0
YYD1_k127_4089242_0 Multicopper K04753 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008699 520.0
YYD1_k127_4089242_1 protein histidine kinase activity K10819 - 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008921 378.0
YYD1_k127_4089242_2 Peptidoglycan-binding LysM - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005113 354.0
YYD1_k127_4089242_3 PFAM response regulator receiver K07658 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001612 291.0
YYD1_k127_4089242_4 PFAM cytochrome c biogenesis protein, transmembrane region - - - 0.0000000000000000000000000000000000006858 149.0
YYD1_k127_4089242_5 PFAM blue (type 1) copper domain protein - - - 0.00000000000000000000000000000003631 131.0
YYD1_k127_4089242_6 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) K03183 GO:0003674,GO:0003824,GO:0006732,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 2.1.1.163,2.1.1.201 0.000000000928 64.0
YYD1_k127_4089242_7 - - - - 0.000005072 56.0
YYD1_k127_4090555_0 Family 4 glycosyl hydrolase K07406 - 3.2.1.22 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001051 563.0
YYD1_k127_4090555_1 DinB superfamily - - - 0.00000000000000000000000000000000000000000000000006817 182.0
YYD1_k127_4090555_2 RbsD / FucU transport protein family K06726 - 5.4.99.62 0.0000000000000000000000000000000000001715 145.0
YYD1_k127_4090555_3 Pfam:DUF385 - - - 0.000000000000000000000000000000000005488 143.0
YYD1_k127_4090555_4 Hydroxymethylglutaryl-coenzyme A reductase K00021 - 1.1.1.34 0.0000000036 62.0
YYD1_k127_4091129_0 Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine K00790 - 2.5.1.7 3.138e-211 662.0
YYD1_k127_4091129_1 aspartic-type endopeptidase activity K02236,K02506,K02654 - 3.4.23.43 0.000000000000000000000000000000000000000000000000001769 191.0
YYD1_k127_4091129_2 Beta-lactamase - - - 0.00009437 51.0
YYD1_k127_4113545_0 PFAM glycosyl transferase, family 51 - - - 5.091e-212 691.0
YYD1_k127_4113545_1 Trypsin K04771 - 3.4.21.107 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001949 576.0
YYD1_k127_4113545_10 Protein of unknown function (DUF3054) - - - 0.0000003712 57.0
YYD1_k127_4113545_2 May be involved in recombinational repair of damaged DNA K03631 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002056 353.0
YYD1_k127_4113545_3 Transcriptional activator domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001985 338.0
YYD1_k127_4113545_4 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001157 314.0
YYD1_k127_4113545_5 sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000009403 271.0
YYD1_k127_4113545_6 Zn peptidase - - - 0.00000000000000000000000000000000000000000000000000000000000000000494 243.0
YYD1_k127_4113545_7 Nudix hydrolase - - - 0.0000000000000000000000000000000000000000000000000003497 188.0
YYD1_k127_4113545_8 Involved in the tonB-independent uptake of proteins - - - 0.0000000000000000000000000000000000004913 152.0
YYD1_k127_4113545_9 AntiSigma factor - - - 0.0000000000002745 81.0
YYD1_k127_4114520_0 cheY-homologous receiver domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003898 340.0
YYD1_k127_4114520_1 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001074 299.0
YYD1_k127_4114520_2 Histidine kinase-like ATPases - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000007749 261.0
YYD1_k127_4116849_0 Belongs to the ABC transporter superfamily K05816 - 3.6.3.20 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001533 494.0
YYD1_k127_4116849_1 PFAM ABC transporter related - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000556 389.0
YYD1_k127_4116849_2 hydrolase family 16 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005017 327.0
YYD1_k127_4116849_4 pfkB family carbohydrate kinase - - - 0.00000005012 58.0
YYD1_k127_4132181_0 von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001831 328.0
YYD1_k127_4132181_1 Protein of unknown function DUF58 - - - 0.00000008851 56.0
YYD1_k127_4144295_0 amino acid - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005551 347.0
YYD1_k127_4144295_1 Thioredoxin - - - 0.000000000000000000000000000000003556 133.0
YYD1_k127_4144295_2 - - - - 0.000000003845 63.0
YYD1_k127_4147644_0 menaquinone-dependent protoporphyrinogen oxidase activity K00230 - 1.3.5.3 0.0000000000000000000000000000000000000000000000000000001816 199.0
YYD1_k127_4147644_1 Cytochrome bd-type quinol oxidase, subunit 1 K00425 - 1.10.3.14 0.000000000000000000000000000000000000000000000008161 174.0
YYD1_k127_4147644_2 membrane - - - 0.00000000000000000000000000000000000000000003731 173.0
YYD1_k127_4147644_3 Major Facilitator K08151,K08153 - - 0.0000000000000000000000000000000006401 146.0
YYD1_k127_4147644_4 - - - - 0.00000000000000002522 85.0
YYD1_k127_4147644_5 - - - - 0.00000000000003941 74.0
YYD1_k127_4147644_6 regulatory protein, LuxR - - - 0.0000006418 51.0
YYD1_k127_4155153_0 PFAM fumarate lyase K01679 - 4.2.1.2 7.202e-200 635.0
YYD1_k127_4155153_1 translation release factor activity K03265 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007415 384.0
YYD1_k127_4155153_2 Heat shock protein DnaJ domain protein K05516 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001214 357.0
YYD1_k127_4155153_3 PhoQ Sensor - - - 0.0000000000000000000000000000000000000000003292 163.0
YYD1_k127_4159835_0 Serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000429 299.0
YYD1_k127_4159835_1 PFAM cell divisionFtsK SpoIIIE K03466 - - 0.0000000000000000000000000000000000000000000000000000000000000000002486 246.0
YYD1_k127_4159835_2 Bacterial extracellular solute-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000000003923 235.0
YYD1_k127_4159835_3 Serine threonine protein kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000002737 182.0
YYD1_k127_4159835_4 histone H2A K63-linked ubiquitination K10914 - - 0.000002022 59.0
YYD1_k127_4164502_0 PFAM ABC transporter related K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006001 338.0
YYD1_k127_4164502_1 PFAM ABC transporter related K01996 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003664 331.0
YYD1_k127_4164502_2 CDP-alcohol phosphatidyltransferase K00995 - 2.7.8.5 0.00000000000000000000000000000000000000000000000000000000000005437 229.0
YYD1_k127_4164502_3 Lysylphosphatidylglycerol synthase TM region K07027 - - 0.0000000000000000000000000000000000000000000000000001865 198.0
YYD1_k127_4164502_4 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000001129 184.0
YYD1_k127_4164502_5 - - - - 0.000000003145 63.0
YYD1_k127_4176844_0 PFAM NHL repeat containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 541.0
YYD1_k127_4176844_1 succinyl-diaminopimelate desuccinylase activity K01439 GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009014,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009987,GO:0016053,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0032153,GO:0042802,GO:0043167,GO:0043169,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046451,GO:0046872,GO:0046914,GO:0050897,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 3.5.1.18 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008864 399.0
YYD1_k127_4197022_0 Psort location Cytoplasmic, score - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002038 398.0
YYD1_k127_419737_0 Acyl- CoA dehydrogenase type 2 domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005177 511.0
YYD1_k127_419737_1 PFAM L-carnitine dehydratase bile acid-inducible protein F - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003566 319.0
YYD1_k127_4200346_0 PFAM Dak phosphatase K07030 - - 1.634e-215 682.0
YYD1_k127_4200346_1 PFAM sodium calcium exchanger membrane region K07300 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003469 419.0
YYD1_k127_4200346_2 SMART serine threonine protein kinase K12132 - 2.7.11.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001259 353.0
YYD1_k127_4200346_3 Belongs to the ribulose-phosphate 3-epimerase family K01783 - 5.1.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002977 281.0
YYD1_k127_4200346_4 Uncharacterised protein, DegV family COG1307 - - - 0.000000000000000000000000000000000000000000002144 176.0
YYD1_k127_4200346_5 Asp23 family, cell envelope-related function - - - 0.000000000000000000000000000000000003239 140.0
YYD1_k127_4200346_6 ribosomal protein L28 K02902 - - 0.00000000000000009258 81.0
YYD1_k127_4200346_7 protein conserved in bacteria - - - 0.000000000001173 78.0
YYD1_k127_4200346_8 Involved in the TonB-independent uptake of proteins K03641 GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009719,GO:0009987,GO:0010033,GO:0010243,GO:0015031,GO:0015833,GO:0015893,GO:0017038,GO:0019904,GO:0030288,GO:0030313,GO:0031975,GO:0032153,GO:0032991,GO:0033036,GO:0042221,GO:0042493,GO:0042597,GO:0042886,GO:0042891,GO:0043213,GO:0044464,GO:0044877,GO:0045184,GO:0046677,GO:0046678,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0070887,GO:0071236,GO:0071237,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701 - 0.0001663 48.0
YYD1_k127_4222227_0 Oxidoreductase family, C-terminal alpha/beta domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000493 374.0
YYD1_k127_4222227_1 inositol 2-dehydrogenase activity K00010 - 1.1.1.18,1.1.1.369 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003979 306.0
YYD1_k127_4222227_2 Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system K02041 - 3.6.3.28 0.00000000000000000000000000000000000000000000000000000000000000000000002188 246.0
YYD1_k127_4222227_3 ABC transporter, phosphonate, periplasmic substrate-binding protein K02044 - - 0.0000000000000000000000000000000000000000000000007937 189.0
YYD1_k127_4225938_0 phosphorelay signal transduction system - - - 0.000000000000000000000000000000000000009178 159.0
YYD1_k127_4234395_0 Pfam:DUF2029 - - - 0.000000000000000000000000000000000000000000000000000000000007336 222.0
YYD1_k127_4234395_1 Single-strand binding protein family K03111 - - 0.000000000000000000000008458 104.0
YYD1_k127_4237082_0 Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002153 405.0
YYD1_k127_4237082_1 PFAM Trimethylamine methyltransferase (MTTB) K14083 - 2.1.1.250 0.0000000000000002814 84.0
YYD1_k127_4237082_2 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.0000002234 52.0
YYD1_k127_4257085_0 transposase IS116 IS110 IS902 family K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 351.0
YYD1_k127_4264873_0 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000005079 294.0
YYD1_k127_4264873_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.0000000000000000000000000000000000000000000000000000004966 206.0
YYD1_k127_4264873_2 Cytochrome b(N-terminal)/b6/petB - - - 0.00000000000000000000000000000000000000465 157.0
YYD1_k127_4264873_3 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.00000000000000000000000000000000000002346 151.0
YYD1_k127_4264873_4 COG2010 Cytochrome c, mono- and diheme variants K00406 - - 0.00000000000000000000905 99.0
YYD1_k127_4265337_0 phenylalanyl-tRNA synthetase beta subunit K01890 - 6.1.1.20 0.0 1075.0
YYD1_k127_4265337_1 Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily K01889 - 6.1.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004994 445.0
YYD1_k127_4265337_2 dienelactone hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003483 262.0
YYD1_k127_427259_0 Acyl-CoA dehydrogenase, C-terminal domain K00249 - 1.3.8.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004293 424.0
YYD1_k127_427259_1 PFAM ABC transporter K01995 - - 0.0000000000000000000000000000000000000000000000009812 178.0
YYD1_k127_427259_2 PFAM Collagen-binding surface protein Cna-like, B-type domain - - - 0.0000000000000000000000000000000000003437 161.0
YYD1_k127_4278214_0 Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone K03168 - 5.99.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009979 506.0
YYD1_k127_4278214_1 TIGRFAM DNA protecting protein DprA K04096 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005174 417.0
YYD1_k127_4278214_2 Nucleotidyl transferase K00971 - 2.7.7.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004916 381.0
YYD1_k127_4278214_3 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.00000000000000000000000000000000000006892 146.0
YYD1_k127_4281290_0 PFAM carbohydrate kinase K00854 - 2.7.1.17 3.339e-216 682.0
YYD1_k127_4281290_1 PFAM Xylose isomerase domain protein TIM barrel K01805 - 5.3.1.5 0.0000000000000000000000000000000000000000000000000008304 184.0
YYD1_k127_4281290_2 L-2-amino-thiazoline-4-carboxylic acid hydrolase - - - 0.0000000000000000000000000000001081 133.0
YYD1_k127_4281290_3 Leucine carboxyl methyltransferase - - - 0.000009026 49.0
YYD1_k127_4295248_0 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 1.534e-202 637.0
YYD1_k127_4295248_1 tetraacyldisaccharide 4'-kinase activity K09791 - - 0.000000000000000000000000009486 111.0
YYD1_k127_4295248_2 deoxyhypusine monooxygenase activity - - - 0.000000000000003418 83.0
YYD1_k127_4298762_0 PFAM peptidase S9 prolyl oligopeptidase active site domain protein - - - 8.232e-220 690.0
YYD1_k127_4316155_0 2-hydroxy-3-oxopropionate reductase K00042 - 1.1.1.60 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004085 349.0
YYD1_k127_4316155_1 Belongs to the peptidase S51 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009164 338.0
YYD1_k127_4316155_2 Uncharacterized protein conserved in bacteria (DUF2179) - - - 0.00000000000000000000000000000000000000000000000000000000000001024 224.0
YYD1_k127_4323231_0 Belongs to the cytidylate kinase family. Type 1 subfamily K00945 - 2.7.4.25 0.0000000000000000000000000000000000000000000000000000000000000000001019 236.0
YYD1_k127_4328909_0 PFAM Radical SAM K06871 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001888 353.0
YYD1_k127_4328909_1 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000000000004653 161.0
YYD1_k127_4328909_2 - - - - 0.00000000000003872 76.0
YYD1_k127_4339869_0 Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner K03596 - - 4.573e-307 949.0
YYD1_k127_4339869_1 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001364 454.0
YYD1_k127_4339869_2 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000009219 280.0
YYD1_k127_4339869_3 lysyltransferase activity K07027 - - 0.0000000000000000000000000000001309 137.0
YYD1_k127_4339869_4 Caspase domain - - - 0.0000000000000000000000000000001634 127.0
YYD1_k127_4339869_5 3-demethylubiquinone-9 3-O-methyltransferase activity - - - 0.000000000000000000004975 102.0
YYD1_k127_4339869_6 - - - - 0.0000000000004374 74.0
YYD1_k127_4339869_7 oligosaccharyl transferase activity K07151 - 2.4.99.18 0.0000000004603 70.0
YYD1_k127_4358281_0 helix_turn_helix, Lux Regulon K03556 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005071 366.0
YYD1_k127_4358281_1 response regulator - - - 0.00000000000000000000000001979 111.0
YYD1_k127_4364958_0 Transposase DDE domain group 1 - - - 0.00000000000000000000000000000000008359 152.0
YYD1_k127_4393728_0 Carbon starvation protein K06200 - - 2.569e-213 677.0
YYD1_k127_4393728_1 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000001273 167.0
YYD1_k127_4400321_0 Nitrite reductase K00368 - 1.7.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008142 337.0
YYD1_k127_4400321_1 response regulator K11624 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001204 251.0
YYD1_k127_4400321_2 Histidine kinase K07675,K11623 - 2.7.13.3 0.0000000000000000000000000000000000000000000000000000000001417 212.0
YYD1_k127_4400321_3 major facilitator superfamily - - - 0.00000003489 61.0
YYD1_k127_4417529_0 Belongs to the SEDS family - - - 6.368e-200 651.0
YYD1_k127_4417529_1 Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S- adenosylmethionine. Has broad substrate specificity with 6- aminopurine nucleosides as preferred substrates K00772 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004731,GO:0006082,GO:0006139,GO:0006144,GO:0006168,GO:0006520,GO:0006555,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009112,GO:0009113,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0017061,GO:0017144,GO:0018130,GO:0019438,GO:0019509,GO:0019752,GO:0034641,GO:0034654,GO:0042440,GO:0043094,GO:0043096,GO:0043101,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0055086,GO:0071265,GO:0071267,GO:0071704,GO:0072521,GO:0072522,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.4.2.28 0.00001427 48.0
YYD1_k127_4426777_0 methyltransferase activity - - - 0.00000000000000000001428 98.0
YYD1_k127_4426777_1 - - - - 0.0000000001785 68.0
YYD1_k127_445646_0 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001603 557.0
YYD1_k127_445646_1 Beta-lactamase enzyme family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 533.0
YYD1_k127_445646_2 SMART RNA-processing protein HAT helix repeating-containing protein - - - 0.00000000000000000000000000000001161 133.0
YYD1_k127_445919_0 Selenocysteine-specific translation elongation factor K03833 - - 4.858e-230 728.0
YYD1_k127_445919_1 peptidase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014 314.0
YYD1_k127_445919_2 Belongs to the ParB family K03497 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001707 293.0
YYD1_k127_445919_3 Proton-conducting membrane transporter - - - 0.0000000000000000000000000000000000000000000000000000000006372 213.0
YYD1_k127_445919_4 PFAM peptidase C60, sortase A and B K07284 - 3.4.22.70 0.0000000000000511 85.0
YYD1_k127_4483217_0 Transposase and inactivated derivatives - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004225 439.0
YYD1_k127_4483217_1 DNA replication protein - - - 0.00000000000000000000000000000000000000000000000000000000000000006862 231.0
YYD1_k127_4491302_0 Glycosyl hydrolase 36 superfamily, catalytic domain K13688 - - 0.000000000000000000000000000000000006323 149.0
YYD1_k127_4506235_0 AI-2E family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000142 223.0
YYD1_k127_4520741_0 PFAM FAD dependent oxidoreductase K00111 - 1.1.5.3 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002528 422.0
YYD1_k127_4520741_1 Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate K00864 GO:0003674,GO:0003824,GO:0004370,GO:0005975,GO:0006066,GO:0006071,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019751,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0071704,GO:1901615 2.7.1.30 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000008371 276.0
YYD1_k127_4544721_0 PFAM glycoside hydrolase, family 1 K05350 - 3.2.1.21 0.0000000000000000000000000000000002731 132.0
YYD1_k127_4544721_1 Glycerophosphoryl diester phosphodiesterase family K01126 - 3.1.4.46 0.00000000000000000000000000006084 121.0
YYD1_k127_4544721_2 Acetyltransferase (GNAT) domain - - - 0.0000000000004128 79.0
YYD1_k127_4561980_0 Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY K03106 - 3.6.5.4 1.621e-204 644.0
YYD1_k127_4561980_1 Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage K03553 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 575.0
YYD1_k127_4561980_10 An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes K02860 - - 0.000000000000000000000000000001842 126.0
YYD1_k127_4561980_11 Belongs to the UPF0109 family K06960 - - 0.0000000000000002691 80.0
YYD1_k127_4561980_12 Histone deacetylase superfamily - - - 0.00000004765 57.0
YYD1_k127_4561980_14 Major Facilitator Superfamily K02575 - - 0.000001536 51.0
YYD1_k127_4561980_2 PFAM ABC transporter transmembrane region K06147 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006875 563.0
YYD1_k127_4561980_3 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004727 544.0
YYD1_k127_4561980_4 WD40 domain protein beta Propeller K03641 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001811 526.0
YYD1_k127_4561980_5 ABC transporter, transmembrane region K06147,K18890 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003347 512.0
YYD1_k127_4561980_6 heme binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007653 376.0
YYD1_k127_4561980_7 PFAM DegV family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003754 301.0
YYD1_k127_4561980_9 Belongs to the bacterial ribosomal protein bS16 family K02959 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.00000000000000000000000000000000002466 137.0
YYD1_k127_4563898_0 transferase activity, transferring glycosyl groups - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015 385.0
YYD1_k127_4563898_1 transferase activity, transferring glycosyl groups K21011,K21012 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001292 309.0
YYD1_k127_4563898_2 Bacterial sugar transferase K19428 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009 300.0
YYD1_k127_4563898_3 spore germination K03298 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000004064 273.0
YYD1_k127_4563898_4 Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair K01356 - 3.4.21.88 0.0000000000000000000000000000000000000000000000000000000000000000000638 240.0
YYD1_k127_4563898_5 ABC transporter K06158 - - 0.00000000000000000000000000000000000000000000001993 179.0
YYD1_k127_4563898_6 PD-(D/E)XK nuclease superfamily - - - 0.00000000000000000000000000000000000000000003583 164.0
YYD1_k127_4577228_0 PFAM major facilitator superfamily MFS_1 K08223 - - 0.0000000000000000000000000000000000000000001817 171.0
YYD1_k127_4586416_0 Belongs to the class-I aminoacyl-tRNA synthetase family K01883 - 6.1.1.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 602.0
YYD1_k127_4586416_1 SMART Nucleotide binding protein, PINc - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004729 340.0
YYD1_k127_4586416_2 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03218 - 2.1.1.185 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009543 306.0
YYD1_k127_4586416_3 methyltransferase K17462 - - 0.0000000000000000000000000001113 123.0
YYD1_k127_4586416_4 Glycosyl transferase, family 2 K00721,K01912,K08301 - 2.4.1.83,6.2.1.30 0.0000000000000000000000000001867 129.0
YYD1_k127_4586416_5 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis K02358 - - 0.000000000000000000000000001261 115.0
YYD1_k127_4586416_6 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.000000000000000000000003807 107.0
YYD1_k127_4586416_7 Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) K03183 - 2.1.1.163,2.1.1.201 0.000000000001081 74.0
YYD1_k127_4586416_8 - - - - 0.0000117 50.0
YYD1_k127_4609287_0 Periplasmic binding protein domain K01999 - - 4.143e-215 677.0
YYD1_k127_4609287_1 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006555 419.0
YYD1_k127_4609287_2 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002126 369.0
YYD1_k127_4609287_3 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001504 324.0
YYD1_k127_4609287_4 Alpha beta hydrolase K01055 - 3.1.1.24 0.000000000000000000000000000000000000000000000000000000000000001664 223.0
YYD1_k127_4618003_0 ATPase associated with various cellular activities, AAA_5 K03696 - - 0.0 1326.0
YYD1_k127_4618003_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009077 488.0
YYD1_k127_4618003_2 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000002031 197.0
YYD1_k127_4618003_3 iron-sulfur cluster assembly - - - 0.000000000000000000000000001353 113.0
YYD1_k127_4618003_4 cyclic nucleotide binding K10914 - - 0.000000000000000000000009416 108.0
YYD1_k127_4641268_0 Catalyzes the oxidation of L-aspartate to iminoaspartate K00278 - 1.4.3.16 1.938e-215 682.0
YYD1_k127_4641268_1 Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate K03517 - 2.5.1.72 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002441 505.0
YYD1_k127_4641268_2 Belongs to the NadC ModD family K00767 - 2.4.2.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001829 298.0
YYD1_k127_4641268_3 carboxylic ester hydrolase activity - - - 0.0000000000000000000000000000000000000000000000000006034 193.0
YYD1_k127_4648828_0 Pkd domain containing protein - - - 0.000000000000000000000000007183 125.0
YYD1_k127_4648828_1 Peptidase family M23 - - - 0.00000000000006875 84.0
YYD1_k127_4648828_2 Belongs to the peptidase S16 family - - - 0.0000002238 53.0
YYD1_k127_4656134_0 Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001844 498.0
YYD1_k127_4656134_1 Belongs to the ABC transporter superfamily K02031 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007975 458.0
YYD1_k127_4656134_2 Belongs to the ABC transporter superfamily K02032,K10823 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009759 449.0
YYD1_k127_4656134_3 nitrogen compound transport K02033 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006658 445.0
YYD1_k127_4664380_0 Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) K02434 - 6.3.5.6,6.3.5.7 1.788e-248 778.0
YYD1_k127_4664380_1 PFAM Aminotransferase class I and II K00812 - 2.6.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007729 495.0
YYD1_k127_4664380_2 ABC-type multidrug transport system ATPase K01990 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009739 427.0
YYD1_k127_4664380_3 DNA alkylation repair enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000304 271.0
YYD1_k127_4664380_4 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000000000000000000000000000000000000001221 257.0
YYD1_k127_4664380_5 - K01992 - - 0.000000000000000000000000000000000000000000000000000000000005635 217.0
YYD1_k127_4664380_6 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000000000000000000000000000000000005406 210.0
YYD1_k127_4664380_7 D-aminopeptidase K16203 - - 0.0000000000000000000000000000000000000000000000000166 188.0
YYD1_k127_4668225_0 transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004655 408.0
YYD1_k127_467098_0 PFAM ABC transporter related K02056 - 3.6.3.17 1.577e-201 642.0
YYD1_k127_467098_1 Subtilase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001238 526.0
YYD1_k127_467098_2 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003234 447.0
YYD1_k127_467098_3 Belongs to the binding-protein-dependent transport system permease family K02057 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004053 395.0
YYD1_k127_467098_4 PFAM basic membrane lipoprotein K07335 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002549 349.0
YYD1_k127_4677460_0 - - - - 0.00000000000000000000000000003202 124.0
YYD1_k127_4677460_1 Transposase IS200 like - - - 0.0000000000000000000000000007125 117.0
YYD1_k127_4677460_2 - - - - 0.000000000000000000000001378 109.0
YYD1_k127_4677460_3 membrane - - - 0.000000000000001506 88.0
YYD1_k127_4677460_4 N-terminal domain of toast_rack, DUF2154 - - - 0.000000000218 70.0
YYD1_k127_4680112_0 Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) K01866 - 6.1.1.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003156 419.0
YYD1_k127_4680112_1 signal sequence binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001759 312.0
YYD1_k127_4680112_2 HNH endonuclease - - - 0.0000000000000005129 80.0
YYD1_k127_4680112_3 Sporulation protein YtfJ (Spore_YtfJ) - - - 0.00006586 51.0
YYD1_k127_4684307_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 2.918e-297 925.0
YYD1_k127_4684307_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001137 451.0
YYD1_k127_4684307_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000532 379.0
YYD1_k127_4684307_3 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003889 344.0
YYD1_k127_4684307_4 PFAM ABC transporter related K01995 - - 0.00000000000000000000000000000000000000000000000000001234 191.0
YYD1_k127_4691410_0 Belongs to the glycosyl hydrolase 13 family - - - 0.0 1883.0
YYD1_k127_4691410_1 WD-40 repeat - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001478 537.0
YYD1_k127_4691410_10 Copper chaperone PCu(A)C K09796 - - 0.0000000000000000000002018 102.0
YYD1_k127_4691410_11 Cytochrome c - - - 0.0000000000000000000002581 107.0
YYD1_k127_4691410_12 COG2010 Cytochrome c, mono- and diheme variants K02305 - - 0.0000000000003921 75.0
YYD1_k127_4691410_13 Putative Flp pilus-assembly TadE/G-like - - - 0.0001375 53.0
YYD1_k127_4691410_2 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 468.0
YYD1_k127_4691410_3 cutC copper transporter homolog (E. coli) K06201 GO:0000003,GO:0000041,GO:0002119,GO:0002164,GO:0003008,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0007275,GO:0007600,GO:0007610,GO:0008150,GO:0009791,GO:0009987,GO:0010035,GO:0010038,GO:0016043,GO:0018991,GO:0019098,GO:0019233,GO:0022414,GO:0022607,GO:0030001,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0035264,GO:0040007,GO:0040025,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046688,GO:0046872,GO:0046914,GO:0048513,GO:0048569,GO:0048589,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050877,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0098771 - 0.00000000000000000000000000000000000000000000000000000000000002735 222.0
YYD1_k127_4691410_4 Methylase involved in ubiquinone menaquinone biosynthesis - - - 0.0000000000000000000000000000000000000000000000000000005857 205.0
YYD1_k127_4691410_5 Bacterial transcriptional activator domain - - - 0.00000000000000000000000000000000000000000000000004102 207.0
YYD1_k127_4691410_6 Rieske [2Fe-2S] domain K02636 - 1.10.9.1 0.0000000000000000000000000000000000000000004899 163.0
YYD1_k127_4691410_7 Cytochrome c K17222 - - 0.000000000000000000000000000000000000000001089 166.0
YYD1_k127_4691410_8 - - - - 0.0000000000000000000000000000000000000002535 157.0
YYD1_k127_4691410_9 - - - - 0.000000000000000000000007433 106.0
YYD1_k127_4710218_0 PFAM band 7 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005655 334.0
YYD1_k127_4710218_1 Deoxynucleoside kinase K15518 - 2.7.1.113 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 295.0
YYD1_k127_4710218_3 GAF domain - - - 0.00000000000000000000000000000000000000000000000000586 196.0
YYD1_k127_4710218_4 Alpha beta hydrolase - - - 0.00000000000000000003474 92.0
YYD1_k127_4710218_5 Domain of unknown function (DUF4177) - - - 0.0003521 45.0
YYD1_k127_4724128_0 NADH-Ubiquinone oxidoreductase (complex I) chain 5 L domain protein K00341 - 1.6.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004632 337.0
YYD1_k127_4724128_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00338,K05580 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000004112 269.0
YYD1_k127_4724128_2 Belongs to the complex I subunit 6 family K00339 - 1.6.5.3 0.000000000000000000000000000000000004516 143.0
YYD1_k127_4724128_3 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient K00340 GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0050136,GO:0055114,GO:0070469,GO:0070470,GO:0071944,GO:0098796,GO:0098797,GO:0098803,GO:1902494,GO:1990204 1.6.5.3 0.000000000000000000000000000003017 124.0
YYD1_k127_4724128_4 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone K00337 - 1.6.5.3 0.000000000000005704 75.0
YYD1_k127_4726207_0 Major facilitator Superfamily K08217 - - 0.0000000000000000000000000000000000001104 147.0
YYD1_k127_4726207_1 Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met- O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide K07147 - - 0.000000000000001012 79.0
YYD1_k127_4726207_2 - - - - 0.0000000000001612 73.0
YYD1_k127_4731852_0 5'-nucleotidase, C-terminal domain - - - 0.0 1598.0
YYD1_k127_4731852_1 PFAM Thioredoxin domain K05838 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001787 286.0
YYD1_k127_4731852_2 cAMP phosphodiesterases class-II K01120 - 3.1.4.17 0.000000000000000000000000000000000000000000000000000000000000000000003556 235.0
YYD1_k127_4731852_3 Acetyltransferase (GNAT) domain - - - 0.00000000000000000000000000000000000001602 149.0
YYD1_k127_4731852_4 PFAM PilT protein domain protein - - - 0.000000000000000000000000000000001268 134.0
YYD1_k127_4731852_5 Putative modulator of DNA gyrase - - - 0.00000000000003316 75.0
YYD1_k127_4731852_6 - - - - 0.0002458 47.0
YYD1_k127_473638_0 Bacterial protein of unknown function (DUF885) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008105 522.0
YYD1_k127_473638_1 PFAM Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003146 297.0
YYD1_k127_473638_10 Glycosyl transferase 4-like domain - - - 0.00000437 58.0
YYD1_k127_473638_2 Transposase IS200 like - - - 0.00000000000000000000000000000000000000000000000003718 185.0
YYD1_k127_473638_3 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000007541 194.0
YYD1_k127_473638_4 - - - - 0.000000000000000000000000000000000000000000001344 172.0
YYD1_k127_473638_5 LysM domain - - - 0.0000000000000000000000000000000000000000001509 169.0
YYD1_k127_473638_6 serine threonine protein kinase K00870,K12132 - 2.7.1.37,2.7.11.1 0.000000000000000000000000000000001618 135.0
YYD1_k127_473638_7 Thioesterase superfamily - - - 0.0000000000000000000000000000007991 126.0
YYD1_k127_473638_8 Protein of unknown function (DUF2950) - - - 0.00000000000000000000000002057 110.0
YYD1_k127_473638_9 Belongs to the UPF0173 family - - - 0.000000000001827 76.0
YYD1_k127_4762502_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 - 3.6.3.8 1.603e-281 892.0
YYD1_k127_4762502_1 Peptidase family M50 K06212,K06402 GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005887,GO:0016020,GO:0016021,GO:0030312,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000331 506.0
YYD1_k127_4762502_10 Pyridoxamine 5'-phosphate oxidase K07006 - - 0.00000000000000000000002516 104.0
YYD1_k127_4762502_2 Alpha beta hydrolase fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009802 345.0
YYD1_k127_4762502_3 Belongs to the glycosyl hydrolase 13 family K01200 - 3.2.1.41 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008056 310.0
YYD1_k127_4762502_4 Pfam Polyketide cyclase dehydrase and lipid transport - - - 0.00000000000000000000000000000000000000000000000000000000001403 210.0
YYD1_k127_4762502_5 Uncharacterised protein, DegV family COG1307 - - - 0.00000000000000000000000000000000000000000000000000002167 198.0
YYD1_k127_4762502_6 PD-(D/E)XK nuclease superfamily - - - 0.000000000000000000000000000000000000000000000001474 177.0
YYD1_k127_4762502_7 DinB family - - - 0.00000000000000000000000000000000000000000003207 168.0
YYD1_k127_4762502_8 Redoxin - - - 0.000000000000000000000000000000000000000006398 156.0
YYD1_k127_4762502_9 Protein of unknown function (DUF1475) - - - 0.000000000000000000000000000000005722 132.0
YYD1_k127_4768062_0 argininosuccinate lyase K01755 GO:0003674,GO:0003824,GO:0004056,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016829,GO:0016840,GO:0016842,GO:0019752,GO:0042450,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 4.3.2.1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001932 562.0
YYD1_k127_4768062_1 Catalyzes the NADPH-dependent reduction of LysW - aminoadipate 6-phosphate to yield LysW -aminoadipate 6- semialdehyde K05829 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 480.0
YYD1_k127_4768062_10 TIGRFAM lysine biosynthesis protein LysW K05826 - - 0.000000000000000001767 86.0
YYD1_k127_4768062_11 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - - - 0.00000000006933 74.0
YYD1_k127_4768062_2 acetylornithine and succinylornithine aminotransferase K00821,K05830 - 2.6.1.11,2.6.1.17 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001316 480.0
YYD1_k127_4768062_3 Belongs to the argininosuccinate synthase family. Type K01940 - 6.3.4.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001126 451.0
YYD1_k127_4768062_4 Belongs to the RimK family K05827 - 6.3.2.43 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 428.0
YYD1_k127_4768062_5 Catalyzes the release of L-lysine from LysW -gamma-L- lysine K05831 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008161 374.0
YYD1_k127_4768062_6 Belongs to the acetylglutamate kinase family. LysZ subfamily K05828 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002166 338.0
YYD1_k127_4768062_7 HEAT repeats K03301 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 358.0
YYD1_k127_4768062_8 Helix-turn-helix domain K07219 - - 0.0000000000000000000000000000000000000000001382 173.0
YYD1_k127_4768062_9 signal-transduction protein containing cAMP-binding and CBS domains - - - 0.00000000000000000000000000000718 139.0
YYD1_k127_4773024_0 Beta-eliminating lyase - - - 1.739e-212 668.0
YYD1_k127_4773024_1 Belongs to the aspartokinase family K00928 - 2.7.2.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002708 580.0
YYD1_k127_4773024_10 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.000000000000008076 77.0
YYD1_k127_4773024_2 Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine K01733 - 4.2.3.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002457 553.0
YYD1_k127_4773024_3 Belongs to the aspartate-semialdehyde dehydrogenase family K00133 - 1.2.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002518 462.0
YYD1_k127_4773024_4 Rhodanese Homology Domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003075 334.0
YYD1_k127_4773024_5 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001409 307.0
YYD1_k127_4773024_6 Cytochrome P450 K05917 - 1.14.13.70 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001874 293.0
YYD1_k127_4773024_7 Nodulation protein S (NodS) - - - 0.000000000000000000000000000000000000000000000000000000004449 205.0
YYD1_k127_4773024_8 PFAM beta-lactamase domain protein - - - 0.000000000000000000000000000000000000000000000001056 181.0
YYD1_k127_4773024_9 - - - - 0.000000000000000000000000000000007635 139.0
YYD1_k127_478302_0 May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO K06187 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000007872 267.0
YYD1_k127_478302_1 Belongs to the bacterial solute-binding protein 9 family K02077,K09818 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008287 269.0
YYD1_k127_478302_2 YbaB/EbfC DNA-binding family K06187,K09747 GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:1901363 - 0.000000000000000000000000000002958 122.0
YYD1_k127_478302_3 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000002824 120.0
YYD1_k127_478302_4 - - - - 0.0000000000000001982 81.0
YYD1_k127_478302_5 - - - - 0.000000000000003283 78.0
YYD1_k127_478302_6 - - - - 0.000000000002573 66.0
YYD1_k127_4791951_0 PFAM glycosyl transferase, family 35 K00688 - 2.4.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005423 497.0
YYD1_k127_4791951_1 peptidase M29 aminopeptidase II K19689 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000516 448.0
YYD1_k127_4791951_2 DNA-templated transcription, initiation K03088 - - 0.00000000000000000000000000000000000000000001538 168.0
YYD1_k127_4791951_3 MFS_1 like family K08151,K08153 - - 0.00000000000000000000000000000000000000000003212 174.0
YYD1_k127_4791951_4 helix_turn_helix, Arsenical Resistance Operon Repressor K03892 - - 0.00000000000000000000000000001285 122.0
YYD1_k127_4791951_6 - - - - 0.0000266 55.0
YYD1_k127_479589_0 COG3119 Arylsulfatase A and related enzymes - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001225 310.0
YYD1_k127_479589_1 Belongs to the metallo-dependent hydrolases superfamily. NagA family K01443 - 3.5.1.25 0.000000000000000000000000000000000000000000000000000000000001091 219.0
YYD1_k127_479589_2 Oligopeptide/dipeptide transporter, C-terminal region K02032 - - 0.000000000000000000000001326 103.0
YYD1_k127_47997_0 Doubled CXXCH motif (Paired_CXXCH_1) - - - 0.00000000000000000000000000000000000005142 164.0
YYD1_k127_4806759_0 peptidase S8 and S53, subtilisin, kexin, sedolisin K20754 - 3.4.21.111 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001711 602.0
YYD1_k127_4806759_1 Major facilitator superfamily MFS_1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001468 516.0
YYD1_k127_4806759_2 3-demethylubiquinone-9 3-methyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005407 405.0
YYD1_k127_4806759_3 secreted hydrolase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001693 297.0
YYD1_k127_4806759_4 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.0000000000000000000000000000000000000000000000000000000000000000000000002093 255.0
YYD1_k127_4806759_5 SnoaL-like domain - - - 0.000000000000000000000000000000000008333 139.0
YYD1_k127_4806759_6 WD40 domain protein beta Propeller K03641 - - 0.000000000000000000001179 111.0
YYD1_k127_4806759_7 antibiotic catabolic process - - - 0.00000001094 69.0
YYD1_k127_4806759_8 - - - - 0.0000005358 58.0
YYD1_k127_4806759_9 PFAM thiamineS protein - - - 0.000003014 53.0
YYD1_k127_4807912_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008475 416.0
YYD1_k127_4824410_0 ABC transporter substrate-binding protein K02027,K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002988 488.0
YYD1_k127_4824410_1 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000001399 295.0
YYD1_k127_4824410_2 pyrroloquinoline quinone binding - - - 0.0000000000007309 70.0
YYD1_k127_4830036_0 Cytochrome C assembly protein K02198,K04016 GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564 - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004342 443.0
YYD1_k127_4830036_1 PFAM oxidoreductase, molybdopterin binding - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000577 358.0
YYD1_k127_4830036_2 Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH K02197 - - 0.00000000000000000000000000000000000000000000000000000000000001188 219.0
YYD1_k127_4830036_3 - - - - 0.00000000000000000000000000000000001529 147.0
YYD1_k127_4830036_4 Belongs to the UPF0173 family - - - 0.00002515 51.0
YYD1_k127_4844950_0 Oligopeptide/dipeptide transporter, C-terminal region K02031 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003309 424.0
YYD1_k127_4844950_1 Belongs to the ABC transporter superfamily K02032 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006794 405.0
YYD1_k127_4844950_2 nitrogen compound transport K02033 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004915 363.0
YYD1_k127_4844950_3 ABC-type dipeptide oligopeptide nickel transport systems, permease components K02034,K15582 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001895 270.0
YYD1_k127_4844950_4 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000001426 182.0
YYD1_k127_4844950_5 protein conserved in bacteria - - - 0.0001682 46.0
YYD1_k127_4867132_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 0.00000000000000000000000000000000000000000000000000000000000006472 215.0
YYD1_k127_4867132_1 Belongs to the CinA family K03742,K03743 - 3.5.1.42 0.00000000000000000000000000000000000000001778 159.0
YYD1_k127_4867132_2 Protein of unknown function (DUF2652) - - - 0.000000000000000007597 86.0
YYD1_k127_4867132_3 Phosphoglycerate mutase family K08296 - - 0.000005076 51.0
YYD1_k127_4867132_4 - - - - 0.00006664 48.0
YYD1_k127_4871600_0 Protein of unknown function (DUF1684) K09164 - - 0.0000000000000000000000000000000000000000000005587 171.0
YYD1_k127_4871600_1 Diaminopimelate epimerase K01778 - 5.1.1.7 0.0000000000000000000000000000000000002364 144.0
YYD1_k127_4871600_2 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000482 142.0
YYD1_k127_4871600_3 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000002494 102.0
YYD1_k127_4873506_0 Saccharopine dehydrogenase K00290 - 1.5.1.7 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001807 549.0
YYD1_k127_4873506_1 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307,K14387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000004142 255.0
YYD1_k127_4917541_0 Bacterial extracellular solute-binding protein K02027 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001175 512.0
YYD1_k127_4917541_1 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 415.0
YYD1_k127_4917541_2 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004367 317.0
YYD1_k127_4917541_3 helix_turn _helix lactose operon repressor K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001228 278.0
YYD1_k127_4917541_4 Highly conserved protein containing a thioredoxin domain K02027 - - 0.00000000000000001638 84.0
YYD1_k127_491962_0 protein kinase activity K12132 - 2.7.11.1 0.000000000000000000000000000000000000000000000000000000000000000002237 254.0
YYD1_k127_4927920_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.0 1103.0
YYD1_k127_4927920_1 Belongs to the glycosyl hydrolase 13 family K01214 - 3.2.1.68 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008499 609.0
YYD1_k127_4934113_0 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively K06215 - 4.3.3.6 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006698 530.0
YYD1_k127_4934113_1 PFAM band 7 protein - - - 0.00000000000000000000000000000000000000000000005429 174.0
YYD1_k127_4934113_2 PFAM regulatory protein GntR HTH K07979 - - 0.000000000000000000000000000001103 125.0
YYD1_k127_4934113_3 Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS K08681 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008614,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0032991,GO:0034641,GO:0042364,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1903600 4.3.3.6 0.00000000000000000000000000001064 119.0
YYD1_k127_4934247_0 Peptidoglycan-binding domain 1 protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003017 361.0
YYD1_k127_4934247_1 TIGRFAM cell envelope-related function transcriptional attenuator, LytR CpsA family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000007854 262.0
YYD1_k127_4934247_2 TIGRFAM conserved repeat domain - - - 0.0005045 47.0
YYD1_k127_4941190_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 - 5.99.1.3 1.594e-279 892.0
YYD1_k127_4941190_1 Belongs to the amidase family K01426 - 3.5.1.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 563.0
YYD1_k127_4941190_2 PFAM Rubrerythrin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000001715 250.0
YYD1_k127_4947271_0 phosphoglycerate mutase K15635 - 5.4.2.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001719 462.0
YYD1_k127_4947271_1 BPG-independent PGAM N-terminus (iPGM_N) K15633 - 5.4.2.12 0.00000000000000000000000000000000000001251 147.0
YYD1_k127_4952475_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003081 483.0
YYD1_k127_4952475_1 PFAM DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000003114 254.0
YYD1_k127_4952475_2 pyridoxamine 5-phosphate - - - 0.00000000000000000000000000000000000000000000000000001632 192.0
YYD1_k127_4952475_3 Belongs to the UPF0312 family - - - 0.0000000000000000000000000000000002651 139.0
YYD1_k127_4952475_4 Protein of unknown function (DUF952) K00799 - 2.5.1.18 0.0000000000000000000000000003894 116.0
YYD1_k127_4970919_0 PFAM secretion protein HlyD family protein K01993 - - 0.000000000000000000000000000000000000000000000000000008127 201.0
YYD1_k127_4970919_1 Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family - - - 0.000003397 56.0
YYD1_k127_4978430_0 transferase activity, transferring glycosyl groups - - - 0.000000000000000000000000000000000000000000000000000000000003472 214.0
YYD1_k127_4978430_2 Glycosyltransferase Family 4 - - - 0.000000000000000000000000000000000000000000003396 179.0
YYD1_k127_4980231_0 transposase activity - - - 0.00000000000000000000000008631 121.0
YYD1_k127_4980499_0 Transcriptional regulatory protein, C terminal K07667 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000005302 265.0
YYD1_k127_4980499_1 histidine kinase A domain protein K07646 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000005145 267.0
YYD1_k127_4980499_2 acetyltransferase K03789 - 2.3.1.128 0.0000000000000000000000000000285 122.0
YYD1_k127_4987708_0 SWIM zinc finger - - - 0.000000000000000000000000000000001576 130.0
YYD1_k127_4987708_1 PFAM Tetratricopeptide repeat - - - 0.00000000000000003452 97.0
YYD1_k127_4987708_2 to Saccharomyces cerevisiae CDC27 (YBL084C) K03350 GO:0000070,GO:0000151,GO:0000152,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016567,GO:0019538,GO:0019941,GO:0022402,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051276,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0090068,GO:0097159,GO:0098813,GO:0140014,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252 - 0.00000004512 67.0
YYD1_k127_4987708_3 Bacterial extracellular solute-binding proteins, family 5 Middle K02035,K15580 - - 0.0001815 45.0
YYD1_k127_5022212_0 helix_turn_helix, Lux Regulon K03556 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001236 313.0
YYD1_k127_5022212_1 Zinc-binding dehydrogenase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006588 294.0
YYD1_k127_5022212_2 stress-induced mitochondrial fusion - - - 0.000000000000002689 76.0
YYD1_k127_5024211_0 PFAM transposase, mutator type K07493 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005151 426.0
YYD1_k127_5029662_0 methyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002245 335.0
YYD1_k127_5029662_1 Putative peptidoglycan binding domain - - - 0.0000000000005811 79.0
YYD1_k127_5029662_2 PFAM Dienelactone hydrolase K01061 - 3.1.1.45 0.000000000002818 69.0
YYD1_k127_5034517_0 Binding-protein-dependent transport system inner membrane component K15581 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004002 319.0
YYD1_k127_5034517_1 ABC-type dipeptide oligopeptide nickel transport K02034,K15582 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000004306 284.0
YYD1_k127_5034517_2 ABC transporter permease K02033 - - 0.000000000000000000000000000000001862 151.0
YYD1_k127_5035813_0 Bacterial extracellular solute-binding protein K02020 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004223 320.0
YYD1_k127_5035813_1 TOBE domain K02019 - - 0.00000000000000000000003126 99.0
YYD1_k127_5063668_0 PFAM cytochrome c-type biogenesis protein CcmB K02194 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001413 329.0
YYD1_k127_5063668_1 PFAM Cytochrome C assembly protein K02195 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004677 301.0
YYD1_k127_5063668_2 - - - - 0.00000000000000000004633 101.0
YYD1_k127_5063668_3 PFAM ABC transporter related K02193 - 3.6.3.41 0.00000005062 56.0
YYD1_k127_5065260_0 ABC-type sugar transport system periplasmic component K02027,K05813 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008937 580.0
YYD1_k127_5065260_1 ABC-type sugar transport system, permease component K02026,K05815 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006447 371.0
YYD1_k127_5065260_2 Bacterial extracellular solute-binding protein K02027 - - 0.000000000000000000000000001193 131.0
YYD1_k127_5069303_0 Flavin containing amine oxidoreductase K09516 - 1.3.99.23 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 527.0
YYD1_k127_5069303_1 Major facilitator superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001121 319.0
YYD1_k127_5069303_2 B3 4 domain protein - - - 0.000000000000000000000000000000000000000000000007883 179.0
YYD1_k127_5069303_3 Belongs to the heat shock protein 70 family K04046 - - 0.00000001594 62.0
YYD1_k127_5072175_0 - - - - 0.00000000003957 69.0
YYD1_k127_5072175_1 PEP-CTERM system TPR-repeat lipoprotein - - - 0.000004536 60.0
YYD1_k127_508374_0 SPTR D1CI93 Phophonate C-P lyase system transcriptional regulator PhnF, GntR family K03710 - - 0.0000000000000000000000000000000000000000000000000002051 190.0
YYD1_k127_508374_1 KR domain - - - 0.000000000000000000000000000000000000000000000005575 177.0
YYD1_k127_508374_2 Methyltransferase type 11 - - - 0.00000000000000000000000000000000000000000004986 170.0
YYD1_k127_508374_3 methyltransferase activity K00587 - 2.1.1.100 0.0000000000000000000001156 106.0
YYD1_k127_5085757_0 TIGRFAM cation diffusion facilitator family transporter - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001135 378.0
YYD1_k127_5085757_1 Peptidoglycan-binding LysM - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004922 346.0
YYD1_k127_5085757_2 PFAM cytochrome c biogenesis protein, transmembrane region K06196 - - 0.0000000000000000000000000000000000001864 150.0
YYD1_k127_5085757_3 Dinitrogenase iron-molybdenum cofactor - - - 0.00000000000000000000000001432 117.0
YYD1_k127_5098209_0 Oligopeptidase F K08602 - - 2.629e-218 692.0
YYD1_k127_5098209_1 Sulfatase - - - 5.239e-205 648.0
YYD1_k127_5098209_10 cellulase activity - - - 0.000000000001078 80.0
YYD1_k127_5098209_11 Protein of unknown function (DUF3592) - - - 0.0000000000189 71.0
YYD1_k127_5098209_12 response regulator, receiver - - - 0.0000000006868 70.0
YYD1_k127_5098209_13 PFAM Sulfate transporter antisigma-factor antagonist STAS - - - 0.0003371 54.0
YYD1_k127_5098209_2 PFAM amidohydrolase K01468 - 3.5.2.7 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001022 582.0
YYD1_k127_5098209_3 oxidoreductase activity K07114 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001776 452.0
YYD1_k127_5098209_4 Response regulator, receiver K02487,K03407,K03413,K06596,K11526,K13490 GO:0003674,GO:0005488,GO:0005515,GO:0019904 2.7.13.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000002355 275.0
YYD1_k127_5098209_5 Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates K03787 - 3.1.3.5 0.000000000000000000000000000000000000000000000000000000000000000000000000006362 260.0
YYD1_k127_5098209_6 PFAM metal-dependent phosphohydrolase, HD sub domain K06950 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004157 254.0
YYD1_k127_5098209_7 PFAM inositol monophosphatase K01092 - 3.1.3.25 0.00000000000000000000000000000000000000000000000000000000000000004821 231.0
YYD1_k127_5098209_8 Sigma-70 region 2 K03088 - - 0.00000000000000000000000000000000000000000000000001947 184.0
YYD1_k127_5098209_9 - - - - 0.00000000000000000000000000000000000000000000006842 175.0
YYD1_k127_5106917_0 Protein of unknown function (DUF554) K07150 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000002925 300.0
YYD1_k127_5106917_1 PFAM Cobalamin adenosyltransferase K00798 - 2.5.1.17 0.00000000000000000000000000000000000000000000000000000000000000000001054 238.0
YYD1_k127_5106917_2 Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester K01975 - 3.1.4.58 0.000000000000000000000000000000000000000000000002326 180.0
YYD1_k127_5106917_3 PFAM GCN5-related N-acetyltransferase - - - 0.00000000000000000000000000000000000000000000003457 181.0
YYD1_k127_5106917_4 Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation K09710 - - 0.0000000000000000000000000000000002822 134.0
YYD1_k127_5106917_5 Thioredoxin - - - 0.000000000000000000000000000000001187 139.0
YYD1_k127_5106917_6 Clostripain family - - - 0.000000000000000000000000000002491 125.0
YYD1_k127_5106917_7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K07141 - 2.7.7.76 0.000000000000000000000000002585 114.0
YYD1_k127_5106917_8 4-vinyl reductase, 4VR K06382,K07013 - 3.1.3.16 0.000000002008 67.0
YYD1_k127_5124158_0 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003305 436.0
YYD1_k127_5124158_1 PFAM histone deacetylase superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000004321 242.0
YYD1_k127_5124158_2 PFAM Vitamin K epoxide reductase - - - 0.000000000000000000000000000000000000000000000000000000002944 211.0
YYD1_k127_5124158_3 oxidoreductase activity K07114 - - 0.000000000000000000000004742 119.0
YYD1_k127_5124158_4 histone H2A K63-linked ubiquitination - - - 0.000002337 61.0
YYD1_k127_5124158_5 protein secretion by the type VII secretion system - - - 0.00008066 55.0
YYD1_k127_5141020_0 PFAM Xylose isomerase domain protein TIM barrel K01805 - 5.3.1.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001351 573.0
YYD1_k127_5141020_1 PFAM CoA enzyme activase uncharacterised domain (DUF2229) - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003178 342.0
YYD1_k127_5141020_2 CoA-substrate-specific enzyme activase - - - 0.000001735 54.0
YYD1_k127_5162225_0 - - - - 0.00000000000000000000000000000000000000000000000000000000000000000001975 244.0
YYD1_k127_5165109_0 Binding-protein-dependent transport system inner membrane component K02063 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006082 531.0
YYD1_k127_5165109_1 ABC transporter K02010,K02052,K02062 - 3.6.3.30 0.0000000000000000000000000000000000000000000000000000000000000006756 224.0
YYD1_k127_516564_0 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.0000000000000000000000000006774 121.0
YYD1_k127_516564_1 carbohydrate transport K02027,K10117,K11751 - 3.1.3.5,3.6.1.45 0.000000000000000000000000003144 126.0
YYD1_k127_5194263_0 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 - 2.7.7.7 2.423e-214 697.0
YYD1_k127_5194263_2 PFAM TPR repeat-containing protein - - - 0.00000000000000000000000000000000000000000000000000000000000000009355 231.0
YYD1_k127_5194263_3 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000008962 211.0
YYD1_k127_5202452_0 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity K00303 - 1.5.3.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 311.0
YYD1_k127_5202452_1 PFAM GCN5-related N-acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000004409 251.0
YYD1_k127_5202452_2 transmembrane transporter activity K05820 - - 0.000000000000000000000000000000000000000000000000000000000000000008795 240.0
YYD1_k127_5202452_3 PFAM GCN5-related N-acetyltransferase - - - 0.000000000000000000000000000000000000000002928 160.0
YYD1_k127_5202452_4 (Pantothenic acid kinase)) K02173 - - 0.0000000000000000000000000000000001668 142.0
YYD1_k127_5202452_5 Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine K04127,K11325,K21174 - 5.1.1.17 0.000000001665 59.0
YYD1_k127_5202452_6 PFAM aminotransferase class V K04127 - 5.1.1.17 0.0000001918 55.0
YYD1_k127_520575_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001587 446.0
YYD1_k127_520575_1 Capsular polysaccharide biosynthesis protein - - - 0.00000006349 57.0
YYD1_k127_5211299_0 Acyltransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001275 347.0
YYD1_k127_5211299_1 Acyltransferase family - - - 0.00000000000000000000000000000000000000000484 167.0
YYD1_k127_5218333_0 nitrogen compound transport K02033 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000001293 288.0
YYD1_k127_5218333_1 Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000006988 98.0
YYD1_k127_5226476_0 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001833 533.0
YYD1_k127_5226476_1 TAP-like protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001575 297.0
YYD1_k127_5226476_2 ATPase histidine kinase DNA gyrase B HSP90 domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000001006 246.0
YYD1_k127_5226476_3 CAAX protease self-immunity - - - 0.00000000000000000000000000000000000000000000000000000000005085 214.0
YYD1_k127_5226476_4 N-terminal domain of toast_rack, DUF2154 - - - 0.000000000000000000000000000000007048 141.0
YYD1_k127_5226476_5 Bacterial extracellular solute-binding proteins, family 5 Middle K15580 - - 0.000000000000000000000000000003851 132.0
YYD1_k127_5237106_0 Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid K18235 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003516 437.0
YYD1_k127_5237106_1 NB-ARC domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001897 421.0
YYD1_k127_5237106_2 PFAM sigma-70 region 2 domain protein K03088 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000009309 301.0
YYD1_k127_5237106_3 - - - - 0.0000000000000000000000000000000000000000001675 166.0
YYD1_k127_5237106_4 chromosome segregation - - - 0.000000000000000000000000004589 116.0
YYD1_k127_5237106_5 Lysyl oxidase - - - 0.00001764 55.0
YYD1_k127_5244826_0 helix_turn_helix, Lux Regulon K03556 - - 0.000000000000000000000000000000000000007253 160.0
YYD1_k127_5277219_0 Pyruvate 2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006349 449.0
YYD1_k127_5277219_1 PFAM Glycerophosphoryl diester phosphodiesterase K01126 - 3.1.4.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004369 296.0
YYD1_k127_5277219_2 Stage II sporulation E family protein - - - 0.00000000000000000000000000000000000000000000000000000000007427 210.0
YYD1_k127_5277219_3 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000000003606 216.0
YYD1_k127_5277219_4 Histidine kinase - - - 0.000000000000000000000000000000000000000000000004232 189.0
YYD1_k127_5277219_5 Histidine kinase - - - 0.0000000000000000000000000000000000000000001419 179.0
YYD1_k127_5277219_6 Histidine kinase - - - 0.000000000000000000000000000000000000000003624 170.0
YYD1_k127_5277219_7 Histidine kinase - - - 0.00000000000000000000000000000001039 145.0
YYD1_k127_5277219_8 Histidine kinase - - - 0.0000000000001138 72.0
YYD1_k127_5277219_9 Rieske [2Fe-2S] domain K02636,K03886 - 1.10.9.1 0.000008192 54.0
YYD1_k127_5279751_0 Belongs to the PEP-utilizing enzyme family K01006 - 2.7.9.1 0.0 1469.0
YYD1_k127_5279751_1 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 5.071e-237 750.0
YYD1_k127_5279751_2 Binding-protein-dependent transport system inner membrane component K02050 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000467 358.0
YYD1_k127_5279751_3 Formate/nitrite transporter K06212 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002983 357.0
YYD1_k127_5279751_4 ErfK ybiS ycfS ynhG family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008272 362.0
YYD1_k127_5279751_5 ATPases associated with a variety of cellular activities K02049 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001304 343.0
YYD1_k127_5279751_6 PFAM UbiA prenyltransferase K03179 - 2.5.1.39 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002669 282.0
YYD1_k127_5279751_7 PDZ DHR GLGF domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000001937 259.0
YYD1_k127_5279751_8 Putative regulatory protein - - - 0.00000000007725 64.0
YYD1_k127_5279751_9 sequence-specific DNA binding - - - 0.0000000001567 65.0
YYD1_k127_5282082_0 CoA-substrate-specific enzyme activase - - - 0.0 1170.0
YYD1_k127_5282082_1 helix_turn_helix, Lux Regulon K03556 - - 0.00000000000000000000000007778 111.0
YYD1_k127_5282082_2 N-terminal 7TM region of histidine kinase - - - 0.000000005047 69.0
YYD1_k127_5307482_0 Enoyl-(Acyl carrier protein) reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006707 308.0
YYD1_k127_5307482_1 Flavodoxin domain K00230 - 1.3.5.3 0.000000000000000000000000000000000000000001009 164.0
YYD1_k127_5307482_2 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 - - 0.00000000000000000000000000000007054 141.0
YYD1_k127_5307482_3 Psort location Cytoplasmic, score - - - 0.000000000000000007363 87.0
YYD1_k127_5307482_4 - - - - 0.00000000002351 68.0
YYD1_k127_5309993_0 PFAM Biotin lipoate A B protein ligase K03800 - 6.3.1.20 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001883 302.0
YYD1_k127_5309993_1 PFAM dihydrodipicolinate synthetase K01714,K21062 - 3.5.4.22,4.3.3.7 0.00000000000000000000000000000000000000000000000000006933 199.0
YYD1_k127_5309993_2 Protein of unknown function (DUF4230) - - - 0.00000000000000000000000000000000002075 143.0
YYD1_k127_5309993_3 sequence-specific DNA binding - - - 0.00000000000000000000000007464 112.0
YYD1_k127_5309993_4 Protein of unknown function (DUF503) K09764 - - 0.0000000000000000000000007042 107.0
YYD1_k127_5310947_0 Two component transcriptional regulator, LuxR family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000003052 248.0
YYD1_k127_5310947_1 Two component transcriptional regulator, LuxR family - - - 0.000000000000000000001128 101.0
YYD1_k127_5310947_2 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000006883 75.0
YYD1_k127_5317900_0 amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) K01870 - 6.1.1.5 3.415e-234 734.0
YYD1_k127_5317900_1 Belongs to the peptidase S26 family K03100 - 3.4.21.89 0.00000000000000000000000000000000000000000000000000000005251 203.0
YYD1_k127_5317900_2 PFAM NUDIX hydrolase K01515 - 3.6.1.13 0.00000000000000000000000000000000000000000000000006734 183.0
YYD1_k127_5317900_3 LysM domain K07273,K22278 - 3.5.1.104 0.0000000000000000000000000008806 121.0
YYD1_k127_5327768_0 Mo-molybdopterin cofactor metabolic process K03148,K03636,K21029,K21147 GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006732,GO:0006777,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009108,GO:0009605,GO:0009607,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0018130,GO:0019344,GO:0019538,GO:0019637,GO:0019720,GO:0019752,GO:0020012,GO:0030312,GO:0030682,GO:0042783,GO:0043170,GO:0043207,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051810,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0061605,GO:0070566,GO:0071704,GO:0071944,GO:0075136,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 2.7.7.73,2.7.7.80,2.8.1.11 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001724 481.0
YYD1_k127_5327768_1 Adenosine specific kinase K09129 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000007377 268.0
YYD1_k127_5327768_2 Belongs to the Nudix hydrolase family - - - 0.00000000000000000000000000008182 120.0
YYD1_k127_5327768_3 thiazole biosynthesis adenylyltransferase ThiF K03148,K21029 - 2.7.7.73,2.7.7.80 0.000000000000000001135 88.0
YYD1_k127_5332665_0 Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group K02257 GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0015980,GO:0016740,GO:0016765,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0045333,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 2.5.1.141 0.0000000000000000000000000000000000004942 150.0
YYD1_k127_5332665_1 Sulfatase-modifying factor enzyme 1 - GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005509,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016667,GO:0016670,GO:0018158,GO:0019538,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046872,GO:0046914,GO:0055114,GO:0071704,GO:0120147,GO:1901564,GO:1903135 - 0.0000000000000000000000002831 112.0
YYD1_k127_5346805_0 Peptidase family M28 K13049 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005749 327.0
YYD1_k127_5346805_1 Putative FMN-binding domain K07734 - - 0.000000000000000000000000000000000000000000003109 170.0
YYD1_k127_5346805_2 Nucleotidyl transferase AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000002683 114.0
YYD1_k127_5346805_3 PFAM RNP-1 like RNA-binding protein - - - 0.0000000000000000000009772 97.0
YYD1_k127_5346805_4 Domain of unknown function (DUF3597) - - - 0.0000000000000008292 81.0
YYD1_k127_5346805_6 CAAX protease self-immunity K07052 - - 0.000004022 58.0
YYD1_k127_5349476_0 endonuclease exonuclease phosphatase K07004 - - 9.916e-253 806.0
YYD1_k127_5349476_1 Phosphotransferase enzyme family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001054 418.0
YYD1_k127_5349476_2 Acyl-CoA dehydrogenase, C-terminal domain - - - 0.000000000000000005281 83.0
YYD1_k127_5351553_0 transferase activity, transferring acyl groups other than amino-acyl groups - - - 0.00000000000000000000000000000000000000000001143 171.0
YYD1_k127_5351553_1 Phage Tail Collar Domain - - - 0.000000000000000000000000000000000000003182 148.0
YYD1_k127_5351553_2 3-demethylubiquinone-9 3-O-methyltransferase activity K03428 - 2.1.1.11 0.000000000000000000000000000000000002262 145.0
YYD1_k127_5357480_0 Molydopterin dinucleotide binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000764 433.0
YYD1_k127_5357480_1 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.000000000000000000000000000000000000000000000000000000000000000000009093 250.0
YYD1_k127_5357480_2 Cytochrome c7 and related cytochrome c - - - 0.0000000000000000000000000000000000000000000004154 171.0
YYD1_k127_5357480_3 - - - - 0.0001209 45.0
YYD1_k127_5369478_0 AAA domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003193 410.0
YYD1_k127_5369478_1 carbohydrate transport K02027,K10117,K11751 - 3.1.3.5,3.6.1.45 0.0000000000000000000001051 112.0
YYD1_k127_5392363_0 Transmembrane secretion effector - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008329 372.0
YYD1_k127_5392363_1 Belongs to the DEAD box helicase family K05592 - 3.6.4.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000009639 276.0
YYD1_k127_5392363_2 methyltransferase - - - 0.000000000000000000000000000000001738 137.0
YYD1_k127_5405631_0 VIT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003636 405.0
YYD1_k127_5405631_1 Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily K17828 - 1.3.1.14 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000004074 300.0
YYD1_k127_5405631_2 Patatin-like phospholipase K07001 - - 0.00000000000000000000000000000000000000000005147 171.0
YYD1_k127_5405631_3 TIGRFAM drug resistance transporter, EmrB QacA subfamily - - - 0.00000000000000000001059 95.0
YYD1_k127_5413559_0 TIGRFAM methylmalonyl-CoA mutase, large subunit K01848 - 5.4.99.2 2.216e-252 790.0
YYD1_k127_5413559_1 Protein of unknown function (DUF2961) - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002048 373.0
YYD1_k127_5413559_2 Phosphofructokinase K21071 - 2.7.1.11,2.7.1.90 0.00000000000000000000000000000000000000000003981 162.0
YYD1_k127_5413559_3 - - - - 0.00006045 46.0
YYD1_k127_542050_0 KAP family P-loop domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008488 305.0
YYD1_k127_542050_1 Regulator of chromosome condensation (RCC1) repeat - - - 0.00008369 49.0
YYD1_k127_5425667_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005216 344.0
YYD1_k127_5425667_1 methyltransferase K03183 - 2.1.1.163,2.1.1.201 0.00000000000000000000000000000000000000000000000000004608 197.0
YYD1_k127_5425667_2 Uridine phosphorylase K00757 - 2.4.2.3 0.000000000000000000000000000000000000000003278 164.0
YYD1_k127_5426511_0 Glycosyl hydrolases family 35 K12308 - 3.2.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001167 569.0
YYD1_k127_5426511_1 Belongs to the glycosyl hydrolase 30 family K01201 - 3.2.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321 505.0
YYD1_k127_5426511_2 PFAM ROK family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000003871 265.0
YYD1_k127_5458757_0 intracellular signal transduction - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003531 492.0
YYD1_k127_5466664_0 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K01845 - 5.4.3.8 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002565 556.0
YYD1_k127_5466664_1 Belongs to the ALAD family K01698 - 4.2.1.24 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001917 456.0
YYD1_k127_5466664_2 Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III K01599 GO:0003674,GO:0003824,GO:0004853,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.1.37 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001355 451.0
YYD1_k127_5466664_3 Iron-sulfur cluster-binding domain K22227 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004379 411.0
YYD1_k127_5466664_4 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX K00231 - 1.3.3.15,1.3.3.4 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009834 405.0
YYD1_k127_5466664_5 Catalyzes the ferrous insertion into protoporphyrin IX K01772 - 4.99.1.1,4.99.1.9 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000003533 304.0
YYD1_k127_5466664_6 peroxidase activity K09162 GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0016701,GO:0016702,GO:0042597,GO:0044464,GO:0050587,GO:0051213,GO:0055114 1.13.11.49 0.00000000000000000000000000000000000000000000000000000001445 205.0
YYD1_k127_5482092_0 cyclic nucleotide binding K15762 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008967 410.0
YYD1_k127_5496429_0 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism K00600 - 2.1.2.1 1.389e-226 712.0
YYD1_k127_5496429_1 Lamin Tail Domain K07004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001447 512.0
YYD1_k127_5496429_2 Domain of unknown function (DUF4162) K01990 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001511 267.0
YYD1_k127_5496429_3 Putative membrane peptidase family (DUF2324) - - - 0.00000000000000000008928 104.0
YYD1_k127_5496429_4 COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component K01992 - - 0.00000000000000007567 94.0
YYD1_k127_5496429_5 Negative regulatory protein YxlE - - - 0.00000000000001006 76.0
YYD1_k127_5503303_0 - - - - 0.00000000000000000000000006253 116.0
YYD1_k127_5503303_1 4Fe-4S binding domain - - - 0.000000000031 66.0
YYD1_k127_551382_0 ATP synthesis coupled electron transport K00336 GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0009405,GO:0010941,GO:0016020,GO:0016491,GO:0016651,GO:0030312,GO:0033668,GO:0035821,GO:0042981,GO:0043067,GO:0043069,GO:0044003,GO:0044068,GO:0044403,GO:0044419,GO:0044464,GO:0044531,GO:0044532,GO:0048037,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051536,GO:0051540,GO:0051701,GO:0051704,GO:0051817,GO:0052040,GO:0052041,GO:0052150,GO:0052248,GO:0052433,GO:0052490,GO:0055114,GO:0060548,GO:0065007,GO:0071944 1.6.5.3 2.882e-277 865.0
YYD1_k127_551382_1 NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain K00335 - 1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000002926 247.0
YYD1_k127_5519967_0 Periplasmic binding protein LacI transcriptional regulator K02529 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001139 312.0
YYD1_k127_5519967_1 PFAM extracellular solute-binding protein family 5 K02035 - - 0.000000000000000000000000000000000000000000000000000000000000000009498 236.0
YYD1_k127_5519967_2 ABC-type dipeptide transport system periplasmic component K02035 - - 0.0000000000000000000000000000000000000000000000000000000000001803 223.0
YYD1_k127_5519967_3 Fibronectin type III domain - - - 0.0000000000000000003298 99.0
YYD1_k127_5523661_0 tagaturonate epimerase K21619 - 5.1.2.7 7.012e-195 618.0
YYD1_k127_5523661_1 creatininase K01470 - 3.5.2.10 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002645 368.0
YYD1_k127_5523661_2 Oxidoreductase family, C-terminal alpha/beta domain K00010 - 1.1.1.18,1.1.1.369 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006112 365.0
YYD1_k127_5523661_3 Haloacid dehalogenase-like hydrolase K07025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000006472 299.0
YYD1_k127_5523661_4 helix_turn _helix lactose operon repressor K05499 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006885 284.0
YYD1_k127_5523661_5 alcohol dehydrogenase K00004,K00008 - 1.1.1.14,1.1.1.303,1.1.1.4 0.0000000000000000000000000000000000000000000000000002998 198.0
YYD1_k127_5523661_6 HAD-hyrolase-like - - - 0.00000000000000000000000000000000000000009344 156.0
YYD1_k127_5523661_7 BPG-independent PGAM N-terminus (iPGM_N) K15633 - 5.4.2.12 0.00000005289 55.0
YYD1_k127_5523661_8 von Willebrand factor (vWF) type A domain - - - 0.0000001466 53.0
YYD1_k127_5530231_0 Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA K04066 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 351.0
YYD1_k127_5530231_1 - - - - 0.0000000000007542 78.0
YYD1_k127_5553922_0 Alpha amylase, catalytic domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003677 371.0
YYD1_k127_5553922_1 Major facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001554 318.0
YYD1_k127_5553922_2 COG2931 RTX toxins and related Ca2 -binding proteins K11005 - - 0.00000000000000000000000000000000000000000000000002204 183.0
YYD1_k127_5571557_0 PFAM Transposase DDE domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006595 415.0
YYD1_k127_5571557_1 COG3209 Rhs family protein - - - 0.000000000000000000002349 104.0
YYD1_k127_5585748_0 FAD linked oxidases, C-terminal domain K00104 - 1.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003104 479.0
YYD1_k127_5585748_1 Belongs to the LDH2 MDH2 oxidoreductase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001665 376.0
YYD1_k127_5585748_2 4fe-4S ferredoxin, iron-sulfur binding domain protein K11473 - - 0.00000000000000000000000000000000000000000000000000000000001189 212.0
YYD1_k127_5585748_3 Transcriptional regulator K13641 - - 0.000000000000000000000000000000000000000000000000000044 194.0
YYD1_k127_5586732_0 fad dependent oxidoreductase K07222 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003362 468.0
YYD1_k127_5586732_1 Thioredoxin reductase K07222 - - 0.00000000000000000000000000000001159 128.0
YYD1_k127_5586732_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000000000000008598 120.0
YYD1_k127_5586732_3 PFAM Cyclic nucleotide-binding K10914 - - 0.0002743 47.0
YYD1_k127_5612934_0 Transposase IS66 family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000001379 301.0
YYD1_k127_5612934_1 serine-type endopeptidase activity - - - 0.0000000000000000000000000000000000000000000000001219 187.0
YYD1_k127_5612934_2 Belongs to the glycosyl hydrolase 13 family - - - 0.000000000000000000000000000000000000000000614 160.0
YYD1_k127_5657854_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003464 381.0
YYD1_k127_5657854_1 Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) K00937 - 2.7.4.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005411 330.0
YYD1_k127_5663257_0 ROK family K00886 - 2.7.1.63 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001183 311.0
YYD1_k127_5663257_1 Belongs to the NiFe NiFeSe hydrogenase large subunit family K14126 - 1.8.98.5 0.0000000000000000000000000000000000000000000000000000000000000000000002499 255.0
YYD1_k127_5663257_2 synthase III K16872 - 2.3.1.207 0.00001202 57.0
YYD1_k127_568248_0 NACHT domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000298 347.0
YYD1_k127_568248_1 candidate polyfunctional acetylxylan esterase b-xylosidase A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238 - - - 0.000002359 57.0
YYD1_k127_5684505_0 Glycosyl hydrolases family 32 K01193,K03332 - 3.2.1.26,3.2.1.80 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005183 356.0
YYD1_k127_5684505_1 CAAX protease self-immunity K07052 - - 0.00000000000000000000000000000000006173 145.0
YYD1_k127_5717266_0 PFAM Transposase DDE domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004652 467.0
YYD1_k127_5717266_1 Trypsin-like serine protease - - - 0.00000000000000009947 81.0
YYD1_k127_5718091_0 PFAM Binding-protein-dependent transport system inner membrane component K02025,K17242 - - 0.0000000000000000000000000000000000000000000000000000000000000000006727 239.0
YYD1_k127_5718091_1 ABC-type sugar transport system, permease component - - - 0.0000000000000000000000000000000000000000000000001283 185.0
YYD1_k127_5718091_2 Carbohydrate ABC transporter substrate-binding protein, CUT1 family K02027 - - 0.000000000000000000000000000000000000000002858 172.0
YYD1_k127_5718624_0 Domain of unknown function (DUF4395) - - - 0.00000000000000000000000000000000000000000000002367 175.0
YYD1_k127_5718624_1 COG0526, thiol-disulfide isomerase and thioredoxins K03671 - - 0.00000000000000000000000005901 112.0
YYD1_k127_5734848_0 ATP-dependent transcriptional regulator K03556 - - 0.0000000000000000000000000000117 133.0
YYD1_k127_574851_0 ABC transporter (Permease K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000002417 235.0
YYD1_k127_574851_1 Belongs to the binding-protein-dependent transport system permease family K01998,K11961 - - 0.00000000000000000000000000000000000000000000000003381 194.0
YYD1_k127_574851_2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella - - - 0.00000006261 64.0
YYD1_k127_5752561_0 Putative glucoamylase K13688 - - 2.17e-238 779.0
YYD1_k127_5752561_1 WD-40 repeat - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009246 494.0
YYD1_k127_5752561_2 PFAM glycoside hydrolase family 5 K01179 - 3.2.1.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006567 449.0
YYD1_k127_5752561_3 helix_turn_helix, mercury resistance - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000007981 263.0
YYD1_k127_5752561_4 Universal stress protein family - - - 0.00000000000000000000000003486 121.0
YYD1_k127_5752561_5 Psort location CytoplasmicMembrane, score K12132 - 2.7.11.1 0.000000000000000000000009847 119.0
YYD1_k127_575346_0 Pfam Adenylate and Guanylate cyclase catalytic domain K01768 - 4.6.1.1 2.082e-201 676.0
YYD1_k127_575346_1 membrane K13277,K15125,K15539 - - 0.0000000000000000000000000000000000000000000000000000000000004151 242.0
YYD1_k127_575346_2 mRNA catabolic process K06950 - - 0.0000000000000000000000000000000000000000000000001399 183.0
YYD1_k127_575346_3 Transmembrane secretion effector - - - 0.0000000000000000000000000000000000000000002302 179.0
YYD1_k127_575346_4 nucleoside hydrolase - - - 0.0000000000000000000000000000000000000000006091 183.0
YYD1_k127_575346_5 Patatin-like phospholipase K07001 - - 0.0000005178 63.0
YYD1_k127_5768506_0 that it carries out the mismatch recognition step. This protein has a weak ATPase activity K03555 GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391 - 2.201e-249 796.0
YYD1_k127_5768506_1 Spermine/spermidine synthase domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532 581.0
YYD1_k127_5768506_10 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000009423 287.0
YYD1_k127_5768506_11 Inner membrane component of T3SS, cytoplasmic domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000522 264.0
YYD1_k127_5768506_12 PFAM regulatory protein TetR - - - 0.00000000000000000000000000000000000000000000000000000003761 201.0
YYD1_k127_5768506_13 Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell K03282 GO:0003674,GO:0005215,GO:0005575,GO:0006810,GO:0006811,GO:0006884,GO:0008150,GO:0008361,GO:0008381,GO:0009987,GO:0009992,GO:0015267,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0022803,GO:0022836,GO:0022857,GO:0030104,GO:0031224,GO:0032535,GO:0042592,GO:0044425,GO:0048878,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071840,GO:0090066 - 0.0000000000000000000000000000000000000000000000000003846 187.0
YYD1_k127_5768506_14 Protein of unknown function (DUF1461) - - - 0.000000000000000000000000000000000000000000000009874 180.0
YYD1_k127_5768506_15 Ring-cleavage extradiol dioxygenase - - - 0.00000000000000000000000000000000006926 141.0
YYD1_k127_5768506_16 Uncharacterised nucleotidyltransferase - - - 0.00000000005176 74.0
YYD1_k127_5768506_2 PFAM Amidohydrolase 3 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001499 567.0
YYD1_k127_5768506_3 PFAM ABC transporter related K10112 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003016 547.0
YYD1_k127_5768506_4 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002024 478.0
YYD1_k127_5768506_5 Belongs to the peptidase S16 family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007055 448.0
YYD1_k127_5768506_6 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006458 387.0
YYD1_k127_5768506_7 Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate K01834 - 5.4.2.11 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002206 381.0
YYD1_k127_5768506_8 PFAM NAD-dependent epimerase dehydratase K00091 - 1.1.1.219 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000476 355.0
YYD1_k127_5768506_9 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain K01872 GO:0003674,GO:0003824,GO:0004812,GO:0004813,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006418,GO:0006419,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0031406,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001633 279.0
YYD1_k127_5779107_0 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates K01937 - 6.3.4.2 1.414e-288 894.0
YYD1_k127_5779107_1 Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis K01689 - 4.2.1.11 2.825e-234 729.0
YYD1_k127_5779107_10 light absorption K07255,K21700 - - 0.000000000000000000000000000000000000000000000007447 174.0
YYD1_k127_5779107_11 Membrane transport protein K07088 - - 0.0000000000000000000000000000000000000008212 160.0
YYD1_k127_5779107_12 Domain of unknown function (DUF1905) - - - 0.0000000000000000000000000000003483 124.0
YYD1_k127_5779107_13 Belongs to the acylphosphatase family K01512 - 3.6.1.7 0.000000000000000000000009254 103.0
YYD1_k127_5779107_14 ErfK ybiS ycfS ynhG family protein - - - 0.00000000000000003218 90.0
YYD1_k127_5779107_15 PFAM Formylglycine-generating sulfatase enzyme K12132 - 2.7.11.1 0.0000000008566 63.0
YYD1_k127_5779107_2 Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site K03723 - - 3.777e-230 732.0
YYD1_k127_5779107_3 SMART PDZ DHR GLGF domain protein K11749 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001466 289.0
YYD1_k127_5779107_4 Belongs to the UPF0758 family K03630 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000108 280.0
YYD1_k127_5779107_5 PBS lyase HEAT domain protein repeat-containing protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000001309 251.0
YYD1_k127_5779107_6 The natural substrate for this enzyme may be peptidyl- tRNAs which drop off the ribosome during protein synthesis K01056 GO:0003674,GO:0003824,GO:0004045,GO:0016787,GO:0016788,GO:0052689,GO:0140098,GO:0140101 3.1.1.29 0.00000000000000000000000000000000000000000000000000000000000000000004048 239.0
YYD1_k127_5779107_7 Peptidase MA superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000001335 235.0
YYD1_k127_5779107_8 exodeoxyribonuclease I activity - - - 0.000000000000000000000000000000000000000000000000000000000000002618 224.0
YYD1_k127_5779107_9 Acetyltransferase (GNAT) domain - - - 0.0000000000000000000000000000000000000000000000000000005308 198.0
YYD1_k127_5782339_0 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000172 422.0
YYD1_k127_5787789_0 PFAM UbiA prenyltransferase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002881 322.0
YYD1_k127_5787789_1 Ribosomal RNA methyltransferase RrmJ FtsJ K06442 - 2.1.1.226,2.1.1.227 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005136 305.0
YYD1_k127_5787789_2 Caspase domain - - - 0.00000000000000000000000000000000000000000000000000138 201.0
YYD1_k127_5787789_3 TIGRFAM mevalonate kinase K00869 - 2.7.1.36 0.00000000001248 69.0
YYD1_k127_578907_0 Belongs to the alpha-IPM synthase homocitrate synthase family K01649 - 2.3.3.13 1.076e-232 728.0
YYD1_k127_578907_1 Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate K00052 GO:0003674,GO:0003824,GO:0003862,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009987,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607 1.1.1.85 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002806 509.0
YYD1_k127_578907_2 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002852 419.0
YYD1_k127_578907_3 Anion-transporting ATPase K01551 - 3.6.3.16 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000256 370.0
YYD1_k127_578907_4 amino acid-binding ACT domain protein K04518 - 4.2.1.51 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001979 348.0
YYD1_k127_578907_5 PFAM deoxynucleoside kinase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001102 319.0
YYD1_k127_578907_6 Enoyl-(Acyl carrier protein) reductase K00059,K00068 - 1.1.1.100,1.1.1.140 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008381 314.0
YYD1_k127_578907_7 Phosphoribosyl transferase domain K02825 - 2.4.2.9 0.00000000000000000000000001813 111.0
YYD1_k127_578907_8 Protein of unknown function (DUF434) - - - 0.00000000000008009 76.0
YYD1_k127_5791024_0 ATPase family associated with various cellular activities (AAA) K03924 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 332.0
YYD1_k127_5791024_1 nuclear chromosome segregation - - - 0.00000000003538 75.0
YYD1_k127_5794375_0 Methyltransferase domain - - - 0.0000000000000000000000000000000000000000000000000000006908 202.0
YYD1_k127_5794375_1 methyltransferase - - - 0.00000000000004339 75.0
YYD1_k127_5797686_0 CO dehydrogenase flavoprotein C-terminal domain K03519 - 1.2.5.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002542 340.0
YYD1_k127_5797686_1 PFAM Glyoxalase bleomycin resistance protein dioxygenase K05606 - 5.1.99.1 0.0000000000000000000000000000000000000000000000001666 181.0
YYD1_k127_5797686_2 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000000000000000000000000000000001225 178.0
YYD1_k127_5797686_3 TIGRFAM methylmalonyl-CoA mutase, large subunit K01847,K01848 - 5.4.99.2 0.00000000000000000000000000000000000000000000004953 172.0
YYD1_k127_5799160_0 4Fe-4S binding domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000002909 257.0
YYD1_k127_5799160_1 O-methyltransferase - - - 0.000000000000000000005643 96.0
YYD1_k127_580471_0 NAD(P)H-binding K01784 - 5.1.3.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000375 429.0
YYD1_k127_581889_0 type II secretion system protein E K02283 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004303 488.0
YYD1_k127_581889_1 SMART Integrin alpha beta-propellor repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008622 407.0
YYD1_k127_581889_2 Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo- MPT) cofactor (Moco or molybdenum cofactor) to form Mo- molybdopterin guanine dinucleotide (Mo-MGD) cofactor K03752 - 2.7.7.77 0.000000000000000000000000000000000000000000000000000000005038 205.0
YYD1_k127_581889_3 TIGRFAM addiction module antidote protein, HigA family K21498 - - 0.000000000000006787 77.0
YYD1_k127_581889_4 WD-40 repeat - - - 0.00000007288 61.0
YYD1_k127_5846782_0 TIGRFAM RNA polymerase sigma factor, sigma-70 family K03088 - - 0.0000000000000000000000000000004709 129.0
YYD1_k127_5846782_1 pyrroloquinoline quinone binding - - - 0.00000000000000000001124 94.0
YYD1_k127_5859641_0 ISFtu1 transposase K01152 - - - 0.00000000000000000000000000000000000000000000000000000002292 206.0
YYD1_k127_5859641_1 SPTR A7NFQ2 Transposase and inactivated derivatives-like protein - - - 0.0000005968 56.0
YYD1_k127_5861094_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007749 469.0
YYD1_k127_5861094_1 integral membrane protein - - - 0.00004456 48.0
YYD1_k127_5869741_0 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 0.0000000000000000000000000000000000000000000000000001508 193.0
YYD1_k127_5869741_1 Protein of unknown function with PCYCGC motif - - - 0.0000000000000000000000001246 111.0
YYD1_k127_5869741_2 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor K02275 - 1.9.3.1 0.000000000000000003476 94.0
YYD1_k127_5873925_0 integral membrane protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001328 314.0
YYD1_k127_5873925_1 nucleotidyltransferase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000004362 265.0
YYD1_k127_5873925_2 COG0438 Glycosyltransferase - - - 0.000000001267 70.0
YYD1_k127_5878358_0 4-Hydroxyphenylpyruvate dioxygenase K00457,K16421 GO:0003674,GO:0003824,GO:0003868,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0019439,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0051213,GO:0055114,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606 1.13.11.27,1.13.11.46 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001196 597.0
YYD1_k127_5878358_1 Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family K00823 - 2.6.1.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004274 512.0
YYD1_k127_5878358_10 pfam nudix K01515 - 3.6.1.13 0.0000000000000000000000000000001545 130.0
YYD1_k127_5878358_11 AMP binding - - - 0.0000000000000000000006492 108.0
YYD1_k127_5878358_12 Cysteine-rich secretory protein family - - - 0.00000000000000002177 95.0
YYD1_k127_5878358_13 Ig-like domain from next to BRCA1 gene - - - 0.0000000000000006869 90.0
YYD1_k127_5878358_14 thiazole biosynthesis adenylyltransferase ThiF K03148,K21029 - 2.7.7.73,2.7.7.80 0.000000000000005557 78.0
YYD1_k127_5878358_15 PspC domain K03973 - - 0.000000000002232 69.0
YYD1_k127_5878358_16 Belongs to the peptidase S8 family - GO:0005575,GO:0005623,GO:0031975,GO:0044464 - 0.0000001321 65.0
YYD1_k127_5878358_2 Aldo/keto reductase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007037 387.0
YYD1_k127_5878358_3 drug transmembrane transporter activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003413 378.0
YYD1_k127_5878358_4 PFAM histone deacetylase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006045 366.0
YYD1_k127_5878358_5 spore germination - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002252 251.0
YYD1_k127_5878358_6 Metallo-peptidase family M12B Reprolysin-like - - - 0.000000000000000000000000000000000000000000000000000000000000000002881 252.0
YYD1_k127_5878358_7 PFAM transglutaminase domain protein - - - 0.000000000000000000000000000000000000000000000000000000007601 225.0
YYD1_k127_5878358_8 Protein of unknown function DUF58 - - - 0.00000000000000000000000000000000000000000000000001878 196.0
YYD1_k127_5878358_9 helix_turn_helix, mercury resistance - - - 0.00000000000000000000000000000000000000000000008721 173.0
YYD1_k127_5880241_0 - - - - 1.632e-289 906.0
YYD1_k127_5880241_1 PFAM ATPase associated with various cellular activities, AAA_5 - - - 1.667e-197 619.0
YYD1_k127_5880241_2 SMART von Willebrand factor, type A - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007181 567.0
YYD1_k127_5880241_3 SWIM zinc finger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 499.0
YYD1_k127_5880241_4 carbohydrate transport K11688,K17836 - 3.5.2.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008699 500.0
YYD1_k127_5888252_0 PFAM ABC transporter transmembrane region K06147 - - 7.601e-243 767.0
YYD1_k127_5888252_1 PFAM ABC transporter transmembrane region K06147 - - 4.37e-239 757.0
YYD1_k127_5888252_10 DNA-binding transcription factor activity - - - 0.000000009479 62.0
YYD1_k127_5888252_2 proline dipeptidase activity K01262 - 3.4.11.9 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004917 522.0
YYD1_k127_5888252_3 transferase activity, transferring acyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008978 353.0
YYD1_k127_5888252_4 Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family K00826 - 2.6.1.42 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001761 342.0
YYD1_k127_5888252_5 Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid K00077 - 1.1.1.169 0.000000000000000000000000000000000000000000000000000000000000000000000000000000005652 279.0
YYD1_k127_5888252_6 TIGRFAM phosphodiesterase, MJ0936 family K07095 - - 0.00000000000000000000000000000000001577 142.0
YYD1_k127_5888252_7 Sterol carrier protein - - - 0.0000000000000000000000000000005019 126.0
YYD1_k127_5888252_8 PFAM Shikimate quinate 5-dehydrogenase - - - 0.0000000000000000000003958 96.0
YYD1_k127_5888252_9 ErfK YbiS YcfS YnhG family protein - - - 0.00000000001208 74.0
YYD1_k127_589726_0 TIGRFAM MazG family protein K02499 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003422 428.0
YYD1_k127_589726_1 carboxylic acid catabolic process K02549 GO:0006732,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009233,GO:0009234,GO:0009987,GO:0042180,GO:0042181,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663 4.2.1.113 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007819 416.0
YYD1_k127_589726_2 Enoyl-(Acyl carrier protein) reductase K10780 - 1.3.1.104 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001739 301.0
YYD1_k127_589726_3 Glycosyltransferase like family 2 K00721 - 2.4.1.83 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000003125 280.0
YYD1_k127_589726_4 NmrA-like family K00329,K00356 - 1.6.5.3,1.6.99.3 0.000000000000000000000000000000000000000000000000000000000000000000002676 245.0
YYD1_k127_589726_5 Putative cyclase K07130 - 3.5.1.9 0.0000000000000000000000000000000000000000000000000000000000001435 219.0
YYD1_k127_589726_6 carboxylic acid catabolic process - - - 0.00000000000000000000000000000000000000000000000000000000000698 218.0
YYD1_k127_589726_7 Domain of unknown function (DUF309) K09763 - - 0.0000000000000000000000000005284 119.0
YYD1_k127_589726_8 3-oxo-5-alpha-steroid 4-dehydrogenase - - - 0.000000000000000000000000003726 113.0
YYD1_k127_5897899_0 PFAM cell divisionFtsK SpoIIIE K03466 - - 4.047e-196 630.0
YYD1_k127_5907069_0 PFAM Integrase catalytic region - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000121 272.0
YYD1_k127_5907069_1 transposase activity K07483 - - 0.00002552 51.0
YYD1_k127_5908200_0 Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans K00975 - 2.7.7.27 9.074e-209 655.0
YYD1_k127_5908200_1 Belongs to the glyceraldehyde-3-phosphate dehydrogenase family K00134 - 1.2.1.12 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009508 552.0
YYD1_k127_5908200_2 Dienelactone hydrolase family K01061 - 3.1.1.45 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001799 342.0
YYD1_k127_5908200_3 Putative RNA methylase family UPF0020 K07444 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001169 335.0
YYD1_k127_5908200_4 Belongs to the GPI family K01810 GO:0003674,GO:0003824,GO:0004347,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0033554,GO:0034404,GO:0034599,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042802,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0051716,GO:0055086,GO:0070887,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576 5.3.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000005506 254.0
YYD1_k127_5908200_5 purine nucleotide biosynthetic process K02529 GO:0000976,GO:0000984,GO:0000986,GO:0000987,GO:0001017,GO:0001067,GO:0001130,GO:0001131,GO:0001141,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0006355,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0042802,GO:0043565,GO:0044212,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141 - 0.00000000000000000000001579 103.0
YYD1_k127_5908200_6 - - - - 0.000000000000000000008116 97.0
YYD1_k127_5908200_7 Golgi phosphoprotein 3 (GPP34) - - - 0.000000001279 67.0
YYD1_k127_5921052_0 the aldose L-fucose into the corresponding ketose L-fuculose K01818 - 5.3.1.25,5.3.1.3 4.827e-299 926.0
YYD1_k127_5921052_1 import. Responsible for energy coupling to the transport system K10441 - 3.6.3.17 1.421e-219 691.0
YYD1_k127_5921052_10 hydrolase - - - 0.000000000000000000003207 100.0
YYD1_k127_5921052_11 Class II aldolase adducin family protein K01628 - 4.1.2.17 0.000001373 50.0
YYD1_k127_5921052_2 xylulokinase activity K00848 GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005975,GO:0005996,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0008993,GO:0009056,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019200,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0046365,GO:0046835,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575 2.7.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008174 523.0
YYD1_k127_5921052_3 Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane K03980 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005347 494.0
YYD1_k127_5921052_4 Periplasmic binding protein domain K10439 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003361 449.0
YYD1_k127_5921052_5 Belongs to the binding-protein-dependent transport system permease family K10440 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003774 425.0
YYD1_k127_5921052_6 Class II Aldolase and Adducin N-terminal domain K01629 - 4.1.2.19 0.000000000000000000000000000000000000000000000000000000000000000000004155 241.0
YYD1_k127_5921052_7 Belongs to the RbsD FucU family K02431 - 5.1.3.29 0.000000000000000000000000000000000000000000000000000000003421 203.0
YYD1_k127_5921052_8 Transposase IS66 family - - - 0.000000000000000000000000000000000000000000000000000007316 197.0
YYD1_k127_5921052_9 methyltransferase - - - 0.0000000000000000000000000009492 122.0
YYD1_k127_5922688_0 helix_turn _helix lactose operon repressor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007329 377.0
YYD1_k127_5922688_1 PFAM binding-protein-dependent transport systems inner membrane component K02025,K05814,K10118,K10237,K10241,K15771,K17235,K17316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004978 312.0
YYD1_k127_5922688_2 PFAM binding-protein-dependent transport systems inner membrane component K02026 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000001734 284.0
YYD1_k127_5922688_3 Bacterial extracellular solute-binding protein K02027,K10120 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000001901 282.0
YYD1_k127_5922688_4 Aminoacyl-tRNA editing domain K19055 - - 0.0000000000000000000000000000000000000000004244 163.0
YYD1_k127_5922688_5 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.000000000000000000000000005365 122.0
YYD1_k127_5922688_6 [2Fe-2S] binding domain K03518 - 1.2.5.3 0.0000000000000000000006752 95.0
YYD1_k127_5922688_7 2Fe-2S -binding domain protein K03518 - 1.2.5.3 0.000000000000000000008426 103.0
YYD1_k127_5928468_0 cytochrome p450 - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007123 396.0
YYD1_k127_5928468_1 Histidine kinase - - - 0.000000000000000000000000000000000000000000000000007463 196.0
YYD1_k127_5928468_2 Histidine kinase - - - 0.0000000000000000000000000000000000000000000003492 182.0
YYD1_k127_5928468_3 Histidine kinase - - - 0.00000000000000000000000000000000000000000008211 176.0
YYD1_k127_5928468_4 Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system K01736 - 4.2.3.5 0.000000000001275 68.0
YYD1_k127_596759_0 Gamma-glutamyltranspeptidase K00681 - 2.3.2.2,3.4.19.13 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001512 580.0
YYD1_k127_596759_1 Synthesizes selenophosphate from selenide and ATP K01008 - 2.7.9.3 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000116 337.0
YYD1_k127_596759_2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000001299 248.0
YYD1_k127_596759_3 AAA domain K01939 - 6.3.4.4 0.0000000000000000000000000000000000000000000000000000000001998 209.0
YYD1_k127_596759_4 COGs COG1670 Acetyltransferase including N-acetylase of ribosomal protein - - - 0.00000000000000000000000000000000000000000000003704 176.0
YYD1_k127_596759_5 methyltransferase activity - - - 0.0000000000000000000000000004696 117.0
YYD1_k127_5996887_0 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 341.0
YYD1_k127_5996887_1 Stage II sporulation protein M - - - 0.000000000000000000000000000000000000000000000000000000000000000000375 236.0
YYD1_k127_5996887_2 Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins K13292 - - 0.0000004239 52.0
YYD1_k127_5996887_3 inositol 2-dehydrogenase activity K09949 - - 0.0002458 47.0
YYD1_k127_599989_0 Aldo Keto reductase - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007363 328.0
YYD1_k127_599989_1 Methionine synthase B12-binding module cap domain protein K00548,K15023 - 2.1.1.13,2.1.1.258 0.000000000000000000000000000000000000000000002499 165.0
YYD1_k127_599989_2 Flavin containing amine oxidoreductase - - - 0.000004607 55.0
YYD1_k127_6002010_0 - K07138 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003551 600.0
YYD1_k127_6002010_1 EamA-like transporter family - - - 0.00000000000000000000000000000000000000000000000000000002819 205.0
YYD1_k127_6002010_2 HD domain - - - 0.0000000000000000000000000000000000000000006178 163.0
YYD1_k127_6002010_3 - - - - 0.00001506 49.0
YYD1_k127_6015412_0 Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released K03086 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000283 480.0
YYD1_k127_6015412_1 histidine kinase, dimerisation and phosphoacceptor region - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001206 405.0
YYD1_k127_6015412_2 Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions K02428 - 3.6.1.66 0.0000000000000000000000000000000000000000000000000000000000000000000000000001653 261.0
YYD1_k127_6015412_3 Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation K01874 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576 6.1.1.10 0.0000000000000000000000000000000000000000000000000002534 186.0
YYD1_k127_6015412_4 metal-binding, possibly nucleic acid-binding protein K07040 GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464 - 0.0000000000000000000000000000000000000000000000003047 182.0
YYD1_k127_6015412_5 PFAM alpha beta hydrolase fold - - - 0.00000000000000000000000000000000000000002429 160.0
YYD1_k127_6016252_0 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184 304.0
YYD1_k127_6016252_1 N-terminal domain of oxidoreductase - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003294 308.0
YYD1_k127_6016252_2 - - - - 0.00000000001986 71.0
YYD1_k127_6016252_3 TIGRFAM TRAP dicarboxylate transporter, DctP subunit K21395 - - 0.00000136 50.0
YYD1_k127_6016252_4 Yip1 domain - - - 0.000001386 58.0
YYD1_k127_6025625_0 Involved in the biosynthesis of porphyrin-containing compound - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002488 383.0
YYD1_k127_6025625_1 serine-type endopeptidase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002373 316.0
YYD1_k127_6025625_2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - - - 0.00000000000001168 76.0
YYD1_k127_6026048_0 PFAM homogentisate 12-dioxygenase K00451 - 1.13.11.5 5.533e-206 649.0
YYD1_k127_6026048_1 PFAM Citrate transporter - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001789 411.0
YYD1_k127_6026048_2 Fumarylacetoacetate (FAA) hydrolase family K16171 - 3.7.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000006033 279.0
YYD1_k127_6026048_3 Flavin reductase like domain - - - 0.000000000000000000000000000000000000000000000000000000000000001064 225.0
YYD1_k127_6026048_4 sh3 domain protein K01448 - 3.5.1.28 0.000000000000000000000000000000000000000000000005321 179.0
YYD1_k127_6026048_5 protein maturation K13628 - - 0.00000000000000000000000000000000000000056 151.0
YYD1_k127_6026048_6 histone H2A K63-linked ubiquitination - - - 0.0001505 51.0
YYD1_k127_6040593_0 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000009062 256.0
YYD1_k127_6040593_1 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.00000000000000000000001696 104.0
YYD1_k127_6042845_0 Aminotransferase class-III - - - 6.738e-206 651.0
YYD1_k127_6042845_1 hydrolase family 20, catalytic K12373 - 3.2.1.52 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000192 336.0
YYD1_k127_6045481_0 DNA-binding transcription factor activity K03892 - - 0.0000000000000000000000001487 109.0
YYD1_k127_6047146_0 CO dehydrogenase/acetyl-CoA synthase delta subunit K00194 - 2.1.1.245 0.0000000000000000000000000000000000000000000000000000000000000000000000000001037 272.0
YYD1_k127_6047146_1 Methylene-tetrahydrofolate reductase C terminal - - - 0.0001025 54.0
YYD1_k127_606265_0 nuclear chromosome segregation - - - 7.079e-272 862.0
YYD1_k127_606265_1 Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily K01756,K01857 - 4.3.2.2,5.5.1.2 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001194 550.0
YYD1_k127_606265_2 signal transduction protein containing a membrane domain an EAL and a GGDEF domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002894 470.0
YYD1_k127_606265_3 Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP K01939 - 6.3.4.4 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001309 424.0
YYD1_k127_606265_4 PLD-like domain K17717 - 3.1.4.4 0.000000000000000000000000000000000000000000000000000000000000000000000001971 255.0
YYD1_k127_606265_5 Transcriptional regulator K03724 - - 0.0000000000000000000000000000000000000000000000001066 181.0
YYD1_k127_607096_0 Psort location Cytoplasmic, score - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009987 315.0
YYD1_k127_607096_1 Peptidase family M28 - - - 0.000000000000000000000000000000000000000000000004769 186.0
YYD1_k127_6081949_0 Endonuclease/Exonuclease/phosphatase family - - - 0.000000000000000005638 98.0
YYD1_k127_6081949_1 methyltransferase - - - 0.0000209 51.0
YYD1_k127_6086114_0 Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate K01712 - 4.2.1.49 6.896e-308 948.0
YYD1_k127_6086114_1 PFAM phenylalanine histidine ammonia-lyase K01745 - 4.3.1.3 0.000000000000000000000000000000000000000000000000000000000000000000001118 239.0
YYD1_k127_6086114_2 PFAM regulatory protein TetR K16137 - - 0.00000000000000000000000000000000000000000000004902 173.0
YYD1_k127_6086114_3 Chitinase class I K03791 - - 0.0000000000000000000000002268 117.0
YYD1_k127_6086114_4 denitrification pathway - - - 0.000000004662 65.0
YYD1_k127_6086114_5 Lysin motif - - - 0.00009404 53.0
YYD1_k127_6109574_0 NADH dehydrogenase K00335,K18331 - 1.12.1.3,1.6.5.3 4.872e-248 779.0
YYD1_k127_6109574_1 Aldehyde ferredoxin oxidoreductase, N-terminal domain K03738 - 1.2.7.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000001674 302.0
YYD1_k127_6109574_10 PFAM HlyD family secretion protein K02022 - - 0.00003223 51.0
YYD1_k127_6109574_11 - - - - 0.00006789 49.0
YYD1_k127_6109574_2 4Fe-4S binding domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000002216 274.0
YYD1_k127_6109574_3 TIGRFAM reductive dehalogenase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000006689 264.0
YYD1_k127_6109574_4 PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 - 1.6.5.3 0.000000000000000000000000000000000000000000000001067 178.0
YYD1_k127_6109574_5 Molybdenum Cofactor Synthesis C K03639 GO:0003674,GO:0003824,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576 4.1.99.22 0.00000000000000000000000000000000000000008333 153.0
YYD1_k127_6109574_6 4Fe-4S ferredoxin, iron-sulfur binding - - - 0.000000000000000000000000000000000000008763 166.0
YYD1_k127_6109574_7 ThiF family - - - 0.0000000000000000000000008771 115.0
YYD1_k127_6109574_8 4Fe-4S dicluster domain - - - 0.000000000000000003437 94.0
YYD1_k127_6109574_9 Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system K03116 - - 0.00002259 49.0
YYD1_k127_6125423_0 MFS/sugar transport protein K03292 - - 2.419e-203 640.0
YYD1_k127_6125423_1 PFAM aminotransferase class V K01634 - 4.1.2.27 8.634e-198 627.0
YYD1_k127_6125423_2 Putative ATP-binding cassette K01992 - - 0.00000000000000000000000000000000000000000000002456 189.0
YYD1_k127_6125423_3 DNA-binding transcription factor activity K03892 - - 0.0000000203 56.0
YYD1_k127_6125423_4 Endonuclease/Exonuclease/phosphatase family - - - 0.00003526 56.0
YYD1_k127_6129363_0 Prolyl oligopeptidase family - - - 1.181e-209 669.0
YYD1_k127_6129363_1 PFAM Glycosyl transferase family 2 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124 330.0
YYD1_k127_6129363_2 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03470 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.000000000000000000000000000000000000000000000000000000000000000199 227.0
YYD1_k127_6129363_3 Belongs to the sigma-70 factor family. ECF subfamily K03088 - - 0.0000000000000000000000000000000000000000004392 164.0
YYD1_k127_6129363_4 Anti-sigma-K factor rskA - - - 0.000000000000000000001365 103.0
YYD1_k127_6150444_0 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision K03703 - - 3.486e-285 889.0
YYD1_k127_6150444_1 Domain present in phytochromes and cGMP-specific phosphodiesterases. - - - 0.00000000000000001311 83.0
YYD1_k127_616265_0 Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen K00525 - 1.17.4.1 0.0 1329.0
YYD1_k127_616265_1 Aminotransferase class-V - - - 1.125e-201 637.0
YYD1_k127_616265_10 Poly-gamma-glutamate hydrolase - - - 0.00000000000000000000000000000000000000000009656 166.0
YYD1_k127_616265_11 Low molecular weight K14394 GO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564 3.1.3.2,3.1.3.48 0.00000000000000000000000000025 119.0
YYD1_k127_616265_12 Pyridoxamine 5'-phosphate oxidase - - - 0.0000000000000000000000007214 108.0
YYD1_k127_616265_13 - - - - 0.0000000000000000000007816 106.0
YYD1_k127_616265_15 Periplasmic binding protein domain - - - 0.00001221 48.0
YYD1_k127_616265_2 Penicillin-binding protein, dimerisation domain K03587 - 3.4.16.4 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002551 533.0
YYD1_k127_616265_3 Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein K01929 - 6.3.2.10 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001047 482.0
YYD1_k127_616265_4 Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA K03438 GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360 2.1.1.199 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007374 423.0
YYD1_k127_616265_5 COG3001 Fructosamine-3-kinase - GO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0044237 - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002288 277.0
YYD1_k127_616265_6 Intracellular protease K05520 - 3.5.1.124 0.00000000000000000000000000000000000000000000000000000000000000000003771 235.0
YYD1_k127_616265_7 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes K07738 - - 0.000000000000000000000000000000000000000000000000000000000000000002558 228.0
YYD1_k127_616265_8 serine-type endopeptidase activity - - - 0.00000000000000000000000000000000000000000000000001826 194.0
YYD1_k127_616265_9 Belongs to the MraZ family K03925 - - 0.0000000000000000000000000000000000000000000006662 170.0
YYD1_k127_6167980_0 histidine kinase HAMP region domain protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001832 392.0
YYD1_k127_6167980_1 Two component transcriptional regulator, winged helix family K07669 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004148 346.0
YYD1_k127_6167980_2 Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release K02863 GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.000000000000000000000000000000000000000000000000000000000000000000000000008592 253.0
YYD1_k127_6167980_3 Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors K02864 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 - 0.0000000000000000000000000000000000000000000000000001062 191.0
YYD1_k127_6167980_4 Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation K02935 - - 0.00000000000000000000000000000000000000000000647 166.0
YYD1_k127_6167980_5 - - - - 0.0000000000000000000000000000000000009655 146.0
YYD1_k127_6167980_6 - - - - 0.000000000007981 68.0
YYD1_k127_6207112_0 V-type ATPase 116kDa subunit family K02123 - - 0.000000000000347 79.0
YYD1_k127_6208305_0 PFAM alpha-2-macroglobulin domain protein K06894 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001398 498.0
YYD1_k127_6210379_0 Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan K01928 - 6.3.2.13 5.042e-200 635.0
YYD1_k127_6210379_1 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02109 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000006971 261.0
YYD1_k127_6210379_2 F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation K02110 GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600 - 0.000000000000000009096 85.0
YYD1_k127_6219883_0 oligosaccharyl transferase activity - - - 0.000000000000000000000000000000000000000000000000001159 204.0
YYD1_k127_6219883_1 adenylyl cyclase class-3 4 guanylyl cyclase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000007322 181.0
YYD1_k127_6219883_2 Psort location CytoplasmicMembrane, score - - - 0.00001163 54.0
YYD1_k127_6231855_0 metal-dependent hydrolase with the TIM-barrel fold - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005803 546.0
YYD1_k127_6231855_1 Major Facilitator Superfamily - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004423 414.0
YYD1_k127_6231855_10 copG family - - - 0.000000000000000000000000000000000000001053 151.0
YYD1_k127_6231855_11 pyruvate phosphate dikinase, PEP K01007 - 2.7.9.2 0.00000000000000000000000000003172 125.0
YYD1_k127_6231855_12 ATP-dependent transcriptional regulator K03556 - - 0.0000000000000000000000005837 112.0
YYD1_k127_6231855_13 Domain of unknown function (DUF333) K14475 - - 0.00000000000000009354 93.0
YYD1_k127_6231855_2 PFAM Acetyltransferase (GNAT) family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002695 369.0
YYD1_k127_6231855_3 Branched-chain amino acid transport system / permease component K01997 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000276 349.0
YYD1_k127_6231855_4 COG0410 ABC-type branched-chain amino acid transport systems, ATPase component K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004851 326.0
YYD1_k127_6231855_5 COG0411 ABC-type branched-chain amino acid transport systems, ATPase component K01995 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003197 321.0
YYD1_k127_6231855_6 PFAM Extracellular ligand-binding receptor K01999 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001692 320.0
YYD1_k127_6231855_7 COG4177 ABC-type branched-chain amino acid transport system, permease component K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000001062 258.0
YYD1_k127_6231855_8 TIGRFAM beta-ketoadipate pathway transcriptional regulators, PcaR PcaU PobR family K02624 - - 0.00000000000000000000000000000000000000000000000000006086 196.0
YYD1_k127_6242148_0 Major Facilitator Superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006307 464.0
YYD1_k127_6242148_1 PFAM sugar isomerase (SIS) K00820 - 2.6.1.16 0.000000000000000000000000000000000001257 141.0
YYD1_k127_6242148_2 - - - - 0.000000000000000000000000318 109.0
YYD1_k127_6242148_4 Putative adhesin - - - 0.000000000007512 76.0
YYD1_k127_6242455_0 PBP superfamily domain K05772 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005282 338.0
YYD1_k127_6242455_1 ATPase-coupled phosphate ion transmembrane transporter activity K02036,K06857 - 3.6.3.27,3.6.3.55 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000008146 284.0
YYD1_k127_6242455_2 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.00000000000000000000000000000000000000000000000000000000000000000000000000001174 275.0
YYD1_k127_6242455_3 PFAM binding-protein-dependent transport systems inner membrane component K05773 - - 0.00000000000000000000000000000005035 127.0
YYD1_k127_6242455_4 - - - - 0.00000000003129 70.0
YYD1_k127_6264937_0 Belongs to the class-II aminoacyl-tRNA synthetase family K04567 - 6.1.1.6 3.112e-232 728.0
YYD1_k127_6264937_1 peptidase M42 family protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003818 501.0
YYD1_k127_6264937_10 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides K03624 - - 0.000000000000000000000000000000000000000000000000000000009212 202.0
YYD1_k127_6264937_11 PFAM LmbE family protein - - - 0.0000000000000000000000000000000000000000000000000002884 194.0
YYD1_k127_6264937_2 ATPase activity K02045 - 3.6.3.25 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008697 486.0
YYD1_k127_6264937_3 peptidase M42 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001246 465.0
YYD1_k127_6264937_4 Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005462 447.0
YYD1_k127_6264937_5 peptidase M42 family protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003161 419.0
YYD1_k127_6264937_6 Alpha/beta hydrolase family - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001044 310.0
YYD1_k127_6264937_7 maltose binding K02027,K15770 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000002655 308.0
YYD1_k127_6264937_8 COGs COG1653 ABC-type sugar transport system periplasmic component K02027 - - 0.00000000000000000000000000000000000000000000000000000000000003982 233.0
YYD1_k127_6264937_9 Endonuclease that specifically degrades the RNA of RNA- DNA hybrids K03469 GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576 3.1.26.4 0.0000000000000000000000000000000000000000000000000000000008844 204.0
YYD1_k127_6271801_0 Belongs to the adenylyl cyclase class-4 guanylyl cyclase family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007068 400.0
YYD1_k127_6271801_1 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000895 376.0
YYD1_k127_6271801_2 PFAM regulatory protein TetR - - - 0.000000341 55.0
YYD1_k127_6300541_0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K00446 - 1.13.11.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001297 502.0
YYD1_k127_6300541_1 Aldolase/RraA K10218 - 4.1.3.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000004295 280.0
YYD1_k127_6300541_2 TIGRFAM isocitrate dehydrogenase, NADP-dependent K00031 - 1.1.1.42 0.0000000000000000000007635 94.0
YYD1_k127_6300541_3 5-carboxymethyl-2-hydroxymuconate isomerase K01826 - 5.3.3.10 0.00000000000000001176 87.0
YYD1_k127_6305616_0 PFAM FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00528 - 1.18.1.2,1.19.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008776 492.0
YYD1_k127_6305616_1 PFAM Polysulphide reductase, NrfD K00185 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000934 488.0
YYD1_k127_6305616_10 Protein of unknown function (DUF3341) - - - 0.000000000000000000000005296 108.0
YYD1_k127_6305616_11 - - - - 0.0001344 46.0
YYD1_k127_6305616_2 HhH-GPD family K03575 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001562 417.0
YYD1_k127_6305616_3 Beta-lactamase superfamily domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003094 323.0
YYD1_k127_6305616_4 Membrane dipeptidase (Peptidase family M19) K01273 - 3.4.13.19 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002836 309.0
YYD1_k127_6305616_5 - - - - 0.0000000000000000000000000000000000000000000162 174.0
YYD1_k127_6305616_6 - - - - 0.000000000000000000000000000000000000358 145.0
YYD1_k127_6305616_7 Cytochrome C oxidase, cbb3-type, subunit III - - - 0.00000000000000000000000000000000000317 143.0
YYD1_k127_6305616_8 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family - - - 0.00000000000000000000000000000000006146 139.0
YYD1_k127_6305616_9 Cytochrome c - - - 0.00000000000000000000000007758 119.0
YYD1_k127_6306970_0 Stage II sporulation protein M - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009228 421.0
YYD1_k127_6306970_1 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002862 355.0
YYD1_k127_6306970_2 HNH endonuclease - - - 0.00000000000000000000000000000000000000000000000000000000000001286 218.0
YYD1_k127_6311593_0 PFAM Glycosyl transferase, group 1 - - - 1.141e-302 946.0
YYD1_k127_6311593_1 TIGRFAM acetyl coenzyme A synthetase (ADP forming), alpha domain K01905,K22224 - 6.2.1.13 5.471e-220 698.0
YYD1_k127_6311593_10 oxidoreductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008218 402.0
YYD1_k127_6311593_11 Metallo-beta-lactamase superfamily - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004086 357.0
YYD1_k127_6311593_12 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002803 361.0
YYD1_k127_6311593_13 Binding-protein-dependent transport system inner membrane component K05814 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001087 342.0
YYD1_k127_6311593_14 Belongs to the short-chain dehydrogenases reductases (SDR) family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001199 318.0
YYD1_k127_6311593_15 Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides K02003 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000003505 295.0
YYD1_k127_6311593_16 PFAM DRTGG domain protein K06873 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004218 291.0
YYD1_k127_6311593_17 Binding-protein-dependent transport system inner membrane component K05815 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000004562 289.0
YYD1_k127_6311593_18 PFAM secretion protein HlyD family protein K02005 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000001226 281.0
YYD1_k127_6311593_19 PFAM GlcNAc-PI de-N-acetylase - - - 0.00000000000000000000000000000000000000000000000000000000000000000001752 243.0
YYD1_k127_6311593_2 ADP binding - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001277 578.0
YYD1_k127_6311593_20 helix_turn_helix, Lux Regulon - - - 0.000000000000000000000000000000000000000000000000000000000000000003442 231.0
YYD1_k127_6311593_21 hydrolase activity, acting on ester bonds - - - 0.000000000000000000000000000000000000000000000000000000001116 213.0
YYD1_k127_6311593_22 Protein of unknown function (DUF1706) - - - 0.0000000000000000000000000000000000000000000000000000000272 199.0
YYD1_k127_6311593_23 cyclic nucleotide binding K07058,K14266 - 1.14.19.9 0.00000000000000000000000000000000009123 136.0
YYD1_k127_6311593_24 membrane - - - 0.000000000000000000000000000000001147 136.0
YYD1_k127_6311593_25 chromosome segregation - - - 0.0000000000000000000000000001365 122.0
YYD1_k127_6311593_26 CAAX protease self-immunity - - - 0.0000000000000000000000001713 116.0
YYD1_k127_6311593_27 domain, Protein - - - 0.00000000000001291 80.0
YYD1_k127_6311593_28 - - - - 0.00004144 52.0
YYD1_k127_6311593_29 Patatin-like phospholipase - - - 0.00006883 56.0
YYD1_k127_6311593_3 Pfam Glycosyl transferases group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001647 533.0
YYD1_k127_6311593_4 transferase activity, transferring glycosyl groups - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008508 482.0
YYD1_k127_6311593_5 Glycogen debranching enzyme - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001408 476.0
YYD1_k127_6311593_6 COGs COG1653 ABC-type sugar transport system periplasmic component K05813 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003519 476.0
YYD1_k127_6311593_7 NB-ARC domain - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003119 480.0
YYD1_k127_6311593_8 Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA) K07568 - 2.4.99.17 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001079 438.0
YYD1_k127_6311593_9 histidine kinase, dimerisation and phosphoacceptor region K02480 - 2.7.13.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000767 414.0
YYD1_k127_6328714_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 1.435e-298 927.0
YYD1_k127_6328714_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001219 475.0
YYD1_k127_6328714_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003815 389.0
YYD1_k127_6328714_3 Periplasmic binding protein domain K01999 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003446 364.0
YYD1_k127_6328714_4 PFAM ABC transporter related K01995 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 359.0
YYD1_k127_6328714_5 Bacterial transcriptional activator domain - - - 0.0000000003936 72.0
YYD1_k127_6361892_0 O-methyltransferase activity - GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944 - 0.0000000000000000000000000000000000000000000000000000000000000000001024 239.0
YYD1_k127_6375499_0 ABC transporter transmembrane region K06147 - - 1.776e-254 798.0
YYD1_k127_6375499_1 ABC transporter transmembrane region K06147 - - 9.398e-244 767.0
YYD1_k127_6375499_10 Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control K00970 - 2.7.7.19 0.00000000000000000000006548 115.0
YYD1_k127_6375499_11 Alpha/beta hydrolase family - - - 0.000000000000000000001089 101.0
YYD1_k127_6375499_12 - - - - 0.00000002863 58.0
YYD1_k127_6375499_2 thiamine transport K02011 - - 1.162e-197 639.0
YYD1_k127_6375499_3 Part of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system K02010,K02052 - 3.6.3.30 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003717 405.0
YYD1_k127_6375499_4 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00015 - 1.1.1.26 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001368 401.0
YYD1_k127_6375499_5 N-acetylglucosaminylinositol deacetylase activity K22135 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001201 317.0
YYD1_k127_6375499_6 Hep Hag repeat protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000002955 308.0
YYD1_k127_6375499_7 Belongs to the glucose-6-phosphate 1-epimerase family K01792 - 5.1.3.15 0.000000000000000000000000000000000000000000000000000000000000000000000001055 254.0
YYD1_k127_6375499_8 PhoQ Sensor - - - 0.00000000000000000000000000000000000000000000000000000000000000000003757 255.0
YYD1_k127_6375499_9 -acetyltransferase - - - 0.0000000000000000000000000000000000000000000000000000004927 201.0
YYD1_k127_6385395_0 Haloacid dehalogenase domain protein hydrolase - - - 0.00000000000000000000000000000000000000000000000000005012 191.0
YYD1_k127_6385395_1 Domain of unknown function (DUF389) - - - 0.000000000000000000000000000000000000000000000000001517 194.0
YYD1_k127_6385395_2 PFAM basic membrane lipoprotein K07335 - - 0.0000000000000000000000000000000000000000000000002478 183.0
YYD1_k127_6385395_3 PFAM basic membrane lipoprotein K07335 - - 0.0000001203 63.0
YYD1_k127_6389704_0 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001266 529.0
YYD1_k127_6389704_1 PFAM Extracellular ligand-binding receptor K01999 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008788 485.0
YYD1_k127_6389704_2 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000357 475.0
YYD1_k127_6389704_3 PFAM ABC transporter related K01995,K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008527 402.0
YYD1_k127_6389704_4 PFAM ABC transporter related K01996 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009906 350.0
YYD1_k127_6389704_5 PFAM molybdopterin binding domain - - - 0.0000000000000000000000000000000000000000000000000000009415 194.0
YYD1_k127_6389704_6 - - - - 0.0000000000000000000000000000000000000000000000011 191.0
YYD1_k127_6389704_7 Fungalysin metallopeptidase (M36) - - - 0.0000000000000006303 91.0
YYD1_k127_6389704_9 signal-transduction protein containing cAMP-binding and CBS domains K03281,K08714,K16922 - - 0.00000000000008934 78.0
YYD1_k127_6393516_0 PFAM band 7 protein - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004397 438.0
YYD1_k127_6393516_1 Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source K01950 - 6.3.5.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001143 425.0
YYD1_k127_6393516_2 PFAM Rhomboid family K19225 - 3.4.21.105 0.00000000000000000000000000000000000000000000001259 181.0
YYD1_k127_6393516_3 lipoprotein biosynthetic process K13292 - - 0.000000000000000000000000000000001513 139.0
YYD1_k127_6393516_4 Membrane-bound serine protease (ClpP class) K07403 - - 0.0000000001094 70.0
YYD1_k127_6400655_0 Belongs to the binding-protein-dependent transport system permease family K01997 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008275 344.0
YYD1_k127_6400655_1 Belongs to the binding-protein-dependent transport system permease family K01998 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000004534 273.0
YYD1_k127_640619_0 Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin K00169,K03737 - 1.2.7.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103 586.0
YYD1_k127_6408919_0 PFAM AMP-dependent synthetase and ligase K01897 - 6.2.1.3 3.987e-220 697.0
YYD1_k127_6408919_1 Protein of unknown function DUF89 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001198 340.0
YYD1_k127_6408919_2 queuosine metabolic process K04068 - 1.97.1.4 0.00000000000000000000000000000000000000000000000002533 186.0
YYD1_k127_6408919_3 Belongs to the heat shock protein 70 family - - - 0.0000000000000000000000000000000000000000000000006546 178.0
YYD1_k127_6408919_4 Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia K01657 - 4.1.3.27 0.0000000000000000000000000000000000000001883 159.0
YYD1_k127_6408919_5 Protein of unknown function (DUF1257) - - - 0.0000000000000000000000000000000007615 134.0
YYD1_k127_6408919_6 Protein of unknown function DUF86 - - - 0.000000000000000000000000005889 111.0
YYD1_k127_6408919_7 DNA polymerase beta domain protein region K07075 - - 0.0000000000000000000000344 102.0
YYD1_k127_6408919_8 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily - - - 0.0000000000000000000005793 100.0
YYD1_k127_6408919_9 Protein of unknown function (DUF2997) - - - 0.00000000000000001518 83.0
YYD1_k127_6441799_0 Belongs to the ABC transporter superfamily K05816 - 3.6.3.20 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000209 430.0
YYD1_k127_6441799_1 Binding-protein-dependent transport system inner membrane component K02026,K05815,K17243 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004236 379.0
YYD1_k127_6441799_2 PFAM binding-protein-dependent transport systems inner membrane component K02025 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001462 356.0
YYD1_k127_6441799_3 Calcineurin-like phosphoesterase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000002769 286.0
YYD1_k127_6441799_4 carbohydrate transport - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000002091 283.0
YYD1_k127_6441799_5 domain, Protein K05989 - 3.2.1.40 0.0000000000005243 83.0
YYD1_k127_6441799_6 - - - - 0.0000000003618 68.0
YYD1_k127_6442132_0 Fumarate hydratase (Fumerase) K01676,K01677 - 4.2.1.2 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009092 448.0
YYD1_k127_6442132_1 maltose binding K02027 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005327 402.0
YYD1_k127_6442132_10 PFAM oxidoreductase domain protein - - - 0.00000000000000000000000000000000000003208 148.0
YYD1_k127_6442132_11 Ribbon-helix-helix domain - - - 0.00000000000000000000000000000000000007938 150.0
YYD1_k127_6442132_2 binding-protein-dependent transport systems inner membrane component K02026 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003608 329.0
YYD1_k127_6442132_3 Fumarase C-terminus K01676,K01678 - 4.2.1.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004318 324.0
YYD1_k127_6442132_4 transmembrane transport K02025,K05814,K10118,K10237,K10241,K15771,K17235,K17316 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000008352 269.0
YYD1_k127_6442132_5 transmembrane transporter activity K05820 - - 0.000000000000000000000000000000000000000000000000000000001034 215.0
YYD1_k127_6442132_6 ROK family K00845 - 2.7.1.2 0.000000000000000000000000000000000000000000000000000000001159 213.0
YYD1_k127_6442132_7 - - - - 0.0000000000000000000000000000000000000000000000000000004012 203.0
YYD1_k127_6442132_8 UTRA K03710 - - 0.0000000000000000000000000000000000000000000000002966 185.0
YYD1_k127_6442132_9 PD-(D/E)XK nuclease superfamily - - - 0.0000000000000000000000000000000000000000000001224 171.0
YYD1_k127_6457032_0 - Catabolite gene activator and regulatory subunit of cAMP-dependent protein - - - 4.75e-227 716.0
YYD1_k127_6457032_1 Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone K00036 - 1.1.1.363,1.1.1.49 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007843 523.0
YYD1_k127_6457032_10 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 - 3.1.1.31 0.00000000000000000000000000000000000000000000000000000000000002441 223.0
YYD1_k127_6457032_11 Catalyzes a trans-dehydration via an enolate intermediate K03786 - 4.2.1.10 0.0000000000000000000000000000000000000000000000000000000000000601 216.0
YYD1_k127_6457032_12 - - - - 0.00000000000000000000000000000000000000000006127 164.0
YYD1_k127_6457032_13 Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS - - - 0.00000000000000000000000000174 113.0
YYD1_k127_6457032_14 glyoxalase bleomycin resistance protein dioxygenase - - - 0.000000000864 64.0
YYD1_k127_6457032_2 PFAM ABC transporter related K09972 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001606 419.0
YYD1_k127_6457032_3 extracellular solute-binding protein, family 3 K09969 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006933 394.0
YYD1_k127_6457032_4 Binding-protein-dependent transport system inner membrane component K09971 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004134 361.0
YYD1_k127_6457032_5 Binding-protein-dependent transport system inner membrane component K09970 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004785 347.0
YYD1_k127_6457032_6 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004738 321.0
YYD1_k127_6457032_7 amino acid activation for nonribosomal peptide biosynthetic process K14379 - 3.1.3.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000002399 315.0
YYD1_k127_6457032_8 Parallel beta-helix repeats - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000283 281.0
YYD1_k127_6457032_9 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases K12972 - 1.1.1.79,1.1.1.81 0.00000000000000000000000000000000000000000000000000000000000000000000000001667 261.0
YYD1_k127_6470736_0 PFAM ABC transporter related K01990 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000382 341.0
YYD1_k127_6470736_1 Protein of unknown function (DUF3105) - - - 0.00000000000000000000000000000000000000000000000000000005406 202.0
YYD1_k127_6470736_2 Protein of unknown function, DUF488 - - - 0.000000000000000000000000000000000007308 139.0
YYD1_k127_6470736_3 dTDP biosynthetic process K00560,K00943 - 2.1.1.45,2.7.4.9 0.000000000000000000000000000001312 128.0
YYD1_k127_6470736_4 ABC-2 family transporter protein K01992 - - 0.000000000000000000000000006268 124.0
YYD1_k127_6470736_5 COG0842 ABC-type multidrug transport system, permease component K01992 - - 0.0000000000001737 82.0
YYD1_k127_6470736_6 Helix-turn-helix domain - - - 0.0000008514 52.0
YYD1_k127_6476228_0 PFAM UvrD REP helicase K03657 - 3.6.4.12 2.848e-270 850.0
YYD1_k127_6476228_1 teichoic acid transport K01990,K09689,K09691 - 3.6.3.38 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009621 586.0
YYD1_k127_6476228_10 PFAM peptidase M22 glycoprotease K14742 - - 0.0000000000000000000000000000000000000000000000000000000000000000000001045 245.0
YYD1_k127_6476228_11 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000001105 254.0
YYD1_k127_6476228_13 Threonylcarbamoyl adenosine biosynthesis protein TsaE K06925 - - 0.0000000000000000000000000000000000000000000000000023 186.0
YYD1_k127_6476228_14 DNA-binding transcription factor activity K02274 - 1.9.3.1 0.0000000000000000000000000000000000000000000000004141 179.0
YYD1_k127_6476228_15 Ribosomal-protein-alanine acetyltransferase K03789 - 2.3.1.128 0.00000000000000000000000000000000000006006 149.0
YYD1_k127_6476228_16 PFAM glycosyl transferase group 1 - - - 0.000000000000000000000000000000008063 132.0
YYD1_k127_6476228_17 PFAM methyltransferase - - - 0.0000000000000002285 89.0
YYD1_k127_6476228_2 lipid-A-disaccharide synthase activity K00748 - 2.4.1.182 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000406 531.0
YYD1_k127_6476228_3 SAF K01654 - 2.5.1.56 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003961 520.0
YYD1_k127_6476228_4 NmrA-like family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003603 517.0
YYD1_k127_6476228_5 PFAM glycosyl transferase group 1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001857 366.0
YYD1_k127_6476228_6 PFAM NAD-dependent epimerase dehydratase K00067 - 1.1.1.133 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001625 336.0
YYD1_k127_6476228_7 ABC-2 type transporter K09690 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001158 309.0
YYD1_k127_6476228_8 polysaccharide biosynthetic process K16694 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000008583 302.0
YYD1_k127_6476228_9 TIGRFAM phage SPO1 DNA polymerase-related protein K21929 - 3.2.2.27 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001788 276.0
YYD1_k127_6481485_0 acetyltransferase - - - 0.000000000000000000000000001606 124.0
YYD1_k127_6481485_1 3-demethylubiquinone-9 3-O-methyltransferase activity K16868 - 2.1.1.265 0.000000000000000000002762 96.0
YYD1_k127_6485828_0 Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr) K01868 - 6.1.1.3 3.419e-279 872.0
YYD1_k127_6485828_1 Catalyzes the decarboxylative condensation of pimeloyl- acyl-carrier protein and L-alanine to produce 8-amino-7- oxononanoate (AON), acyl-carrier protein , and carbon dioxide K00639 - 2.3.1.29 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001397 578.0
YYD1_k127_6485828_10 Belongs to the bacterial ribosomal protein bL35 family K02916 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.000000000000000000000001062 104.0
YYD1_k127_6485828_11 domain protein - - - 0.0000000000000000000006637 104.0
YYD1_k127_6485828_2 Phosphotransferase enzyme family K18844 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001983 308.0
YYD1_k127_6485828_3 IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins K02520 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000172 251.0
YYD1_k127_6485828_4 domain, Protein K01212,K12287,K20276 - 3.2.1.65 0.0000000000000000000000000000000000000000000000000000000000000007192 251.0
YYD1_k127_6485828_5 KR domain K04708 - 1.1.1.102 0.00000000000000000000000000000000000000000000000000000000000008242 222.0
YYD1_k127_6485828_6 domain protein - - - 0.000000000000000000000000000000000000000000000000000000007155 228.0
YYD1_k127_6485828_7 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit K02887 GO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904 - 0.00000000000000000000000000000000000000001139 155.0
YYD1_k127_6485828_8 PFAM membrane protein of K08972 - - 0.0000000000000000000000000000000003848 135.0
YYD1_k127_6485828_9 Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family K03437 - - 0.0000000000000000000000001953 112.0
YYD1_k127_6488976_0 Histidine kinase - - - 0.0000000000000000000000000000000000000000000000000004834 205.0
YYD1_k127_6488976_1 Histidine kinase - - - 0.0000000000000000000000000000000000188 153.0
YYD1_k127_6488976_2 cytochrome P450 - - - 0.0000001111 55.0
YYD1_k127_6488976_3 - - - - 0.0002708 49.0
YYD1_k127_6490983_0 MacB-like periplasmic core domain K02004 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002207 422.0
YYD1_k127_6490983_1 PFAM secretion protein HlyD family protein K02005 - - 0.000000000000000000000000000000000000000132 157.0
YYD1_k127_6490983_2 - - - - 0.000000000000000000000000000000000000004266 161.0
YYD1_k127_6490983_3 Transposase DDE domain - - - 0.000000000000000000000000000000008563 139.0
YYD1_k127_6490983_4 - - - - 0.000000000000000003679 86.0
YYD1_k127_6490983_5 Cupin domain - - - 0.000001546 54.0
YYD1_k127_6494857_0 amidohydrolase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007158 561.0
YYD1_k127_6494857_1 AcrB/AcrD/AcrF family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001136 451.0
YYD1_k127_6494857_2 Glycosyl transferase family 2 - - - 0.00000000000000000000000000000000000000000000000000000000000000002968 237.0
YYD1_k127_6494857_3 Uncharacterized protein conserved in bacteria (DUF2064) K09931 - - 0.00000000000000000000000000000000000000000004493 171.0
YYD1_k127_6494857_5 Radical SAM superfamily K06871 - - 0.0000008214 53.0
YYD1_k127_6522071_0 methyltransferase activity - - - 0.00000000000000000000000000000000000000000000000000000000000000000000002534 247.0
YYD1_k127_6524173_0 ABC transporter substrate-binding protein PnrA-like K07335 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004718 368.0
YYD1_k127_6524173_1 PFAM Translin K07477 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003046 257.0
YYD1_k127_6524173_2 Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP K00858 - 2.7.1.23 0.00000000000000000000000000000000000000000000000000000000000000000000000003705 258.0
YYD1_k127_6524173_3 Domain of unknown function DUF83 K07464 - 3.1.12.1 0.0000000000000000000000000000000000000000000000266 177.0
YYD1_k127_6524173_4 Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism K03111 - - 0.00000000000000000000000000000000000000000001187 167.0
YYD1_k127_6524173_5 Protein tyrosine kinase K12132 - 2.7.11.1 0.0000000000000000000000000000000000000002208 170.0
YYD1_k127_6524173_6 Psort location Cytoplasmic, score 8.96 - - - 0.000000000000002353 81.0
YYD1_k127_6534266_0 Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process K03385 - 1.7.2.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000002412 272.0
YYD1_k127_6534266_1 PFAM ThiJ PfpI domain protein K05520 - 3.5.1.124 0.000000000000000000000000000000000000000000000002139 175.0
YYD1_k127_6534266_2 negative regulation of transcription, DNA-templated - - - 0.000000000000000000000000000000000005059 140.0
YYD1_k127_6548899_0 Cupredoxin-like domain - - - 0.00001194 56.0
YYD1_k127_6548899_1 COG1680 Beta-lactamase class C and other penicillin binding - - - 0.0005346 44.0
YYD1_k127_65767_0 Molybdopterin oxidoreductase Fe4S4 domain K00123 - 1.17.1.9 0.0 1124.0
YYD1_k127_65767_1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region K00122,K00335 - 1.17.1.9,1.6.5.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004875 491.0
YYD1_k127_65767_2 formate dehydrogenase (NAD+) activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007532 330.0
YYD1_k127_65767_3 Protein of unknown function (DUF3048) C-terminal domain - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001252 312.0
YYD1_k127_65767_4 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor K00254 GO:0000166,GO:0003674,GO:0003824,GO:0004152,GO:0004158,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0010181,GO:0016020,GO:0016491,GO:0016627,GO:0016634,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0032553,GO:0034641,GO:0034654,GO:0036094,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0048037,GO:0050662,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072527,GO:0072528,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576 1.3.5.2 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000001025 306.0
YYD1_k127_65767_5 Orotidine-5-phosphate decarboxylase orotate phosphoribosyltransferase K01591,K13421 - 2.4.2.10,4.1.1.23 0.0000000000000000000000000000236 119.0
YYD1_k127_65767_6 Predicted membrane protein (DUF2085) - - - 0.000000000006948 73.0
YYD1_k127_6581848_0 Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family K03307,K14387 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000003876 267.0
YYD1_k127_6611433_0 PFAM TPR repeat-containing protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000006784 249.0
YYD1_k127_6611433_1 DDE superfamily endonuclease - - - 0.0000000000000000000000000000000000007721 145.0
YYD1_k127_6611433_2 Transposase - - - 0.0002677 44.0
YYD1_k127_6622646_0 Domain present in PSD-95, Dlg, and ZO-1/2. K04771,K08070 - 1.3.1.74,3.4.21.107 0.000000000000000000000000000000000000000000000000000000000000000000000004536 251.0
YYD1_k127_6622646_1 LysR substrate binding domain - - - 0.00000000000000000000000000000000000000000000000000002818 199.0
YYD1_k127_6622646_2 Sulphur transport K07112 - - 0.0000000000000000000001271 99.0
YYD1_k127_6645221_0 Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate K00606 - 2.1.2.11 0.0000000000000000000000000000000000000007621 152.0
YYD1_k127_6645221_1 Ethanolamine utilization protein EutJ K01999 - - 0.00000000000000000000000009661 114.0
YYD1_k127_6646998_0 Protease prsW family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000001251 279.0
YYD1_k127_6646998_1 Uncharacterized protein conserved in bacteria (DUF2344) - - - 0.0000000000000000000000000000000000000000000004224 173.0
YYD1_k127_665060_0 Sigma-70, region 4 type 2 K11618 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000002036 262.0
YYD1_k127_665060_1 Psort location Cytoplasmic, score - - - 0.00000000000000000000000000000000002103 139.0
YYD1_k127_665060_2 histidine kinase dimerisation and phosphoacceptor region - - - 0.000000000000000000002934 98.0
YYD1_k127_665060_3 histidine kinase, dimerisation and phosphoacceptor region - - - 0.000000000000002156 87.0
YYD1_k127_6659790_0 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02470 - 5.99.1.3 0.000000000000000000000000000000000000000000000000000000000000000002304 228.0
YYD1_k127_666010_0 His Kinase A (phosphoacceptor) domain - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006144 363.0
YYD1_k127_666010_1 LysM domain - - - 0.0000000000000006015 86.0
YYD1_k127_666010_2 Septum formation initiator - - - 0.0000000002838 66.0
YYD1_k127_666010_3 Mechanosensitive ion channel - - - 0.000001301 50.0
YYD1_k127_666010_5 Polyketide cyclase / dehydrase and lipid transport - - - 0.00003864 50.0
YYD1_k127_6661992_0 Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) K01649 - 2.3.3.13 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000905 581.0
YYD1_k127_6661992_1 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate K00053 - 1.1.1.86 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006598 503.0
YYD1_k127_6661992_2 Thiamine pyrophosphate protein TPP binding domain protein K01652 - 2.2.1.6 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000001865 297.0
YYD1_k127_6661992_3 Acetolactate synthase, small subunit K01653 - 2.2.1.6 0.00000000000000000000000000000000000000000000000000000001778 203.0
YYD1_k127_6672925_0 Transposase DDE domain group 1 - - - 0.0000000000000000000000000000000000005834 158.0
YYD1_k127_6672925_1 WD domain, G-beta repeat - - - 0.000000000000000000000001751 114.0
YYD1_k127_6681371_0 Pyruvate:ferredoxin oxidoreductase core domain II K00174 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002877 551.0
YYD1_k127_6681371_1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00175 - 1.2.7.11,1.2.7.3 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001427 406.0
YYD1_k127_6681371_10 Belongs to the bacterial ribosomal protein bL27 family K02899 GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904 - 0.0000000000000000000000000000002002 124.0
YYD1_k127_6681371_11 This protein binds to 23S rRNA in the presence of protein L20 K02888 GO:0003674,GO:0003735,GO:0005198 - 0.0000000000000000000000000000004643 124.0
YYD1_k127_6681371_12 PFAM 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00176 - 1.2.7.3 0.000000000000000000000000000003079 122.0
YYD1_k127_6681371_13 Nitroreductase family - - - 0.00000000000000000000007424 100.0
YYD1_k127_6681371_15 sequence-specific DNA binding - - - 0.00000000000003361 77.0
YYD1_k127_6681371_2 PFAM Polynucleotide adenylyltransferase region K00970,K00974 - 2.7.7.19,2.7.7.72 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006906 386.0
YYD1_k127_6681371_3 PhoQ Sensor - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003781 321.0
YYD1_k127_6681371_4 Transcriptional regulatory protein, C terminal K07667 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008438 304.0
YYD1_k127_6681371_5 PFAM thymidine kinase K00857 GO:0003674,GO:0003824,GO:0004797,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009120,GO:0009123,GO:0009124,GO:0009157,GO:0009162,GO:0009165,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0019136,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046104,GO:0046125,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0090304,GO:0090407,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901657 2.7.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001648 275.0
YYD1_k127_6681371_6 Belongs to the purine pyrimidine phosphoribosyltransferase family K00760 - 2.4.2.8 0.00000000000000000000000000000000000000000000000000000000000000000000000000001528 264.0
YYD1_k127_6681371_7 Pyruvate ferredoxin/flavodoxin oxidoreductase K00172,K00177 - 1.2.7.1,1.2.7.3 0.000000000000000000000000000000000000000000000000000000000000000000004734 239.0
YYD1_k127_6681371_8 Binds the 23S rRNA K02909 - - 0.0000000000000000000000000000000000000000000000000000000000000000006141 232.0
YYD1_k127_6681371_9 GAF domain - - - 0.000000000000000000000000000000000000000000001831 179.0
YYD1_k127_6690315_0 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003427 329.0
YYD1_k127_6690315_1 Belongs to the prokaryotic molybdopterin-containing oxidoreductase family K00123 - 1.17.1.9 0.00000000000000000000000000000000000000000000000000000000004282 209.0
YYD1_k127_6692958_0 Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC - - - 5.447e-202 638.0
YYD1_k127_6692958_1 UDP-N-acetylglucosamine 2-epimerase activity - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004384 325.0
YYD1_k127_6692958_2 Glycosyl transferase, family 2 K20444 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000001182 280.0
YYD1_k127_6692958_3 c6 transcription factor - - - 0.000000002825 65.0
YYD1_k127_672212_0 PFAM PfkB domain protein K16328 - 2.7.1.83 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001537 322.0
YYD1_k127_672212_1 Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway K16329 - 4.2.1.70 0.00000000000000000000000000000000000000000000000000000000000000000000299 240.0
YYD1_k127_6729904_0 PFAM TPR repeat-containing protein - - - 1.169e-196 638.0
YYD1_k127_6729904_1 In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity K02335 GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576 2.7.7.7 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004607 387.0
YYD1_k127_6729904_2 Belongs to the glycosyl hydrolase 43 family - - - 0.00000000000000000000000000000000000000000000000000000000000000008497 229.0
YYD1_k127_6729904_3 oxidoreductase activity - - - 0.000000000295 69.0
YYD1_k127_6737143_0 metal-dependent phosphohydrolase, HD sub domain K07037 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001419 566.0
YYD1_k127_6737143_1 Yqey-like protein K09117 - - 0.000000000000000000000000000003804 121.0
YYD1_k127_6747209_0 Elongator protein 3, MiaB family, Radical SAM - - - 2.197e-275 860.0
YYD1_k127_6747209_1 Tetratricopeptide TPR_2 repeat protein - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006825 467.0
YYD1_k127_6747209_2 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate K00940 GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006163,GO:0006165,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:0072521,GO:0072527,GO:1901360,GO:1901564 2.7.4.6 0.0000000000000000000000000000000000000000000000000000000000000000000001233 242.0
YYD1_k127_6747209_3 Radical SAM - - - 0.000000000000005883 78.0
YYD1_k127_6751881_0 Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template K03628 - - 1.517e-215 674.0
YYD1_k127_6751881_1 CoA binding domain K09181 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003978 392.0
YYD1_k127_6751881_2 Peptidoglycan-binding LysM - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000003335 298.0
YYD1_k127_6751881_4 PFAM sigma-70 region 2 domain protein K03088 - - 0.00000000000000000000000000000000000000000000000000000000000000005875 229.0
YYD1_k127_6751881_5 PFAM OsmC family protein K07397 - - 0.0000000000000000000000000000000000000000000000002773 179.0
YYD1_k127_6751881_6 TIGRFAM glutaredoxin-like domain protein - - - 0.00000000000000000000000000000000000000000134 163.0
YYD1_k127_6751881_7 PFAM alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen - - - 0.0000000000000000000000000000008619 129.0
YYD1_k127_6751881_8 TIGRFAM glutaredoxin-like domain protein - - - 0.000000000000000000000000009823 110.0
YYD1_k127_6751881_9 Putative zinc-finger - - - 0.0000000000000000000003775 98.0
YYD1_k127_675803_0 Aminotransferase class-III K15372 - 2.6.1.55 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001008 507.0
YYD1_k127_675803_1 Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline K00611,K09065,K13252 - 2.1.3.3,2.1.3.6,2.1.3.9 0.0000000002805 62.0
YYD1_k127_6762668_0 phosphorelay signal transduction system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002477 410.0
YYD1_k127_6762668_1 COGs COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000003969 264.0
YYD1_k127_6762668_2 Protein conserved in bacteria K20274 - - 0.000000000000000000000000598 108.0
YYD1_k127_6762668_3 Transglycosylase associated protein - - - 0.00000000000000000000002807 103.0
YYD1_k127_6762799_2 Lytic transglycosylase catalytic - - - 0.000001104 50.0
YYD1_k127_6766582_0 Alpha amylase, catalytic domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001112 511.0
YYD1_k127_6766582_1 cytochrome c peroxidase K00428 - 1.11.1.5 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000174 370.0
YYD1_k127_6766582_2 ASPIC and UnbV - - - 0.00000000000000000000000000000000000000000000000000000001716 225.0
YYD1_k127_6769535_0 Tetratricopeptide TPR_2 repeat protein - - - 0.0000000000000000000000000000000000000000000000000000000002357 215.0
YYD1_k127_6769535_1 Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism - - - 0.0000000000000000001135 93.0
YYD1_k127_6785241_0 Belongs to the ABC transporter superfamily K10823 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002553 472.0
YYD1_k127_6785241_1 Binding-protein-dependent transport system inner membrane component K15581 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000004977 301.0
YYD1_k127_6785241_2 Permease K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000008267 272.0
YYD1_k127_6785241_3 Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity - - - 0.00000000000000000000000000000000000000000000000000000000003282 211.0
YYD1_k127_6785241_4 Alpha/beta hydrolase family - - - 0.000000000000000000000000000000000009861 146.0
YYD1_k127_6785241_5 Belongs to the ABC transporter superfamily K02031,K15583 - - 0.00000000002808 64.0
YYD1_k127_6785241_6 Domain of unknown function (DU1801) - - - 0.0000006789 51.0
YYD1_k127_6789917_0 PFAM ABC transporter related K16786,K16787 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001855 418.0
YYD1_k127_6789917_1 Putative vitamin uptake transporter K09125 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000004252 252.0
YYD1_k127_6789917_2 Cobalt transport protein K16785 - - 0.00000000000000000000000000000000000000000000000000000000000000001428 234.0
YYD1_k127_6789917_3 ECF-type riboflavin transporter, S component K16924 - - 0.0000000000000000000000000000001703 135.0
YYD1_k127_6799964_0 4Fe-4S ferredoxin iron-sulfur binding domain protein K11473 - - 0.0000000000000000000000000000000000000000000000000000000000000000003197 238.0
YYD1_k127_6799964_1 Glucose dehydrogenase C-terminus - - - 0.000000000000000000000000000000000000000006658 163.0
YYD1_k127_6817247_0 copper-translocating P-type ATPase K01533 - 3.6.3.4 3.454e-265 838.0
YYD1_k127_6817247_1 PFAM purine or other phosphorylase family 1 - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001029 358.0
YYD1_k127_6817425_0 Transposase IS116/IS110/IS902 family K07486 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000008152 265.0
YYD1_k127_6830065_0 Glycosyl hydrolases family 2 K01192 - 3.2.1.25 2.376e-211 669.0
YYD1_k127_6830065_1 Glycosyltransferase like family 2 - - - 0.00000000000000000000000000004849 121.0
YYD1_k127_6835905_0 Putative esterase K07214 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000373 342.0
YYD1_k127_6835905_1 maltose binding K15770,K15771 - - 0.00000000000009652 81.0
YYD1_k127_6881536_0 Major facilitator superfamily - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009924 337.0
YYD1_k127_6881536_1 Major Facilitator Superfamily - - - 0.0000006355 52.0
YYD1_k127_6885529_0 Histidine kinase - - - 0.000000000000000000000000000009913 122.0
YYD1_k127_6885529_1 Tellurite resistance protein TehB - - - 0.000000000000000000000871 102.0
YYD1_k127_6885529_2 Bacterial regulatory proteins, tetR family - - - 0.0000000000000000005479 93.0
YYD1_k127_6898777_0 -O-antigen - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000114 301.0
YYD1_k127_6898949_0 Binding-protein-dependent transport system inner membrane component K02034,K15582 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004725 358.0
YYD1_k127_6919562_0 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine K13038 - 4.1.1.36,6.3.2.5 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002235 479.0
YYD1_k127_6919562_1 DUF218 domain - - - 0.0000000000000000000000000000000000000000000000000000000000000003291 229.0
YYD1_k127_6919562_2 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K02484,K07642 - 2.7.13.3 0.0000000000000000000000000000000000000000000008902 169.0
YYD1_k127_6919562_3 Methylates the class 1 translation termination release factors RF1 PrfA and RF2 PrfB on the glutamine residue of the universally conserved GGQ motif K02493 GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0016740,GO:0016741,GO:0032259,GO:0044424,GO:0044444,GO:0044464 2.1.1.297 0.0000000000000000000000000000000000001991 145.0
YYD1_k127_741686_0 Endonuclease/Exonuclease/phosphatase family - - - 0.0000000000000000000000000000000000000005003 166.0
YYD1_k127_741686_2 - - - - 0.0005692 43.0
YYD1_k127_800432_0 COG2211 Na melibiose symporter and related K03292 - - 0.00000000000000000000000003211 112.0
YYD1_k127_800432_1 FAD dependent oxidoreductase K09516,K09835 - 1.3.99.23,5.2.1.13 0.000000000000000009614 96.0
YYD1_k127_804257_0 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01534 - 3.6.3.3,3.6.3.5 1.26e-201 652.0
YYD1_k127_804257_1 PFAM ADP-ribosylation Crystallin J1 - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001043 433.0
YYD1_k127_804257_2 Redoxin - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000001592 261.0
YYD1_k127_804257_3 Belongs to the UPF0312 family - - - 0.00000000000000000000000000000000000000000000000000000000000000000000009817 242.0
YYD1_k127_804257_4 DNA-binding transcription factor activity K15973 - - 0.00000000000000000000000000000000000000000000000007862 181.0
YYD1_k127_804257_5 PFAM Exonuclease, RNase T and DNA polymerase III K02342 - 2.7.7.7 0.000000000000000000000000000000000000000000000001456 181.0
YYD1_k127_804257_6 PFAM phospholipid glycerol acyltransferase K00655 - 2.3.1.51 0.000000000000000000000000000000000000001188 157.0
YYD1_k127_804257_7 Belongs to the peptidase S8 family - - - 0.0000000000000000000000000000000007151 136.0
YYD1_k127_804257_8 positive regulation of macromolecule biosynthetic process K03973 - - 0.0000000000001071 73.0
YYD1_k127_804257_9 Redoxin - - - 0.000000000009721 65.0
YYD1_k127_807106_0 Transposase (IS116 IS110 IS902 family) - - - 0.0000000000000000000000000000000000000000000000000000000000000000001788 241.0
YYD1_k127_826906_0 PFAM glycosyl transferase, family 51 - - - 9.334e-287 904.0
YYD1_k127_826906_1 Sodium hydrogen exchanger - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002328 418.0
YYD1_k127_826906_3 MaoC like domain - - - 0.0000000000000000000000000000000000000000000000000006868 188.0
YYD1_k127_829907_0 PFAM Pyridoxal-dependent decarboxylase - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001952 398.0
YYD1_k127_829907_1 membrane transporter protein K07090 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008404 325.0
YYD1_k127_829907_2 SMART AAA ATPase K03405 - 6.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000006453 293.0
YYD1_k127_829907_3 PFAM thioesterase superfamily protein - - - 0.000000000000000000000000000000000000000000000000944 179.0
YYD1_k127_832439_0 4fe-4S ferredoxin, iron-sulfur binding domain protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001605 372.0
YYD1_k127_832439_1 - - - - 0.0000000000000001586 91.0
YYD1_k127_838810_0 Polysaccharide biosynthesis protein - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000145 482.0
YYD1_k127_838810_1 Belongs to the N(4) N(6)-methyltransferase family - - - 0.00000000000000000000000000000000000000000000004668 178.0
YYD1_k127_838810_2 - - - - 0.000000000000000000000000000000000000000001555 167.0
YYD1_k127_845623_0 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH K00033 - 1.1.1.343,1.1.1.44 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008391 537.0
YYD1_k127_845623_1 AAA domain, putative AbiEii toxin, Type IV TA system - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006755 361.0
YYD1_k127_845623_3 Domain of unknown function (DUF4491) - - - 0.0000000000000000000000000000003241 125.0
YYD1_k127_853680_0 PFAM ABC transporter related K02028 - 3.6.3.21 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002452 387.0
YYD1_k127_853680_1 COGs COG0834 ABC-type amino acid transport signal transduction systems periplasmic component domain K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000002522 252.0
YYD1_k127_853680_2 Bacterial periplasmic substrate-binding proteins K02030 - - 0.000000000000000000000000000000000000000000000000000000000000000000000594 245.0
YYD1_k127_853680_3 Binding-protein-dependent transport system inner membrane component K02029 - - 0.0000000000000000000000000000000000000000107 161.0
YYD1_k127_853680_4 SCP-2 sterol transfer family - - - 0.000000000000000000000000000000001739 134.0
YYD1_k127_853680_5 pyridoxamine 5-phosphate K07005 - - 0.000000000000002268 81.0
YYD1_k127_858330_0 bacterial-type flagellum-dependent cell motility - - - 0.0000000000000000000006266 113.0
YYD1_k127_858330_1 Conserved repeat domain - - - 0.000004149 61.0
YYD1_k127_859978_0 Belongs to the peptidase S8 family K13276,K17734 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000002556 284.0
YYD1_k127_859978_1 Transglycosylase SLT domain - - - 0.000000000000000000000000000000000000000000000000000000000004584 214.0
YYD1_k127_859978_2 Serine aminopeptidase, S33 K03928 - 3.1.1.1 0.000000000000000000000000000000000000005951 156.0
YYD1_k127_859978_3 - - - - 0.0000000000000000000001896 98.0
YYD1_k127_859978_4 Glycosyl transferases group 1 - - - 0.00000000000000001839 83.0
YYD1_k127_859978_5 Domain of unknown function (DUF4332) - - - 0.000000000001079 75.0
YYD1_k127_894077_0 Histidine kinase-like ATPases K01768,K02488,K17763 GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0042802,GO:0044424,GO:0044464 2.7.7.65,4.6.1.1 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001356 531.0
YYD1_k127_894077_1 PhoQ Sensor - - - 0.000000000000000000000000000000000002472 145.0
YYD1_k127_894077_2 Pyridine nucleotide-disulphide oxidoreductase K00384 - 1.8.1.9 0.000003056 49.0
YYD1_k127_896712_0 DegT/DnrJ/EryC1/StrS aminotransferase family - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000004396 258.0
YYD1_k127_896712_1 Beta-lactamase - - - 0.0000000000000000000004084 101.0
YYD1_k127_912057_0 helix_turn_helix, Lux Regulon K03556 - - 0.000000000000000000000000000000000000000000000000000253 202.0
YYD1_k127_917676_0 Hsp70 protein K04046 - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000003488 284.0
YYD1_k127_917676_1 Carboxypeptidase regulatory-like domain - - - 0.000000000000000009972 85.0
YYD1_k127_917676_2 B3 4 domain protein - - - 0.0000001111 59.0
YYD1_k127_917676_3 A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner K02469 GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006265,GO:0006725,GO:0006807,GO:0006996,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017076,GO:0017111,GO:0030312,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034335,GO:0034641,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0046872,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363 5.99.1.3 0.0000001998 63.0
YYD1_k127_92802_0 - - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000326 297.0
YYD1_k127_92802_1 Response regulator receiver - - - 0.000000000000000000000000000000000000000000000000000000003168 206.0
YYD1_k127_92802_2 Multicopper oxidase K22348 - 1.16.3.3 0.00000000000000000000000000000000000000000000000000006209 207.0
YYD1_k127_92802_3 transcription factor binding K07315,K17763 - 3.1.3.3 0.000000000000000000000000000000000000000000000001872 196.0
YYD1_k127_92802_4 histidine kinase dimerisation and phosphoacceptor region - - - 0.0000000000000000000000000000000000000003294 170.0
YYD1_k127_92802_5 amine dehydrogenase activity K13730 - - 0.000000000000000000000000000000000007625 139.0
YYD1_k127_92802_6 amine dehydrogenase activity K13730 - - 0.000000000002232 69.0
YYD1_k127_952967_0 PFAM Alpha amylase, catalytic domain K01176 - 3.2.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002746 545.0
YYD1_k127_952967_1 Alpha-amylase domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006384 542.0
YYD1_k127_952967_2 Alpha-amylase domain K01208 - 3.2.1.133,3.2.1.135,3.2.1.54 0.0000000000000000000000000000000000000000000001514 174.0
YYD1_k127_952967_3 Toxic component of a toxin-antitoxin (TA) module K07171 - - 0.00000000000000000000000000000000000000006421 154.0
YYD1_k127_952967_4 Putative esterase K07214 - - 0.000000000000000000000001594 108.0
YYD1_k127_958166_0 TIGRFAM DNA polymerase III, alpha subunit K02337 - 2.7.7.7 0.0 1568.0
YYD1_k127_958166_1 Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) K01875 - 6.1.1.11 1.533e-204 645.0
YYD1_k127_958166_2 Protein kinase domain K12132 - 2.7.11.1 0.0000000000000000000000000000000000000000000000000000000002691 227.0
YYD1_k127_958166_3 Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate K03801 - 2.3.1.181 0.000000000000000000000000000000000000000000000000003616 190.0
YYD1_k127_958166_4 Protein of unknown function (DUF456) K09793 - - 0.000000000000000000000000000000000000000000002455 169.0
YYD1_k127_958166_5 TIGRFAM HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 - - 0.0000000000000000000000000000000000000000002464 165.0
YYD1_k127_958166_6 oxidoreductase activity, acting on CH-OH group of donors - - - 0.000000000000000000000000000000000000000005609 159.0
YYD1_k127_958166_7 Sulfatase-modifying factor enzyme 1 - - - 0.000000000000000000000000000000000003078 158.0
YYD1_k127_958166_8 PIN domain - - - 0.000000000000000000000002156 107.0
YYD1_k127_958166_9 Antitoxin component of a toxin-antitoxin (TA) module - - - 0.00009894 49.0
YYD1_k127_958617_0 transporter of a GTP-driven Fe(2 ) uptake system K04759 - - 9.508e-217 692.0
YYD1_k127_958617_1 DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity K02343 - 2.7.7.7 0.000000000000000000000000000000000000000000000000000000000000000000000002491 246.0
YYD1_k127_958617_2 PFAM formylmethanofuran dehydrogenase, subunit E region K11261 - 1.2.7.12 0.00000000000000000000000000000000000000000000000000000000000000000000001113 252.0
YYD1_k127_958617_3 Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis K00560 - 2.1.1.45 0.000000000000000000000000000000000000000000000000000000000003629 212.0
YYD1_k127_958617_4 Streptomycin adenylyltransferase K05593 - - 0.0000000000000000000000000000000000000000000000000000007495 203.0
YYD1_k127_958617_5 Iron dependent repressor, metal binding and dimerisation domain K03709 - - 0.00000000000000000000000000006824 126.0
YYD1_k127_958617_7 FeoA K04758 - - 0.0000007653 56.0
YYD1_k127_95907_0 transposase activity - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001741 456.0
YYD1_k127_971129_0 PFAM Bile acid sodium symporter K03325 - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002975 555.0
YYD1_k127_971129_1 Alpha/beta hydrolase of unknown function (DUF1100) K06889 - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002689 401.0
YYD1_k127_971129_2 protein possibly involved in aromatic compounds catabolism - - - 0.000000000000000000000000000000000000003168 154.0
YYD1_k127_971129_3 Conserved Protein - - - 0.00000000000000000009273 92.0
YYD1_k127_971129_4 Low molecular weight phosphotyrosine protein phosphatase K03741 - 1.20.4.1 0.00000000000000000009335 91.0
YYD1_k127_984097_0 PFAM glycoside hydrolase family 65 central catalytic - - - 4.02e-224 707.0
YYD1_k127_984097_1 glycoside hydrolase family 2 sugar binding - - - 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001 509.0
YYD1_k127_984097_2 - - - - 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000001973 302.0
YYD1_k127_984097_3 Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine - - - 0.00000000000000000000000000000000000000000000000000000000000000000000000000000000003047 304.0
YYD1_k127_984097_4 COG NOG04001 non supervised orthologous group K15923 - 3.2.1.51 0.00005906 52.0
YYD1_k127_984097_5 Protein of unknown function, DUF624 - - - 0.0002198 51.0
YYD1_k127_988645_0 PFAM Transposase, IS4-like - - - 0.0000000000000000000001447 112.0
YYD1_k127_992872_0 Glycosyl hydrolase family 3 C-terminal domain K05349 - 3.2.1.21 0.000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005055 526.0
YYD1_k127_992872_1 Pyridoxamine 5'-phosphate oxidase K01768 - 4.6.1.1 0.000000000000000000000000000000000000000000000000000000000000000000000000000000003113 280.0
YYD1_k127_992872_2 PFAM 4Fe-4S ferredoxin iron-sulfur binding domain protein K04069 - 1.97.1.4 0.00000000000000000000000000000000000000004475 154.0